AlfalfaGEDB | Msa0771540

M. sativa cultivar zhongmu-4 / Msa0771540

KEGG: -
GO: GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0771540	XP_024640656.1	91.885	382	23	2	1	379	1	377	0.0	710

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0771540	sp\|Q84WU6\|ARFQ_ARATH	34.492	374	190	12	8	336	15	378	1.07e-60	208

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0771540	A0A396HRU8	91.885	382	23	2	1	379	1	377	0.0	710

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TFs/TRs:

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Gene ID	Type	Classification
Msa0771540	TF	B3-ARF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0771540	MtrunA17_Chr5g0425261	91.885	382	23	2	1	379	1	377	0.0	710
Msa0771540	MtrunA17_Chr5g0424801	90.576	382	28	2	1	379	1	377	0.0	697
Msa0771540	MtrunA17_Chr5g0424741	54.916	417	135	8	1	367	1	414	2.86e-133	391
Msa0771540	MtrunA17_Chr5g0424931	54.430	395	139	9	1	364	8	392	1.10e-130	385
Msa0771540	MtrunA17_Chr1g0178011	53.806	381	140	10	1	364	1	362	1.17e-119	354
Msa0771540	MtrunA17_Chr2g0289221	52.071	338	126	14	1	321	9	327	1.25e-96	292
Msa0771540	MtrunA17_Chr5g0417281	49.112	338	149	8	8	335	7	331	5.62e-96	296
Msa0771540	MtrunA17_Chr5g0417211	51.506	332	126	11	1	315	1	314	5.39e-89	274
Msa0771540	MtrunA17_Chr2g0277461	45.052	384	180	14	6	374	7	374	3.14e-87	271
Msa0771540	MtrunA17_Chr5g0436761	45.665	346	159	10	6	336	6	337	9.15e-87	270

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0771540	AT1G77850.2	34.492	374	190	12	8	336	15	378	8.89e-62	209
Msa0771540	AT1G77850.1	34.492	374	190	12	8	336	15	378	1.09e-61	208
Msa0771540	AT4G30080.1	36.061	391	189	14	9	347	16	397	9.63e-56	194
Msa0771540	AT2G28350.1	33.503	394	187	14	9	340	7	387	1.80e-52	185
Msa0771540	AT2G28350.2	33.503	394	187	14	9	340	7	387	2.13e-52	185
Msa0771540	AT2G46530.3	31.129	363	223	9	12	358	42	393	3.33e-44	162
Msa0771540	AT2G46530.1	31.129	363	223	9	12	358	21	372	3.46e-44	161
Msa0771540	AT3G61830.1	30.595	353	213	11	12	345	25	364	3.61e-43	159
Msa0771540	AT1G34390.1	30.563	373	220	12	12	364	27	380	1.08e-39	149
Msa0771540	AT1G59750.2	31.088	386	227	13	12	374	22	391	1.12e-39	149

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Find 100 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATGGCAGATATGCGC+CGG	0.589425	5_2:-44316881	Msa0771540:CDS
AAACCTAGTCAATCCTTGGC+AGG	0.546100	5_2:-44315493	Msa0771540:CDS
AAAGTTTACTACTTCCCACG+AGG	0.761653	5_2:-44316827	Msa0771540:CDS
AACTGATGAGATTAAGGTTT+TGG	0.252605	5_2:-44316255	Msa0771540:CDS
AATCTCAGTAGATTACATAC+TGG	0.519388	5_2:-44316422	Msa0771540:CDS
AATCTTTGGAATCTTGACGT+CGG	0.630358	5_2:+44316856	None:intergenic
AATTCCGACAGATATCTTTC+CGG	0.425831	5_2:+44316331	None:intergenic
ACAGATGAAGCGGATGAAGG+AGG	0.630115	5_2:-44316287	Msa0771540:CDS
ACCCTGCCAAGGTTTGTTGG+GGG	0.559662	5_2:+44315379	None:intergenic
ACCTCAAGCATGCGCCAATT+AGG	0.318991	5_2:+44315993	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAATCTACTGAGATTTGCAT+AGG	+	chr5_2:44315840-44315859	None:intergenic	30.0%
AATCTCAGTAGATTACATAC+TGG	-	chr5_2:44315845-44315864	Msa0771540:intron	30.0%
ATGACAATTTCTCAGCTTAA+GGG	-	chr5_2:44316214-44316233	Msa0771540:CDS	30.0%
ATTCTTCTAATGTCCCTAAT+TGG	-	chr5_2:44316260-44316279	Msa0771540:CDS	30.0%
TAATCTACTGAGATTTGCAT+AGG	+	chr5_2:44315840-44315859	None:intergenic	30.0%
AATCTCAGTAGATTACATAC+TGG	-	chr5_2:44315845-44315864	Msa0771540:intron	30.0%
ATGACAATTTCTCAGCTTAA+GGG	-	chr5_2:44316214-44316233	Msa0771540:CDS	30.0%
ATTCTTCTAATGTCCCTAAT+TGG	-	chr5_2:44316260-44316279	Msa0771540:CDS	30.0%
AGGATCAACAAAGAGATCAA+CGG	+	chr5_2:44315555-44315574	None:intergenic	35.0%
GATGAAAACAACAGAATCGT+TGG	+	chr5_2:44315906-44315925	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	44315353	44316936	44315353	ID=Msa0771540;Name=Msa0771540
chr5_2	mRNA	44315353	44316936	44315353	ID=Msa0771540-mRNA-1;Parent=Msa0771540;Name=Msa0771540-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0\|0\|0\|1\|1\|1\|2\|0\|379
chr5_2	exon	44315995	44316936	44315995	ID=Msa0771540-mRNA-1:exon:13525;Parent=Msa0771540-mRNA-1
chr5_2	exon	44315353	44315550	44315353	ID=Msa0771540-mRNA-1:exon:13524;Parent=Msa0771540-mRNA-1
chr5_2	CDS	44315995	44316936	44315995	ID=Msa0771540-mRNA-1:cds;Parent=Msa0771540-mRNA-1
chr5_2	CDS	44315353	44315550	44315353	ID=Msa0771540-mRNA-1:cds;Parent=Msa0771540-mRNA-1

