Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772130 | XP_003612667.1 | 89.787 | 235 | 21 | 2 | 3 | 237 | 2 | 233 | 1.05e-142 | 409 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772130 | sp|Q8S9H7|DIV_ANTMA | 38.674 | 181 | 92 | 5 | 30 | 204 | 65 | 232 | 1.66e-25 | 104 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772130 | G7K885 | 89.787 | 235 | 21 | 2 | 3 | 237 | 2 | 233 | 5.00e-143 | 409 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0772130 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772130 | MtrunA17_Chr5g0409841 | 89.787 | 235 | 21 | 2 | 3 | 237 | 2 | 233 | 9.63e-147 | 409 |
| Msa0772130 | MtrunA17_Chr5g0440731 | 57.597 | 283 | 64 | 5 | 3 | 235 | 18 | 294 | 1.03e-91 | 271 |
| Msa0772130 | MtrunA17_Chr5g0440741 | 57.244 | 283 | 60 | 7 | 3 | 235 | 18 | 289 | 1.84e-88 | 263 |
| Msa0772130 | MtrunA17_Chr5g0409831 | 57.959 | 245 | 74 | 5 | 3 | 235 | 2 | 229 | 1.29e-83 | 248 |
| Msa0772130 | MtrunA17_Chr1g0210471 | 41.333 | 150 | 70 | 4 | 59 | 204 | 85 | 220 | 1.43e-25 | 100 |
| Msa0772130 | MtrunA17_Chr1g0162081 | 53.333 | 90 | 39 | 2 | 82 | 171 | 110 | 196 | 5.28e-25 | 100 |
| Msa0772130 | MtrunA17_Chr5g0436501 | 37.714 | 175 | 91 | 4 | 30 | 193 | 66 | 233 | 4.05e-24 | 97.1 |
| Msa0772130 | MtrunA17_Chr4g0062741 | 32.683 | 205 | 105 | 6 | 29 | 206 | 45 | 243 | 1.42e-23 | 96.3 |
| Msa0772130 | MtrunA17_Chr7g0241761 | 44.094 | 127 | 58 | 4 | 84 | 208 | 129 | 244 | 1.30e-22 | 94.0 |
| Msa0772130 | MtrunA17_Chr3g0104071 | 43.902 | 123 | 61 | 2 | 85 | 207 | 137 | 251 | 1.79e-22 | 93.6 |
| Msa0772130 | MtrunA17_Chr5g0429521 | 56.790 | 81 | 32 | 2 | 85 | 164 | 122 | 200 | 4.75e-22 | 92.4 |
| Msa0772130 | MtrunA17_Chr4g0055931 | 38.793 | 116 | 67 | 2 | 45 | 160 | 47 | 158 | 7.43e-22 | 92.0 |
| Msa0772130 | MtrunA17_Chr2g0331031 | 54.286 | 70 | 30 | 1 | 91 | 160 | 105 | 172 | 1.60e-20 | 88.6 |
| Msa0772130 | MtrunA17_Chr3g0135671 | 43.363 | 113 | 58 | 3 | 62 | 171 | 59 | 168 | 2.95e-20 | 85.9 |
| Msa0772130 | MtrunA17_Chr8g0365011 | 39.316 | 117 | 54 | 2 | 65 | 169 | 67 | 178 | 6.07e-19 | 83.6 |
| Msa0772130 | MtrunA17_Chr6g0488471 | 52.857 | 70 | 31 | 1 | 91 | 160 | 93 | 160 | 1.04e-18 | 82.8 |
| Msa0772130 | MtrunA17_Chr5g0415191 | 51.852 | 81 | 31 | 2 | 66 | 142 | 73 | 149 | 5.31e-18 | 81.3 |
| Msa0772130 | MtrunA17_Chr8g0389241 | 51.429 | 70 | 31 | 1 | 91 | 160 | 101 | 167 | 7.88e-18 | 80.5 |
| Msa0772130 | MtrunA17_Chr4g0059701 | 55.738 | 61 | 27 | 0 | 81 | 141 | 70 | 130 | 1.07e-17 | 80.1 |
| Msa0772130 | MtrunA17_Chr8g0364731 | 51.515 | 66 | 32 | 0 | 104 | 169 | 10 | 75 | 3.19e-17 | 76.6 |
| Msa0772130 | MtrunA17_Chr3g0092621 | 42.105 | 76 | 42 | 1 | 90 | 165 | 79 | 152 | 3.37e-16 | 73.9 |
| Msa0772130 | MtrunA17_Chr1g0192061 | 38.060 | 134 | 62 | 4 | 37 | 169 | 22 | 135 | 8.82e-16 | 72.8 |
| Msa0772130 | MtrunA17_Chr5g0432921 | 50.000 | 88 | 38 | 3 | 96 | 182 | 114 | 196 | 9.28e-16 | 73.6 |
| Msa0772130 | MtrunA17_Chr8g0370121 | 47.761 | 67 | 35 | 0 | 90 | 156 | 95 | 161 | 8.78e-15 | 71.2 |
