Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772190 | sp|Q9SY66|FRS11_ARATH | 47.386 | 306 | 151 | 3 | 20 | 321 | 28 | 327 | 5.81e-93 | 293 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772190 | A0A2K3N8Z5 | 76.012 | 321 | 73 | 2 | 7 | 323 | 21 | 341 | 2.47e-170 | 498 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0772190 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772190 | MtrunA17_Chr5g0431001 | 73.885 | 314 | 79 | 1 | 10 | 320 | 31 | 344 | 4.01e-168 | 477 |
| Msa0772190 | MtrunA17_Chr1g0198761 | 70.440 | 318 | 90 | 2 | 10 | 323 | 16 | 333 | 3.95e-156 | 456 |
| Msa0772190 | MtrunA17_Chr2g0276841 | 46.959 | 296 | 147 | 3 | 32 | 323 | 62 | 351 | 3.80e-95 | 296 |
| Msa0772190 | MtrunA17_Chr2g0294841 | 44.695 | 311 | 159 | 4 | 20 | 323 | 25 | 329 | 4.04e-84 | 269 |
| Msa0772190 | MtrunA17_Chr2g0290391 | 44.631 | 298 | 145 | 3 | 39 | 323 | 50 | 340 | 3.89e-81 | 260 |
| Msa0772190 | MtrunA17_Chr3g0081281 | 86.022 | 93 | 13 | 0 | 185 | 277 | 1 | 93 | 1.94e-50 | 162 |
| Msa0772190 | MtrunA17_Chr2g0287651 | 31.034 | 290 | 180 | 8 | 36 | 319 | 74 | 349 | 3.21e-36 | 139 |
| Msa0772190 | MtrunA17_Chr5g0448761 | 29.930 | 284 | 186 | 5 | 40 | 317 | 60 | 336 | 3.78e-34 | 132 |
| Msa0772190 | MtrunA17_Chr1g0203051 | 28.309 | 272 | 184 | 5 | 52 | 321 | 91 | 353 | 2.05e-33 | 130 |
| Msa0772190 | MtrunA17_Chr8g0363841 | 29.474 | 285 | 190 | 5 | 41 | 323 | 18 | 293 | 3.25e-33 | 129 |
| Msa0772190 | MtrunA17_Chr1g0202341 | 29.043 | 303 | 195 | 6 | 23 | 323 | 42 | 326 | 5.80e-32 | 126 |
| Msa0772190 | MtrunA17_Chr6g0458391 | 29.831 | 295 | 181 | 6 | 27 | 321 | 213 | 481 | 6.58e-32 | 126 |
| Msa0772190 | MtrunA17_Chr6g0458391 | 32.000 | 125 | 77 | 2 | 39 | 163 | 90 | 206 | 7.82e-11 | 63.2 |
| Msa0772190 | MtrunA17_Chr5g0441581 | 29.825 | 285 | 177 | 8 | 38 | 320 | 30 | 293 | 2.67e-31 | 124 |
| Msa0772190 | MtrunA17_Chr2g0296781 | 29.286 | 280 | 182 | 7 | 46 | 323 | 3 | 268 | 1.78e-29 | 119 |
| Msa0772190 | MtrunA17_Chr5g0440451 | 26.159 | 302 | 184 | 8 | 40 | 323 | 43 | 323 | 2.61e-29 | 118 |
| Msa0772190 | MtrunA17_Chr2g0287061 | 30.035 | 283 | 153 | 8 | 40 | 321 | 183 | 421 | 8.00e-28 | 114 |
| Msa0772190 | MtrunA17_Chr1g0207551 | 29.310 | 290 | 183 | 8 | 40 | 323 | 34 | 307 | 4.05e-26 | 109 |
| Msa0772190 | MtrunA17_Chr1g0203721 | 26.990 | 289 | 186 | 7 | 43 | 321 | 66 | 339 | 3.31e-25 | 106 |
| Msa0772190 | MtrunA17_Chr3g0080351 | 26.000 | 300 | 172 | 9 | 40 | 323 | 76 | 341 | 3.57e-25 | 106 |
| Msa0772190 | MtrunA17_Chr3g0082121 | 27.000 | 300 | 194 | 8 | 29 | 323 | 32 | 311 | 2.60e-24 | 103 |
| Msa0772190 | MtrunA17_Chr6g0477261 | 36.943 | 157 | 97 | 2 | 168 | 323 | 2 | 157 | 2.08e-23 | 100 |
| Msa0772190 | MtrunA17_Chr2g0324011 | 24.667 | 300 | 212 | 6 | 32 | 328 | 2 | 290 | 4.28e-23 | 100 |
| Msa0772190 | MtrunA17_Chr7g0258861 | 23.841 | 302 | 215 | 6 | 32 | 328 | 2 | 293 | 5.53e-23 | 97.1 |
