Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772630 | G7K9F0 | 73.333 | 180 | 34 | 4 | 1 | 168 | 1 | 178 | 6.79e-65 | 206 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0772630 | TF | WRKY |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772630 | MtrunA17_Chr5g0402931 | 73.333 | 180 | 34 | 4 | 1 | 168 | 1 | 178 | 1.31e-68 | 206 |
| Msa0772630 | MtrunA17_Chr5g0402951 | 52.542 | 118 | 46 | 4 | 1 | 112 | 1 | 114 | 4.31e-24 | 97.1 |
| Msa0772630 | MtrunA17_Chr5g0402961 | 55.238 | 105 | 37 | 5 | 1 | 96 | 1 | 104 | 2.47e-13 | 67.0 |
| Msa0772630 | MtrunA17_Chr1g0147881 | 51.613 | 62 | 27 | 2 | 116 | 174 | 265 | 326 | 6.16e-13 | 65.9 |
| Msa0772630 | MtrunA17_Chr5g0401821 | 50.877 | 57 | 25 | 2 | 116 | 169 | 202 | 258 | 1.65e-11 | 61.2 |
| Msa0772630 | MtrunA17_Chr4g0053281 | 51.724 | 58 | 25 | 2 | 115 | 169 | 268 | 325 | 1.77e-11 | 61.6 |
| Msa0772630 | MtrunA17_Chr1g0184691 | 51.786 | 56 | 24 | 2 | 115 | 167 | 295 | 350 | 9.89e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772630 | AT2G23320.1 | 51.724 | 58 | 25 | 2 | 115 | 169 | 242 | 299 | 2.99e-11 | 61.2 |
| Msa0772630 | AT4G31550.2 | 57.692 | 52 | 19 | 2 | 116 | 164 | 248 | 299 | 6.28e-11 | 60.5 |
| Msa0772630 | AT4G31550.1 | 57.692 | 52 | 19 | 2 | 116 | 164 | 249 | 300 | 6.36e-11 | 60.5 |
Find 42 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAGGGGATTTGGGGTTCT+TGG | 0.229670 | 5_2:+46955922 | None:intergenic |
| TCGTGAAAGAATGGGAAAAT+TGG | 0.231845 | 5_2:-46956002 | Msa0772630:CDS |
| GTTGAGAGAAACAGGGGATT+TGG | 0.244900 | 5_2:+46955913 | None:intergenic |
| TTGAGAGAAACAGGGGATTT+GGG | 0.251244 | 5_2:+46955914 | None:intergenic |
| CCGAGAAAATCGTGAAAGAA+TGG | 0.405376 | 5_2:-46956011 | Msa0772630:CDS |
| CGTGAAAGAATGGGAAAATT+GGG | 0.409003 | 5_2:-46956001 | Msa0772630:CDS |
| CGATCCTCGTATTTCCTCGC+TGG | 0.420110 | 5_2:+46954622 | None:intergenic |
| TGGTCATCGTAACGTACAAT+GGG | 0.429436 | 5_2:-46954579 | Msa0772630:CDS |
| GTGAAGGTGGCTTAGGTTTG+AGG | 0.436792 | 5_2:+46955957 | None:intergenic |
| AACTACACGTGGTGGAAATA+CGG | 0.437577 | 5_2:-46955753 | Msa0772630:CDS |
| TGTTGAGAATCCTCCTCAAA+TGG | 0.445286 | 5_2:-46956092 | Msa0772630:CDS |
| GGATTTGGGGTTCTTGGAAA+CGG | 0.450649 | 5_2:+46955928 | None:intergenic |
| GTTGGACGTGAAGGTGGCTT+AGG | 0.454037 | 5_2:+46955950 | None:intergenic |
| GCTTCTTCAGTGTAATGAAT+CGG | 0.476213 | 5_2:+46955825 | None:intergenic |
| CGAGAAAATCGTGAAAGAAT+GGG | 0.487151 | 5_2:-46956010 | Msa0772630:CDS |
| TTGGGGTTCTTGGAAACGGT+TGG | 0.488034 | 5_2:+46955932 | None:intergenic |
| TGTTTGTGATCTTCCATTTG+AGG | 0.497029 | 5_2:+46956079 | None:intergenic |
| TGAAGGTGGCTTAGGTTTGA+GGG | 0.497200 | 5_2:+46955958 | None:intergenic |
| GCAATTCACCATGCTACACT+TGG | 0.505881 | 5_2:+46954645 | None:intergenic |
| ATACGGTCGTTATCAGATCA+AGG | 0.519956 | 5_2:-46955736 | Msa0772630:CDS |
| AGAGAATTTACGTGGAAAAG+AGG | 0.527212 | 5_2:-46955794 | Msa0772630:CDS |
| GTGGTCATCGTAACGTACAA+TGG | 0.534478 | 5_2:-46954580 | Msa0772630:CDS |
| CTACTTCGCTTTCGCAGACG+AGG | 0.547812 | 5_2:+46956124 | None:intergenic |
| TTGTGATCTTCCATTTGAGG+AGG | 0.549172 | 5_2:+46956082 | None:intergenic |
| GATCCTCGTATTTCCTCGCT+GGG | 0.560555 | 5_2:+46954623 | None:intergenic |
