AlfalfaGEDB | Msa0771490

M. sativa cultivar zhongmu-4 / Msa0771490

KEGG: -
GO: GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0771490	sp\|Q84WU6\|ARFQ_ARATH	39.092	573	287	12	1	527	1	557	8.90e-122	372

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0771490	G7K951	92.060	529	40	2	1	528	1	528	0.0	1001

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TFs/TRs:

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Gene ID	Type	Classification
Msa0771490	TF	B3-ARF

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0771490	MtrunA17_Chr5g0424931	92.060	529	40	2	1	528	1	528	0.0	1001
Msa0771490	MtrunA17_Chr1g0178011	54.111	523	162	8	8	526	1	449	5.68e-176	503
Msa0771490	MtrunA17_Chr5g0417281	49.726	547	207	11	14	528	6	516	2.96e-158	461
Msa0771490	MtrunA17_Chr5g0436761	48.752	521	187	10	14	522	7	459	1.64e-152	444
Msa0771490	MtrunA17_Chr3g0115271	45.357	560	247	15	13	527	13	558	1.42e-143	426
Msa0771490	MtrunA17_Chr5g0424741	47.339	545	188	13	8	480	1	518	3.16e-142	420
Msa0771490	MtrunA17_Chr2g0277461	47.002	517	189	13	16	524	10	449	7.24e-133	394
Msa0771490	MtrunA17_Chr5g0424801	53.418	395	138	10	8	392	1	359	1.34e-129	382
Msa0771490	MtrunA17_Chr5g0425261	54.082	392	140	9	8	392	1	359	1.40e-129	382
Msa0771490	MtrunA17_Chr2g0289221	53.846	351	117	9	6	347	7	321	7.44e-117	349

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0771490	AT1G77850.1	39.092	573	287	12	1	527	1	557	9.05e-123	372
Msa0771490	AT1G77850.2	39.092	573	287	12	1	527	1	557	1.76e-122	372
Msa0771490	AT4G30080.1	39.241	553	276	18	19	527	19	555	6.90e-97	308
Msa0771490	AT2G28350.2	39.440	464	208	13	19	432	10	450	4.85e-89	287
Msa0771490	AT2G28350.1	39.785	465	205	14	19	432	10	450	8.19e-89	287
Msa0771490	AT2G46530.1	36.842	361	193	8	18	370	20	353	3.65e-65	223
Msa0771490	AT2G46530.3	36.872	358	191	8	18	367	41	371	6.72e-65	222
Msa0771490	AT2G33860.1	34.865	370	185	7	19	367	54	388	1.97e-62	215
Msa0771490	AT3G61830.1	34.840	376	200	9	15	382	21	359	5.58e-62	214
Msa0771490	AT1G30330.3	35.733	389	203	10	14	385	20	378	5.33e-60	213

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Find 146 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTGGCAGACATGTGC+CGG	0.515291	5_2:+44210130	Msa0771490:CDS
AAAGGCAGTGAATAATAGGA+AGG	0.580552	5_2:+44210753	Msa0771490:CDS
AAAGTTTATTACTTCCCACA+AGG	0.663461	5_2:+44210184	Msa0771490:CDS
AAATCTGATTCTAATAACGG+CGG	0.706742	5_2:+44210442	Msa0771490:CDS
AAATTGCACCAATTAGCCCT+AGG	0.571867	5_2:-44210919	None:intergenic
AACACAAAAGAAGTTGGTTC+TGG	0.471305	5_2:+44213227	Msa0771490:CDS
AACAGCAACACAAAAGAAGT+TGG	0.534960	5_2:+44213221	Msa0771490:CDS
AACCAAACATTGTGGAATTG+CGG	0.559556	5_2:+44213005	Msa0771490:CDS
AACCGCAATTCCACAATGTT+TGG	0.327821	5_2:-44213007	None:intergenic
AACTCTATCATAGGAATGAA+GGG	0.519149	5_2:-44212966	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTTTATTACTTCCCACA+AGG	+	chr5_2:44210184-44210203	Msa0771490:CDS	30.0%
CAATAACAGTGATTGTTTGA+GGG	-	chr5_2:44210240-44210259	None:intergenic	30.0%
TCAATAACAGTGATTGTTTG+AGG	-	chr5_2:44210241-44210260	None:intergenic	30.0%
CAAACAATCACTGTTATTGA+TGG	+	chr5_2:44210241-44210260	Msa0771490:CDS	30.0%
AAATCTGATTCTAATAACGG+CGG	+	chr5_2:44210442-44210461	Msa0771490:CDS	30.0%
AATCAAAGGCAGTGAATAAT+AGG	+	chr5_2:44210749-44210768	Msa0771490:CDS	30.0%
GAAGATTCATCAATCTTCAA+AGG	-	chr5_2:44211015-44211034	None:intergenic	30.0%
TGAGAAGAATTCGATGAATA+CGG	+	chr5_2:44211290-44211309	Msa0771490:intron	30.0%
TAAAGAGACAGAAAAATCTG+CGG	-	chr5_2:44211530-44211549	None:intergenic	30.0%
GCAAGAAAATTATGTGACTA+TGG	+	chr5_2:44211706-44211725	Msa0771490:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	44210076	44213352	44210076	ID=Msa0771490;Name=Msa0771490
chr5_2	mRNA	44210076	44213352	44210076	ID=Msa0771490-mRNA-1;Parent=Msa0771490;Name=Msa0771490-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|0\|0\|1\|1\|1\|2\|0\|528
chr5_2	exon	44210076	44211113	44210076	ID=Msa0771490-mRNA-1:exon:13508;Parent=Msa0771490-mRNA-1
chr5_2	exon	44212804	44213352	44212804	ID=Msa0771490-mRNA-1:exon:13509;Parent=Msa0771490-mRNA-1
chr5_2	CDS	44210076	44211113	44210076	ID=Msa0771490-mRNA-1:cds;Parent=Msa0771490-mRNA-1
chr5_2	CDS	44212804	44213352	44212804	ID=Msa0771490-mRNA-1:cds;Parent=Msa0771490-mRNA-1

