AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0771430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0771430 MtrunA17_Chr5g0425261 61.929 394 118 10 1 379 1 377 4.11e-152 434
Msa0771430 MtrunA17_Chr5g0424801 61.168 394 121 10 1 379 1 377 5.41e-150 428
Msa0771430 MtrunA17_Chr5g0424931 55.721 402 120 12 1 361 8 392 2.63e-132 389
Msa0771430 MtrunA17_Chr5g0424741 52.745 419 140 9 1 365 1 415 6.39e-132 388
Msa0771430 MtrunA17_Chr1g0178011 56.499 377 128 10 4 361 3 362 8.69e-128 375
Msa0771430 MtrunA17_Chr5g0417281 51.282 351 143 11 3 338 1 338 1.58e-102 312
Msa0771430 MtrunA17_Chr5g0436761 48.588 354 150 11 4 338 3 343 5.36e-100 304
Msa0771430 MtrunA17_Chr2g0277461 47.000 400 177 14 1 374 1 391 7.56e-98 298
Msa0771430 MtrunA17_Chr2g0289221 52.923 325 123 13 4 312 11 321 1.15e-96 292
Msa0771430 MtrunA17_Chr5g0417211 50.617 324 133 11 4 312 3 314 1.04e-89 276
Msa0771430 MtrunA17_Chr2g0277531 47.500 320 139 13 7 312 14 318 2.25e-80 249
Msa0771430 MtrunA17_Chr3g0115271 40.731 383 168 10 3 333 6 381 9.03e-74 240
Msa0771430 MtrunA17_Chr1g0181211 36.516 419 189 13 8 364 22 425 1.90e-69 231
Msa0771430 MtrunA17_Chr5g0425661 55.288 208 81 7 13 214 37 238 7.30e-67 211
Msa0771430 MtrunA17_Chr1g0199681 37.722 395 161 14 8 337 89 463 3.31e-66 222
Msa0771430 MtrunA17_Chr4g0028971 38.083 386 169 12 13 337 12 388 1.54e-65 220
Msa0771430 MtrunA17_Chr2g0326761 37.467 379 173 13 13 336 11 380 6.37e-65 219
Msa0771430 MtrunA17_Chr7g0264171 34.264 394 190 10 8 338 26 413 9.67e-64 214
Msa0771430 MtrunA17_Chr7g0264161 36.570 309 168 10 23 312 2 301 1.30e-53 179
Msa0771430 MtrunA17_Chr2g0282961 30.184 381 225 10 3 352 44 414 3.10e-48 172
Msa0771430 MtrunA17_Chr4g0009751 33.791 364 207 12 13 355 19 369 2.82e-47 170
Msa0771430 MtrunA17_Chr2g0276781 33.903 351 200 11 13 340 23 364 1.90e-46 168
Msa0771430 MtrunA17_Chr4g0046371 30.914 372 213 12 13 355 38 394 7.40e-44 161
Msa0771430 MtrunA17_Chr2g0285461 31.933 357 211 11 1 332 8 357 1.48e-43 161
Msa0771430 MtrunA17_Chr8g0385791 32.659 346 204 11 13 337 59 396 4.08e-43 160
Msa0771430 MtrunA17_Chr4g0070181 31.339 351 202 11 8 332 18 355 1.44e-42 159
Msa0771430 MtrunA17_Chr8g0376771 29.805 359 215 9 1 332 8 356 4.82e-42 157
Msa0771430 MtrunA17_Chr2g0326281 29.056 413 227 14 13 376 56 451 8.31e-42 156
Msa0771430 MtrunA17_Chr7g0239061 30.939 362 223 11 13 356 14 366 1.79e-41 154
Msa0771430 MtrunA17_Chr1g0156321 30.925 346 213 10 8 333 38 377 2.64e-41 155
Msa0771430 MtrunA17_Chr2g0301251 29.915 351 207 11 8 332 18 355 5.47e-41 154
Msa0771430 MtrunA17_Chr3g0109391 29.201 363 196 10 8 332 21 360 1.37e-39 150
Msa0771430 MtrunA17_Chr4g0029671 30.400 375 217 10 13 355 54 416 1.38e-39 149
Msa0771430 MtrunA17_Chr5g0433301 28.933 356 210 10 6 332 17 358 1.07e-38 147
Msa0771430 MtrunA17_Chr8g0346711 31.856 361 216 12 13 355 29 377 3.04e-38 145
Msa0771430 MtrunA17_Chr8g0389081 29.944 354 201 10 10 332 29 366 1.91e-37 144
Msa0771430 MtrunA17_Chr5g0424791 51.333 150 56 5 65 209 14 151 9.42e-37 130
Msa0771430 MtrunA17_Chr5g0425651 54.955 111 40 1 235 335 1 111 1.20e-31 116
Msa0771430 MtrunA17_Chr5g0419861 46.465 99 49 4 66 161 26 123 6.26e-16 73.9
Msa0771430 MtrunA17_Chr8g0356211 23.661 224 152 6 123 332 2 220 1.00e-14 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0771430 AT1G77850.1 39.175 388 153 12 8 334 14 379 2.69e-76 247
Msa0771430 AT1G77850.2 39.175 388 153 12 8 334 14 379 2.81e-76 247
Msa0771430 AT4G30080.1 39.950 398 154 15 13 344 19 397 1.21e-70 234
Msa0771430 AT2G28350.2 37.280 397 172 15 6 337 3 387 8.91e-64 215
Msa0771430 AT2G28350.1 37.280 397 172 15 6 337 3 387 9.29e-64 216
Msa0771430 AT1G34390.1 34.561 353 189 12 13 340 27 362 2.87e-51 181
Msa0771430 AT2G33860.1 31.746 378 220 11 13 365 54 418 1.06e-48 174
Msa0771430 AT4G23980.2 33.333 336 203 9 13 332 12 342 2.76e-48 173
Msa0771430 AT2G46530.1 33.333 348 186 12 13 332 21 350 3.11e-48 172
Msa0771430 AT4G23980.1 33.333 336 203 9 13 332 12 342 3.33e-48 173
Msa0771430 AT2G46530.3 33.333 348 186 12 13 332 42 371 3.83e-48 172
Msa0771430 AT1G34310.1 35.072 345 186 12 10 332 24 352 4.03e-48 172
Msa0771430 AT1G35520.1 34.503 342 186 12 13 332 27 352 2.38e-46 167
Msa0771430 AT1G35240.1 33.616 354 195 13 13 342 27 364 8.72e-45 163
Msa0771430 AT3G61830.1 32.448 339 201 11 13 332 25 354 3.23e-44 161
Msa0771430 AT5G62000.4 32.174 345 207 10 13 337 61 398 4.83e-44 163
Msa0771430 AT5G62000.2 32.174 345 207 10 13 337 61 398 5.05e-44 163
Msa0771430 AT5G62000.5 32.174 345 207 10 13 337 61 398 5.05e-44 163
Msa0771430 AT5G62000.3 32.174 345 207 10 13 337 61 398 5.05e-44 163
Msa0771430 AT5G62000.1 32.174 345 207 10 13 337 61 398 5.05e-44 163
Msa0771430 AT1G35540.1 32.749 342 192 11 13 332 27 352 1.56e-43 159
Msa0771430 AT1G59750.2 32.153 339 204 10 13 332 22 353 2.67e-43 160
Msa0771430 AT1G59750.1 32.153 339 204 10 13 332 22 353 2.71e-43 160
Msa0771430 AT1G59750.3 32.153 339 204 10 13 332 22 353 2.71e-43 160