| TTGGAAACGGTTGGACGTGA+AGG | 0.565726 | 5_2:+46955941 | None:intergenic |
| TGAGAGAAACAGGGGATTTG+GGG | 0.572526 | 5_2:+46955915 | None:intergenic |
| GAGAATTTACGTGGAAAAGA+GGG | 0.576655 | 5_2:-46955793 | Msa0772630:CDS |
| GAAACGGTTGGACGTGAAGG+TGG | 0.592441 | 5_2:+46955944 | None:intergenic |
| TACGTTACGATGACCACCGT+TGG | 0.600577 | 5_2:+46954586 | None:intergenic |
| TACGGTCGTTATCAGATCAA+GGG | 0.616705 | 5_2:-46955735 | Msa0772630:CDS |
| GGAAGAGACATATCCTCTGA+AGG | 0.623449 | 5_2:-46954557 | Msa0772630:CDS |
| AGATTATTCCAAGTGTAGCA+TGG | 0.624298 | 5_2:-46954653 | Msa0772630:CDS |
| CTTCATCTAACTACACGTGG+TGG | 0.625613 | 5_2:-46955761 | Msa0772630:CDS |
| ATCAGATCAAGGGCTCAACA+AGG | 0.679629 | 5_2:-46955725 | Msa0772630:intron |
| AAACTTCATCTAACTACACG+TGG | 0.681056 | 5_2:-46955764 | Msa0772630:CDS |
| AATTAACAAGAGAATTTACG+TGG | 0.685647 | 5_2:-46955802 | Msa0772630:CDS |
| TCGTGCACGAGATGATCCAA+CGG | 0.690601 | 5_2:-46954602 | Msa0772630:CDS |
| TTGCCCAGCGAGGAAATACG+AGG | 0.701881 | 5_2:-46954626 | Msa0772630:CDS |
| GCATGGTGAATTGCCCAGCG+AGG | 0.722194 | 5_2:-46954636 | Msa0772630:CDS |
| TGCACGAGATGATCCAACGG+TGG | 0.730962 | 5_2:-46954599 | Msa0772630:CDS |
| GGTCATCGTAACGTACAATG+GGG | 0.758559 | 5_2:-46954578 | Msa0772630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTAATGTTATATTGTAT+TGG | - | chr5_2:46955045-46955064 | Msa0772630:intron | 10.0% |
| !! | ATTTAATGTTATATTGTATT+GGG | - | chr5_2:46955046-46955065 | Msa0772630:intron | 10.0% |
| !! | TATTTAATGTTATATTGTAT+TGG | - | chr5_2:46955045-46955064 | Msa0772630:intron | 10.0% |
| !! | ATTTAATGTTATATTGTATT+GGG | - | chr5_2:46955046-46955065 | Msa0772630:intron | 10.0% |
| !!! | GACACTTTTTTTTAAAAAAT+GGG | - | chr5_2:46955115-46955134 | Msa0772630:intron | 15.0% |
| !!! | TAAAAGTAAAGTGTTTTTTA+GGG | + | chr5_2:46955192-46955211 | None:intergenic | 15.0% |
| !!! | ATATTTTGATTAACAAAATG+TGG | + | chr5_2:46955529-46955548 | None:intergenic | 15.0% |
| !! | AAAAGTTAAAACATAACTAA+CGG | + | chr5_2:46955932-46955951 | None:intergenic | 15.0% |
| !!! | GACACTTTTTTTTAAAAAAT+GGG | - | chr5_2:46955115-46955134 | Msa0772630:intron | 15.0% |
| !!! | TAAAAGTAAAGTGTTTTTTA+GGG | + | chr5_2:46955192-46955211 | None:intergenic | 15.0% |
| !!! | ATATTTTGATTAACAAAATG+TGG | + | chr5_2:46955529-46955548 | None:intergenic | 15.0% |
| !! | AAAAGTTAAAACATAACTAA+CGG | + | chr5_2:46955932-46955951 | None:intergenic | 15.0% |
| !!! | AATGAAAGATTGAATTTTGA+GGG | + | chr5_2:46954803-46954822 | None:intergenic | 20.0% |
| !!! | AAATGAAAGATTGAATTTTG+AGG | + | chr5_2:46954804-46954823 | None:intergenic | 20.0% |
| !!! | GGACACTTTTTTTTAAAAAA+TGG | - | chr5_2:46955114-46955133 | Msa0772630:intron | 20.0% |
| !!! | GTAAAAGTAAAGTGTTTTTT+AGG | + | chr5_2:46955193-46955212 | None:intergenic | 20.0% |
| !! | TAATATAATATTGACACAAG+AGG | + | chr5_2:46955357-46955376 | None:intergenic | 20.0% |
| !!! | TATTTGAAAGTGTTCTATAA+AGG | - | chr5_2:46955874-46955893 | Msa0772630:intron | 20.0% |
| !!! | ACAAAAAAGAAATCAACTTT+TGG | + | chr5_2:46955970-46955989 | None:intergenic | 20.0% |
| !!! | AATGAAAGATTGAATTTTGA+GGG | + | chr5_2:46954803-46954822 | None:intergenic | 20.0% |
| !!! | AAATGAAAGATTGAATTTTG+AGG | + | chr5_2:46954804-46954823 | None:intergenic | 20.0% |