| Msa0772130 | MtrunA17_Chr6g0452791 | 42.500 | 80 | 46 | 0 | 95 | 174 | 80 | 159 | 1.55e-14 | 69.3 |
| Msa0772130 | MtrunA17_Chr5g0432941 | 39.024 | 123 | 65 | 4 | 65 | 182 | 79 | 196 | 2.29e-14 | 69.7 |
| Msa0772130 | MtrunA17_Chr5g0409951 | 42.000 | 100 | 41 | 3 | 2 | 99 | 25 | 109 | 2.89e-13 | 67.4 |
| Msa0772130 | MtrunA17_Chr8g0370131 | 41.096 | 73 | 43 | 0 | 90 | 162 | 98 | 170 | 3.50e-13 | 66.6 |
| Msa0772130 | MtrunA17_Chr3g0113121 | 47.500 | 80 | 34 | 3 | 96 | 168 | 96 | 174 | 8.22e-13 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772130 | AT5G08520.1 | 44.355 | 124 | 55 | 2 | 60 | 171 | 71 | 192 | 7.01e-26 | 102 |
| Msa0772130 | AT5G23650.1 | 44.444 | 117 | 60 | 2 | 55 | 171 | 83 | 194 | 1.96e-23 | 97.1 |
| Msa0772130 | AT5G04760.1 | 53.012 | 83 | 37 | 1 | 80 | 162 | 84 | 164 | 2.86e-23 | 94.0 |
| Msa0772130 | AT3G10580.2 | 33.511 | 188 | 98 | 7 | 22 | 206 | 39 | 202 | 2.87e-23 | 95.1 |
| Msa0772130 | AT3G10580.1 | 33.511 | 188 | 98 | 7 | 22 | 206 | 39 | 202 | 7.95e-23 | 94.4 |
| Msa0772130 | AT5G58900.1 | 60.000 | 75 | 27 | 2 | 91 | 164 | 137 | 209 | 1.25e-22 | 94.0 |
| Msa0772130 | AT1G49010.1 | 50.000 | 86 | 40 | 2 | 87 | 171 | 126 | 209 | 1.40e-22 | 94.4 |
| Msa0772130 | AT2G38090.1 | 53.659 | 82 | 35 | 2 | 84 | 164 | 130 | 209 | 4.31e-21 | 89.7 |
| Msa0772130 | AT3G11280.2 | 40.769 | 130 | 69 | 3 | 83 | 206 | 115 | 242 | 1.23e-20 | 88.2 |
| Msa0772130 | AT3G11280.1 | 40.769 | 130 | 69 | 3 | 83 | 206 | 115 | 242 | 1.23e-20 | 88.2 |
| Msa0772130 | AT5G47390.1 | 46.465 | 99 | 46 | 3 | 84 | 181 | 89 | 181 | 1.35e-20 | 89.4 |
| Msa0772130 | AT5G61620.1 | 55.000 | 80 | 30 | 2 | 84 | 163 | 101 | 174 | 2.84e-20 | 87.8 |
| Msa0772130 | AT5G01200.1 | 56.000 | 75 | 30 | 2 | 91 | 164 | 142 | 214 | 4.36e-20 | 86.7 |
| Msa0772130 | AT5G05790.2 | 51.136 | 88 | 37 | 2 | 83 | 166 | 119 | 204 | 4.90e-19 | 84.0 |
| Msa0772130 | AT5G05790.1 | 51.136 | 88 | 37 | 2 | 83 | 166 | 119 | 204 | 4.90e-19 | 84.0 |
| Msa0772130 | AT5G56840.1 | 51.429 | 70 | 33 | 1 | 91 | 160 | 87 | 155 | 5.71e-18 | 80.1 |
| Msa0772130 | AT3G16350.1 | 52.703 | 74 | 33 | 2 | 70 | 142 | 112 | 184 | 1.11e-17 | 81.6 |
| Msa0772130 | AT1G70000.1 | 42.857 | 105 | 52 | 3 | 42 | 142 | 45 | 145 | 3.83e-17 | 78.6 |
| Msa0772130 | AT1G70000.2 | 42.857 | 105 | 52 | 3 | 42 | 142 | 45 | 145 | 3.83e-17 | 78.6 |
| Msa0772130 | AT1G19000.2 | 51.948 | 77 | 31 | 2 | 65 | 141 | 78 | 148 | 3.91e-17 | 79.0 |
| Msa0772130 | AT1G19000.1 | 51.948 | 77 | 31 | 2 | 65 | 141 | 78 | 148 | 3.91e-17 | 79.0 |
| Msa0772130 | AT1G74840.2 | 52.632 | 76 | 32 | 1 | 66 | 141 | 71 | 142 | 7.17e-17 | 77.4 |
| Msa0772130 | AT1G74840.1 | 52.632 | 76 | 32 | 1 | 66 | 141 | 71 | 142 | 8.29e-17 | 77.8 |
| Msa0772130 | AT4G09450.1 | 50.000 | 74 | 35 | 1 | 90 | 163 | 86 | 157 | 1.55e-16 | 75.9 |
| Msa0772130 | AT3G10590.1 | 41.667 | 96 | 52 | 2 | 69 | 163 | 84 | 176 | 1.04e-14 | 70.9 |
Find 43 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTACATCTTTCACATTT+TGG | 0.117923 | 5_2:+46279200 | None:intergenic |