Msa0771430 AT1G59750.4 32.153 339 204 10 13 332 22 353 2.84e-43 159
Msa0771430 AT1G34410.1 33.333 342 190 12 13 332 27 352 5.98e-43 158
Msa0771430 AT5G37020.2 29.213 356 205 11 8 332 17 356 6.59e-42 156
Msa0771430 AT5G37020.1 29.213 356 205 11 8 332 17 356 9.97e-42 156
Msa0771430 AT1G30330.1 31.742 356 207 12 5 332 10 357 1.56e-41 156
Msa0771430 AT1G30330.3 31.609 348 207 11 8 332 20 359 2.95e-41 155
Msa0771430 AT1G30330.2 31.609 348 207 11 8 332 20 359 2.95e-41 155
Msa0771430 AT5G20730.2 31.143 350 204 11 8 332 19 356 7.67e-41 154
Msa0771430 AT1G19220.1 29.310 348 209 10 10 332 20 355 8.85e-40 151
Msa0771430 AT5G20730.3 31.161 353 201 13 8 332 19 357 1.03e-39 150
Msa0771430 AT5G20730.1 31.161 353 201 13 8 332 19 357 1.04e-39 150
Msa0771430 AT5G60450.2 29.474 380 215 14 10 355 38 398 4.94e-39 148
Msa0771430 AT5G60450.1 29.474 380 215 14 10 355 62 422 5.95e-39 148
Msa0771430 AT1G19850.1 30.925 346 212 11 9 333 50 389 1.49e-38 147
Msa0771430 AT1G19850.2 30.925 346 212 11 9 333 39 378 1.82e-38 147
Msa0771430 AT1G34170.1 30.028 353 216 12 13 346 25 365 5.13e-36 137
Msa0771430 AT3G61830.2 32.281 285 169 9 64 332 27 303 1.57e-34 134
Msa0771430 AT2G46530.2 34.800 250 132 8 100 332 28 263 1.15e-33 131
Msa0771430 AT2G33860.2 31.461 267 158 8 117 365 2 261 3.22e-32 126
Msa0771430 AT1G34170.2 28.448 348 202 11 13 346 25 339 1.58e-31 125
Msa0771430 AT1G34170.3 28.448 348 202 11 13 346 25 339 3.13e-31 124
Msa0771430 AT1G43950.1 36.150 213 106 8 13 212 27 222 1.74e-29 114
Msa0771430 AT5G37020.3 28.309 272 160 9 85 332 1 261 2.22e-26 111
Msa0771430 ATMG00940.1 41.111 90 43 1 201 290 44 123 5.43e-12 63.9

Find 111 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCATTGGATTGTTAAAATT+TGG 0.112967 5_2:+43888520 None:intergenic
ATGAAGATTGTTTGGAATTC+TGG 0.127863 5_2:-43888133 Msa0771430:CDS
CTTCTTCGAATTCCCCTAAT+TGG 0.184271 5_2:-43888045 Msa0771430:CDS
GTTAACCGAGTCGGCGGTTT+TGG 0.206731 5_2:-43888260 Msa0771430:CDS
GCATGTTCCAAGTGACCTTT+TGG 0.275383 5_2:+43888838 None:intergenic
AGGAGGGTGAAGAGGGAGGC+TGG 0.281049 5_2:-43888294 Msa0771430:CDS
GTGAAGAGGGAGGCTGGAAG+AGG 0.299344 5_2:-43888288 Msa0771430:CDS
CCTGAAGAATGTTCCAATTA+GGG 0.299732 5_2:+43888032 None:intergenic
CCACAGGAGGAGCTGGTTCT+TGG 0.300062 5_2:+43888650 None:intergenic
ACCTGAAGAATGTTCCAATT+AGG 0.304192 5_2:+43888031 None:intergenic
GCGTTGTCGAAGGCAAAATT+TGG 0.307258 5_2:-43888921 Msa0771430:CDS
TGCCAAGGATTGACTAGGTT+TGG 0.313165 5_2:+43887370 None:intergenic
TGTATTATCCAAGTCATAAT+TGG 0.331214 5_2:-43888195 Msa0771430:CDS
CCCTAATTGGAACATTCTTC+AGG 0.342494 5_2:-43888032 Msa0771430:intron
TTTGGATTCTGCGGGATATT+AGG 0.363066 5_2:+43887388 None:intergenic
CAAATTCTACATTCAATTGC+AGG 0.366385 5_2:-43887247 Msa0771430:CDS
TGGAATCTTGACGCCGGGGC+CGG 0.386761 5_2:+43888888 None:intergenic
ATGACGCTATGAAGATTGTT+TGG 0.387773 5_2:-43888141 Msa0771430:CDS
GTAGAGAAACGGTGTCTATC+AGG 0.389463 5_2:+43888427 None:intergenic
CCGATGTTCAAGGCCAAGTC+TGG 0.398680 5_2:-43888477 Msa0771430:CDS
TGAAGAGGGAGGCTGGAAGA+GGG 0.400454 5_2:-43888287 Msa0771430:CDS
TAAACGACTGAGTTCAGCTT+TGG 0.405710 5_2:+43888868 None:intergenic
TGAAGATTGTTTGGAATTCT+GGG 0.411575 5_2:-43888132 Msa0771430:CDS
AATTGAATGTAGAATTTGTT+GGG 0.424854 5_2:+43887252 None:intergenic
TAACAATCCAATGCCGTCTC+AGG 0.429929 5_2:-43888512 Msa0771430:CDS
GGTGAGATTGACAGTGGAGG+AGG 0.429947 5_2:+43887312 None:intergenic
CGCTGAGATGATGCAGAGAT+AGG 0.432301 5_2:+43888759 None:intergenic
AGCTTTGGAATCTTGACGCC+GGG 0.433725 5_2:+43888883 None:intergenic
TACCGGAGTGAGGATGAGTT+TGG 0.435570 5_2:+43888696 None:intergenic
AAGGAGACTGTCTGAGGTAG+TGG 0.438861 5_2:+43888805 None:intergenic
CCAAGGTTTGGCTACGCGTC+AGG 0.440106 5_2:+43887208 None:intergenic
CACCCTCCTTCTTTATGTGC+CGG 0.454754 5_2:+43888308 None:intergenic
CGTTTCTCTACTGGCTGGAC+TGG 0.455390 5_2:-43888415 Msa0771430:CDS
CATAAAGAAGGAGGGTGAAG+AGG 0.457435 5_2:-43888302 Msa0771430:CDS
GATAGACACCGTTTCTCTAC+TGG 0.461405 5_2:-43888424 Msa0771430:CDS
CAATTGAATGTAGAATTTGT+TGG 0.464823 5_2:+43887251 None:intergenic
TTATCATAGGTTAACTGGGA+TGG 0.471984 5_2:-43887412 Msa0771430:intron
GAGGAGCTGGTTCTTGGACT+TGG 0.482484 5_2:+43888656 None:intergenic
ACACCACCGTCAATTGTTAC+CGG 0.486756 5_2:+43888679 None:intergenic
CCTTCGACAACGCGTGGCTG+AGG 0.488355 5_2:+43888931 None:intergenic
TTTGAAGAATGATCAGTCCC+TGG 0.489333 5_2:-43888092 Msa0771430:CDS
CAATTAGGGGAATTCGAAGA+AGG 0.495700 5_2:+43888046 None:intergenic
AGAATGAAGATCATGAAGAA+AGG 0.497234 5_2:+43888786 None:intergenic
CTCACTCCGGTAACAATTGA+CGG 0.499475 5_2:-43888685 Msa0771430:CDS
CCATCTTCGTCGGGAACCAC+AGG 0.500195 5_2:+43888634 None:intergenic
ATCCAAACCTAGTCAATCCT+TGG 0.508187 5_2:-43887372 Msa0771430:CDS
CACATTGGAGATTGTTCCCA+GGG 0.513167 5_2:+43888075 None:intergenic
CAACCTGCCAAGGATTGACT+AGG 0.513736 5_2:+43887365 None:intergenic
TCGACAACGCGTGGCTGAGG+CGG 0.515631 5_2:+43888934 None:intergenic
AAAAGCTCCTGAGACGGCAT+TGG 0.515807 5_2:+43888505 None:intergenic
