Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772850 | XP_024636500.1 | 97.115 | 208 | 6 | 0 | 3 | 210 | 31 | 238 | 2.45e-150 | 427 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772850 | sp|Q8VWG3|TT1_ARATH | 66.010 | 203 | 54 | 2 | 18 | 205 | 83 | 285 | 2.65e-95 | 283 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772850 | A0A396IBK2 | 97.115 | 208 | 6 | 0 | 3 | 210 | 25 | 232 | 1.31e-150 | 426 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0772850 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772850 | MtrunA17_Chr4g0053341 | 97.115 | 208 | 6 | 0 | 3 | 210 | 25 | 232 | 2.53e-154 | 426 |
| Msa0772850 | MtrunA17_Chr8g0352011 | 68.750 | 208 | 45 | 3 | 16 | 203 | 110 | 317 | 4.30e-99 | 291 |
| Msa0772850 | MtrunA17_Chr1g0173841 | 63.636 | 220 | 48 | 3 | 16 | 203 | 147 | 366 | 2.42e-94 | 280 |
| Msa0772850 | MtrunA17_Chr5g0422571 | 65.672 | 201 | 61 | 3 | 13 | 207 | 59 | 257 | 3.57e-94 | 276 |
| Msa0772850 | MtrunA17_Chr2g0321291 | 60.360 | 222 | 71 | 2 | 4 | 208 | 68 | 289 | 5.50e-93 | 274 |
| Msa0772850 | MtrunA17_Chr7g0258011 | 63.810 | 210 | 52 | 1 | 18 | 203 | 118 | 327 | 7.50e-93 | 275 |
| Msa0772850 | MtrunA17_Chr2g0328921 | 66.337 | 202 | 54 | 3 | 16 | 203 | 88 | 289 | 1.01e-91 | 271 |
| Msa0772850 | MtrunA17_Chr4g0026521 | 62.944 | 197 | 63 | 1 | 19 | 205 | 75 | 271 | 2.01e-88 | 262 |
| Msa0772850 | MtrunA17_Chr1g0198651 | 67.816 | 174 | 51 | 2 | 39 | 207 | 87 | 260 | 2.84e-85 | 254 |
| Msa0772850 | MtrunA17_Chr1g0200421 | 37.615 | 218 | 109 | 9 | 3 | 202 | 184 | 392 | 1.47e-30 | 117 |
| Msa0772850 | MtrunA17_Chr2g0320341 | 37.255 | 153 | 87 | 5 | 58 | 203 | 238 | 388 | 1.71e-24 | 99.4 |
| Msa0772850 | MtrunA17_Chr8g0382121 | 38.411 | 151 | 85 | 6 | 57 | 202 | 118 | 265 | 5.26e-21 | 88.6 |
| Msa0772850 | MtrunA17_Chr1g0181381 | 33.113 | 151 | 92 | 4 | 47 | 196 | 49 | 191 | 2.14e-20 | 88.6 |
| Msa0772850 | MtrunA17_Chr4g0029521 | 34.211 | 152 | 89 | 5 | 47 | 196 | 49 | 191 | 4.68e-20 | 87.4 |
| Msa0772850 | MtrunA17_Chr2g0324991 | 36.054 | 147 | 84 | 5 | 47 | 191 | 3 | 141 | 8.45e-20 | 82.0 |
| Msa0772850 | MtrunA17_Chr7g0263941 | 35.099 | 151 | 88 | 5 | 47 | 196 | 45 | 186 | 9.80e-20 | 86.3 |
| Msa0772850 | MtrunA17_Chr2g0326381 | 34.868 | 152 | 88 | 5 | 47 | 196 | 43 | 185 | 1.12e-19 | 86.3 |
| Msa0772850 | MtrunA17_Chr1g0185121 | 34.194 | 155 | 91 | 5 | 44 | 196 | 48 | 193 | 1.60e-19 | 85.9 |
| Msa0772850 | MtrunA17_Chr1g0210821 | 33.775 | 151 | 90 | 4 | 47 | 196 | 55 | 196 | 2.41e-19 | 85.5 |
| Msa0772850 | MtrunA17_Chr1g0162971 | 34.437 | 151 | 89 | 4 | 47 | 196 | 52 | 193 | 3.29e-19 | 85.1 |
| Msa0772850 | MtrunA17_Chr1g0163001 | 33.775 | 151 | 90 | 4 | 47 | 196 | 54 | 195 | 4.59e-19 | 84.7 |
| Msa0772850 | MtrunA17_Chr1g0199101 | 35.099 | 151 | 88 | 5 | 47 | 196 | 58 | 199 | 4.94e-19 | 84.7 |
| Msa0772850 | MtrunA17_Chr8g0342421 | 32.911 | 158 | 95 | 5 | 41 | 196 | 66 | 214 | 7.42e-19 | 84.0 |
| Msa0772850 | MtrunA17_Chr1g0151351 | 32.895 | 152 | 91 | 5 | 47 | 196 | 52 | 194 | 1.38e-18 | 83.2 |
| Msa0772850 | MtrunA17_Chr4g0040571 | 33.544 | 158 | 94 | 5 | 41 | 196 | 43 | 191 | 1.62e-18 | 83.2 |