| TGAGAAGATGCGCGACTTAT+TGG | 0.189075 | 5_2:-46278957 | Msa0772130:CDS |
| TGTGATGTATAGGTTGTTTC+TGG | 0.210646 | 5_2:-46279332 | Msa0772130:intron |
| TCCAATCGGTTCTACAATTC+CGG | 0.270420 | 5_2:-46278993 | Msa0772130:CDS |
| TTAGCTTCATTACTTCCTTC+AGG | 0.334459 | 5_2:+46280183 | None:intergenic |
| TTCTCAAGTTTCTCTATATC+CGG | 0.389268 | 5_2:+46278974 | None:intergenic |
| GCATGGCTAGCAATTTGAAT+TGG | 0.406712 | 5_2:+46279241 | None:intergenic |
| AGATATTTCAAAAGAATTTG+TGG | 0.448838 | 5_2:-46279275 | Msa0772130:CDS |
| TTGTGCTTGCTTTGTCCAAT+CGG | 0.452519 | 5_2:-46279007 | Msa0772130:CDS |
| AATGAGCGGACTTCAATTCA+AGG | 0.465890 | 5_2:-46280330 | Msa0772130:CDS |
| CGGAAGGAATACCATCTTGT+TGG | 0.479644 | 5_2:+46279104 | None:intergenic |
| CAAAGAGAGGGCGTAGGGAA+AGG | 0.497543 | 5_2:-46280119 | Msa0772130:CDS |
| AAAGAGAGGGCGTAGGGAAA+GGG | 0.499642 | 5_2:-46280118 | Msa0772130:CDS |
| TGTTATAGGAACATGGAAGA+AGG | 0.512958 | 5_2:-46280390 | None:intergenic |
| GGAAGTAATGAAGCTAACTT+AGG | 0.518501 | 5_2:-46280177 | Msa0772130:CDS |
| GACACAAGCTTAAACAAGAA+TGG | 0.520303 | 5_2:-46279151 | Msa0772130:CDS |
| ATGTGAAAGATGTAGAGAAG+AGG | 0.526828 | 5_2:-46279195 | Msa0772130:CDS |
| ATGTATAGGTTGTTTCTGGA+GGG | 0.542704 | 5_2:-46279328 | Msa0772130:intron |
| GTCTGTTGCATTCCTTGAGG+AGG | 0.550846 | 5_2:+46279061 | None:intergenic |
| TGTTCCATGCTATTCTCAGA+GGG | 0.555847 | 5_2:+46280306 | None:intergenic |
| TTGTTCCATGCTATTCTCAG+AGG | 0.560192 | 5_2:+46280305 | None:intergenic |
| TAGGGAAAGGGTACATTGGA+CGG | 0.560493 | 5_2:-46280106 | Msa0772130:CDS |
| TCCGGAATTGTAGAACCGAT+TGG | 0.561152 | 5_2:+46278992 | None:intergenic |
| TGTATAGGTTGTTTCTGGAG+GGG | 0.562950 | 5_2:-46279327 | Msa0772130:intron |
| GTGAAGCAAAGAGAGGGCGT+AGG | 0.568855 | 5_2:-46280125 | Msa0772130:CDS |
| TTCATTAGAGTTTAGCATTG+CGG | 0.571002 | 5_2:+46280233 | None:intergenic |
| GGCGTAGGGAAAGGGTACAT+TGG | 0.572735 | 5_2:-46280110 | Msa0772130:CDS |
| CTCGCTGTTGACCAACAAGA+TGG | 0.575706 | 5_2:-46279115 | Msa0772130:CDS |
| CAAAATGAGACTCCTCCTCA+AGG | 0.583176 | 5_2:-46279073 | Msa0772130:CDS |
| GGACAAAGCAAGCACAACAT+TGG | 0.587274 | 5_2:+46279013 | None:intergenic |
| GAAAGGGTACATTGGACGGA+AGG | 0.588233 | 5_2:-46280102 | Msa0772130:CDS |
| TGAAGCAAAGAGAGGGCGTA+GGG | 0.595570 | 5_2:-46280124 | Msa0772130:CDS |
| CAAGCTGAGTCAGTACAAGA+AGG | 0.604309 | 5_2:-46280153 | Msa0772130:CDS |
| GATGTATAGGTTGTTTCTGG+AGG | 0.607647 | 5_2:-46279329 | Msa0772130:intron |
| CAAGCTGAGTCAGTACCTGA+AGG | 0.616539 | 5_2:-46280198 | Msa0772130:CDS |
| CGACACTGATGTCATTGAGT+CGG | 0.619037 | 5_2:-46280265 | Msa0772130:CDS |
| ATCATATCGATTTAAATGAG+CGG | 0.624082 | 5_2:-46280344 | Msa0772130:CDS |
| TCATTTAAATCGATATGATG+AGG | 0.628741 | 5_2:+46280348 | None:intergenic |
| GGAAGTCGTGAAGCAAAGAG+AGG | 0.632062 | 5_2:-46280132 | Msa0772130:CDS |
| AGGTCCCTCTGAGAATAGCA+TGG | 0.632380 | 5_2:-46280310 | Msa0772130:CDS |
| GAAGTCGTGAAGCAAAGAGA+GGG | 0.647998 | 5_2:-46280131 | Msa0772130:CDS |