AAAATTTGGCAGACATGCGC+CGG 0.516610 5_2:-43888907 Msa0771430:CDS
GAGGAGGAAGTCGAAGGTGC+AGG 0.519616 5_2:+43887328 None:intergenic
AAGATTGTTTCCATCTTCGT+CGG 0.521879 5_2:+43888624 None:intergenic
TATAGTTGAACCTCCAGACT+TGG 0.526294 5_2:+43888464 None:intergenic
TCGGGAACCACAGGAGGAGC+TGG 0.527028 5_2:+43888643 None:intergenic
ATAAAGAAGGAGGGTGAAGA+GGG 0.528210 5_2:-43888301 Msa0771430:CDS
AGTCGAAGGTGCAGGTATGT+TGG 0.528919 5_2:+43887336 None:intergenic
TGGCTGAGGCGGCAGAGACA+TGG 0.530662 5_2:+43888945 None:intergenic
CCTCAGCCACGCGTTGTCGA+AGG 0.531551 5_2:-43888931 Msa0771430:CDS
TGACTAGGTTTGGATTCTGC+GGG 0.534959 5_2:+43887380 None:intergenic
GATGAACTCTCAGCAAGTCT+AGG 0.537540 5_2:+43887277 None:intergenic
AGATTGTTTCCATCTTCGTC+GGG 0.537991 5_2:+43888625 None:intergenic
AGCTTCCAAAACCGCCGACT+CGG 0.538802 5_2:+43888255 None:intergenic
CCTGTGGTTCCCGACGAAGA+TGG 0.542076 5_2:-43888634 Msa0771430:CDS
AAACCTAGTCAATCCTTGGC+AGG 0.546100 5_2:-43887368 Msa0771430:CDS
CCAGACTTGGCCTTGAACAT+CGG 0.546481 5_2:+43888477 None:intergenic
AGGAGACTGTCTGAGGTAGT+GGG 0.547225 5_2:+43888806 None:intergenic
TTGAAGAATGATCAGTCCCT+GGG 0.547852 5_2:-43888091 Msa0771430:CDS
TTTGGAAGCTGCGGAATTGG+CGG 0.551783 5_2:-43888242 Msa0771430:CDS
ACACATTGGAGATTGTTCCC+AGG 0.561486 5_2:+43888074 None:intergenic
CATGAAAACAATGGAATCGT+CGG 0.561963 5_2:+43888366 None:intergenic
CTCAGCGGTTGATCTTCTTG+CGG 0.563754 5_2:-43888743 Msa0771430:CDS
TTGGAAACTTCAACCTGCCA+AGG 0.564377 5_2:+43887355 None:intergenic
CAGTCCAGCCAGTAGAGAAA+CGG 0.568162 5_2:+43888416 None:intergenic
GACACCGTTTCTCTACTGGC+TGG 0.569539 5_2:-43888420 Msa0771430:CDS
CAGCTTTGGAATCTTGACGC+CGG 0.579151 5_2:+43888882 None:intergenic
TTGACTAGGTTTGGATTCTG+CGG 0.579536 5_2:+43887379 None:intergenic
CGCCAAACTCATCCTCACTC+CGG 0.579944 5_2:-43888698 Msa0771430:CDS
AATACGCCGGCACATAAAGA+AGG 0.582192 5_2:-43888314 Msa0771430:CDS
GAGTTTGGCGAAAACTTCAT+CGG 0.584189 5_2:+43888711 None:intergenic
AAATCAGACCAATTATGACT+TGG 0.584394 5_2:+43888187 None:intergenic
TCTGCGGGAGAGTTATCTGT+TGG 0.584504 5_2:-43888337 Msa0771430:CDS
AAATTCTACATTCAATTGCA+GGG 0.586656 5_2:-43887246 Msa0771430:CDS
CATTCAATTGCAGGGTCGAG+TGG 0.586792 5_2:-43887238 Msa0771430:CDS
ACTGTCTGAGGTAGTGGGGA+AGG 0.593489 5_2:+43888811 None:intergenic
CGAAGAAGGATTAGACACAT+TGG 0.604406 5_2:+43888060 None:intergenic
CTGAAGAATGTTCCAATTAG+GGG 0.615518 5_2:+43888033 None:intergenic
CGTCAATTGTTACCGGAGTG+AGG 0.618461 5_2:+43888686 None:intergenic
GCGAAAACTTCATCGGTGTG+AGG 0.620277 5_2:+43888718 None:intergenic
ACGCCGGCACATAAAGAAGG+AGG 0.622809 5_2:-43888311 Msa0771430:CDS
GAGGGAGAAGTTAACCGAGT+CGG 0.627289 5_2:-43888269 Msa0771430:CDS
ATTGAATGTAGAATTTGTTG+GGG 0.627689 5_2:+43887253 None:intergenic
CCAAGAACCAGCTCCTCCTG+TGG 0.630584 5_2:-43888650 Msa0771430:CDS
AAGAAGGAGGGTGAAGAGGG+AGG 0.636512 5_2:-43888298 Msa0771430:CDS
ATGTTCAAGGCCAAGTCTGG+AGG 0.637068 5_2:-43888474 Msa0771430:CDS
CGCCGGCACATAAAGAAGGA+GGG 0.641777 5_2:-43888310 Msa0771430:CDS
GGAGAAGTTAACCGAGTCGG+CGG 0.643380 5_2:-43888266 Msa0771430:CDS
TGAGGTGAGATTGACAGTGG+AGG 0.644690 5_2:+43887309 None:intergenic
TCTTCGTCGGGAACCACAGG+AGG 0.646761 5_2:+43888637 None:intergenic
TCTATCAGGATTCTTGCGAA+AGG 0.647881 5_2:+43888441 None:intergenic
GGAGACTGTCTGAGGTAGTG+GGG 0.652562 5_2:+43888807 None:intergenic
TTGAATGTAGAATTTGTTGG+GGG 0.657320 5_2:+43887254 None:intergenic
AGTTATCTGTTGGAATACGC+CGG 0.657595 5_2:-43888327 Msa0771430:CDS
TGAAGAAAGGAGACTGTCTG+AGG 0.660800 5_2:+43888799 None:intergenic
CTATCTCTGCATCATCTCAG+CGG 0.677491 5_2:-43888758 Msa0771430:CDS
TGTTGAGGTGAGATTGACAG+TGG 0.681746 5_2:+43887306 None:intergenic
GCTTTGGAATCTTGACGCCG+GGG 0.693460 5_2:+43888884 None:intergenic
TGAATGTAGAATTTGTTGGG+GGG 0.703111 5_2:+43887255 None:intergenic
ACAGTGGAGGAGGAAGTCGA+AGG 0.704506 5_2:+43887322 None:intergenic
TTGTGTAAGAGTCTTGACGT+AGG 0.718748 5_2:+43888597 None:intergenic
ACTCCGGTAACAATTGACGG+TGG 0.780092 5_2:-43888682 Msa0771430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAATCTAATTATGTATT+TGG + chr5_2:43888185-43888204 None:intergenic 10.0%
!! TATGATAAAAAGATAAAAAA+TGG + chr5_2:43888738-43888757 None:intergenic 10.0%
!!! ATTTTTTATCTTTTTATCAT+AGG - chr5_2:43888737-43888756 Msa0771430:CDS 10.0%
!! AAATAATCTAATTATGTATT+TGG + chr5_2:43888185-43888204 None:intergenic 10.0%
!! TATGATAAAAAGATAAAAAA+TGG + chr5_2:43888738-43888757 None:intergenic 10.0%
!!! ATTTTTTATCTTTTTATCAT+AGG - chr5_2:43888737-43888756 Msa0771430:CDS 10.0%
!! TTACAAAATATAATTGCAAT+TGG + chr5_2:43888336-43888355 None:intergenic 15.0%
!! TTACAAAATATAATTGCAAT+TGG + chr5_2:43888336-43888355 None:intergenic 15.0%
!! TGTATATCTTTGTTCTTTAT+AGG - chr5_2:43888303-43888322 Msa0771430:CDS 20.0%
!! CTATACATAACAGAAAATTA+TGG + chr5_2:43888359-43888378 None:intergenic 20.0%
!! TTTCTTCGTTTAATGTTATT+CGG + chr5_2:43888441-43888460 None:intergenic 20.0%
!! AATAACATTAAACGAAGAAA+TGG - chr5_2:43888441-43888460 Msa0771430:CDS 20.0%