| Msa0772190 | MtrunA17_Chr1g0196541 | 26.690 | 281 | 176 | 8 | 46 | 317 | 3 | 262 | 1.24e-22 | 99.0 |
| Msa0772190 | MtrunA17_Chr2g0329031 | 26.855 | 283 | 176 | 10 | 46 | 321 | 20 | 278 | 1.74e-22 | 98.6 |
| Msa0772190 | MtrunA17_Chr2g0291591 | 27.303 | 304 | 181 | 9 | 34 | 323 | 58 | 335 | 2.09e-20 | 92.0 |
| Msa0772190 | MtrunA17_Chr3g0118611 | 33.103 | 145 | 94 | 1 | 179 | 323 | 79 | 220 | 1.13e-19 | 90.1 |
| Msa0772190 | MtrunA17_Chr2g0291581 | 22.997 | 287 | 191 | 8 | 39 | 321 | 70 | 330 | 1.93e-17 | 83.2 |
| Msa0772190 | MtrunA17_Chr5g0448511 | 36.000 | 100 | 64 | 0 | 224 | 323 | 15 | 114 | 7.65e-15 | 75.5 |
| Msa0772190 | MtrunA17_Chr1g0164591 | 37.500 | 88 | 55 | 0 | 236 | 323 | 104 | 191 | 9.10e-15 | 73.9 |
| Msa0772190 | MtrunA17_Chr1g0171741 | 31.356 | 118 | 69 | 3 | 46 | 160 | 139 | 247 | 1.95e-13 | 69.3 |
| Msa0772190 | MtrunA17_Chr2g0329421 | 30.435 | 115 | 70 | 3 | 34 | 148 | 23 | 127 | 3.67e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772190 | AT1G10240.2 | 47.386 | 306 | 151 | 3 | 20 | 321 | 28 | 327 | 5.91e-94 | 293 |
| Msa0772190 | AT1G10240.1 | 47.386 | 306 | 151 | 3 | 20 | 321 | 28 | 327 | 5.91e-94 | 293 |
| Msa0772190 | AT5G28530.3 | 46.605 | 324 | 151 | 5 | 11 | 321 | 28 | 342 | 3.44e-88 | 278 |
| Msa0772190 | AT5G28530.2 | 46.605 | 324 | 151 | 5 | 11 | 321 | 28 | 342 | 3.44e-88 | 278 |
| Msa0772190 | AT5G28530.1 | 46.605 | 324 | 151 | 5 | 11 | 321 | 28 | 342 | 3.64e-88 | 278 |
| Msa0772190 | AT5G28530.4 | 41.288 | 264 | 135 | 5 | 11 | 263 | 28 | 282 | 7.65e-53 | 184 |
| Msa0772190 | AT5G28530.5 | 41.288 | 264 | 135 | 5 | 11 | 263 | 28 | 282 | 8.35e-53 | 184 |
| Msa0772190 | AT4G38180.1 | 30.000 | 280 | 187 | 3 | 40 | 317 | 73 | 345 | 1.21e-36 | 140 |
| Msa0772190 | AT4G15090.1 | 28.834 | 326 | 187 | 11 | 23 | 323 | 22 | 327 | 7.19e-28 | 114 |
| Msa0772190 | AT4G15090.5 | 28.834 | 326 | 187 | 11 | 23 | 323 | 22 | 327 | 7.19e-28 | 114 |
| Msa0772190 | AT4G15090.3 | 28.834 | 326 | 187 | 11 | 23 | 323 | 22 | 327 | 7.19e-28 | 114 |
| Msa0772190 | AT4G15090.2 | 28.834 | 326 | 187 | 11 | 23 | 323 | 22 | 327 | 7.19e-28 | 114 |
| Msa0772190 | AT4G15090.4 | 28.834 | 326 | 187 | 11 | 23 | 323 | 22 | 327 | 7.19e-28 | 114 |
| Msa0772190 | AT2G27110.2 | 25.352 | 284 | 178 | 4 | 40 | 323 | 49 | 298 | 6.59e-23 | 100 |
| Msa0772190 | AT2G27110.1 | 25.352 | 284 | 178 | 4 | 40 | 323 | 49 | 298 | 6.59e-23 | 100 |
| Msa0772190 | AT3G22170.2 | 24.415 | 299 | 179 | 8 | 40 | 323 | 70 | 336 | 6.74e-23 | 100 |
| Msa0772190 | AT3G22170.1 | 24.415 | 299 | 179 | 8 | 40 | 323 | 70 | 336 | 6.74e-23 | 100 |
| Msa0772190 | AT1G76320.2 | 26.573 | 286 | 178 | 9 | 46 | 323 | 3 | 264 | 1.41e-22 | 99.0 |
| Msa0772190 | AT1G76320.1 | 26.573 | 286 | 178 | 9 | 46 | 323 | 3 | 264 | 1.66e-22 | 99.0 |
| Msa0772190 | AT1G76320.4 | 26.573 | 286 | 178 | 9 | 46 | 323 | 3 | 264 | 1.66e-22 | 99.0 |
| Msa0772190 | AT1G76320.3 | 26.573 | 286 | 178 | 9 | 46 | 323 | 3 | 264 | 1.85e-22 | 98.6 |