| ATTAGAGTTTAGCATTGCGG+CGG | 0.651248 | 5_2:+46280236 | None:intergenic |
| TGTGTCTGTTGCATTCCTTG+AGG | 0.673315 | 5_2:+46279058 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACAAATATAAATTTTGTTT+TGG | - | chr5_2:46279329-46279348 | Msa0772130:intron | 10.0% |
| !! | TAGAATTGAAAAAAAAAATA+TGG | + | chr5_2:46279463-46279482 | None:intergenic | 10.0% |
| !!! | TTTTTTCAATTCTATATTTT+AGG | - | chr5_2:46279469-46279488 | Msa0772130:intron | 10.0% |
| !!! | TACAAATATAAATTTTGTTT+TGG | - | chr5_2:46279329-46279348 | Msa0772130:intron | 10.0% |
| !! | TAGAATTGAAAAAAAAAATA+TGG | + | chr5_2:46279463-46279482 | None:intergenic | 10.0% |
| !!! | TTTTTTCAATTCTATATTTT+AGG | - | chr5_2:46279469-46279488 | Msa0772130:intron | 10.0% |
| !! | AAAAATATATATAACTTCCA+AGG | + | chr5_2:46279265-46279284 | None:intergenic | 15.0% |
| !!! | TGGAAGTTATATATATTTTT+TGG | - | chr5_2:46279265-46279284 | Msa0772130:CDS | 15.0% |
| !! | AAAAATATATATAACTTCCA+AGG | + | chr5_2:46279265-46279284 | None:intergenic | 15.0% |
| !!! | TGGAAGTTATATATATTTTT+TGG | - | chr5_2:46279265-46279284 | Msa0772130:CDS | 15.0% |
| !! | GTAAATTAGTACATATCAAT+TGG | + | chr5_2:46279677-46279696 | None:intergenic | 20.0% |
| !!! | TTCTATAATTTGTGATGTAT+AGG | - | chr5_2:46279973-46279992 | Msa0772130:intron | 20.0% |
| !! | AGATATTTCAAAAGAATTTG+TGG | - | chr5_2:46280040-46280059 | Msa0772130:intron | 20.0% |
| !! | GTAAATTAGTACATATCAAT+TGG | + | chr5_2:46279677-46279696 | None:intergenic | 20.0% |
| !!! | TTCTATAATTTGTGATGTAT+AGG | - | chr5_2:46279973-46279992 | Msa0772130:intron | 20.0% |
| !! | AGATATTTCAAAAGAATTTG+TGG | - | chr5_2:46280040-46280059 | Msa0772130:intron | 20.0% |
| ! | TCATTTAAATCGATATGATG+AGG | + | chr5_2:46278970-46278989 | None:intergenic | 25.0% |
| !!! | ATCATATCGATTTAAATGAG+CGG | - | chr5_2:46278971-46278990 | Msa0772130:CDS | 25.0% |
| ! | AGATGCAAATTAATCTTTCT+AGG | - | chr5_2:46279806-46279825 | Msa0772130:intron | 25.0% |
| !!! | TTGGTGGATAAAGAATTTTT+GGG | + | chr5_2:46280099-46280118 | None:intergenic | 25.0% |
| !!! | TTTGGTGGATAAAGAATTTT+TGG | + | chr5_2:46280100-46280119 | None:intergenic | 25.0% |
| ! | TCATTTAAATCGATATGATG+AGG | + | chr5_2:46278970-46278989 | None:intergenic | 25.0% |
| !!! | ATCATATCGATTTAAATGAG+CGG | - | chr5_2:46278971-46278990 | Msa0772130:CDS | 25.0% |
| ! | AGATGCAAATTAATCTTTCT+AGG | - | chr5_2:46279806-46279825 | Msa0772130:intron | 25.0% |
| !!! | TTGGTGGATAAAGAATTTTT+GGG | + | chr5_2:46280099-46280118 | None:intergenic | 25.0% |
| !!! | TTTGGTGGATAAAGAATTTT+TGG | + | chr5_2:46280100-46280119 | None:intergenic | 25.0% |
| TTCATTAGAGTTTAGCATTG+CGG | + | chr5_2:46279085-46279104 | None:intergenic | 30.0% | |
| GTAAGTATTCAATCTATCCT+TGG | - | chr5_2:46279245-46279264 | Msa0772130:CDS | 30.0% | |
| ! | CATATCAATTGGTAGTTACA+AGG | + | chr5_2:46279666-46279685 | None:intergenic | 30.0% |
| ! | TTCAAGTGTTTGCATTGTTT+TGG | - | chr5_2:46279867-46279886 | Msa0772130:intron | 30.0% |
| ! | TCAAGTGTTTGCATTGTTTT+GGG | - | chr5_2:46279868-46279887 | Msa0772130:intron | 30.0% |