| Msa0772850 | MtrunA17_Chr8g0373541 | 33.113 | 151 | 91 | 4 | 47 | 196 | 44 | 185 | 2.51e-18 | 82.4 |
| Msa0772850 | MtrunA17_Chr1g0191991 | 33.544 | 158 | 94 | 5 | 41 | 196 | 67 | 215 | 4.97e-18 | 81.6 |
| Msa0772850 | MtrunA17_Chr2g0330171 | 32.911 | 158 | 95 | 5 | 41 | 196 | 50 | 198 | 5.46e-18 | 81.6 |
| Msa0772850 | MtrunA17_Chr7g0268961 | 32.895 | 152 | 84 | 6 | 53 | 196 | 33 | 174 | 1.26e-17 | 80.5 |
| Msa0772850 | MtrunA17_Chr3g0123941 | 36.000 | 150 | 87 | 7 | 57 | 202 | 130 | 274 | 9.38e-17 | 77.4 |
| Msa0772850 | MtrunA17_Chr3g0141431 | 31.081 | 148 | 92 | 4 | 47 | 192 | 33 | 172 | 8.68e-16 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772850 | AT1G34790.1 | 66.010 | 203 | 54 | 2 | 18 | 205 | 83 | 285 | 2.69e-96 | 283 |
| Msa0772850 | AT3G57670.1 | 69.832 | 179 | 54 | 0 | 25 | 203 | 177 | 355 | 3.25e-91 | 272 |
| Msa0772850 | AT1G51220.1 | 76.250 | 160 | 38 | 0 | 50 | 209 | 163 | 322 | 2.10e-90 | 269 |
| Msa0772850 | AT3G20880.1 | 58.636 | 220 | 56 | 2 | 17 | 202 | 175 | 393 | 3.57e-89 | 268 |
| Msa0772850 | AT1G13290.1 | 65.128 | 195 | 58 | 4 | 18 | 206 | 54 | 244 | 2.26e-87 | 260 |
| Msa0772850 | AT1G08290.1 | 74.675 | 154 | 38 | 1 | 50 | 202 | 165 | 318 | 5.40e-85 | 255 |
| Msa0772850 | AT1G34370.3 | 41.667 | 168 | 87 | 6 | 44 | 202 | 12 | 177 | 1.73e-30 | 114 |
| Msa0772850 | AT1G34370.2 | 37.500 | 200 | 114 | 6 | 12 | 202 | 190 | 387 | 8.69e-30 | 115 |
| Msa0772850 | AT1G34370.1 | 37.500 | 200 | 114 | 6 | 12 | 202 | 190 | 387 | 8.69e-30 | 115 |
| Msa0772850 | AT5G22890.1 | 37.580 | 157 | 89 | 5 | 58 | 207 | 211 | 365 | 4.66e-24 | 98.2 |
| Msa0772850 | AT5G03150.1 | 34.437 | 151 | 90 | 4 | 47 | 196 | 64 | 206 | 7.32e-21 | 90.1 |
| Msa0772850 | AT5G44160.1 | 34.810 | 158 | 92 | 5 | 41 | 196 | 41 | 189 | 9.11e-20 | 87.0 |
| Msa0772850 | AT5G44160.2 | 34.437 | 151 | 89 | 4 | 47 | 196 | 9 | 150 | 1.49e-19 | 86.3 |
| Msa0772850 | AT2G02080.1 | 33.333 | 183 | 103 | 6 | 19 | 196 | 38 | 206 | 1.52e-19 | 86.7 |
| Msa0772850 | AT2G02080.4 | 33.333 | 183 | 103 | 6 | 19 | 196 | 38 | 206 | 1.52e-19 | 86.7 |
| Msa0772850 | AT2G02080.5 | 33.333 | 183 | 103 | 6 | 19 | 196 | 38 | 206 | 1.52e-19 | 86.7 |
| Msa0772850 | AT2G02080.3 | 33.333 | 183 | 103 | 6 | 19 | 196 | 38 | 206 | 1.52e-19 | 86.7 |
| Msa0772850 | AT5G60470.3 | 35.484 | 155 | 89 | 5 | 41 | 192 | 44 | 190 | 1.83e-19 | 86.3 |
| Msa0772850 | AT5G60470.2 | 35.484 | 155 | 89 | 5 | 41 | 192 | 48 | 194 | 1.92e-19 | 85.9 |
| Msa0772850 | AT1G14580.3 | 32.258 | 186 | 115 | 5 | 12 | 196 | 44 | 219 | 2.24e-19 | 85.9 |
| Msa0772850 | AT1G14580.1 | 32.258 | 186 | 115 | 5 | 12 | 196 | 30 | 205 | 2.25e-19 | 85.9 |
| Msa0772850 | AT1G14580.2 | 32.258 | 186 | 115 | 5 | 12 | 196 | 30 | 205 | 2.25e-19 | 85.9 |
| Msa0772850 | AT5G60470.1 | 35.135 | 148 | 86 | 4 | 47 | 192 | 46 | 185 | 2.75e-19 | 85.5 |
| Msa0772850 | AT1G55110.3 | 33.548 | 155 | 92 | 5 | 44 | 196 | 71 | 216 | 5.11e-19 | 84.7 |
| Msa0772850 | AT1G55110.1 | 33.548 | 155 | 92 | 5 | 44 | 196 | 71 | 216 | 5.11e-19 | 84.7 |
| Msa0772850 | AT1G55110.2 | 33.548 | 155 | 92 | 5 | 44 | 196 | 71 | 216 | 5.11e-19 | 84.7 |