| Msa0772190 | AT3G06250.2 | 25.086 | 291 | 158 | 6 | 40 | 323 | 190 | 427 | 7.28e-21 | 94.0 |
| Msa0772190 | AT3G06250.1 | 25.086 | 291 | 158 | 6 | 40 | 323 | 190 | 427 | 7.28e-21 | 94.0 |
| Msa0772190 | AT3G06250.3 | 25.086 | 291 | 158 | 6 | 40 | 323 | 190 | 427 | 7.28e-21 | 94.0 |
| Msa0772190 | AT2G27110.3 | 36.893 | 103 | 65 | 0 | 221 | 323 | 51 | 153 | 9.63e-18 | 84.7 |
| Msa0772190 | AT1G52520.1 | 23.529 | 289 | 194 | 7 | 39 | 323 | 84 | 349 | 7.71e-17 | 82.0 |
| Msa0772190 | AT1G80010.1 | 23.490 | 298 | 195 | 7 | 40 | 323 | 95 | 373 | 9.34e-16 | 78.6 |
| Msa0772190 | AT3G59470.3 | 35.455 | 110 | 63 | 3 | 40 | 149 | 70 | 171 | 3.95e-14 | 71.6 |
| Msa0772190 | AT3G59470.1 | 35.455 | 110 | 63 | 3 | 40 | 149 | 70 | 171 | 3.95e-14 | 71.6 |
| Msa0772190 | AT3G59470.2 | 35.455 | 110 | 63 | 3 | 40 | 149 | 82 | 183 | 4.98e-14 | 71.6 |
| Msa0772190 | AT4G38170.1 | 40.278 | 72 | 42 | 1 | 253 | 323 | 45 | 116 | 1.72e-11 | 65.5 |
Find 42 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAGGTAACTTACCATTTC+TGG | 0.139830 | 5_2:+46401724 | Msa0772190:CDS |
| TTCATTCAGATGGGCTTTAA+AGG | 0.197395 | 5_2:+46402078 | Msa0772190:CDS |
| ACAAACTAGAGCATATTATT+TGG | 0.199763 | 5_2:+46401885 | Msa0772190:CDS |
| CTAAAGGCTTCGAAGGAAAA+TGG | 0.246386 | 5_2:+46401522 | Msa0772190:CDS |
| GAGCATATTATTTGGGCATT+TGG | 0.276151 | 5_2:+46401893 | Msa0772190:CDS |
| ACATATGAAGATGATGAATA+TGG | 0.290862 | 5_2:+46401164 | Msa0772190:CDS |
| ATTCGAGCATATGAATCTTT+TGG | 0.301566 | 5_2:+46401923 | Msa0772190:CDS |
| CTAATATCCTTCTCCAGAAA+TGG | 0.365717 | 5_2:-46401737 | None:intergenic |
| TGCCACTTGGAATGTGGATT+GGG | 0.366378 | 5_2:+46401993 | Msa0772190:CDS |
| CAAACTAGAGCATATTATTT+GGG | 0.370107 | 5_2:+46401886 | Msa0772190:CDS |
| ATGTAAAAGTCTGAAAGATA+TGG | 0.416400 | 5_2:+46401823 | Msa0772190:CDS |
| AAATACATTGTAAAATTCAT+AGG | 0.433492 | 5_2:-46401294 | None:intergenic |
| GCAAAGTTGTTGGTTTCTAA+AGG | 0.440350 | 5_2:+46401506 | Msa0772190:CDS |
| GAACTAGTACTGTTGATGAA+TGG | 0.456158 | 5_2:+46401231 | Msa0772190:CDS |
| TAAAGGCTTCGAAGGAAAAT+GGG | 0.460480 | 5_2:+46401523 | Msa0772190:CDS |
| CCATGAGATATTAGATGATA+AGG | 0.460950 | 5_2:+46401574 | Msa0772190:CDS |
| AGAAGAAATCTTCATTCAGA+TGG | 0.469575 | 5_2:+46402068 | Msa0772190:CDS |
| CCAAGTTGAGGTTCTTGATG+TGG | 0.475634 | 5_2:-46401209 | None:intergenic |
| TTAGAGAAATCAATAGATAC+AGG | 0.477570 | 5_2:+46401707 | Msa0772190:CDS |
| AACTAGTACTGTTGATGAAT+GGG | 0.484545 | 5_2:+46401232 | Msa0772190:CDS |
| TAGTTGTAGCGCAAAGTTGT+TGG | 0.498154 | 5_2:+46401496 | Msa0772190:CDS |
| GAGTATGAAGATAATCCATC+AGG | 0.501247 | 5_2:+46401374 | Msa0772190:CDS |
| CATCTAATATCTCATGGTTG+TGG | 0.505648 | 5_2:-46401568 | None:intergenic |
| ATGCCACTTGGAATGTGGAT+TGG | 0.511770 | 5_2:+46401992 | Msa0772190:CDS |
| TTGGTTTCTAAAGGCTTCGA+AGG | 0.516632 | 5_2:+46401515 | Msa0772190:CDS |
| GAATTTGTTTGTCATCGAGC+TGG | 0.517742 | 5_2:+46401410 | Msa0772190:CDS |