| !!! | GGACACTTTTTTTTAAAAAA+TGG | - | chr5_2:46955114-46955133 | Msa0772630:intron | 20.0% |
| !!! | GTAAAAGTAAAGTGTTTTTT+AGG | + | chr5_2:46955193-46955212 | None:intergenic | 20.0% |
| !! | TAATATAATATTGACACAAG+AGG | + | chr5_2:46955357-46955376 | None:intergenic | 20.0% |
| !!! | TATTTGAAAGTGTTCTATAA+AGG | - | chr5_2:46955874-46955893 | Msa0772630:intron | 20.0% |
| !!! | ACAAAAAAGAAATCAACTTT+TGG | + | chr5_2:46955970-46955989 | None:intergenic | 20.0% |
| ! | AATTAACAAGAGAATTTACG+TGG | - | chr5_2:46954850-46954869 | Msa0772630:intron | 25.0% |
| ! | CCAATACAATATATTCCAAA+GGG | + | chr5_2:46955007-46955026 | None:intergenic | 25.0% |
| !!! | CCTTTGGAATATATTGTATT+GGG | - | chr5_2:46955005-46955024 | Msa0772630:intron | 25.0% |
| !! | TTGAAATGACTCAGTTATTT+TGG | - | chr5_2:46955092-46955111 | Msa0772630:intron | 25.0% |
| !!! | TGAAATGACTCAGTTATTTT+GGG | - | chr5_2:46955093-46955112 | Msa0772630:intron | 25.0% |
| ! | TAAGCAAGTAGTCAAATAAA+AGG | - | chr5_2:46955759-46955778 | Msa0772630:CDS | 25.0% |
| ! | TCGAAATACTTGTAATTTCA+TGG | - | chr5_2:46955817-46955836 | Msa0772630:CDS | 25.0% |
| ! | AATTAACAAGAGAATTTACG+TGG | - | chr5_2:46954850-46954869 | Msa0772630:intron | 25.0% |
| ! | CCAATACAATATATTCCAAA+GGG | + | chr5_2:46955007-46955026 | None:intergenic | 25.0% |
| !!! | CCTTTGGAATATATTGTATT+GGG | - | chr5_2:46955005-46955024 | Msa0772630:intron | 25.0% |
| !! | TTGAAATGACTCAGTTATTT+TGG | - | chr5_2:46955092-46955111 | Msa0772630:intron | 25.0% |
| !!! | TGAAATGACTCAGTTATTTT+GGG | - | chr5_2:46955093-46955112 | Msa0772630:intron | 25.0% |
| ! | TAAGCAAGTAGTCAAATAAA+AGG | - | chr5_2:46955759-46955778 | Msa0772630:CDS | 25.0% |
| ! | TCGAAATACTTGTAATTTCA+TGG | - | chr5_2:46955817-46955836 | Msa0772630:CDS | 25.0% |
| !! | TTGAATTTTGAGGGTGAAAA+TGG | + | chr5_2:46954794-46954813 | None:intergenic | 30.0% |
| !! | CCCTTTGGAATATATTGTAT+TGG | - | chr5_2:46955004-46955023 | Msa0772630:intron | 30.0% |
| CCCAATACAATATATTCCAA+AGG | + | chr5_2:46955008-46955027 | None:intergenic | 30.0% | |
| AAAAAATGGGTCAGATATTC+CGG | - | chr5_2:46955128-46955147 | Msa0772630:intron | 30.0% | |
| TTACTTAGTGTGTGTTTGTT+TGG | - | chr5_2:46955209-46955228 | Msa0772630:intron | 30.0% | |
| CTTGAAACTTAATCACGTTT+GGG | - | chr5_2:46955238-46955257 | Msa0772630:intron | 30.0% | |
| !! | AATGCAATGGAAATTGGTTT+TGG | - | chr5_2:46955307-46955326 | Msa0772630:intron | 30.0% |
| !!! | ATGCAATGGAAATTGGTTTT+GGG | - | chr5_2:46955308-46955327 | Msa0772630:intron | 30.0% |
| TATATTACCCAGTCATGAAT+CGG | - | chr5_2:46955663-46955682 | Msa0772630:intron | 30.0% | |
| CTATAAAGGAGAGATTAATC+TGG | - | chr5_2:46955888-46955907 | Msa0772630:intron | 30.0% | |
| !!! | AAGGAGTTTTTTAAGAGACA+TGG | - | chr5_2:46956114-46956133 | Msa0772630:CDS | 30.0% |
| !!! | AGGAGTTTTTTAAGAGACAT+GGG | - | chr5_2:46956115-46956134 | Msa0772630:CDS | 30.0% |
| !! | TTGAATTTTGAGGGTGAAAA+TGG | + | chr5_2:46954794-46954813 | None:intergenic | 30.0% |
| !! | CCCTTTGGAATATATTGTAT+TGG | - | chr5_2:46955004-46955023 | Msa0772630:intron | 30.0% |
| CCCAATACAATATATTCCAA+AGG | + | chr5_2:46955008-46955027 | None:intergenic | 30.0% | |
| AAAAAATGGGTCAGATATTC+CGG | - | chr5_2:46955128-46955147 | Msa0772630:intron | 30.0% | |