| ! | TCTCTACATCTTTCACATTT+TGG | + | chr5_2:46280118-46280137 | None:intergenic | 30.0% |
| TTCTCAAGTTTCTCTATATC+CGG | + | chr5_2:46280344-46280363 | None:intergenic | 30.0% | |
| TTCATTAGAGTTTAGCATTG+CGG | + | chr5_2:46279085-46279104 | None:intergenic | 30.0% | |
| GTAAGTATTCAATCTATCCT+TGG | - | chr5_2:46279245-46279264 | Msa0772130:CDS | 30.0% | |
| ! | CATATCAATTGGTAGTTACA+AGG | + | chr5_2:46279666-46279685 | None:intergenic | 30.0% |
| ! | TTCAAGTGTTTGCATTGTTT+TGG | - | chr5_2:46279867-46279886 | Msa0772130:intron | 30.0% |
| ! | TCAAGTGTTTGCATTGTTTT+GGG | - | chr5_2:46279868-46279887 | Msa0772130:intron | 30.0% |
| ! | TCTCTACATCTTTCACATTT+TGG | + | chr5_2:46280118-46280137 | None:intergenic | 30.0% |
| TTCTCAAGTTTCTCTATATC+CGG | + | chr5_2:46280344-46280363 | None:intergenic | 30.0% | |
| TTAGCTTCATTACTTCCTTC+AGG | + | chr5_2:46279135-46279154 | None:intergenic | 35.0% | |
| GGAAGTAATGAAGCTAACTT+AGG | - | chr5_2:46279138-46279157 | Msa0772130:CDS | 35.0% | |
| AATGTTAACTAGTGTCCCAA+GGG | + | chr5_2:46279438-46279457 | None:intergenic | 35.0% | |
| ! | TGTGATGTATAGGTTGTTTC+TGG | - | chr5_2:46279983-46280002 | Msa0772130:intron | 35.0% |
| !! | ATGTATAGGTTGTTTCTGGA+GGG | - | chr5_2:46279987-46280006 | Msa0772130:intron | 35.0% |
| GGGCTAGAAAAATATGGTAA+GGG | - | chr5_2:46280008-46280027 | Msa0772130:intron | 35.0% | |
| AAAAATATGGTAAGGGACGT+TGG | - | chr5_2:46280015-46280034 | Msa0772130:intron | 35.0% | |
| !! | GGATAAAGAATTTTTGGGCA+TGG | + | chr5_2:46280094-46280113 | None:intergenic | 35.0% |
| ! | CTACATCTTTCACATTTTGG+TGG | + | chr5_2:46280115-46280134 | None:intergenic | 35.0% |
| ATGTGAAAGATGTAGAGAAG+AGG | - | chr5_2:46280120-46280139 | Msa0772130:CDS | 35.0% | |
| GACACAAGCTTAAACAAGAA+TGG | - | chr5_2:46280164-46280183 | Msa0772130:CDS | 35.0% | |
| TTAGCTTCATTACTTCCTTC+AGG | + | chr5_2:46279135-46279154 | None:intergenic | 35.0% | |
| GGAAGTAATGAAGCTAACTT+AGG | - | chr5_2:46279138-46279157 | Msa0772130:CDS | 35.0% | |
| AATGTTAACTAGTGTCCCAA+GGG | + | chr5_2:46279438-46279457 | None:intergenic | 35.0% | |
| ! | TGTGATGTATAGGTTGTTTC+TGG | - | chr5_2:46279983-46280002 | Msa0772130:intron | 35.0% |
| !! | ATGTATAGGTTGTTTCTGGA+GGG | - | chr5_2:46279987-46280006 | Msa0772130:intron | 35.0% |
| GGGCTAGAAAAATATGGTAA+GGG | - | chr5_2:46280008-46280027 | Msa0772130:intron | 35.0% | |
| AAAAATATGGTAAGGGACGT+TGG | - | chr5_2:46280015-46280034 | Msa0772130:intron | 35.0% | |
| !! | GGATAAAGAATTTTTGGGCA+TGG | + | chr5_2:46280094-46280113 | None:intergenic | 35.0% |
| ! | CTACATCTTTCACATTTTGG+TGG | + | chr5_2:46280115-46280134 | None:intergenic | 35.0% |
| ATGTGAAAGATGTAGAGAAG+AGG | - | chr5_2:46280120-46280139 | Msa0772130:CDS | 35.0% | |
| GACACAAGCTTAAACAAGAA+TGG | - | chr5_2:46280164-46280183 | Msa0772130:CDS | 35.0% | |
| ! | AATGAGCGGACTTCAATTCA+AGG | - | chr5_2:46278985-46279004 | Msa0772130:CDS | 40.0% |
| TGTTCCATGCTATTCTCAGA+GGG | + | chr5_2:46279012-46279031 | None:intergenic | 40.0% | |