| Msa0772850 | AT2G02070.2 | 34.932 | 146 | 85 | 4 | 52 | 196 | 68 | 204 | 5.63e-19 | 85.1 |
| Msa0772850 | AT2G02070.1 | 34.932 | 146 | 85 | 4 | 52 | 196 | 68 | 204 | 5.63e-19 | 85.1 |
| Msa0772850 | AT1G03840.1 | 33.544 | 158 | 94 | 5 | 41 | 196 | 45 | 193 | 6.54e-19 | 84.7 |
| Msa0772850 | AT5G66730.1 | 33.553 | 152 | 89 | 5 | 47 | 196 | 43 | 184 | 7.63e-19 | 84.3 |
| Msa0772850 | AT3G45260.2 | 35.443 | 158 | 92 | 5 | 41 | 196 | 43 | 192 | 8.56e-19 | 84.0 |
| Msa0772850 | AT3G45260.1 | 35.443 | 158 | 92 | 5 | 41 | 196 | 43 | 192 | 8.56e-19 | 84.0 |
| Msa0772850 | AT1G03840.2 | 33.121 | 157 | 94 | 5 | 41 | 196 | 45 | 191 | 9.31e-19 | 84.3 |
| Msa0772850 | AT2G02080.6 | 36.842 | 133 | 74 | 4 | 65 | 196 | 6 | 129 | 3.96e-18 | 82.0 |
| Msa0772850 | AT2G02080.2 | 36.842 | 133 | 74 | 4 | 65 | 196 | 6 | 129 | 3.96e-18 | 82.0 |
| Msa0772850 | AT3G50700.1 | 31.319 | 182 | 110 | 7 | 20 | 196 | 15 | 186 | 1.11e-17 | 80.9 |
| Msa0772850 | AT4G02670.1 | 33.117 | 154 | 94 | 4 | 44 | 196 | 61 | 206 | 1.13e-17 | 80.9 |
| Msa0772850 | AT4G02670.2 | 33.117 | 154 | 94 | 4 | 44 | 196 | 63 | 208 | 1.36e-17 | 80.5 |
| Msa0772850 | AT3G13810.5 | 31.818 | 154 | 96 | 4 | 44 | 196 | 73 | 218 | 2.56e-17 | 80.1 |
| Msa0772850 | AT3G13810.6 | 31.818 | 154 | 96 | 4 | 44 | 196 | 59 | 204 | 2.74e-17 | 80.1 |
| Msa0772850 | AT3G13810.4 | 31.818 | 154 | 96 | 4 | 44 | 196 | 78 | 223 | 2.86e-17 | 80.1 |
| Msa0772850 | AT3G13810.1 | 31.818 | 154 | 96 | 4 | 44 | 196 | 78 | 223 | 2.86e-17 | 80.1 |
| Msa0772850 | AT3G13810.3 | 31.788 | 151 | 94 | 4 | 47 | 196 | 68 | 210 | 4.10e-17 | 79.3 |
| Msa0772850 | AT3G13810.2 | 31.788 | 151 | 94 | 4 | 47 | 196 | 82 | 224 | 4.80e-17 | 79.3 |
Find 44 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAAGCCATTGAAGGATTTC+AGG | 0.257197 | 5_2:+47267340 | Msa0772850:CDS |
| CCACCAGATGAAGAAGAAAA+AGG | 0.280585 | 5_2:-47267564 | None:intergenic |
| ATCAAGTTCCTAACAATTAC+TGG | 0.290004 | 5_2:+47266588 | Msa0772850:CDS |
| CATATCAAAGCATTTGGATT+TGG | 0.298690 | 5_2:+47267534 | Msa0772850:CDS |
| AGTGAATCACCAAATCAAAA+TGG | 0.332679 | 5_2:+47266548 | Msa0772850:CDS |
| AAGGATCATATCAAAGCATT+TGG | 0.345398 | 5_2:+47267528 | Msa0772850:CDS |
| GGTGATTCACTTGAATTGTT+AGG | 0.354362 | 5_2:-47266536 | None:intergenic |
| CAAACATAAGAGGTCACTTA+AGG | 0.365934 | 5_2:+47267509 | Msa0772850:CDS |
| GTTGGTATCCAGTAATTGTT+AGG | 0.378277 | 5_2:-47266596 | None:intergenic |
| TCCTTCAATGGCTTAGCTCT+TGG | 0.384210 | 5_2:-47267333 | None:intergenic |
| CAATCGTTACAACAACCTTC+AGG | 0.392156 | 5_2:+47266679 | Msa0772850:CDS |
| TAATTGTTAGGAACTTGATT+TGG | 0.405327 | 5_2:-47266584 | None:intergenic |
| GTTAGGAAGGCCTATTTGTA+AGG | 0.411385 | 5_2:-47266519 | None:intergenic |
| GTCACAGTGGCCTTACAAAT+AGG | 0.422585 | 5_2:+47266509 | Msa0772850:CDS |
| CCATGCTATTGTTGTTCAAA+GGG | 0.430924 | 5_2:+47267288 | Msa0772850:CDS |
| ACTCAGGAACAGATTCTCAT+TGG | 0.435131 | 5_2:+47266617 | Msa0772850:CDS |
| ACCATGCTATTGTTGTTCAA+AGG | 0.475949 | 5_2:+47267287 | Msa0772850:CDS |
| TCGAAAATGTGGGAAGCCAT+TGG | 0.482738 | 5_2:+47267413 | Msa0772850:CDS |
| CAATCACCTTTCACTGCCAA+TGG | 0.484406 | 5_2:-47267429 | None:intergenic |