| TTACTTAGTGTGTGTTTGTT+TGG | - | chr5_2:46955209-46955228 | Msa0772630:intron | 30.0% | |
| CTTGAAACTTAATCACGTTT+GGG | - | chr5_2:46955238-46955257 | Msa0772630:intron | 30.0% | |
| !! | AATGCAATGGAAATTGGTTT+TGG | - | chr5_2:46955307-46955326 | Msa0772630:intron | 30.0% |
| !!! | ATGCAATGGAAATTGGTTTT+GGG | - | chr5_2:46955308-46955327 | Msa0772630:intron | 30.0% |
| TATATTACCCAGTCATGAAT+CGG | - | chr5_2:46955663-46955682 | Msa0772630:intron | 30.0% | |
| CTATAAAGGAGAGATTAATC+TGG | - | chr5_2:46955888-46955907 | Msa0772630:intron | 30.0% | |
| !!! | AAGGAGTTTTTTAAGAGACA+TGG | - | chr5_2:46956114-46956133 | Msa0772630:CDS | 30.0% |
| !!! | AGGAGTTTTTTAAGAGACAT+GGG | - | chr5_2:46956115-46956134 | Msa0772630:CDS | 30.0% |
| TGTTTGTGATCTTCCATTTG+AGG | + | chr5_2:46954576-46954595 | None:intergenic | 35.0% | |
| ! | CCATTCTTTCACGATTTTCT+CGG | + | chr5_2:46954644-46954663 | None:intergenic | 35.0% |
| CGAGAAAATCGTGAAAGAAT+GGG | - | chr5_2:46954642-46954661 | Msa0772630:CDS | 35.0% | |
| TCGTGAAAGAATGGGAAAAT+TGG | - | chr5_2:46954650-46954669 | Msa0772630:CDS | 35.0% | |
| CGTGAAAGAATGGGAAAATT+GGG | - | chr5_2:46954651-46954670 | Msa0772630:CDS | 35.0% | |
| GCTTCTTCAGTGTAATGAAT+CGG | + | chr5_2:46954830-46954849 | None:intergenic | 35.0% | |
| AGAGAATTTACGTGGAAAAG+AGG | - | chr5_2:46954858-46954877 | Msa0772630:intron | 35.0% | |
| GAGAATTTACGTGGAAAAGA+GGG | - | chr5_2:46954859-46954878 | Msa0772630:intron | 35.0% | |
| AAACTTCATCTAACTACACG+TGG | - | chr5_2:46954888-46954907 | Msa0772630:intron | 35.0% | |
| TCCAAAGGGTCAGATAAATT+GGG | + | chr5_2:46954993-46955012 | None:intergenic | 35.0% | |
| TTCCAAAGGGTCAGATAAAT+TGG | + | chr5_2:46954994-46955013 | None:intergenic | 35.0% | |
| AAAAATGGGTCAGATATTCC+GGG | - | chr5_2:46955129-46955148 | Msa0772630:intron | 35.0% | |
| TAGTGTGTGTTTGTTTGGTT+TGG | - | chr5_2:46955214-46955233 | Msa0772630:intron | 35.0% | |
| CCAAACGTGATTAAGTTTCA+AGG | + | chr5_2:46955240-46955259 | None:intergenic | 35.0% | |
| CCTTGAAACTTAATCACGTT+TGG | - | chr5_2:46955237-46955256 | Msa0772630:intron | 35.0% | |
| ! | ATTGCATTTTCACCGTGATT+TGG | + | chr5_2:46955295-46955314 | None:intergenic | 35.0% |
| AAATCACGGTGAAAATGCAA+TGG | - | chr5_2:46955294-46955313 | Msa0772630:intron | 35.0% | |
| GGTGAAAATGCAATGGAAAT+TGG | - | chr5_2:46955301-46955320 | Msa0772630:intron | 35.0% | |
| AGGATGTTTGGAAACAAGTT+TGG | + | chr5_2:46955337-46955356 | None:intergenic | 35.0% | |
| TATTGACACAAGAGGATGTT+TGG | + | chr5_2:46955349-46955368 | None:intergenic | 35.0% | |
| TACAAATGACCAAAGTAGCA+TGG | - | chr5_2:46955454-46955473 | Msa0772630:intron | 35.0% | |
| !! | TGACTTTTACCATGCTACTT+TGG | + | chr5_2:46955466-46955485 | None:intergenic | 35.0% |
| GACTGGGTAATATAGTCATT+TGG | + | chr5_2:46955657-46955676 | None:intergenic | 35.0% | |
| GAAAGTGAGTGGATAAACTT+TGG | - | chr5_2:46955688-46955707 | Msa0772630:intron | 35.0% | |
| AGATTATTCCAAGTGTAGCA+TGG | - | chr5_2:46955999-46956018 | Msa0772630:CDS | 35.0% | |
| CTCTTAAAAAACTCCTTCAG+AGG | + | chr5_2:46956111-46956130 | None:intergenic | 35.0% | |
| TGTTTGTGATCTTCCATTTG+AGG | + | chr5_2:46954576-46954595 | None:intergenic | 35.0% | |
| ! | CCATTCTTTCACGATTTTCT+CGG | + | chr5_2:46954644-46954663 | None:intergenic | 35.0% |