!!! AATTGAATGTAGAATTTGTT+GGG + chr5_2:43888913-43888932 None:intergenic 20.0%
!! TGTATATCTTTGTTCTTTAT+AGG - chr5_2:43888303-43888322 Msa0771430:CDS 20.0%
!! CTATACATAACAGAAAATTA+TGG + chr5_2:43888359-43888378 None:intergenic 20.0%
!! TTTCTTCGTTTAATGTTATT+CGG + chr5_2:43888441-43888460 None:intergenic 20.0%
!! AATAACATTAAACGAAGAAA+TGG - chr5_2:43888441-43888460 Msa0771430:CDS 20.0%
!!! AATTGAATGTAGAATTTGTT+GGG + chr5_2:43888913-43888932 None:intergenic 20.0%
!! AGAGTTTTTCATGAAAACAA+TGG + chr5_2:43887808-43887827 None:intergenic 25.0%
! TGTATTATCCAAGTCATAAT+TGG - chr5_2:43887967-43887986 Msa0771430:intron 25.0%
! CTGAAACTATAATTAGATCA+TGG - chr5_2:43888257-43888276 Msa0771430:CDS 25.0%
! AAATAAAGATCCTACTTAGA+AGG + chr5_2:43888630-43888649 None:intergenic 25.0%
!! TCTTTTTATCATAGGTTAAC+TGG - chr5_2:43888745-43888764 Msa0771430:CDS 25.0%
!! CTTTTTATCATAGGTTAACT+GGG - chr5_2:43888746-43888765 Msa0771430:CDS 25.0%
!!! ATTGAATGTAGAATTTGTTG+GGG + chr5_2:43888912-43888931 None:intergenic 25.0%
! CAATTGAATGTAGAATTTGT+TGG + chr5_2:43888914-43888933 None:intergenic 25.0%
! AAATTCTACATTCAATTGCA+GGG - chr5_2:43888916-43888935 Msa0771430:CDS 25.0%
!! AGAGTTTTTCATGAAAACAA+TGG + chr5_2:43887808-43887827 None:intergenic 25.0%
! TGTATTATCCAAGTCATAAT+TGG - chr5_2:43887967-43887986 Msa0771430:intron 25.0%
! CTGAAACTATAATTAGATCA+TGG - chr5_2:43888257-43888276 Msa0771430:CDS 25.0%
! AAATAAAGATCCTACTTAGA+AGG + chr5_2:43888630-43888649 None:intergenic 25.0%
!! TCTTTTTATCATAGGTTAAC+TGG - chr5_2:43888745-43888764 Msa0771430:CDS 25.0%
!! CTTTTTATCATAGGTTAACT+GGG - chr5_2:43888746-43888765 Msa0771430:CDS 25.0%
!!! ATTGAATGTAGAATTTGTTG+GGG + chr5_2:43888912-43888931 None:intergenic 25.0%
! CAATTGAATGTAGAATTTGT+TGG + chr5_2:43888914-43888933 None:intergenic 25.0%
! AAATTCTACATTCAATTGCA+GGG - chr5_2:43888916-43888935 Msa0771430:CDS 25.0%
! GTCGTTTACTATTTTCCAAA+AGG - chr5_2:43887309-43887328 Msa0771430:CDS 30.0%
AGAATGAAGATCATGAAGAA+AGG + chr5_2:43887379-43887398 None:intergenic 30.0%
! GGCATTGGATTGTTAAAATT+TGG + chr5_2:43887645-43887664 None:intergenic 30.0%
! TGTTTTCATGAAAAACTCTG+CGG - chr5_2:43887809-43887828 Msa0771430:intron 30.0%
AAATCAGACCAATTATGACT+TGG + chr5_2:43887978-43887997 None:intergenic 30.0%
!! TCATAATTGGTCTGATTTTG+TGG - chr5_2:43887980-43887999 Msa0771430:intron 30.0%
! ATGAAGATTGTTTGGAATTC+TGG - chr5_2:43888029-43888048 Msa0771430:intron 30.0%
! TGAAGATTGTTTGGAATTCT+GGG - chr5_2:43888030-43888049 Msa0771430:intron 30.0%
TATGTAATTGCAAAACCACT+CGG + chr5_2:43888388-43888407 None:intergenic 30.0%
ACGTATTGTAGTCATAGATA+AGG - chr5_2:43888497-43888516 Msa0771430:CDS 30.0%
CGTATTGTAGTCATAGATAA+GGG - chr5_2:43888498-43888517 Msa0771430:CDS 30.0%
GTATTGTAGTCATAGATAAG+GGG - chr5_2:43888499-43888518 Msa0771430:CDS 30.0%
ATTAAGTTCGAGACTTAATG+TGG + chr5_2:43888588-43888607 None:intergenic 30.0%
AGTTTAAGAACCTTCTAAGT+AGG - chr5_2:43888617-43888636 Msa0771430:CDS 30.0%
!! TTGAATGTAGAATTTGTTGG+GGG + chr5_2:43888911-43888930 None:intergenic 30.0%
CAAATTCTACATTCAATTGC+AGG - chr5_2:43888915-43888934 Msa0771430:CDS 30.0%
! GTCGTTTACTATTTTCCAAA+AGG - chr5_2:43887309-43887328 Msa0771430:CDS 30.0%
AGAATGAAGATCATGAAGAA+AGG + chr5_2:43887379-43887398 None:intergenic 30.0%
! GGCATTGGATTGTTAAAATT+TGG + chr5_2:43887645-43887664 None:intergenic 30.0%
! TGTTTTCATGAAAAACTCTG+CGG - chr5_2:43887809-43887828 Msa0771430:intron 30.0%
AAATCAGACCAATTATGACT+TGG + chr5_2:43887978-43887997 None:intergenic 30.0%
!! TCATAATTGGTCTGATTTTG+TGG - chr5_2:43887980-43887999 Msa0771430:intron 30.0%
! ATGAAGATTGTTTGGAATTC+TGG - chr5_2:43888029-43888048 Msa0771430:intron 30.0%
! TGAAGATTGTTTGGAATTCT+GGG - chr5_2:43888030-43888049 Msa0771430:intron 30.0%
TATGTAATTGCAAAACCACT+CGG + chr5_2:43888388-43888407 None:intergenic 30.0%
ACGTATTGTAGTCATAGATA+AGG - chr5_2:43888497-43888516 Msa0771430:CDS 30.0%
CGTATTGTAGTCATAGATAA+GGG - chr5_2:43888498-43888517 Msa0771430:CDS 30.0%
GTATTGTAGTCATAGATAAG+GGG - chr5_2:43888499-43888518 Msa0771430:CDS 30.0%
ATTAAGTTCGAGACTTAATG+TGG + chr5_2:43888588-43888607 None:intergenic 30.0%
AGTTTAAGAACCTTCTAAGT+AGG - chr5_2:43888617-43888636 Msa0771430:CDS 30.0%
!! TTGAATGTAGAATTTGTTGG+GGG + chr5_2:43888911-43888930 None:intergenic 30.0%
CAAATTCTACATTCAATTGC+AGG - chr5_2:43888915-43888934 Msa0771430:CDS 30.0%
! CTATTTTCCAAAAGGTCACT+TGG - chr5_2:43887317-43887336 Msa0771430:CDS 35.0%
AAGATTGTTTCCATCTTCGT+CGG + chr5_2:43887541-43887560 None:intergenic 35.0%
CATGAAAACAATGGAATCGT+CGG + chr5_2:43887799-43887818 None:intergenic 35.0%
! GTTTTCATGAAAAACTCTGC+GGG - chr5_2:43887810-43887829 Msa0771430:intron 35.0%
!! TAATTGGTCTGATTTTGTGG+TGG - chr5_2:43887983-43888002 Msa0771430:intron 35.0%
ATGACGCTATGAAGATTGTT+TGG - chr5_2:43888021-43888040 Msa0771430:intron 35.0%
CTGAAGAATGTTCCAATTAG+GGG + chr5_2:43888132-43888151 None:intergenic 35.0%
CCTGAAGAATGTTCCAATTA+GGG + chr5_2:43888133-43888152 None:intergenic 35.0%