| GATCAGATTTCAAACATAAG+AGG | 0.488224 | 5_2:+47267499 | Msa0772850:CDS |
| GGTCTAACAATGGTCGTGGA+TGG | 0.504798 | 5_2:-47267263 | None:intergenic |
| CATTGGCAGTGAAAGGTGAT+TGG | 0.508045 | 5_2:+47267430 | Msa0772850:CDS |
| TCCAAGAGCTAAGCCATTGA+AGG | 0.510873 | 5_2:+47267332 | Msa0772850:CDS |
| ATGAGAATCTGTTCCTGAGT+TGG | 0.522747 | 5_2:-47266614 | None:intergenic |
| ACGTTTACTTGTCGAAAATG+TGG | 0.532025 | 5_2:+47267402 | Msa0772850:CDS |
| AGTGTCCTGAAATCCTTCAA+TGG | 0.536755 | 5_2:-47267345 | None:intergenic |
| GTCTAACAATGGTCGTGGAT+GGG | 0.548133 | 5_2:-47267262 | None:intergenic |
| GGTAGGTCTAACAATGGTCG+TGG | 0.562164 | 5_2:-47267267 | None:intergenic |
| ATTCACTTGAATTGTTAGGA+AGG | 0.564830 | 5_2:-47266532 | None:intergenic |
| CGTTTACTTGTCGAAAATGT+GGG | 0.576502 | 5_2:+47267403 | Msa0772850:CDS |
| TTGAACAACAATAGCATGGT+AGG | 0.577831 | 5_2:-47267284 | None:intergenic |
| TTTGGTGATAGATGCATATG+TGG | 0.589947 | 5_2:+47267193 | Msa0772850:intron |
| CAATTACTGGATACCAACTC+AGG | 0.612200 | 5_2:+47266601 | Msa0772850:CDS |
| ACACACTACAAGAGAAAGCA+TGG | 0.621285 | 5_2:+47267372 | Msa0772850:CDS |
| CCCTTTGAACAACAATAGCA+TGG | 0.627956 | 5_2:-47267288 | None:intergenic |
| TTGGTGATAGATGCATATGT+GGG | 0.631361 | 5_2:+47267194 | Msa0772850:intron |
| AAGCGTTGGCTTTGTATCTG+TGG | 0.634099 | 5_2:+47267477 | Msa0772850:CDS |
| GGGAAGCCATTGGCAGTGAA+AGG | 0.634540 | 5_2:+47267423 | Msa0772850:CDS |
| ATCATGTTTCAATCAAGCTG+AGG | 0.648432 | 5_2:+47266484 | Msa0772850:CDS |
| CATGGTTCACAGTATCGAAG+AGG | 0.674513 | 5_2:+47267219 | Msa0772850:CDS |
| TAGCATGGTAGGTCTAACAA+TGG | 0.702153 | 5_2:-47267273 | None:intergenic |
| TGGTGATAGATGCATATGTG+GGG | 0.723679 | 5_2:+47267195 | Msa0772850:intron |
| TCAAGCTGAGGATGTCACAG+TGG | 0.732110 | 5_2:+47266496 | Msa0772850:CDS |
| GGTGATAGATGCATATGTGG+GGG | 0.769392 | 5_2:+47267196 | Msa0772850:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTACAAATCCATTTTGATT+TGG | - | chr5_2:47266560-47266579 | None:intergenic | 20.0% |
| !! | TAATCTCTCCAATAAAAAAA+AGG | + | chr5_2:47266809-47266828 | Msa0772850:intron | 20.0% |
| !!! | AGCATTTACCTTTTTTTTAT+TGG | - | chr5_2:47266820-47266839 | None:intergenic | 20.0% |
| !!! | TAAAATATTGATTGCCATAA+GGG | - | chr5_2:47267079-47267098 | None:intergenic | 20.0% |
| !!! | TTAAAATATTGATTGCCATA+AGG | - | chr5_2:47267080-47267099 | None:intergenic | 20.0% |
| !! | CCAAATTGAAAATATAATCA+GGG | - | chr5_2:47267178-47267197 | None:intergenic | 20.0% |
| !! | ACCAAATTGAAAATATAATC+AGG | - | chr5_2:47267179-47267198 | None:intergenic | 20.0% |
| !!! | TTTACAAATCCATTTTGATT+TGG | - | chr5_2:47266560-47266579 | None:intergenic | 20.0% |
| !! | TAATCTCTCCAATAAAAAAA+AGG | + | chr5_2:47266809-47266828 | Msa0772850:intron | 20.0% |
| !!! | AGCATTTACCTTTTTTTTAT+TGG | - | chr5_2:47266820-47266839 | None:intergenic | 20.0% |
| !!! | TAAAATATTGATTGCCATAA+GGG | - | chr5_2:47267079-47267098 | None:intergenic | 20.0% |
| !!! | TTAAAATATTGATTGCCATA+AGG | - | chr5_2:47267080-47267099 | None:intergenic | 20.0% |
| !! | CCAAATTGAAAATATAATCA+GGG | - | chr5_2:47267178-47267197 | None:intergenic | 20.0% |
| !! | ACCAAATTGAAAATATAATC+AGG | - | chr5_2:47267179-47267198 | None:intergenic | 20.0% |