Gene Sequence

>Msa0771540

ATGTCTCATCCTCTGCCACCTCGTGTGGAACCCAAAATATGGCAGATATGCGCCGGCCCCGACGTCAAGATTCCAAAGATTCACTCTAAAGTTTACTACTTCCCACGAGGTCATCTGGAACATGCATGTTCTTCCCCTACTGCTGCCACAAGAACCATTCTTGATCGTTACCGTCCATCCATTCCATGCATCGTCTCTTCCGTTGATCTCTTTGTTGATCCTCACACCGACGAGGTCTTTGCCAAACTGCTCCTGACTCCCGTAACTGACCAAGAACCCCCTCCTCCTGTAGTTCCCGGCCAAGAAGACGATGATGGAGACAATCTTGTTTCCTATGTCAAGACTCTCACACAATCTGATTGTGCAAGAGTATTATGCGTACCTATCGAATGCTCTAACTTGATCTTTCCCAAGCTTGATTTGGACGAGTCTCAGAGCATCACTGTCACCGACCTTAAAAGCCGAGAATGGGGGTACACATATACCTATGCAAATCTCAGTAGATTACATACTGGCTGGTTAAATTTTGTACGAGAGAAGAAACTTGTCGCCAACGATTCTGTTGTTTTCATCAAAAACTCTGCCGGAAAGATATCTGTCGGAATTCGCAGGAACACCAAGTTCACTACAGATGAAGCGGATGAAGGAGGCGAGAATTTAACTGATGAGATTAAGGTTTTGGATGCAGTGGAATTGGCGGAGAAGAACACAGCATTTGATGTTGTGTATTATCCGACAGCTATTGGTTGCCGTGATTTTGTGGTGGATGCTAAGACTGTTGACGATGCCATGAAGATTGGTTGGAAATCTGGAATGAGAGTGAAACTTCCTTTGAAGAAATATGAATCTTCAAGTTCAAAGATGACAATTTCTCAGCTTAAGGGGACAATCTCTTTTGTCTTTAATGATTCTTCTAATGTCCCTAATTGGCGCATGCTTGAGGTTAACTGGGATGGACTTGATTTCCCGCAGAATCCAAACCTAGTCAATCCTTGGCAGGTTGAAGTTTACAACATACCTGCACCTTTGACTTCCTCCTCCACCGTCAACTCCGCCTCAAGAAAAACTCCTAGACTTGCTGAGAGTTCATCCCCCCAACAAACCTTGGCAGGGTCGAGTGGTACTTTGCCTGACACATAG

Protein sequence

>Msa0771540

MSHPLPPRVEPKIWQICAGPDVKIPKIHSKVYYFPRGHLEHACSSPTAATRTILDRYRPSIPCIVSSVDLFVDPHTDEVFAKLLLTPVTDQEPPPPVVPGQEDDDGDNLVSYVKTLTQSDCARVLCVPIECSNLIFPKLDLDESQSITVTDLKSREWGYTYTYANLSRLHTGWLNFVREKKLVANDSVVFIKNSAGKISVGIRRNTKFTTDEADEGGENLTDEIKVLDAVELAEKNTAFDVVYYPTAIGCRDFVVDAKTVDDAMKIGWKSGMRVKLPLKKYESSSSKMTISQLKGTISFVFNDSSNVPNWRMLEVNWDGLDFPQNPNLVNPWQVEVYNIPAPLTSSSTVNSASRKTPRLAESSSPQQTLAGSSGTLPDT*