| CGAGAAAATCGTGAAAGAAT+GGG | - | chr5_2:46954642-46954661 | Msa0772630:CDS | 35.0% | |
| TCGTGAAAGAATGGGAAAAT+TGG | - | chr5_2:46954650-46954669 | Msa0772630:CDS | 35.0% | |
| CGTGAAAGAATGGGAAAATT+GGG | - | chr5_2:46954651-46954670 | Msa0772630:CDS | 35.0% | |
| GCTTCTTCAGTGTAATGAAT+CGG | + | chr5_2:46954830-46954849 | None:intergenic | 35.0% | |
| AGAGAATTTACGTGGAAAAG+AGG | - | chr5_2:46954858-46954877 | Msa0772630:intron | 35.0% | |
| GAGAATTTACGTGGAAAAGA+GGG | - | chr5_2:46954859-46954878 | Msa0772630:intron | 35.0% | |
| AAACTTCATCTAACTACACG+TGG | - | chr5_2:46954888-46954907 | Msa0772630:intron | 35.0% | |
| TCCAAAGGGTCAGATAAATT+GGG | + | chr5_2:46954993-46955012 | None:intergenic | 35.0% | |
| TTCCAAAGGGTCAGATAAAT+TGG | + | chr5_2:46954994-46955013 | None:intergenic | 35.0% | |
| AAAAATGGGTCAGATATTCC+GGG | - | chr5_2:46955129-46955148 | Msa0772630:intron | 35.0% | |
| TAGTGTGTGTTTGTTTGGTT+TGG | - | chr5_2:46955214-46955233 | Msa0772630:intron | 35.0% | |
| CCAAACGTGATTAAGTTTCA+AGG | + | chr5_2:46955240-46955259 | None:intergenic | 35.0% | |
| CCTTGAAACTTAATCACGTT+TGG | - | chr5_2:46955237-46955256 | Msa0772630:intron | 35.0% | |
| ! | ATTGCATTTTCACCGTGATT+TGG | + | chr5_2:46955295-46955314 | None:intergenic | 35.0% |
| AAATCACGGTGAAAATGCAA+TGG | - | chr5_2:46955294-46955313 | Msa0772630:intron | 35.0% | |
| GGTGAAAATGCAATGGAAAT+TGG | - | chr5_2:46955301-46955320 | Msa0772630:intron | 35.0% | |
| AGGATGTTTGGAAACAAGTT+TGG | + | chr5_2:46955337-46955356 | None:intergenic | 35.0% | |
| TATTGACACAAGAGGATGTT+TGG | + | chr5_2:46955349-46955368 | None:intergenic | 35.0% | |
| TACAAATGACCAAAGTAGCA+TGG | - | chr5_2:46955454-46955473 | Msa0772630:intron | 35.0% | |
| !! | TGACTTTTACCATGCTACTT+TGG | + | chr5_2:46955466-46955485 | None:intergenic | 35.0% |
| GACTGGGTAATATAGTCATT+TGG | + | chr5_2:46955657-46955676 | None:intergenic | 35.0% | |
| GAAAGTGAGTGGATAAACTT+TGG | - | chr5_2:46955688-46955707 | Msa0772630:intron | 35.0% | |
| AGATTATTCCAAGTGTAGCA+TGG | - | chr5_2:46955999-46956018 | Msa0772630:CDS | 35.0% | |
| CTCTTAAAAAACTCCTTCAG+AGG | + | chr5_2:46956111-46956130 | None:intergenic | 35.0% | |
| TGTTGAGAATCCTCCTCAAA+TGG | - | chr5_2:46954560-46954579 | Msa0772630:CDS | 40.0% | |
| TTGTGATCTTCCATTTGAGG+AGG | + | chr5_2:46954573-46954592 | None:intergenic | 40.0% | |
| CCGAGAAAATCGTGAAAGAA+TGG | - | chr5_2:46954641-46954660 | Msa0772630:CDS | 40.0% | |
| TTGAGAGAAACAGGGGATTT+GGG | + | chr5_2:46954741-46954760 | None:intergenic | 40.0% | |
| ! | AACTACACGTGGTGGAAATA+CGG | - | chr5_2:46954899-46954918 | Msa0772630:intron | 40.0% |
| ATACGGTCGTTATCAGATCA+AGG | - | chr5_2:46954916-46954935 | Msa0772630:intron | 40.0% | |
| TACGGTCGTTATCAGATCAA+GGG | - | chr5_2:46954917-46954936 | Msa0772630:intron | 40.0% | |
| AAGGGTCAGATAAATTGGGA+CGG | + | chr5_2:46954989-46955008 | None:intergenic | 40.0% | |
| TCCCAATTTATCTGACCCTT+TGG | - | chr5_2:46954989-46955008 | Msa0772630:intron | 40.0% | |
| ! | GGAGTACTCCTTAACTTTCT+GGG | - | chr5_2:46955158-46955177 | Msa0772630:intron | 40.0% |
| ACTTGCATCCCAGAAAGTTA+AGG | + | chr5_2:46955169-46955188 | None:intergenic | 40.0% | |
| ! | CTTCAGCTTTAGCCAAATCA+CGG | - | chr5_2:46955280-46955299 | Msa0772630:intron | 40.0% |