| !! | GATTTATGACTTTCATTTTG+TGG | - | chr5_2:47266467-47266486 | None:intergenic | 25.0% |
| ! | TAATTGTTAGGAACTTGATT+TGG | - | chr5_2:47266587-47266606 | None:intergenic | 25.0% |
| ! | AAACTTTAATTGAAGTTCCT+AGG | + | chr5_2:47266934-47266953 | Msa0772850:intron | 25.0% |
| ! | AACTTTAATTGAAGTTCCTA+GGG | + | chr5_2:47266935-47266954 | Msa0772850:intron | 25.0% |
| ! | AGTGATTCTCTATAATATCA+AGG | + | chr5_2:47267035-47267054 | Msa0772850:intron | 25.0% |
| !!! | GCAATCAATATTTTAAACCT+TGG | + | chr5_2:47267084-47267103 | Msa0772850:intron | 25.0% |
| !! | CCCTGATTATATTTTCAATT+TGG | + | chr5_2:47267175-47267194 | Msa0772850:intron | 25.0% |
| !! | GATTTATGACTTTCATTTTG+TGG | - | chr5_2:47266467-47266486 | None:intergenic | 25.0% |
| ! | TAATTGTTAGGAACTTGATT+TGG | - | chr5_2:47266587-47266606 | None:intergenic | 25.0% |
| ! | AAACTTTAATTGAAGTTCCT+AGG | + | chr5_2:47266934-47266953 | Msa0772850:intron | 25.0% |
| ! | AACTTTAATTGAAGTTCCTA+GGG | + | chr5_2:47266935-47266954 | Msa0772850:intron | 25.0% |
| ! | AGTGATTCTCTATAATATCA+AGG | + | chr5_2:47267035-47267054 | Msa0772850:intron | 25.0% |
| !!! | GCAATCAATATTTTAAACCT+TGG | + | chr5_2:47267084-47267103 | Msa0772850:intron | 25.0% |
| !! | CCCTGATTATATTTTCAATT+TGG | + | chr5_2:47267175-47267194 | Msa0772850:intron | 25.0% |
| ATTCACTTGAATTGTTAGGA+AGG | - | chr5_2:47266535-47266554 | None:intergenic | 30.0% | |
| AGTGAATCACCAAATCAAAA+TGG | + | chr5_2:47266548-47266567 | Msa0772850:CDS | 30.0% | |
| ATCAAGTTCCTAACAATTAC+TGG | + | chr5_2:47266588-47266607 | Msa0772850:CDS | 30.0% | |
| ! | TGTAACGATTGAAAGTTTTG+AGG | - | chr5_2:47266670-47266689 | None:intergenic | 30.0% |
| AAGAAAATTACTACACCTGA+AGG | - | chr5_2:47266697-47266716 | None:intergenic | 30.0% | |
| TAATTTATTTGCGACTACCA+AGG | - | chr5_2:47267104-47267123 | None:intergenic | 30.0% | |
| AAACCTAGATTTCTGATCTT+AGG | + | chr5_2:47267139-47267158 | Msa0772850:intron | 30.0% | |
| AATCCTAAGATCAGAAATCT+AGG | - | chr5_2:47267145-47267164 | None:intergenic | 30.0% | |
| GATCAGATTTCAAACATAAG+AGG | + | chr5_2:47267499-47267518 | Msa0772850:CDS | 30.0% | |
| ! | AAGGATCATATCAAAGCATT+TGG | + | chr5_2:47267528-47267547 | Msa0772850:CDS | 30.0% |
| ! | CATATCAAAGCATTTGGATT+TGG | + | chr5_2:47267534-47267553 | Msa0772850:CDS | 30.0% |
| ATTCACTTGAATTGTTAGGA+AGG | - | chr5_2:47266535-47266554 | None:intergenic | 30.0% | |
| AGTGAATCACCAAATCAAAA+TGG | + | chr5_2:47266548-47266567 | Msa0772850:CDS | 30.0% | |
| ATCAAGTTCCTAACAATTAC+TGG | + | chr5_2:47266588-47266607 | Msa0772850:CDS | 30.0% | |
| ! | TGTAACGATTGAAAGTTTTG+AGG | - | chr5_2:47266670-47266689 | None:intergenic | 30.0% |
| AAGAAAATTACTACACCTGA+AGG | - | chr5_2:47266697-47266716 | None:intergenic | 30.0% | |
| TAATTTATTTGCGACTACCA+AGG | - | chr5_2:47267104-47267123 | None:intergenic | 30.0% | |
| AAACCTAGATTTCTGATCTT+AGG | + | chr5_2:47267139-47267158 | Msa0772850:intron | 30.0% | |
| AATCCTAAGATCAGAAATCT+AGG | - | chr5_2:47267145-47267164 | None:intergenic | 30.0% | |
| GATCAGATTTCAAACATAAG+AGG | + | chr5_2:47267499-47267518 | Msa0772850:CDS | 30.0% | |