| TTGTTCCATGCTATTCTCAG+AGG | + | chr5_2:46279013-46279032 | None:intergenic | 40.0% | |
| ATTAGAGTTTAGCATTGCGG+CGG | + | chr5_2:46279082-46279101 | None:intergenic | 40.0% | |
| TTCCTTAACCATTGCCCTAA+GGG | + | chr5_2:46279307-46279326 | None:intergenic | 40.0% | |
| ATTCCTTAACCATTGCCCTA+AGG | + | chr5_2:46279308-46279327 | None:intergenic | 40.0% | |
| AATGCTTAACCAATGCCCTT+GGG | - | chr5_2:46279420-46279439 | Msa0772130:intron | 40.0% | |
| GAATGTTAACTAGTGTCCCA+AGG | + | chr5_2:46279439-46279458 | None:intergenic | 40.0% | |
| AGTGACTAGACACTCAACTT+TGG | - | chr5_2:46279597-46279616 | Msa0772130:intron | 40.0% | |
| CAAGGATGTTGATCTACATG+CGG | + | chr5_2:46279648-46279667 | None:intergenic | 40.0% | |
| !! | GATGTATAGGTTGTTTCTGG+AGG | - | chr5_2:46279986-46280005 | Msa0772130:intron | 40.0% |
| !! | TGTATAGGTTGTTTCTGGAG+GGG | - | chr5_2:46279988-46280007 | Msa0772130:intron | 40.0% |
| GGGGCTAGAAAAATATGGTA+AGG | - | chr5_2:46280007-46280026 | Msa0772130:intron | 40.0% | |
| GCATGGCTAGCAATTTGAAT+TGG | + | chr5_2:46280077-46280096 | None:intergenic | 40.0% | |
| ! | AGTCTCATTTTGTTGCTCGA+CGG | + | chr5_2:46280234-46280253 | None:intergenic | 40.0% |
| TTGTGCTTGCTTTGTCCAAT+CGG | - | chr5_2:46280308-46280327 | Msa0772130:CDS | 40.0% | |
| ! | TCCAATCGGTTCTACAATTC+CGG | - | chr5_2:46280322-46280341 | Msa0772130:CDS | 40.0% |
| ! | AATGAGCGGACTTCAATTCA+AGG | - | chr5_2:46278985-46279004 | Msa0772130:CDS | 40.0% |
| TGTTCCATGCTATTCTCAGA+GGG | + | chr5_2:46279012-46279031 | None:intergenic | 40.0% | |
| TTGTTCCATGCTATTCTCAG+AGG | + | chr5_2:46279013-46279032 | None:intergenic | 40.0% | |
| ATTAGAGTTTAGCATTGCGG+CGG | + | chr5_2:46279082-46279101 | None:intergenic | 40.0% | |
| TTCCTTAACCATTGCCCTAA+GGG | + | chr5_2:46279307-46279326 | None:intergenic | 40.0% | |
| ATTCCTTAACCATTGCCCTA+AGG | + | chr5_2:46279308-46279327 | None:intergenic | 40.0% | |
| AATGCTTAACCAATGCCCTT+GGG | - | chr5_2:46279420-46279439 | Msa0772130:intron | 40.0% | |
| GAATGTTAACTAGTGTCCCA+AGG | + | chr5_2:46279439-46279458 | None:intergenic | 40.0% | |
| AGTGACTAGACACTCAACTT+TGG | - | chr5_2:46279597-46279616 | Msa0772130:intron | 40.0% | |
| CAAGGATGTTGATCTACATG+CGG | + | chr5_2:46279648-46279667 | None:intergenic | 40.0% | |
| !! | GATGTATAGGTTGTTTCTGG+AGG | - | chr5_2:46279986-46280005 | Msa0772130:intron | 40.0% |
| !! | TGTATAGGTTGTTTCTGGAG+GGG | - | chr5_2:46279988-46280007 | Msa0772130:intron | 40.0% |
| GGGGCTAGAAAAATATGGTA+AGG | - | chr5_2:46280007-46280026 | Msa0772130:intron | 40.0% | |
| GCATGGCTAGCAATTTGAAT+TGG | + | chr5_2:46280077-46280096 | None:intergenic | 40.0% | |
| ! | AGTCTCATTTTGTTGCTCGA+CGG | + | chr5_2:46280234-46280253 | None:intergenic | 40.0% |
| TTGTGCTTGCTTTGTCCAAT+CGG | - | chr5_2:46280308-46280327 | Msa0772130:CDS | 40.0% | |
| ! | TCCAATCGGTTCTACAATTC+CGG | - | chr5_2:46280322-46280341 | Msa0772130:CDS | 40.0% |
| CGACACTGATGTCATTGAGT+CGG | - | chr5_2:46279050-46279069 | Msa0772130:CDS | 45.0% | |