Gene Sequence

>Msa0771490

ATGTCTTCCCCACCGGCCACCATGTCTGTCCCTCCGGCACGCCGCGTTAAATCCAAAATCTGGCAGACATGTGCCGGTCCATCGGTGAACGTTCCAAAGGTACGTTCTAAAGTTTATTACTTCCCACAAGGTCACTTGGAACATGCCTGCCCTTCCCCTAACCCTCAAACAATCACTGTTATTGATGGTTACCGTCCTTCTTTTCCTTGTATCATCACGGCCGTTGATCTCCTGGCCGATCCTCACACCGATGAGGTCTTCGCCAAATTGCTACTCAGTCCGGTAACTGAAGGACAAGAACTTCCTGAGGTTGTTGATAAAGAAGAAGACGGTGATAAGGTTGTTTCCTTCGTAAAGACTCTTACAAAATCTGATTCTAATAACGGCGGTGGATTCTCTGTACCTCGCCTTTGTGCTGACTTGATCTTCCCCAAGCTTGACTTAAATTCTCCTTTTCCATCTCAGGAACTCTCCGTTACTGATGTTCATGACGGAGTTTGGAAGTTTGCTCATGTCTATCGAGGGAGACCCAAAAGACACCTTTTTACTACTGGTTGGACTCCGTTTGTGAACACGAAAAAACTCGTTGCTGGTGATTCTATTGTTTTCATGAAAAACACTGCCGGAGATATAGTTGTTGGAATCCGCAGAAACATGAAGTTTACTGCAGCTGAATCAAAGGCAGTGAATAATAGGAAGGGGGATGAGGGTAAAGAGAATGGTTTGGAGGTCAAAGGAGAGGGTTTTTCTCGAGGCGGGAGAAGGGGAATACTAACCGAGAAGGCGGTTATTGACGCAGTGGAGTTGGCGGAAAAGAATATGGCATTTGAAGTTATATATTACCCTAGGGCTAATTGGTGCAATTTTGTAGTAGATGCAAATGTTGTGGATGATGCTATGAAGATTGGTTGGGCATCTGGAATGAGAGTGAAGCTTCCTTTGAAGATTGATGAATCTTCAAATTCAAAGATGACATTTTTTCAGCCTCAAGGAACAATCTCTAATGTGTCCAGTGTCCCTAATTGGCGCATGCTTCAGGTTAATTGGGATGAACTTGAAATCTTGCAAAATCAAAACCGCGTCAATCCTTGGCAAGTTGAACTTATTTCCCACAATCCTGCAGTGCATCTACCATTTCTCTCAACAAAAAAACCTAGACTAGTTCAGGATTCTACCTTGTTTAGTGATAACAAGAGTGACCCCTTCATTCCTATGATAGAGTTCCCTATGAGATCTTTGAACCAAACATTGTGGAATTGCGGTTATTTTCCAGGAGGCATGCAGGGAGCCAGGCATGATCATTTATCTCTATCAGGTTTTTCCAACTCTTTGAATGATAATAGTTATGGTTTCTTTGTGAACAATCTAAACATTGACAGTCCCACATCTAACGACTTGTCGCCAAATAACATTAGTAGTTTGAACACCTTTGGGATAGATTTTGTTGAGACTCACAACAGCAACACAAAAGAAGTTGGTTCTGGTTCAATTAAGTTATTTGGTAAGATCATACAGACTGTTGAAAGTGATGTCCATCATTCTGGTAGCAAGGGAGAAGATTCCTCTAAGGGATCCAATGAAATTTGA

Protein sequence

>Msa0771490

MSSPPATMSVPPARRVKSKIWQTCAGPSVNVPKVRSKVYYFPQGHLEHACPSPNPQTITVIDGYRPSFPCIITAVDLLADPHTDEVFAKLLLSPVTEGQELPEVVDKEEDGDKVVSFVKTLTKSDSNNGGGFSVPRLCADLIFPKLDLNSPFPSQELSVTDVHDGVWKFAHVYRGRPKRHLFTTGWTPFVNTKKLVAGDSIVFMKNTAGDIVVGIRRNMKFTAAESKAVNNRKGDEGKENGLEVKGEGFSRGGRRGILTEKAVIDAVELAEKNMAFEVIYYPRANWCNFVVDANVVDDAMKIGWASGMRVKLPLKIDESSNSKMTFFQPQGTISNVSSVPNWRMLQVNWDELEILQNQNRVNPWQVELISHNPAVHLPFLSTKKPRLVQDSTLFSDNKSDPFIPMIEFPMRSLNQTLWNCGYFPGGMQGARHDHLSLSGFSNSLNDNSYGFFVNNLNIDSPTSNDLSPNNISSLNTFGIDFVETHNSNTKEVGSGSIKLFGKIIQTVESDVHHSGSKGEDSSKGSNEI*