| ! | AAGGATCATATCAAAGCATT+TGG | + | chr5_2:47267528-47267547 | Msa0772850:CDS | 30.0% |
| ! | CATATCAAAGCATTTGGATT+TGG | + | chr5_2:47267534-47267553 | Msa0772850:CDS | 30.0% |
| ATCATGTTTCAATCAAGCTG+AGG | + | chr5_2:47266484-47266503 | Msa0772850:CDS | 35.0% | |
| GGTGATTCACTTGAATTGTT+AGG | - | chr5_2:47266539-47266558 | None:intergenic | 35.0% | |
| GTTGGTATCCAGTAATTGTT+AGG | - | chr5_2:47266599-47266618 | None:intergenic | 35.0% | |
| CATACAATCCTTGTCAAATC+TGG | + | chr5_2:47266905-47266924 | Msa0772850:intron | 35.0% | |
| TTCATTGACCAGATTTGACA+AGG | - | chr5_2:47266916-47266935 | None:intergenic | 35.0% | |
| ! | ATTGAAGTTCCTAGGGTTTT+AGG | + | chr5_2:47266942-47266961 | Msa0772850:intron | 35.0% |
| ! | TTTGGTGATAGATGCATATG+TGG | + | chr5_2:47267193-47267212 | Msa0772850:intron | 35.0% |
| ! | TTGGTGATAGATGCATATGT+GGG | + | chr5_2:47267194-47267213 | Msa0772850:intron | 35.0% |
| TTGAACAACAATAGCATGGT+AGG | - | chr5_2:47267287-47267306 | None:intergenic | 35.0% | |
| ! | ACCATGCTATTGTTGTTCAA+AGG | + | chr5_2:47267287-47267306 | Msa0772850:CDS | 35.0% |
| ! | CCATGCTATTGTTGTTCAAA+GGG | + | chr5_2:47267288-47267307 | Msa0772850:CDS | 35.0% |
| ACGTTTACTTGTCGAAAATG+TGG | + | chr5_2:47267402-47267421 | Msa0772850:CDS | 35.0% | |
| CGTTTACTTGTCGAAAATGT+GGG | + | chr5_2:47267403-47267422 | Msa0772850:CDS | 35.0% | |
| AGAACTCATGAGAAAAACTG+TGG | + | chr5_2:47267453-47267472 | Msa0772850:CDS | 35.0% | |
| CAAACATAAGAGGTCACTTA+AGG | + | chr5_2:47267509-47267528 | Msa0772850:CDS | 35.0% | |
| CACCAGATGAAGAAGAAAAA+GGG | - | chr5_2:47267566-47267585 | None:intergenic | 35.0% | |
| ! | CTTTTTCTTCTTCATCTGGT+GGG | + | chr5_2:47267565-47267584 | Msa0772850:CDS | 35.0% |
| ATCATGTTTCAATCAAGCTG+AGG | + | chr5_2:47266484-47266503 | Msa0772850:CDS | 35.0% | |
| GGTGATTCACTTGAATTGTT+AGG | - | chr5_2:47266539-47266558 | None:intergenic | 35.0% | |
| GTTGGTATCCAGTAATTGTT+AGG | - | chr5_2:47266599-47266618 | None:intergenic | 35.0% | |
| CATACAATCCTTGTCAAATC+TGG | + | chr5_2:47266905-47266924 | Msa0772850:intron | 35.0% | |
| TTCATTGACCAGATTTGACA+AGG | - | chr5_2:47266916-47266935 | None:intergenic | 35.0% | |
| ! | ATTGAAGTTCCTAGGGTTTT+AGG | + | chr5_2:47266942-47266961 | Msa0772850:intron | 35.0% |
| ! | TTTGGTGATAGATGCATATG+TGG | + | chr5_2:47267193-47267212 | Msa0772850:intron | 35.0% |
| ! | TTGGTGATAGATGCATATGT+GGG | + | chr5_2:47267194-47267213 | Msa0772850:intron | 35.0% |
| TTGAACAACAATAGCATGGT+AGG | - | chr5_2:47267287-47267306 | None:intergenic | 35.0% | |
| ! | ACCATGCTATTGTTGTTCAA+AGG | + | chr5_2:47267287-47267306 | Msa0772850:CDS | 35.0% |
| ! | CCATGCTATTGTTGTTCAAA+GGG | + | chr5_2:47267288-47267307 | Msa0772850:CDS | 35.0% |
| ACGTTTACTTGTCGAAAATG+TGG | + | chr5_2:47267402-47267421 | Msa0772850:CDS | 35.0% | |
| CGTTTACTTGTCGAAAATGT+GGG | + | chr5_2:47267403-47267422 | Msa0772850:CDS | 35.0% | |
| AGAACTCATGAGAAAAACTG+TGG | + | chr5_2:47267453-47267472 | Msa0772850:CDS | 35.0% | |
| CAAACATAAGAGGTCACTTA+AGG | + | chr5_2:47267509-47267528 | Msa0772850:CDS | 35.0% | |
| CACCAGATGAAGAAGAAAAA+GGG | - | chr5_2:47267566-47267585 | None:intergenic | 35.0% | |