ACCTGAAGAATGTTCCAATT+AGG + chr5_2:43888134-43888153 None:intergenic 35.0%
ATTAAACGAAGAAATGGAGC+TGG - chr5_2:43888447-43888466 Msa0771430:CDS 35.0%
ATCTATGACTACAATACGTC+CGG + chr5_2:43888496-43888515 None:intergenic 35.0%
TCATAACAAAGCACAATGTC+CGG + chr5_2:43888549-43888568 None:intergenic 35.0%
TTATCATAGGTTAACTGGGA+TGG - chr5_2:43888750-43888769 Msa0771430:CDS 35.0%
!! TGAATGTAGAATTTGTTGGG+GGG + chr5_2:43888910-43888929 None:intergenic 35.0%
! CTATTTTCCAAAAGGTCACT+TGG - chr5_2:43887317-43887336 Msa0771430:CDS 35.0%
AAGATTGTTTCCATCTTCGT+CGG + chr5_2:43887541-43887560 None:intergenic 35.0%
CATGAAAACAATGGAATCGT+CGG + chr5_2:43887799-43887818 None:intergenic 35.0%
! GTTTTCATGAAAAACTCTGC+GGG - chr5_2:43887810-43887829 Msa0771430:intron 35.0%
!! TAATTGGTCTGATTTTGTGG+TGG - chr5_2:43887983-43888002 Msa0771430:intron 35.0%
ATGACGCTATGAAGATTGTT+TGG - chr5_2:43888021-43888040 Msa0771430:intron 35.0%
CTGAAGAATGTTCCAATTAG+GGG + chr5_2:43888132-43888151 None:intergenic 35.0%
CCTGAAGAATGTTCCAATTA+GGG + chr5_2:43888133-43888152 None:intergenic 35.0%
ACCTGAAGAATGTTCCAATT+AGG + chr5_2:43888134-43888153 None:intergenic 35.0%
ATTAAACGAAGAAATGGAGC+TGG - chr5_2:43888447-43888466 Msa0771430:CDS 35.0%
ATCTATGACTACAATACGTC+CGG + chr5_2:43888496-43888515 None:intergenic 35.0%
TCATAACAAAGCACAATGTC+CGG + chr5_2:43888549-43888568 None:intergenic 35.0%
TTATCATAGGTTAACTGGGA+TGG - chr5_2:43888750-43888769 Msa0771430:CDS 35.0%
!! TGAATGTAGAATTTGTTGGG+GGG + chr5_2:43888910-43888929 None:intergenic 35.0%
TAAACGACTGAGTTCAGCTT+TGG + chr5_2:43887297-43887316 None:intergenic 40.0%
GAGTTTGGCGAAAACTTCAT+CGG + chr5_2:43887454-43887473 None:intergenic 40.0%
AGATTGTTTCCATCTTCGTC+GGG + chr5_2:43887540-43887559 None:intergenic 40.0%
TTGTGTAAGAGTCTTGACGT+AGG + chr5_2:43887568-43887587 None:intergenic 40.0%
! CTTTTTCTCACCGATGTTCA+AGG - chr5_2:43887675-43887694 Msa0771430:intron 40.0%
TATAGTTGAACCTCCAGACT+TGG + chr5_2:43887701-43887720 None:intergenic 40.0%
TCTATCAGGATTCTTGCGAA+AGG + chr5_2:43887724-43887743 None:intergenic 40.0%
AGTTATCTGTTGGAATACGC+CGG - chr5_2:43887835-43887854 Msa0771430:intron 40.0%
ATAAAGAAGGAGGGTGAAGA+GGG - chr5_2:43887861-43887880 Msa0771430:intron 40.0%
TTTGAAGAATGATCAGTCCC+TGG - chr5_2:43888070-43888089 Msa0771430:CDS 40.0%
TTGAAGAATGATCAGTCCCT+GGG - chr5_2:43888071-43888090 Msa0771430:CDS 40.0%
CGAAGAAGGATTAGACACAT+TGG + chr5_2:43888105-43888124 None:intergenic 40.0%
CAATTAGGGGAATTCGAAGA+AGG + chr5_2:43888119-43888138 None:intergenic 40.0%
CTTCTTCGAATTCCCCTAAT+TGG - chr5_2:43888117-43888136 Msa0771430:CDS 40.0%
CCCTAATTGGAACATTCTTC+AGG - chr5_2:43888130-43888149 Msa0771430:CDS 40.0%
TATGTATAGCTTTCTCCGAG+TGG - chr5_2:43888370-43888389 Msa0771430:CDS 40.0%
TTGACTGCAAACAGTTAGTC+CGG - chr5_2:43888474-43888493 Msa0771430:CDS 40.0%
GTTCGAGACTTAATGTGGTA+TGG + chr5_2:43888583-43888602 None:intergenic 40.0%
TTTGGATTCTGCGGGATATT+AGG + chr5_2:43888777-43888796 None:intergenic 40.0%
TTGACTAGGTTTGGATTCTG+CGG + chr5_2:43888786-43888805 None:intergenic 40.0%
ATCCAAACCTAGTCAATCCT+TGG - chr5_2:43888790-43888809 Msa0771430:CDS 40.0%
! AAGTCTAGGAGCTTTTGTTG+AGG + chr5_2:43888874-43888893 None:intergenic 40.0%
TAAACGACTGAGTTCAGCTT+TGG + chr5_2:43887297-43887316 None:intergenic 40.0%
GAGTTTGGCGAAAACTTCAT+CGG + chr5_2:43887454-43887473 None:intergenic 40.0%
AGATTGTTTCCATCTTCGTC+GGG + chr5_2:43887540-43887559 None:intergenic 40.0%
TTGTGTAAGAGTCTTGACGT+AGG + chr5_2:43887568-43887587 None:intergenic 40.0%
! CTTTTTCTCACCGATGTTCA+AGG - chr5_2:43887675-43887694 Msa0771430:intron 40.0%
TATAGTTGAACCTCCAGACT+TGG + chr5_2:43887701-43887720 None:intergenic 40.0%
TCTATCAGGATTCTTGCGAA+AGG + chr5_2:43887724-43887743 None:intergenic 40.0%
AGTTATCTGTTGGAATACGC+CGG - chr5_2:43887835-43887854 Msa0771430:intron 40.0%
ATAAAGAAGGAGGGTGAAGA+GGG - chr5_2:43887861-43887880 Msa0771430:intron 40.0%
TTTGAAGAATGATCAGTCCC+TGG - chr5_2:43888070-43888089 Msa0771430:CDS 40.0%
TTGAAGAATGATCAGTCCCT+GGG - chr5_2:43888071-43888090 Msa0771430:CDS 40.0%
CGAAGAAGGATTAGACACAT+TGG + chr5_2:43888105-43888124 None:intergenic 40.0%
CAATTAGGGGAATTCGAAGA+AGG + chr5_2:43888119-43888138 None:intergenic 40.0%
CTTCTTCGAATTCCCCTAAT+TGG - chr5_2:43888117-43888136 Msa0771430:CDS 40.0%
CCCTAATTGGAACATTCTTC+AGG - chr5_2:43888130-43888149 Msa0771430:CDS 40.0%
TATGTATAGCTTTCTCCGAG+TGG - chr5_2:43888370-43888389 Msa0771430:CDS 40.0%
TTGACTGCAAACAGTTAGTC+CGG - chr5_2:43888474-43888493 Msa0771430:CDS 40.0%
GTTCGAGACTTAATGTGGTA+TGG + chr5_2:43888583-43888602 None:intergenic 40.0%
TTTGGATTCTGCGGGATATT+AGG + chr5_2:43888777-43888796 None:intergenic 40.0%
TTGACTAGGTTTGGATTCTG+CGG + chr5_2:43888786-43888805 None:intergenic 40.0%
ATCCAAACCTAGTCAATCCT+TGG - chr5_2:43888790-43888809 Msa0771430:CDS 40.0%
! AAGTCTAGGAGCTTTTGTTG+AGG + chr5_2:43888874-43888893 None:intergenic 40.0%
GCGTTGTCGAAGGCAAAATT+TGG - chr5_2:43887241-43887260 Msa0771430:CDS 45.0%
AAAATTTGGCAGACATGCGC+CGG - chr5_2:43887255-43887274 Msa0771430:CDS 45.0%