| CAAGCTGAGTCAGTACAAGA+AGG | - | chr5_2:46279162-46279181 | Msa0772130:CDS | 45.0% | |
| GAAGTCGTGAAGCAAAGAGA+GGG | - | chr5_2:46279184-46279203 | Msa0772130:CDS | 45.0% | |
| ! | TAGGGAAAGGGTACATTGGA+CGG | - | chr5_2:46279209-46279228 | Msa0772130:CDS | 45.0% |
| TCTTGCCAACAAATGCCCTT+AGG | - | chr5_2:46279289-46279308 | Msa0772130:CDS | 45.0% | |
| CTTGCCAACAAATGCCCTTA+GGG | - | chr5_2:46279290-46279309 | Msa0772130:CDS | 45.0% | |
| !! | ATTGCCCTAAGGGCATTTGT+TGG | + | chr5_2:46279297-46279316 | None:intergenic | 45.0% |
| AACAAATGCCCTTAGGGCAA+TGG | - | chr5_2:46279296-46279315 | Msa0772130:CDS | 45.0% | |
| GAATGCTTAACCAATGCCCT+TGG | - | chr5_2:46279419-46279438 | Msa0772130:intron | 45.0% | |
| CTGGAGGGGCTAGAAAAATA+TGG | - | chr5_2:46280002-46280021 | Msa0772130:intron | 45.0% | |
| CGGAAGGAATACCATCTTGT+TGG | + | chr5_2:46280214-46280233 | None:intergenic | 45.0% | |
| ! | TCATTTTGTTGCTCGACGGA+AGG | + | chr5_2:46280230-46280249 | None:intergenic | 45.0% |
| CAAAATGAGACTCCTCCTCA+AGG | - | chr5_2:46280242-46280261 | Msa0772130:CDS | 45.0% | |
| TGTGTCTGTTGCATTCCTTG+AGG | + | chr5_2:46280260-46280279 | None:intergenic | 45.0% | |
| GGACAAAGCAAGCACAACAT+TGG | + | chr5_2:46280305-46280324 | None:intergenic | 45.0% | |
| TCCGGAATTGTAGAACCGAT+TGG | + | chr5_2:46280326-46280345 | None:intergenic | 45.0% | |
| TGAGAAGATGCGCGACTTAT+TGG | - | chr5_2:46280358-46280377 | Msa0772130:CDS | 45.0% | |
| CGACACTGATGTCATTGAGT+CGG | - | chr5_2:46279050-46279069 | Msa0772130:CDS | 45.0% | |
| CAAGCTGAGTCAGTACAAGA+AGG | - | chr5_2:46279162-46279181 | Msa0772130:CDS | 45.0% | |
| GAAGTCGTGAAGCAAAGAGA+GGG | - | chr5_2:46279184-46279203 | Msa0772130:CDS | 45.0% | |
| ! | TAGGGAAAGGGTACATTGGA+CGG | - | chr5_2:46279209-46279228 | Msa0772130:CDS | 45.0% |
| TCTTGCCAACAAATGCCCTT+AGG | - | chr5_2:46279289-46279308 | Msa0772130:CDS | 45.0% | |
| CTTGCCAACAAATGCCCTTA+GGG | - | chr5_2:46279290-46279309 | Msa0772130:CDS | 45.0% | |
| !! | ATTGCCCTAAGGGCATTTGT+TGG | + | chr5_2:46279297-46279316 | None:intergenic | 45.0% |
| AACAAATGCCCTTAGGGCAA+TGG | - | chr5_2:46279296-46279315 | Msa0772130:CDS | 45.0% | |
| GAATGCTTAACCAATGCCCT+TGG | - | chr5_2:46279419-46279438 | Msa0772130:intron | 45.0% | |
| CTGGAGGGGCTAGAAAAATA+TGG | - | chr5_2:46280002-46280021 | Msa0772130:intron | 45.0% | |
| CGGAAGGAATACCATCTTGT+TGG | + | chr5_2:46280214-46280233 | None:intergenic | 45.0% | |
| ! | TCATTTTGTTGCTCGACGGA+AGG | + | chr5_2:46280230-46280249 | None:intergenic | 45.0% |
| CAAAATGAGACTCCTCCTCA+AGG | - | chr5_2:46280242-46280261 | Msa0772130:CDS | 45.0% | |
| TGTGTCTGTTGCATTCCTTG+AGG | + | chr5_2:46280260-46280279 | None:intergenic | 45.0% | |
| GGACAAAGCAAGCACAACAT+TGG | + | chr5_2:46280305-46280324 | None:intergenic | 45.0% | |
| TCCGGAATTGTAGAACCGAT+TGG | + | chr5_2:46280326-46280345 | None:intergenic | 45.0% | |
| TGAGAAGATGCGCGACTTAT+TGG | - | chr5_2:46280358-46280377 | Msa0772130:CDS | 45.0% | |
| ! | AGGTCCCTCTGAGAATAGCA+TGG | - | chr5_2:46279005-46279024 | Msa0772130:CDS | 50.0% |