| ! | CTTTTTCTTCTTCATCTGGT+GGG | + | chr5_2:47267565-47267584 | Msa0772850:CDS | 35.0% |
| GTTAGGAAGGCCTATTTGTA+AGG | - | chr5_2:47266522-47266541 | None:intergenic | 40.0% | |
| CAATTACTGGATACCAACTC+AGG | + | chr5_2:47266601-47266620 | Msa0772850:CDS | 40.0% | |
| ATGAGAATCTGTTCCTGAGT+TGG | - | chr5_2:47266617-47266636 | None:intergenic | 40.0% | |
| ACTCAGGAACAGATTCTCAT+TGG | + | chr5_2:47266617-47266636 | Msa0772850:CDS | 40.0% | |
| !!! | TGAAAGTTTTGAGGCAGACT+GGG | - | chr5_2:47266661-47266680 | None:intergenic | 40.0% |
| !!! | TTGAAAGTTTTGAGGCAGAC+TGG | - | chr5_2:47266662-47266681 | None:intergenic | 40.0% |
| CAATCGTTACAACAACCTTC+AGG | + | chr5_2:47266679-47266698 | Msa0772850:CDS | 40.0% | |
| CTGTTATGTCCTAAAACCCT+AGG | - | chr5_2:47266954-47266973 | None:intergenic | 40.0% | |
| TGGTGATAGATGCATATGTG+GGG | + | chr5_2:47267195-47267214 | Msa0772850:intron | 40.0% | |
| TAGCATGGTAGGTCTAACAA+TGG | - | chr5_2:47267276-47267295 | None:intergenic | 40.0% | |
| CCCTTTGAACAACAATAGCA+TGG | - | chr5_2:47267291-47267310 | None:intergenic | 40.0% | |
| CTAAGCCATTGAAGGATTTC+AGG | + | chr5_2:47267340-47267359 | Msa0772850:CDS | 40.0% | |
| AGTGTCCTGAAATCCTTCAA+TGG | - | chr5_2:47267348-47267367 | None:intergenic | 40.0% | |
| ACACACTACAAGAGAAAGCA+TGG | + | chr5_2:47267372-47267391 | Msa0772850:CDS | 40.0% | |
| ! | AGCCCTTTTTCTTCTTCATC+TGG | + | chr5_2:47267561-47267580 | Msa0772850:CDS | 40.0% |
| CCACCAGATGAAGAAGAAAA+AGG | - | chr5_2:47267567-47267586 | None:intergenic | 40.0% | |
| ! | CCTTTTTCTTCTTCATCTGG+TGG | + | chr5_2:47267564-47267583 | Msa0772850:CDS | 40.0% |
| GTTAGGAAGGCCTATTTGTA+AGG | - | chr5_2:47266522-47266541 | None:intergenic | 40.0% | |
| CAATTACTGGATACCAACTC+AGG | + | chr5_2:47266601-47266620 | Msa0772850:CDS | 40.0% | |
| ATGAGAATCTGTTCCTGAGT+TGG | - | chr5_2:47266617-47266636 | None:intergenic | 40.0% | |
| ACTCAGGAACAGATTCTCAT+TGG | + | chr5_2:47266617-47266636 | Msa0772850:CDS | 40.0% | |
| !!! | TGAAAGTTTTGAGGCAGACT+GGG | - | chr5_2:47266661-47266680 | None:intergenic | 40.0% |
| !!! | TTGAAAGTTTTGAGGCAGAC+TGG | - | chr5_2:47266662-47266681 | None:intergenic | 40.0% |
| CAATCGTTACAACAACCTTC+AGG | + | chr5_2:47266679-47266698 | Msa0772850:CDS | 40.0% | |
| CTGTTATGTCCTAAAACCCT+AGG | - | chr5_2:47266954-47266973 | None:intergenic | 40.0% | |
| TGGTGATAGATGCATATGTG+GGG | + | chr5_2:47267195-47267214 | Msa0772850:intron | 40.0% | |
| TAGCATGGTAGGTCTAACAA+TGG | - | chr5_2:47267276-47267295 | None:intergenic | 40.0% | |
| CCCTTTGAACAACAATAGCA+TGG | - | chr5_2:47267291-47267310 | None:intergenic | 40.0% | |
| CTAAGCCATTGAAGGATTTC+AGG | + | chr5_2:47267340-47267359 | Msa0772850:CDS | 40.0% | |
| AGTGTCCTGAAATCCTTCAA+TGG | - | chr5_2:47267348-47267367 | None:intergenic | 40.0% | |
| ACACACTACAAGAGAAAGCA+TGG | + | chr5_2:47267372-47267391 | Msa0772850:CDS | 40.0% | |
| ! | AGCCCTTTTTCTTCTTCATC+TGG | + | chr5_2:47267561-47267580 | Msa0772850:CDS | 40.0% |
| CCACCAGATGAAGAAGAAAA+AGG | - | chr5_2:47267567-47267586 | None:intergenic | 40.0% | |
| ! | CCTTTTTCTTCTTCATCTGG+TGG | + | chr5_2:47267564-47267583 | Msa0772850:CDS | 40.0% |