! GCATGTTCCAAGTGACCTTT+TGG + chr5_2:43887327-43887346 None:intergenic 45.0%
TGAAGAAAGGAGACTGTCTG+AGG + chr5_2:43887366-43887385 None:intergenic 45.0%
CTATCTCTGCATCATCTCAG+CGG - chr5_2:43887404-43887423 Msa0771430:CDS 45.0%
CTCACTCCGGTAACAATTGA+CGG - chr5_2:43887477-43887496 Msa0771430:intron 45.0%
ACACCACCGTCAATTGTTAC+CGG + chr5_2:43887486-43887505 None:intergenic 45.0%
TAACAATCCAATGCCGTCTC+AGG - chr5_2:43887650-43887669 Msa0771430:intron 45.0%
GTGAGAAAAAGCTCCTGAGA+CGG + chr5_2:43887666-43887685 None:intergenic 45.0%
GTAGAGAAACGGTGTCTATC+AGG + chr5_2:43887738-43887757 None:intergenic 45.0%
GATAGACACCGTTTCTCTAC+TGG - chr5_2:43887738-43887757 Msa0771430:intron 45.0%
!!! TACTGGCTGGACTGGTTTTA+GGG - chr5_2:43887755-43887774 Msa0771430:intron 45.0%
AATACGCCGGCACATAAAGA+AGG - chr5_2:43887848-43887867 Msa0771430:intron 45.0%
CATAAAGAAGGAGGGTGAAG+AGG - chr5_2:43887860-43887879 Msa0771430:intron 45.0%
CACATTGGAGATTGTTCCCA+GGG + chr5_2:43888090-43888109 None:intergenic 45.0%
ACACATTGGAGATTGTTCCC+AGG + chr5_2:43888091-43888110 None:intergenic 45.0%
TCACTTGAAGCCAGTTAGTC+CGG - chr5_2:43888527-43888546 Msa0771430:CDS 45.0%
TGACTAGGTTTGGATTCTGC+GGG + chr5_2:43888785-43888804 None:intergenic 45.0%
TGCCAAGGATTGACTAGGTT+TGG + chr5_2:43888795-43888814 None:intergenic 45.0%
AAACCTAGTCAATCCTTGGC+AGG - chr5_2:43888794-43888813 Msa0771430:CDS 45.0%
TTGGAAACTTCAACCTGCCA+AGG + chr5_2:43888810-43888829 None:intergenic 45.0%
TGTTGAGGTGAGATTGACAG+TGG + chr5_2:43888859-43888878 None:intergenic 45.0%
GATGAACTCTCAGCAAGTCT+AGG + chr5_2:43888888-43888907 None:intergenic 45.0%
GCGTTGTCGAAGGCAAAATT+TGG - chr5_2:43887241-43887260 Msa0771430:CDS 45.0%
AAAATTTGGCAGACATGCGC+CGG - chr5_2:43887255-43887274 Msa0771430:CDS 45.0%
! GCATGTTCCAAGTGACCTTT+TGG + chr5_2:43887327-43887346 None:intergenic 45.0%
TGAAGAAAGGAGACTGTCTG+AGG + chr5_2:43887366-43887385 None:intergenic 45.0%
CTATCTCTGCATCATCTCAG+CGG - chr5_2:43887404-43887423 Msa0771430:CDS 45.0%
CTCACTCCGGTAACAATTGA+CGG - chr5_2:43887477-43887496 Msa0771430:intron 45.0%
ACACCACCGTCAATTGTTAC+CGG + chr5_2:43887486-43887505 None:intergenic 45.0%
TAACAATCCAATGCCGTCTC+AGG - chr5_2:43887650-43887669 Msa0771430:intron 45.0%
GTGAGAAAAAGCTCCTGAGA+CGG + chr5_2:43887666-43887685 None:intergenic 45.0%
GTAGAGAAACGGTGTCTATC+AGG + chr5_2:43887738-43887757 None:intergenic 45.0%
GATAGACACCGTTTCTCTAC+TGG - chr5_2:43887738-43887757 Msa0771430:intron 45.0%
!!! TACTGGCTGGACTGGTTTTA+GGG - chr5_2:43887755-43887774 Msa0771430:intron 45.0%
AATACGCCGGCACATAAAGA+AGG - chr5_2:43887848-43887867 Msa0771430:intron 45.0%
CATAAAGAAGGAGGGTGAAG+AGG - chr5_2:43887860-43887879 Msa0771430:intron 45.0%
CACATTGGAGATTGTTCCCA+GGG + chr5_2:43888090-43888109 None:intergenic 45.0%
ACACATTGGAGATTGTTCCC+AGG + chr5_2:43888091-43888110 None:intergenic 45.0%
TCACTTGAAGCCAGTTAGTC+CGG - chr5_2:43888527-43888546 Msa0771430:CDS 45.0%
TGACTAGGTTTGGATTCTGC+GGG + chr5_2:43888785-43888804 None:intergenic 45.0%
TGCCAAGGATTGACTAGGTT+TGG + chr5_2:43888795-43888814 None:intergenic 45.0%
AAACCTAGTCAATCCTTGGC+AGG - chr5_2:43888794-43888813 Msa0771430:CDS 45.0%
TTGGAAACTTCAACCTGCCA+AGG + chr5_2:43888810-43888829 None:intergenic 45.0%
TGTTGAGGTGAGATTGACAG+TGG + chr5_2:43888859-43888878 None:intergenic 45.0%
GATGAACTCTCAGCAAGTCT+AGG + chr5_2:43888888-43888907 None:intergenic 45.0%
! ATTTTGCCTTCGACAACGCG+TGG + chr5_2:43887240-43887259 None:intergenic 50.0%
!! AGCTTTGGAATCTTGACGCC+GGG + chr5_2:43887282-43887301 None:intergenic 50.0%
!! CAGCTTTGGAATCTTGACGC+CGG + chr5_2:43887283-43887302 None:intergenic 50.0%
! AGGAGACTGTCTGAGGTAGT+GGG + chr5_2:43887359-43887378 None:intergenic 50.0%
! AAGGAGACTGTCTGAGGTAG+TGG + chr5_2:43887360-43887379 None:intergenic 50.0%
CGCTGAGATGATGCAGAGAT+AGG + chr5_2:43887406-43887425 None:intergenic 50.0%
CTCAGCGGTTGATCTTCTTG+CGG - chr5_2:43887419-43887438 Msa0771430:intron 50.0%
GCGAAAACTTCATCGGTGTG+AGG + chr5_2:43887447-43887466 None:intergenic 50.0%
TACCGGAGTGAGGATGAGTT+TGG + chr5_2:43887469-43887488 None:intergenic 50.0%
CGTCAATTGTTACCGGAGTG+AGG + chr5_2:43887479-43887498 None:intergenic 50.0%
ACTCCGGTAACAATTGACGG+TGG - chr5_2:43887480-43887499 Msa0771430:intron 50.0%
AAAAGCTCCTGAGACGGCAT+TGG + chr5_2:43887660-43887679 None:intergenic 50.0%
!! CCAGACTTGGCCTTGAACAT+CGG + chr5_2:43887688-43887707 None:intergenic 50.0%
ATGTTCAAGGCCAAGTCTGG+AGG - chr5_2:43887688-43887707 Msa0771430:intron 50.0%
CAGTCCAGCCAGTAGAGAAA+CGG + chr5_2:43887749-43887768 None:intergenic 50.0%
!!! CTACTGGCTGGACTGGTTTT+AGG - chr5_2:43887754-43887773 Msa0771430:intron 50.0%
TCTGCGGGAGAGTTATCTGT+TGG - chr5_2:43887825-43887844 Msa0771430:intron 50.0%
CACCCTCCTTCTTTATGTGC+CGG + chr5_2:43887857-43887876 None:intergenic 50.0%
GAGGGAGAAGTTAACCGAGT+CGG - chr5_2:43887893-43887912 Msa0771430:intron 50.0%
!!! GGTTTTGGAAGCTGCGGAAT+TGG - chr5_2:43887917-43887936 Msa0771430:intron 50.0%
TTTGGAAGCTGCGGAATTGG+CGG - chr5_2:43887920-43887939 Msa0771430:intron 50.0%