| TGGATTGGGGTTGATAATCA+TGG | 0.518964 | 5_2:+46402007 | Msa0772190:CDS |
| AAAGGAAACAGAAATCTTCA+AGG | 0.519257 | 5_2:+46401471 | Msa0772190:CDS |
| ATATTATTGTTATCAAAAGC+AGG | 0.524397 | 5_2:+46401650 | Msa0772190:CDS |
| CCACATCAAGAACCTCAACT+TGG | 0.525980 | 5_2:+46401209 | Msa0772190:CDS |
| TCTCTGTTATAAACTCCTGA+TGG | 0.530845 | 5_2:-46401389 | None:intergenic |
| TAACTTACCATTTCTGGAGA+AGG | 0.534997 | 5_2:+46401730 | Msa0772190:CDS |
| TTCCAAGTGGCATATCATAA+CGG | 0.535191 | 5_2:-46401982 | None:intergenic |
| CCTTATCATCTAATATCTCA+TGG | 0.538430 | 5_2:-46401574 | None:intergenic |
| AACCGTTATGATATGCCACT+TGG | 0.555362 | 5_2:+46401980 | Msa0772190:CDS |
| GAAGAAATCTTCATTCAGAT+GGG | 0.559436 | 5_2:+46402069 | Msa0772190:CDS |
| ATGATATGCCACTTGGAATG+TGG | 0.611489 | 5_2:+46401987 | Msa0772190:CDS |
| TGAGATATTAGATGATAAGG+AGG | 0.642289 | 5_2:+46401577 | Msa0772190:CDS |
| GCCACTTGGAATGTGGATTG+GGG | 0.646236 | 5_2:+46401994 | Msa0772190:CDS |
| ACCCCAATCCACATTCCAAG+TGG | 0.654914 | 5_2:-46401995 | None:intergenic |
| ACAGTACTAGTTCCAAGTTG+AGG | 0.660670 | 5_2:-46401221 | None:intergenic |
| AGGCTTCGAAGGAAAATGGG+TGG | 0.697434 | 5_2:+46401526 | Msa0772190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTATACAAGAAAATA+AGG | + | chr5_2:46400939-46400958 | Msa0772190:intron | 10.0% |
| !!! | TTTTTTTATACAAGAAAATA+AGG | + | chr5_2:46400939-46400958 | Msa0772190:intron | 10.0% |
| !!! | AAAATTGTTATTAGTTTGAT+GGG | + | chr5_2:46400859-46400878 | Msa0772190:intron | 15.0% |
| !!! | AAAATAAGGTATATGTATTT+TGG | + | chr5_2:46400953-46400972 | Msa0772190:intron | 15.0% |
| !! | AAATACATTGTAAAATTCAT+AGG | - | chr5_2:46401297-46401316 | None:intergenic | 15.0% |
| !!! | AAAATTGTTATTAGTTTGAT+GGG | + | chr5_2:46400859-46400878 | Msa0772190:intron | 15.0% |
| !!! | AAAATAAGGTATATGTATTT+TGG | + | chr5_2:46400953-46400972 | Msa0772190:intron | 15.0% |
| !! | AAATACATTGTAAAATTCAT+AGG | - | chr5_2:46401297-46401316 | None:intergenic | 15.0% |
| !!! | CAAAATTGTTATTAGTTTGA+TGG | + | chr5_2:46400858-46400877 | Msa0772190:intron | 20.0% |
| !!! | AAATTGTTATTAGTTTGATG+GGG | + | chr5_2:46400860-46400879 | Msa0772190:intron | 20.0% |
| !!! | AAGTACGTTTTTGTTTTTTA+GGG | - | chr5_2:46401003-46401022 | None:intergenic | 20.0% |
| !!! | AAAGTACGTTTTTGTTTTTT+AGG | - | chr5_2:46401004-46401023 | None:intergenic | 20.0% |
| !! | AATGATTCAGATTTGAATTA+AGG | + | chr5_2:46401070-46401089 | Msa0772190:intron | 20.0% |
| !! | TTAAAAATTTGTCCTTCAAA+AGG | - | chr5_2:46401260-46401279 | None:intergenic | 20.0% |
| !! | ATATTATTGTTATCAAAAGC+AGG | + | chr5_2:46401650-46401669 | Msa0772190:CDS | 20.0% |
| !!! | CAAAATTGTTATTAGTTTGA+TGG | + | chr5_2:46400858-46400877 | Msa0772190:intron | 20.0% |
| !!! | AAATTGTTATTAGTTTGATG+GGG | + | chr5_2:46400860-46400879 | Msa0772190:intron | 20.0% |
| !!! | AAGTACGTTTTTGTTTTTTA+GGG | - | chr5_2:46401003-46401022 | None:intergenic | 20.0% |