| ! | CTTTCAACCGATTCATGACT+GGG | + | chr5_2:46955673-46955692 | None:intergenic | 40.0% |
| ! | ACTTTCAACCGATTCATGAC+TGG | + | chr5_2:46955674-46955693 | None:intergenic | 40.0% |
| ATGAATCGGTTGAAAGTGAG+TGG | - | chr5_2:46955677-46955696 | Msa0772630:intron | 40.0% | |
| TGGTCATCGTAACGTACAAT+GGG | - | chr5_2:46956073-46956092 | Msa0772630:CDS | 40.0% | |
| TGTTGAGAATCCTCCTCAAA+TGG | - | chr5_2:46954560-46954579 | Msa0772630:CDS | 40.0% | |
| TTGTGATCTTCCATTTGAGG+AGG | + | chr5_2:46954573-46954592 | None:intergenic | 40.0% | |
| CCGAGAAAATCGTGAAAGAA+TGG | - | chr5_2:46954641-46954660 | Msa0772630:CDS | 40.0% | |
| TTGAGAGAAACAGGGGATTT+GGG | + | chr5_2:46954741-46954760 | None:intergenic | 40.0% | |
| ! | AACTACACGTGGTGGAAATA+CGG | - | chr5_2:46954899-46954918 | Msa0772630:intron | 40.0% |
| ATACGGTCGTTATCAGATCA+AGG | - | chr5_2:46954916-46954935 | Msa0772630:intron | 40.0% | |
| TACGGTCGTTATCAGATCAA+GGG | - | chr5_2:46954917-46954936 | Msa0772630:intron | 40.0% | |
| AAGGGTCAGATAAATTGGGA+CGG | + | chr5_2:46954989-46955008 | None:intergenic | 40.0% | |
| TCCCAATTTATCTGACCCTT+TGG | - | chr5_2:46954989-46955008 | Msa0772630:intron | 40.0% | |
| ! | GGAGTACTCCTTAACTTTCT+GGG | - | chr5_2:46955158-46955177 | Msa0772630:intron | 40.0% |
| ACTTGCATCCCAGAAAGTTA+AGG | + | chr5_2:46955169-46955188 | None:intergenic | 40.0% | |
| ! | CTTCAGCTTTAGCCAAATCA+CGG | - | chr5_2:46955280-46955299 | Msa0772630:intron | 40.0% |
| ! | CTTTCAACCGATTCATGACT+GGG | + | chr5_2:46955673-46955692 | None:intergenic | 40.0% |
| ! | ACTTTCAACCGATTCATGAC+TGG | + | chr5_2:46955674-46955693 | None:intergenic | 40.0% |
| ATGAATCGGTTGAAAGTGAG+TGG | - | chr5_2:46955677-46955696 | Msa0772630:intron | 40.0% | |
| TGGTCATCGTAACGTACAAT+GGG | - | chr5_2:46956073-46956092 | Msa0772630:CDS | 40.0% | |
| TGAAGGTGGCTTAGGTTTGA+GGG | + | chr5_2:46954697-46954716 | None:intergenic | 45.0% | |
| ! | GGATTTGGGGTTCTTGGAAA+CGG | + | chr5_2:46954727-46954746 | None:intergenic | 45.0% |
| TGAGAGAAACAGGGGATTTG+GGG | + | chr5_2:46954740-46954759 | None:intergenic | 45.0% | |
| GTTGAGAGAAACAGGGGATT+TGG | + | chr5_2:46954742-46954761 | None:intergenic | 45.0% | |
| !! | AGATGGGTTGAGAGAAACAG+GGG | + | chr5_2:46954748-46954767 | None:intergenic | 45.0% |
| !! | GAGATGGGTTGAGAGAAACA+GGG | + | chr5_2:46954749-46954768 | None:intergenic | 45.0% |
| ACCTTGTAGATCGACGAGAT+GGG | + | chr5_2:46954764-46954783 | None:intergenic | 45.0% | |
| AACCTTGTAGATCGACGAGA+TGG | + | chr5_2:46954765-46954784 | None:intergenic | 45.0% | |
| CTTCATCTAACTACACGTGG+TGG | - | chr5_2:46954891-46954910 | Msa0772630:intron | 45.0% | |
| ATCAGATCAAGGGCTCAACA+AGG | - | chr5_2:46954927-46954946 | Msa0772630:intron | 45.0% | |
| GTCAGATAAATTGGGACGGA+GGG | + | chr5_2:46954985-46955004 | None:intergenic | 45.0% | |
| !! | GGGAGTACTCCTTAACTTTC+TGG | - | chr5_2:46955157-46955176 | Msa0772630:intron | 45.0% |
| GATTTGGCTAAAGCTGAAGC+TGG | + | chr5_2:46955279-46955298 | None:intergenic | 45.0% | |
| GCAATTCACCATGCTACACT+TGG | + | chr5_2:46956010-46956029 | None:intergenic | 45.0% | |
| GTGGTCATCGTAACGTACAA+TGG | - | chr5_2:46956072-46956091 | Msa0772630:CDS | 45.0% | |
| GGTCATCGTAACGTACAATG+GGG | - | chr5_2:46956074-46956093 | Msa0772630:CDS | 45.0% | |