AGCACAATGTCCGGACTAAC+TGG + chr5_2:43888540-43888559 None:intergenic 50.0%
CAACCTGCCAAGGATTGACT+AGG + chr5_2:43888800-43888819 None:intergenic 50.0%
! AGTCGAAGGTGCAGGTATGT+TGG + chr5_2:43888829-43888848 None:intergenic 50.0%
TGAGGTGAGATTGACAGTGG+AGG + chr5_2:43888856-43888875 None:intergenic 50.0%
CATTCAATTGCAGGGTCGAG+TGG - chr5_2:43888924-43888943 Msa0771430:CDS 50.0%
! ATTTTGCCTTCGACAACGCG+TGG + chr5_2:43887240-43887259 None:intergenic 50.0%
!! AGCTTTGGAATCTTGACGCC+GGG + chr5_2:43887282-43887301 None:intergenic 50.0%
!! CAGCTTTGGAATCTTGACGC+CGG + chr5_2:43887283-43887302 None:intergenic 50.0%
! AGGAGACTGTCTGAGGTAGT+GGG + chr5_2:43887359-43887378 None:intergenic 50.0%
! AAGGAGACTGTCTGAGGTAG+TGG + chr5_2:43887360-43887379 None:intergenic 50.0%
CGCTGAGATGATGCAGAGAT+AGG + chr5_2:43887406-43887425 None:intergenic 50.0%
CTCAGCGGTTGATCTTCTTG+CGG - chr5_2:43887419-43887438 Msa0771430:intron 50.0%
GCGAAAACTTCATCGGTGTG+AGG + chr5_2:43887447-43887466 None:intergenic 50.0%
TACCGGAGTGAGGATGAGTT+TGG + chr5_2:43887469-43887488 None:intergenic 50.0%
CGTCAATTGTTACCGGAGTG+AGG + chr5_2:43887479-43887498 None:intergenic 50.0%
ACTCCGGTAACAATTGACGG+TGG - chr5_2:43887480-43887499 Msa0771430:intron 50.0%
AAAAGCTCCTGAGACGGCAT+TGG + chr5_2:43887660-43887679 None:intergenic 50.0%
!! CCAGACTTGGCCTTGAACAT+CGG + chr5_2:43887688-43887707 None:intergenic 50.0%
ATGTTCAAGGCCAAGTCTGG+AGG - chr5_2:43887688-43887707 Msa0771430:intron 50.0%
CAGTCCAGCCAGTAGAGAAA+CGG + chr5_2:43887749-43887768 None:intergenic 50.0%
!!! CTACTGGCTGGACTGGTTTT+AGG - chr5_2:43887754-43887773 Msa0771430:intron 50.0%
TCTGCGGGAGAGTTATCTGT+TGG - chr5_2:43887825-43887844 Msa0771430:intron 50.0%
CACCCTCCTTCTTTATGTGC+CGG + chr5_2:43887857-43887876 None:intergenic 50.0%
GAGGGAGAAGTTAACCGAGT+CGG - chr5_2:43887893-43887912 Msa0771430:intron 50.0%
!!! GGTTTTGGAAGCTGCGGAAT+TGG - chr5_2:43887917-43887936 Msa0771430:intron 50.0%
TTTGGAAGCTGCGGAATTGG+CGG - chr5_2:43887920-43887939 Msa0771430:intron 50.0%
AGCACAATGTCCGGACTAAC+TGG + chr5_2:43888540-43888559 None:intergenic 50.0%
CAACCTGCCAAGGATTGACT+AGG + chr5_2:43888800-43888819 None:intergenic 50.0%
! AGTCGAAGGTGCAGGTATGT+TGG + chr5_2:43888829-43888848 None:intergenic 50.0%
TGAGGTGAGATTGACAGTGG+AGG + chr5_2:43888856-43888875 None:intergenic 50.0%
CATTCAATTGCAGGGTCGAG+TGG - chr5_2:43888924-43888943 Msa0771430:CDS 50.0%
!! GCTTTGGAATCTTGACGCCG+GGG + chr5_2:43887281-43887300 None:intergenic 55.0%
!! ACTGTCTGAGGTAGTGGGGA+AGG + chr5_2:43887354-43887373 None:intergenic 55.0%
! GGAGACTGTCTGAGGTAGTG+GGG + chr5_2:43887358-43887377 None:intergenic 55.0%
CGCCAAACTCATCCTCACTC+CGG - chr5_2:43887464-43887483 Msa0771430:intron 55.0%
! GAGGAGCTGGTTCTTGGACT+TGG + chr5_2:43887509-43887528 None:intergenic 55.0%
TTGTACCTCGTGAATGCGCG+CGG - chr5_2:43887610-43887629 Msa0771430:intron 55.0%
CCGATGTTCAAGGCCAAGTC+TGG - chr5_2:43887685-43887704 Msa0771430:intron 55.0%
GACACCGTTTCTCTACTGGC+TGG - chr5_2:43887742-43887761 Msa0771430:intron 55.0%
! CGTTTCTCTACTGGCTGGAC+TGG - chr5_2:43887747-43887766 Msa0771430:intron 55.0%
ACGCCGGCACATAAAGAAGG+AGG - chr5_2:43887851-43887870 Msa0771430:intron 55.0%
CGCCGGCACATAAAGAAGGA+GGG - chr5_2:43887852-43887871 Msa0771430:intron 55.0%
AAGAAGGAGGGTGAAGAGGG+AGG - chr5_2:43887864-43887883 Msa0771430:intron 55.0%
TGAAGAGGGAGGCTGGAAGA+GGG - chr5_2:43887875-43887894 Msa0771430:intron 55.0%
GGAGAAGTTAACCGAGTCGG+CGG - chr5_2:43887896-43887915 Msa0771430:intron 55.0%
! GTTAACCGAGTCGGCGGTTT+TGG - chr5_2:43887902-43887921 Msa0771430:intron 55.0%
! AGCTTCCAAAACCGCCGACT+CGG + chr5_2:43887910-43887929 None:intergenic 55.0%
ACAGTGGAGGAGGAAGTCGA+AGG + chr5_2:43888843-43888862 None:intergenic 55.0%
GGTGAGATTGACAGTGGAGG+AGG + chr5_2:43888853-43888872 None:intergenic 55.0%
!! GCTTTGGAATCTTGACGCCG+GGG + chr5_2:43887281-43887300 None:intergenic 55.0%
!! ACTGTCTGAGGTAGTGGGGA+AGG + chr5_2:43887354-43887373 None:intergenic 55.0%
! GGAGACTGTCTGAGGTAGTG+GGG + chr5_2:43887358-43887377 None:intergenic 55.0%
CGCCAAACTCATCCTCACTC+CGG - chr5_2:43887464-43887483 Msa0771430:intron 55.0%
! GAGGAGCTGGTTCTTGGACT+TGG + chr5_2:43887509-43887528 None:intergenic 55.0%
TTGTACCTCGTGAATGCGCG+CGG - chr5_2:43887610-43887629 Msa0771430:intron 55.0%
CCGATGTTCAAGGCCAAGTC+TGG - chr5_2:43887685-43887704 Msa0771430:intron 55.0%
GACACCGTTTCTCTACTGGC+TGG - chr5_2:43887742-43887761 Msa0771430:intron 55.0%
! CGTTTCTCTACTGGCTGGAC+TGG - chr5_2:43887747-43887766 Msa0771430:intron 55.0%
ACGCCGGCACATAAAGAAGG+AGG - chr5_2:43887851-43887870 Msa0771430:intron 55.0%
CGCCGGCACATAAAGAAGGA+GGG - chr5_2:43887852-43887871 Msa0771430:intron 55.0%
AAGAAGGAGGGTGAAGAGGG+AGG - chr5_2:43887864-43887883 Msa0771430:intron 55.0%
TGAAGAGGGAGGCTGGAAGA+GGG - chr5_2:43887875-43887894 Msa0771430:intron 55.0%
GGAGAAGTTAACCGAGTCGG+CGG - chr5_2:43887896-43887915 Msa0771430:intron 55.0%
! GTTAACCGAGTCGGCGGTTT+TGG - chr5_2:43887902-43887921 Msa0771430:intron 55.0%