| !!! | AAAGTACGTTTTTGTTTTTT+AGG | - | chr5_2:46401004-46401023 | None:intergenic | 20.0% |
| !! | AATGATTCAGATTTGAATTA+AGG | + | chr5_2:46401070-46401089 | Msa0772190:intron | 20.0% |
| !! | TTAAAAATTTGTCCTTCAAA+AGG | - | chr5_2:46401260-46401279 | None:intergenic | 20.0% |
| !! | ATATTATTGTTATCAAAAGC+AGG | + | chr5_2:46401650-46401669 | Msa0772190:CDS | 20.0% |
| !!! | CTTTCGTTTTTCAAATGATA+GGG | + | chr5_2:46400885-46400904 | Msa0772190:intron | 25.0% |
| ! | TAAGAAATAATGCTAGTGAT+TGG | + | chr5_2:46401112-46401131 | Msa0772190:intron | 25.0% |
| ! | ACATATGAAGATGATGAATA+TGG | + | chr5_2:46401164-46401183 | Msa0772190:CDS | 25.0% |
| ! | AATGTATTTGCACGAAAAAA+TGG | + | chr5_2:46401308-46401327 | Msa0772190:CDS | 25.0% |
| !!! | GAAAAAATGGATTTTCGATT+AGG | + | chr5_2:46401321-46401340 | Msa0772190:CDS | 25.0% |
| ! | TTGATGAAGTGAAAAATCAA+AGG | + | chr5_2:46401453-46401472 | Msa0772190:CDS | 25.0% |
| ! | TTAGAGAAATCAATAGATAC+AGG | + | chr5_2:46401707-46401726 | Msa0772190:CDS | 25.0% |
| !! | AATTTTATTCAATCACACAG+TGG | + | chr5_2:46401761-46401780 | Msa0772190:CDS | 25.0% |
| ! | ATGTAAAAGTCTGAAAGATA+TGG | + | chr5_2:46401823-46401842 | Msa0772190:CDS | 25.0% |
| ! | ACAAACTAGAGCATATTATT+TGG | + | chr5_2:46401885-46401904 | Msa0772190:CDS | 25.0% |
| ! | CAAACTAGAGCATATTATTT+GGG | + | chr5_2:46401886-46401905 | Msa0772190:CDS | 25.0% |
| !! | CATGGAAATTCAATTTTCTT+TGG | + | chr5_2:46402025-46402044 | Msa0772190:CDS | 25.0% |
| !!! | CTTTCGTTTTTCAAATGATA+GGG | + | chr5_2:46400885-46400904 | Msa0772190:intron | 25.0% |
| ! | TAAGAAATAATGCTAGTGAT+TGG | + | chr5_2:46401112-46401131 | Msa0772190:intron | 25.0% |
| ! | ACATATGAAGATGATGAATA+TGG | + | chr5_2:46401164-46401183 | Msa0772190:CDS | 25.0% |
| ! | AATGTATTTGCACGAAAAAA+TGG | + | chr5_2:46401308-46401327 | Msa0772190:CDS | 25.0% |
| !!! | GAAAAAATGGATTTTCGATT+AGG | + | chr5_2:46401321-46401340 | Msa0772190:CDS | 25.0% |
| ! | TTGATGAAGTGAAAAATCAA+AGG | + | chr5_2:46401453-46401472 | Msa0772190:CDS | 25.0% |
| ! | TTAGAGAAATCAATAGATAC+AGG | + | chr5_2:46401707-46401726 | Msa0772190:CDS | 25.0% |
| !! | AATTTTATTCAATCACACAG+TGG | + | chr5_2:46401761-46401780 | Msa0772190:CDS | 25.0% |
| ! | ATGTAAAAGTCTGAAAGATA+TGG | + | chr5_2:46401823-46401842 | Msa0772190:CDS | 25.0% |
| ! | ACAAACTAGAGCATATTATT+TGG | + | chr5_2:46401885-46401904 | Msa0772190:CDS | 25.0% |
| ! | CAAACTAGAGCATATTATTT+GGG | + | chr5_2:46401886-46401905 | Msa0772190:CDS | 25.0% |
| !! | CATGGAAATTCAATTTTCTT+TGG | + | chr5_2:46402025-46402044 | Msa0772190:CDS | 25.0% |
| CCTATCATTTGAAAAACGAA+AGG | - | chr5_2:46400887-46400906 | None:intergenic | 30.0% | |
| !! | CCTTTCGTTTTTCAAATGAT+AGG | + | chr5_2:46400884-46400903 | Msa0772190:intron | 30.0% |
| !!! | ATGTGGGTTTTTAGTTTGAT+GGG | + | chr5_2:46400910-46400929 | Msa0772190:intron | 30.0% |
| ! | AACTAGTACTGTTGATGAAT+GGG | + | chr5_2:46401232-46401251 | Msa0772190:CDS | 30.0% |