| GGAAGAGACATATCCTCTGA+AGG | - | chr5_2:46956095-46956114 | Msa0772630:CDS | 45.0% | |
| TGAAGGTGGCTTAGGTTTGA+GGG | + | chr5_2:46954697-46954716 | None:intergenic | 45.0% | |
| ! | GGATTTGGGGTTCTTGGAAA+CGG | + | chr5_2:46954727-46954746 | None:intergenic | 45.0% |
| TGAGAGAAACAGGGGATTTG+GGG | + | chr5_2:46954740-46954759 | None:intergenic | 45.0% | |
| GTTGAGAGAAACAGGGGATT+TGG | + | chr5_2:46954742-46954761 | None:intergenic | 45.0% | |
| !! | AGATGGGTTGAGAGAAACAG+GGG | + | chr5_2:46954748-46954767 | None:intergenic | 45.0% |
| !! | GAGATGGGTTGAGAGAAACA+GGG | + | chr5_2:46954749-46954768 | None:intergenic | 45.0% |
| ACCTTGTAGATCGACGAGAT+GGG | + | chr5_2:46954764-46954783 | None:intergenic | 45.0% | |
| AACCTTGTAGATCGACGAGA+TGG | + | chr5_2:46954765-46954784 | None:intergenic | 45.0% | |
| CTTCATCTAACTACACGTGG+TGG | - | chr5_2:46954891-46954910 | Msa0772630:intron | 45.0% | |
| ATCAGATCAAGGGCTCAACA+AGG | - | chr5_2:46954927-46954946 | Msa0772630:intron | 45.0% | |
| GTCAGATAAATTGGGACGGA+GGG | + | chr5_2:46954985-46955004 | None:intergenic | 45.0% | |
| !! | GGGAGTACTCCTTAACTTTC+TGG | - | chr5_2:46955157-46955176 | Msa0772630:intron | 45.0% |
| GATTTGGCTAAAGCTGAAGC+TGG | + | chr5_2:46955279-46955298 | None:intergenic | 45.0% | |
| GCAATTCACCATGCTACACT+TGG | + | chr5_2:46956010-46956029 | None:intergenic | 45.0% | |
| GTGGTCATCGTAACGTACAA+TGG | - | chr5_2:46956072-46956091 | Msa0772630:CDS | 45.0% | |
| GGTCATCGTAACGTACAATG+GGG | - | chr5_2:46956074-46956093 | Msa0772630:CDS | 45.0% | |
| GGAAGAGACATATCCTCTGA+AGG | - | chr5_2:46956095-46956114 | Msa0772630:CDS | 45.0% | |
| GTGAAGGTGGCTTAGGTTTG+AGG | + | chr5_2:46954698-46954717 | None:intergenic | 50.0% | |
| TTGGAAACGGTTGGACGTGA+AGG | + | chr5_2:46954714-46954733 | None:intergenic | 50.0% | |
| TTGGGGTTCTTGGAAACGGT+TGG | + | chr5_2:46954723-46954742 | None:intergenic | 50.0% | |
| ! | AACAGGGGATTTGGGGTTCT+TGG | + | chr5_2:46954733-46954752 | None:intergenic | 50.0% |
| !! | CGAGATGGGTTGAGAGAAAC+AGG | + | chr5_2:46954750-46954769 | None:intergenic | 50.0% |
| ACCCATCTCGTCGATCTACA+AGG | - | chr5_2:46954760-46954779 | Msa0772630:intron | 50.0% | |
| ATTGGGACGGAGGGAGTAAT+TGG | + | chr5_2:46954976-46954995 | None:intergenic | 50.0% | |
| GGTCAGATAAATTGGGACGG+AGG | + | chr5_2:46954986-46955005 | None:intergenic | 50.0% | |
| ATGGGTCAGATATTCCGGGA+CGG | - | chr5_2:46955133-46955152 | Msa0772630:intron | 50.0% | |
| GATCCTCGTATTTCCTCGCT+GGG | + | chr5_2:46956032-46956051 | None:intergenic | 50.0% | |
| TCGTGCACGAGATGATCCAA+CGG | - | chr5_2:46956050-46956069 | Msa0772630:CDS | 50.0% | |
| TACGTTACGATGACCACCGT+TGG | + | chr5_2:46956069-46956088 | None:intergenic | 50.0% | |
| GTGAAGGTGGCTTAGGTTTG+AGG | + | chr5_2:46954698-46954717 | None:intergenic | 50.0% | |
| TTGGAAACGGTTGGACGTGA+AGG | + | chr5_2:46954714-46954733 | None:intergenic | 50.0% | |
| TTGGGGTTCTTGGAAACGGT+TGG | + | chr5_2:46954723-46954742 | None:intergenic | 50.0% | |
| ! | AACAGGGGATTTGGGGTTCT+TGG | + | chr5_2:46954733-46954752 | None:intergenic | 50.0% |
| !! | CGAGATGGGTTGAGAGAAAC+AGG | + | chr5_2:46954750-46954769 | None:intergenic | 50.0% |
| ACCCATCTCGTCGATCTACA+AGG | - | chr5_2:46954760-46954779 | Msa0772630:intron | 50.0% | |
| ATTGGGACGGAGGGAGTAAT+TGG | + | chr5_2:46954976-46954995 | None:intergenic | 50.0% | |