! AGCTTCCAAAACCGCCGACT+CGG + chr5_2:43887910-43887929 None:intergenic 55.0%
ACAGTGGAGGAGGAAGTCGA+AGG + chr5_2:43888843-43888862 None:intergenic 55.0%
GGTGAGATTGACAGTGGAGG+AGG + chr5_2:43888853-43888872 None:intergenic 55.0%
! CCACAGGAGGAGCTGGTTCT+TGG + chr5_2:43887515-43887534 None:intergenic 60.0%
CCAAGAACCAGCTCCTCCTG+TGG - chr5_2:43887512-43887531 Msa0771430:intron 60.0%
TCTTCGTCGGGAACCACAGG+AGG + chr5_2:43887528-43887547 None:intergenic 60.0%
CCATCTTCGTCGGGAACCAC+AGG + chr5_2:43887531-43887550 None:intergenic 60.0%
CCTGTGGTTCCCGACGAAGA+TGG - chr5_2:43887528-43887547 Msa0771430:intron 60.0%
ATCAACCGCGCGCATTCACG+AGG + chr5_2:43887618-43887637 None:intergenic 60.0%
GTGAAGAGGGAGGCTGGAAG+AGG - chr5_2:43887874-43887893 Msa0771430:intron 60.0%
!!! GTCGGCGGTTTTGGAAGCTG+CGG - chr5_2:43887911-43887930 Msa0771430:intron 60.0%
! GAGGAGGAAGTCGAAGGTGC+AGG + chr5_2:43888837-43888856 None:intergenic 60.0%
! CCACAGGAGGAGCTGGTTCT+TGG + chr5_2:43887515-43887534 None:intergenic 60.0%
CCAAGAACCAGCTCCTCCTG+TGG - chr5_2:43887512-43887531 Msa0771430:intron 60.0%
TCTTCGTCGGGAACCACAGG+AGG + chr5_2:43887528-43887547 None:intergenic 60.0%
CCATCTTCGTCGGGAACCAC+AGG + chr5_2:43887531-43887550 None:intergenic 60.0%
CCTGTGGTTCCCGACGAAGA+TGG - chr5_2:43887528-43887547 Msa0771430:intron 60.0%
ATCAACCGCGCGCATTCACG+AGG + chr5_2:43887618-43887637 None:intergenic 60.0%
GTGAAGAGGGAGGCTGGAAG+AGG - chr5_2:43887874-43887893 Msa0771430:intron 60.0%
!!! GTCGGCGGTTTTGGAAGCTG+CGG - chr5_2:43887911-43887930 Msa0771430:intron 60.0%
! GAGGAGGAAGTCGAAGGTGC+AGG + chr5_2:43888837-43888856 None:intergenic 60.0%
TCGACAACGCGTGGCTGAGG+CGG + chr5_2:43887231-43887250 None:intergenic 65.0%
CCTTCGACAACGCGTGGCTG+AGG + chr5_2:43887234-43887253 None:intergenic 65.0%
CCTCAGCCACGCGTTGTCGA+AGG - chr5_2:43887231-43887250 Msa0771430:CDS 65.0%
TGGAATCTTGACGCCGGGGC+CGG + chr5_2:43887277-43887296 None:intergenic 65.0%
TCGGGAACCACAGGAGGAGC+TGG + chr5_2:43887522-43887541 None:intergenic 65.0%
AGGAGGGTGAAGAGGGAGGC+TGG - chr5_2:43887868-43887887 Msa0771430:intron 65.0%
TCGACAACGCGTGGCTGAGG+CGG + chr5_2:43887231-43887250 None:intergenic 65.0%
CCTTCGACAACGCGTGGCTG+AGG + chr5_2:43887234-43887253 None:intergenic 65.0%
CCTCAGCCACGCGTTGTCGA+AGG - chr5_2:43887231-43887250 Msa0771430:CDS 65.0%
TGGAATCTTGACGCCGGGGC+CGG + chr5_2:43887277-43887296 None:intergenic 65.0%
TCGGGAACCACAGGAGGAGC+TGG + chr5_2:43887522-43887541 None:intergenic 65.0%
AGGAGGGTGAAGAGGGAGGC+TGG - chr5_2:43887868-43887887 Msa0771430:intron 65.0%
! TGGCAGACATGCGCCGGCCC+CGG - chr5_2:43887261-43887280 Msa0771430:CDS 75.0%
! TGGCAGACATGCGCCGGCCC+CGG - chr5_2:43887261-43887280 Msa0771430:CDS 75.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 43887219 43888965 43887219 ID=Msa0771430;Name=Msa0771430
chr5_2 mRNA 43887219 43888965 43887219 ID=Msa0771430-mRNA-1;Parent=Msa0771430;Name=Msa0771430-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|2|0|379
chr5_2 exon 43888033 43888965 43888033 ID=Msa0771430-mRNA-1:exon:13457;Parent=Msa0771430-mRNA-1
chr5_2 exon 43887219 43887425 43887219 ID=Msa0771430-mRNA-1:exon:13456;Parent=Msa0771430-mRNA-1
chr5_2 CDS 43888033 43888965 43888033 ID=Msa0771430-mRNA-1:cds;Parent=Msa0771430-mRNA-1
chr5_2 CDS 43887219 43887425 43887219 ID=Msa0771430-mRNA-1:cds;Parent=Msa0771430-mRNA-1
Gene Sequence

>Msa0771430

ATGTCTCTGCCGCCTCAGCCACGCGTTGTCGAAGGCAAAATTTGGCAGACATGCGCCGGCCCCGGCGTCAAGATTCCAAAGCTGAACTCAGTCGTTTACTATTTTCCAAAAGGTCACTTGGAACATGCATGTCCTTCCCCACTACCTCAGACAGTCTCCTTTCTTCATGATCTTCATTCTTCATCCTATCTCTGCATCATCTCAGCGGTTGATCTTCTTGCGGATCCTCACACCGATGAAGTTTTCGCCAAACTCATCCTCACTCCGGTAACAATTGACGGTGGTGTCCAAGTCCAAGAACCAGCTCCTCCTGTGGTTCCCGACGAAGATGGAAACAATCTTGTTTCCTACGTCAAGACTCTTACACAATCTGATTCTAATAATATATTCTTTGTACCTCGTGAATGCGCGCGGTTGATCTTTCCAAATTTTAACAATCCAATGCCGTCTCAGGAGCTTTTTCTCACCGATGTTCAAGGCCAAGTCTGGAGGTTCAACTATACCTTTCGCAAGAATCCTGATAGACACCGTTTCTCTACTGGCTGGACTGGTTTTAGGGACGACAAGAAACTCGTCGCCGACGATTCCATTGTTTTCATGAAAAACTCTGCGGGAGAGTTATCTGTTGGAATACGCCGGCACATAAAGAAGGAGGGTGAAGAGGGAGGCTGGAAGAGGGAGAAGTTAACCGAGTCGGCGGTTTTGGAAGCTGCGGAATTGGCGGAAGCGAACAAAGCGTTTGAAGTTGTGTATTATCCAAGTCATAATTGGTCTGATTTTGTGGTGGATGCTAAGACTGTTGATGACGCTATGAAGATTGTTTGGAATTCTGGGATGAGAGTGAAGCTTCTTTTGAAGAATGATCAGTCCCTGGGAACAATCTCCAATGTGTCTAATCCTTCTTCGAATTCCCCTAATTGGAACATTCTTCAGGTTAACTGGGATGGACCTAATATCCCGCAGAATCCAAACCTAGTCAATCCTTGGCAGGTTGAAGTTTCCAACATACCTGCACCTTCGACTTCCTCCTCCACTGTCAATCTCACCTCAACAAAAGCTCCTAGACTTGCTGAGAGTTCATCCCCCCAACAAATTCTACATTCAATTGCAGGGTCGAGTGGTACTTTGCCTGACGCGTAG
Protein sequence

>Msa0771430

MSLPPQPRVVEGKIWQTCAGPGVKIPKLNSVVYYFPKGHLEHACPSPLPQTVSFLHDLHSSSYLCIISAVDLLADPHTDEVFAKLILTPVTIDGGVQVQEPAPPVVPDEDGNNLVSYVKTLTQSDSNNIFFVPRECARLIFPNFNNPMPSQELFLTDVQGQVWRFNYTFRKNPDRHRFSTGWTGFRDDKKLVADDSIVFMKNSAGELSVGIRRHIKKEGEEGGWKREKLTESAVLEAAELAEANKAFEVVYYPSHNWSDFVVDAKTVDDAMKIVWNSGMRVKLLLKNDQSLGTISNVSNPSSNSPNWNILQVNWDGPNIPQNPNLVNPWQVEVSNIPAPSTSSSTVNLTSTKAPRLAESSSPQQILHSIAGSSGTLPDA*