| AAAGGAAACAGAAATCTTCA+AGG | + | chr5_2:46401471-46401490 | Msa0772190:CDS | 30.0% | |
| CCTTATCATCTAATATCTCA+TGG | - | chr5_2:46401577-46401596 | None:intergenic | 30.0% | |
| CCATGAGATATTAGATGATA+AGG | + | chr5_2:46401574-46401593 | Msa0772190:CDS | 30.0% | |
| TGAGATATTAGATGATAAGG+AGG | + | chr5_2:46401577-46401596 | Msa0772190:CDS | 30.0% | |
| !! | TACGATTTTGATCGTCAATT+GGG | - | chr5_2:46401631-46401650 | None:intergenic | 30.0% |
| !! | ATACGATTTTGATCGTCAAT+TGG | - | chr5_2:46401632-46401651 | None:intergenic | 30.0% |
| ! | ATTCGAGCATATGAATCTTT+TGG | + | chr5_2:46401923-46401942 | Msa0772190:CDS | 30.0% |
| !!! | ATATGAATCTTTTGGTGATG+TGG | + | chr5_2:46401931-46401950 | Msa0772190:CDS | 30.0% |
| AGAAGAAATCTTCATTCAGA+TGG | + | chr5_2:46402068-46402087 | Msa0772190:CDS | 30.0% | |
| GAAGAAATCTTCATTCAGAT+GGG | + | chr5_2:46402069-46402088 | Msa0772190:CDS | 30.0% | |
| CCTATCATTTGAAAAACGAA+AGG | - | chr5_2:46400887-46400906 | None:intergenic | 30.0% | |
| !! | CCTTTCGTTTTTCAAATGAT+AGG | + | chr5_2:46400884-46400903 | Msa0772190:intron | 30.0% |
| !!! | ATGTGGGTTTTTAGTTTGAT+GGG | + | chr5_2:46400910-46400929 | Msa0772190:intron | 30.0% |
| ! | AACTAGTACTGTTGATGAAT+GGG | + | chr5_2:46401232-46401251 | Msa0772190:CDS | 30.0% |
| AAAGGAAACAGAAATCTTCA+AGG | + | chr5_2:46401471-46401490 | Msa0772190:CDS | 30.0% | |
| CCTTATCATCTAATATCTCA+TGG | - | chr5_2:46401577-46401596 | None:intergenic | 30.0% | |
| CCATGAGATATTAGATGATA+AGG | + | chr5_2:46401574-46401593 | Msa0772190:CDS | 30.0% | |
| TGAGATATTAGATGATAAGG+AGG | + | chr5_2:46401577-46401596 | Msa0772190:CDS | 30.0% | |
| !! | TACGATTTTGATCGTCAATT+GGG | - | chr5_2:46401631-46401650 | None:intergenic | 30.0% |
| !! | ATACGATTTTGATCGTCAAT+TGG | - | chr5_2:46401632-46401651 | None:intergenic | 30.0% |
| ! | ATTCGAGCATATGAATCTTT+TGG | + | chr5_2:46401923-46401942 | Msa0772190:CDS | 30.0% |
| !!! | ATATGAATCTTTTGGTGATG+TGG | + | chr5_2:46401931-46401950 | Msa0772190:CDS | 30.0% |
| AGAAGAAATCTTCATTCAGA+TGG | + | chr5_2:46402068-46402087 | Msa0772190:CDS | 30.0% | |
| GAAGAAATCTTCATTCAGAT+GGG | + | chr5_2:46402069-46402088 | Msa0772190:CDS | 30.0% | |
| ! | AATCTTGTTGTAGCAAGCAA+AGG | - | chr5_2:46400808-46400827 | None:intergenic | 35.0% |
| TTTCAAATGATAGGGACATG+TGG | + | chr5_2:46400893-46400912 | Msa0772190:intron | 35.0% | |
| TTCAAATGATAGGGACATGT+GGG | + | chr5_2:46400894-46400913 | Msa0772190:intron | 35.0% | |
| !!! | CATGTGGGTTTTTAGTTTGA+TGG | + | chr5_2:46400909-46400928 | Msa0772190:intron | 35.0% |
| ! | GAACTAGTACTGTTGATGAA+TGG | + | chr5_2:46401231-46401250 | Msa0772190:CDS | 35.0% |
| GAGTATGAAGATAATCCATC+AGG | + | chr5_2:46401374-46401393 | Msa0772190:CDS | 35.0% | |
| TCTCTGTTATAAACTCCTGA+TGG | - | chr5_2:46401392-46401411 | None:intergenic | 35.0% | |
| !! | GCAAAGTTGTTGGTTTCTAA+AGG | + | chr5_2:46401506-46401525 | Msa0772190:CDS | 35.0% |
| TAAAGGCTTCGAAGGAAAAT+GGG | + | chr5_2:46401523-46401542 | Msa0772190:CDS | 35.0% | |