| GGTCAGATAAATTGGGACGG+AGG | + | chr5_2:46954986-46955005 | None:intergenic | 50.0% | |
| ATGGGTCAGATATTCCGGGA+CGG | - | chr5_2:46955133-46955152 | Msa0772630:intron | 50.0% | |
| GATCCTCGTATTTCCTCGCT+GGG | + | chr5_2:46956032-46956051 | None:intergenic | 50.0% | |
| TCGTGCACGAGATGATCCAA+CGG | - | chr5_2:46956050-46956069 | Msa0772630:CDS | 50.0% | |
| TACGTTACGATGACCACCGT+TGG | + | chr5_2:46956069-46956088 | None:intergenic | 50.0% | |
| CTACTTCGCTTTCGCAGACG+AGG | + | chr5_2:46954531-46954550 | None:intergenic | 55.0% | |
| GTTGGACGTGAAGGTGGCTT+AGG | + | chr5_2:46954705-46954724 | None:intergenic | 55.0% | |
| GAAACGGTTGGACGTGAAGG+TGG | + | chr5_2:46954711-46954730 | None:intergenic | 55.0% | |
| GTCAGATATTCCGGGACGGA+GGG | - | chr5_2:46955137-46955156 | Msa0772630:intron | 55.0% | |
| TTGCCCAGCGAGGAAATACG+AGG | - | chr5_2:46956026-46956045 | Msa0772630:CDS | 55.0% | |
| CGATCCTCGTATTTCCTCGC+TGG | + | chr5_2:46956033-46956052 | None:intergenic | 55.0% | |
| TGCACGAGATGATCCAACGG+TGG | - | chr5_2:46956053-46956072 | Msa0772630:CDS | 55.0% | |
| CTACTTCGCTTTCGCAGACG+AGG | + | chr5_2:46954531-46954550 | None:intergenic | 55.0% | |
| GTTGGACGTGAAGGTGGCTT+AGG | + | chr5_2:46954705-46954724 | None:intergenic | 55.0% | |
| GAAACGGTTGGACGTGAAGG+TGG | + | chr5_2:46954711-46954730 | None:intergenic | 55.0% | |
| GTCAGATATTCCGGGACGGA+GGG | - | chr5_2:46955137-46955156 | Msa0772630:intron | 55.0% | |
| TTGCCCAGCGAGGAAATACG+AGG | - | chr5_2:46956026-46956045 | Msa0772630:CDS | 55.0% | |
| CGATCCTCGTATTTCCTCGC+TGG | + | chr5_2:46956033-46956052 | None:intergenic | 55.0% | |
| TGCACGAGATGATCCAACGG+TGG | - | chr5_2:46956053-46956072 | Msa0772630:CDS | 55.0% | |
| GGTCAGATATTCCGGGACGG+AGG | - | chr5_2:46955136-46955155 | Msa0772630:intron | 60.0% | |
| !! | AAGGAGTACTCCCTCCGTCC+CGG | + | chr5_2:46955150-46955169 | None:intergenic | 60.0% |
| GCATGGTGAATTGCCCAGCG+AGG | - | chr5_2:46956016-46956035 | Msa0772630:CDS | 60.0% | |
| GGTCAGATATTCCGGGACGG+AGG | - | chr5_2:46955136-46955155 | Msa0772630:intron | 60.0% | |
| !! | AAGGAGTACTCCCTCCGTCC+CGG | + | chr5_2:46955150-46955169 | None:intergenic | 60.0% |
| GCATGGTGAATTGCCCAGCG+AGG | - | chr5_2:46956016-46956035 | Msa0772630:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 46954525 | 46956149 | 46954525 | ID=Msa0772630;Name=Msa0772630 |
| chr5_2 | mRNA | 46954525 | 46956149 | 46954525 | ID=Msa0772630-mRNA-1;Parent=Msa0772630;Name=Msa0772630-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.5|0|1|1|1|3|0|180 |
| chr5_2 | exon | 46955925 | 46956149 | 46955925 | ID=Msa0772630-mRNA-1:exon:14068;Parent=Msa0772630-mRNA-1 |
| chr5_2 | exon | 46955726 | 46955892 | 46955726 | ID=Msa0772630-mRNA-1:exon:14067;Parent=Msa0772630-mRNA-1 |
| chr5_2 | exon | 46954525 | 46954675 | 46954525 | ID=Msa0772630-mRNA-1:exon:14066;Parent=Msa0772630-mRNA-1 |
| chr5_2 | CDS | 46955925 | 46956149 | 46955925 | ID=Msa0772630-mRNA-1:cds;Parent=Msa0772630-mRNA-1 |
| chr5_2 | CDS | 46955726 | 46955892 | 46955726 | ID=Msa0772630-mRNA-1:cds;Parent=Msa0772630-mRNA-1 |
| chr5_2 | CDS | 46954525 | 46954675 | 46954525 | ID=Msa0772630-mRNA-1:cds;Parent=Msa0772630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