| CAAGCTGAGTCAGTACCTGA+AGG | - | chr5_2:46279117-46279136 | Msa0772130:CDS | 50.0% | |
| GGAAGTCGTGAAGCAAAGAG+AGG | - | chr5_2:46279183-46279202 | Msa0772130:CDS | 50.0% | |
| ! | TGAAGCAAAGAGAGGGCGTA+GGG | - | chr5_2:46279191-46279210 | Msa0772130:CDS | 50.0% |
| ! | AAAGAGAGGGCGTAGGGAAA+GGG | - | chr5_2:46279197-46279216 | Msa0772130:CDS | 50.0% |
| ! | GAAAGGGTACATTGGACGGA+AGG | - | chr5_2:46279213-46279232 | Msa0772130:CDS | 50.0% |
| TGCCCTTAGGGCAATGGTTA+AGG | - | chr5_2:46279302-46279321 | Msa0772130:CDS | 50.0% | |
| ! | AACTAGTGTCCCAAGGGCAT+TGG | + | chr5_2:46279432-46279451 | None:intergenic | 50.0% |
| CTCGCTGTTGACCAACAAGA+TGG | - | chr5_2:46280200-46280219 | Msa0772130:CDS | 50.0% | |
| GTCTGTTGCATTCCTTGAGG+AGG | + | chr5_2:46280257-46280276 | None:intergenic | 50.0% | |
| ! | AGGTCCCTCTGAGAATAGCA+TGG | - | chr5_2:46279005-46279024 | Msa0772130:CDS | 50.0% |
| CAAGCTGAGTCAGTACCTGA+AGG | - | chr5_2:46279117-46279136 | Msa0772130:CDS | 50.0% | |
| GGAAGTCGTGAAGCAAAGAG+AGG | - | chr5_2:46279183-46279202 | Msa0772130:CDS | 50.0% | |
| ! | TGAAGCAAAGAGAGGGCGTA+GGG | - | chr5_2:46279191-46279210 | Msa0772130:CDS | 50.0% |
| ! | AAAGAGAGGGCGTAGGGAAA+GGG | - | chr5_2:46279197-46279216 | Msa0772130:CDS | 50.0% |
| ! | GAAAGGGTACATTGGACGGA+AGG | - | chr5_2:46279213-46279232 | Msa0772130:CDS | 50.0% |
| TGCCCTTAGGGCAATGGTTA+AGG | - | chr5_2:46279302-46279321 | Msa0772130:CDS | 50.0% | |
| ! | AACTAGTGTCCCAAGGGCAT+TGG | + | chr5_2:46279432-46279451 | None:intergenic | 50.0% |
| CTCGCTGTTGACCAACAAGA+TGG | - | chr5_2:46280200-46280219 | Msa0772130:CDS | 50.0% | |
| GTCTGTTGCATTCCTTGAGG+AGG | + | chr5_2:46280257-46280276 | None:intergenic | 50.0% | |
| ! | GTGAAGCAAAGAGAGGGCGT+AGG | - | chr5_2:46279190-46279209 | Msa0772130:CDS | 55.0% |
| ! | CAAAGAGAGGGCGTAGGGAA+AGG | - | chr5_2:46279196-46279215 | Msa0772130:CDS | 55.0% |
| ! | GGCGTAGGGAAAGGGTACAT+TGG | - | chr5_2:46279205-46279224 | Msa0772130:CDS | 55.0% |
| ! | GTGAAGCAAAGAGAGGGCGT+AGG | - | chr5_2:46279190-46279209 | Msa0772130:CDS | 55.0% |
| ! | CAAAGAGAGGGCGTAGGGAA+AGG | - | chr5_2:46279196-46279215 | Msa0772130:CDS | 55.0% |
| ! | GGCGTAGGGAAAGGGTACAT+TGG | - | chr5_2:46279205-46279224 | Msa0772130:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 46278937 | 46280400 | 46278937 | ID=Msa0772130;Name=Msa0772130 |
| chr5_2 | mRNA | 46278937 | 46280400 | 46278937 | ID=Msa0772130-mRNA-1;Parent=Msa0772130;Name=Msa0772130-mRNA-1;_AED=0.01;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|237 |
| chr5_2 | exon | 46280093 | 46280400 | 46280093 | ID=Msa0772130-mRNA-1:exon:13835;Parent=Msa0772130-mRNA-1 |
| chr5_2 | exon | 46278937 | 46279342 | 46278937 | ID=Msa0772130-mRNA-1:exon:13834;Parent=Msa0772130-mRNA-1 |
| chr5_2 | CDS | 46280093 | 46280400 | 46280093 | ID=Msa0772130-mRNA-1:cds;Parent=Msa0772130-mRNA-1 |
| chr5_2 | CDS | 46278937 | 46279342 | 46278937 | ID=Msa0772130-mRNA-1:cds;Parent=Msa0772130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