| CATCTAATATCTCATGGTTG+TGG | - | chr5_2:46401571-46401590 | None:intergenic | 35.0% | |
| TACAGGTAACTTACCATTTC+TGG | + | chr5_2:46401724-46401743 | Msa0772190:CDS | 35.0% | |
| ! | TAACTTACCATTTCTGGAGA+AGG | + | chr5_2:46401730-46401749 | Msa0772190:CDS | 35.0% |
| CTAATATCCTTCTCCAGAAA+TGG | - | chr5_2:46401740-46401759 | None:intergenic | 35.0% | |
| GAGCATATTATTTGGGCATT+TGG | + | chr5_2:46401893-46401912 | Msa0772190:CDS | 35.0% | |
| TTCCAAGTGGCATATCATAA+CGG | - | chr5_2:46401985-46402004 | None:intergenic | 35.0% | |
| ! | TTCATTCAGATGGGCTTTAA+AGG | + | chr5_2:46402078-46402097 | Msa0772190:CDS | 35.0% |
| ! | AATCTTGTTGTAGCAAGCAA+AGG | - | chr5_2:46400808-46400827 | None:intergenic | 35.0% |
| TTTCAAATGATAGGGACATG+TGG | + | chr5_2:46400893-46400912 | Msa0772190:intron | 35.0% | |
| TTCAAATGATAGGGACATGT+GGG | + | chr5_2:46400894-46400913 | Msa0772190:intron | 35.0% | |
| !!! | CATGTGGGTTTTTAGTTTGA+TGG | + | chr5_2:46400909-46400928 | Msa0772190:intron | 35.0% |
| ! | GAACTAGTACTGTTGATGAA+TGG | + | chr5_2:46401231-46401250 | Msa0772190:CDS | 35.0% |
| GAGTATGAAGATAATCCATC+AGG | + | chr5_2:46401374-46401393 | Msa0772190:CDS | 35.0% | |
| TCTCTGTTATAAACTCCTGA+TGG | - | chr5_2:46401392-46401411 | None:intergenic | 35.0% | |
| !! | GCAAAGTTGTTGGTTTCTAA+AGG | + | chr5_2:46401506-46401525 | Msa0772190:CDS | 35.0% |
| TAAAGGCTTCGAAGGAAAAT+GGG | + | chr5_2:46401523-46401542 | Msa0772190:CDS | 35.0% | |
| CATCTAATATCTCATGGTTG+TGG | - | chr5_2:46401571-46401590 | None:intergenic | 35.0% | |
| TACAGGTAACTTACCATTTC+TGG | + | chr5_2:46401724-46401743 | Msa0772190:CDS | 35.0% | |
| ! | TAACTTACCATTTCTGGAGA+AGG | + | chr5_2:46401730-46401749 | Msa0772190:CDS | 35.0% |
| CTAATATCCTTCTCCAGAAA+TGG | - | chr5_2:46401740-46401759 | None:intergenic | 35.0% | |
| GAGCATATTATTTGGGCATT+TGG | + | chr5_2:46401893-46401912 | Msa0772190:CDS | 35.0% | |
| TTCCAAGTGGCATATCATAA+CGG | - | chr5_2:46401985-46402004 | None:intergenic | 35.0% | |
| ! | TTCATTCAGATGGGCTTTAA+AGG | + | chr5_2:46402078-46402097 | Msa0772190:CDS | 35.0% |
| ACAGTACTAGTTCCAAGTTG+AGG | - | chr5_2:46401224-46401243 | None:intergenic | 40.0% | |
| !! | GATGAATGGGTTCCTTTTGA+AGG | + | chr5_2:46401245-46401264 | Msa0772190:CDS | 40.0% |
| ! | GAATTTGTTTGTCATCGAGC+TGG | + | chr5_2:46401410-46401429 | Msa0772190:CDS | 40.0% |
| TAGTTGTAGCGCAAAGTTGT+TGG | + | chr5_2:46401496-46401515 | Msa0772190:CDS | 40.0% | |
| ! | TTGGTTTCTAAAGGCTTCGA+AGG | + | chr5_2:46401515-46401534 | Msa0772190:CDS | 40.0% |
| CTAAAGGCTTCGAAGGAAAA+TGG | + | chr5_2:46401522-46401541 | Msa0772190:CDS | 40.0% | |
| AACCGTTATGATATGCCACT+TGG | + | chr5_2:46401980-46401999 | Msa0772190:CDS | 40.0% | |
| ! | ATGATATGCCACTTGGAATG+TGG | + | chr5_2:46401987-46402006 | Msa0772190:CDS | 40.0% |
| !! | TGGATTGGGGTTGATAATCA+TGG | + | chr5_2:46402007-46402026 | Msa0772190:CDS | 40.0% |
| ACAGTACTAGTTCCAAGTTG+AGG | - | chr5_2:46401224-46401243 | None:intergenic | 40.0% | |
| !! | GATGAATGGGTTCCTTTTGA+AGG | + | chr5_2:46401245-46401264 | Msa0772190:CDS | 40.0% |
| ! | GAATTTGTTTGTCATCGAGC+TGG | + | chr5_2:46401410-46401429 | Msa0772190:CDS | 40.0% |
| TAGTTGTAGCGCAAAGTTGT+TGG | + | chr5_2:46401496-46401515 | Msa0772190:CDS | 40.0% | |
| ! | TTGGTTTCTAAAGGCTTCGA+AGG | + | chr5_2:46401515-46401534 | Msa0772190:CDS | 40.0% |
| CTAAAGGCTTCGAAGGAAAA+TGG | + | chr5_2:46401522-46401541 | Msa0772190:CDS | 40.0% | |
| AACCGTTATGATATGCCACT+TGG | + | chr5_2:46401980-46401999 | Msa0772190:CDS | 40.0% | |
| ! | ATGATATGCCACTTGGAATG+TGG | + | chr5_2:46401987-46402006 | Msa0772190:CDS | 40.0% |
| !! | TGGATTGGGGTTGATAATCA+TGG | + | chr5_2:46402007-46402026 | Msa0772190:CDS | 40.0% |
| ! | CCAAGTTGAGGTTCTTGATG+TGG | - | chr5_2:46401212-46401231 | None:intergenic | 45.0% |
| CCACATCAAGAACCTCAACT+TGG | + | chr5_2:46401209-46401228 | Msa0772190:CDS | 45.0% | |
| ! | ATGCCACTTGGAATGTGGAT+TGG | + | chr5_2:46401992-46402011 | Msa0772190:CDS | 45.0% |
| ! | TGCCACTTGGAATGTGGATT+GGG | + | chr5_2:46401993-46402012 | Msa0772190:CDS | 45.0% |
| ! | CCAAGTTGAGGTTCTTGATG+TGG | - | chr5_2:46401212-46401231 | None:intergenic | 45.0% |
| CCACATCAAGAACCTCAACT+TGG | + | chr5_2:46401209-46401228 | Msa0772190:CDS | 45.0% | |
| ! | ATGCCACTTGGAATGTGGAT+TGG | + | chr5_2:46401992-46402011 | Msa0772190:CDS | 45.0% |
| ! | TGCCACTTGGAATGTGGATT+GGG | + | chr5_2:46401993-46402012 | Msa0772190:CDS | 45.0% |
| AGGCTTCGAAGGAAAATGGG+TGG | + | chr5_2:46401526-46401545 | Msa0772190:CDS | 50.0% | |
| ! | GCCACTTGGAATGTGGATTG+GGG | + | chr5_2:46401994-46402013 | Msa0772190:CDS | 50.0% |
| ACCCCAATCCACATTCCAAG+TGG | - | chr5_2:46401998-46402017 | None:intergenic | 50.0% | |
| AGGCTTCGAAGGAAAATGGG+TGG | + | chr5_2:46401526-46401545 | Msa0772190:CDS | 50.0% | |
| ! | GCCACTTGGAATGTGGATTG+GGG | + | chr5_2:46401994-46402013 | Msa0772190:CDS | 50.0% |
| ACCCCAATCCACATTCCAAG+TGG | - | chr5_2:46401998-46402017 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 46400792 | 46402141 | 46400792 | ID=Msa0772190;Name=Msa0772190 |
| chr5_2 | mRNA | 46400792 | 46402141 | 46400792 | ID=Msa0772190-mRNA-1;Parent=Msa0772190;Name=Msa0772190-mRNA-1;_AED=0.25;_eAED=0.26;_QI=0|0|0|0.33|0|0|3|0|333 |
| chr5_2 | exon | 46400792 | 46400797 | 46400792 | ID=Msa0772190-mRNA-1:exon:13891;Parent=Msa0772190-mRNA-1 |
| chr5_2 | exon | 46400953 | 46400960 | 46400953 | ID=Msa0772190-mRNA-1:exon:13892;Parent=Msa0772190-mRNA-1 |
| chr5_2 | exon | 46401154 | 46402141 | 46401154 | ID=Msa0772190-mRNA-1:exon:13893;Parent=Msa0772190-mRNA-1 |
| chr5_2 | CDS | 46400792 | 46400797 | 46400792 | ID=Msa0772190-mRNA-1:cds;Parent=Msa0772190-mRNA-1 |
| chr5_2 | CDS | 46400953 | 46400960 | 46400953 | ID=Msa0772190-mRNA-1:cds;Parent=Msa0772190-mRNA-1 |
| chr5_2 | CDS | 46401154 | 46402141 | 46401154 | ID=Msa0772190-mRNA-1:cds;Parent=Msa0772190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