| ! | GTCACAGTGGCCTTACAAAT+AGG | + | chr5_2:47266509-47266528 | Msa0772850:CDS | 45.0% |
| GAACGCAATCGAGGTTTCAT+CGG | + | chr5_2:47267001-47267020 | Msa0772850:intron | 45.0% | |
| ATTGATTGCCATAAGGGTCG+TGG | - | chr5_2:47267073-47267092 | None:intergenic | 45.0% | |
| GGTGATAGATGCATATGTGG+GGG | + | chr5_2:47267196-47267215 | Msa0772850:intron | 45.0% | |
| ! | CATGGTTCACAGTATCGAAG+AGG | + | chr5_2:47267219-47267238 | Msa0772850:CDS | 45.0% |
| !! | TGGGTTCTTTTTAGCGAGTC+TGG | - | chr5_2:47267246-47267265 | None:intergenic | 45.0% |
| GTCTAACAATGGTCGTGGAT+GGG | - | chr5_2:47267265-47267284 | None:intergenic | 45.0% | |
| TCCAAGAGCTAAGCCATTGA+AGG | + | chr5_2:47267332-47267351 | Msa0772850:CDS | 45.0% | |
| ! | TCCTTCAATGGCTTAGCTCT+TGG | - | chr5_2:47267336-47267355 | None:intergenic | 45.0% |
| TCGAAAATGTGGGAAGCCAT+TGG | + | chr5_2:47267413-47267432 | Msa0772850:CDS | 45.0% | |
| CAATCACCTTTCACTGCCAA+TGG | - | chr5_2:47267432-47267451 | None:intergenic | 45.0% | |
| CATTGGCAGTGAAAGGTGAT+TGG | + | chr5_2:47267430-47267449 | Msa0772850:CDS | 45.0% | |
| AGAAAAACTGTGGCAAGCGT+TGG | + | chr5_2:47267463-47267482 | Msa0772850:CDS | 45.0% | |
| !! | AAGCGTTGGCTTTGTATCTG+TGG | + | chr5_2:47267477-47267496 | Msa0772850:CDS | 45.0% |
| ! | GTCACAGTGGCCTTACAAAT+AGG | + | chr5_2:47266509-47266528 | Msa0772850:CDS | 45.0% |
| GAACGCAATCGAGGTTTCAT+CGG | + | chr5_2:47267001-47267020 | Msa0772850:intron | 45.0% | |
| ATTGATTGCCATAAGGGTCG+TGG | - | chr5_2:47267073-47267092 | None:intergenic | 45.0% | |
| GGTGATAGATGCATATGTGG+GGG | + | chr5_2:47267196-47267215 | Msa0772850:intron | 45.0% | |
| ! | CATGGTTCACAGTATCGAAG+AGG | + | chr5_2:47267219-47267238 | Msa0772850:CDS | 45.0% |
| !! | TGGGTTCTTTTTAGCGAGTC+TGG | - | chr5_2:47267246-47267265 | None:intergenic | 45.0% |
| GTCTAACAATGGTCGTGGAT+GGG | - | chr5_2:47267265-47267284 | None:intergenic | 45.0% | |
| TCCAAGAGCTAAGCCATTGA+AGG | + | chr5_2:47267332-47267351 | Msa0772850:CDS | 45.0% | |
| ! | TCCTTCAATGGCTTAGCTCT+TGG | - | chr5_2:47267336-47267355 | None:intergenic | 45.0% |
| TCGAAAATGTGGGAAGCCAT+TGG | + | chr5_2:47267413-47267432 | Msa0772850:CDS | 45.0% | |
| CAATCACCTTTCACTGCCAA+TGG | - | chr5_2:47267432-47267451 | None:intergenic | 45.0% | |
| CATTGGCAGTGAAAGGTGAT+TGG | + | chr5_2:47267430-47267449 | Msa0772850:CDS | 45.0% | |
| AGAAAAACTGTGGCAAGCGT+TGG | + | chr5_2:47267463-47267482 | Msa0772850:CDS | 45.0% | |
| !! | AAGCGTTGGCTTTGTATCTG+TGG | + | chr5_2:47267477-47267496 | Msa0772850:CDS | 45.0% |
| TCAAGCTGAGGATGTCACAG+TGG | + | chr5_2:47266496-47266515 | Msa0772850:CDS | 50.0% | |
| TTGCAACACGAACGCAATCG+AGG | + | chr5_2:47266992-47267011 | Msa0772850:intron | 50.0% | |
| TGATCCTACCACGACCCTTA+TGG | + | chr5_2:47267062-47267081 | Msa0772850:intron | 50.0% | |
| ATTGCCATAAGGGTCGTGGT+AGG | - | chr5_2:47267069-47267088 | None:intergenic | 50.0% | |
| TAGATGCATATGTGGGGGCA+TGG | + | chr5_2:47267201-47267220 | Msa0772850:intron | 50.0% | |
| GGTCTAACAATGGTCGTGGA+TGG | - | chr5_2:47267266-47267285 | None:intergenic | 50.0% | |
| GGTAGGTCTAACAATGGTCG+TGG | - | chr5_2:47267270-47267289 | None:intergenic | 50.0% | |
| TCAAGCTGAGGATGTCACAG+TGG | + | chr5_2:47266496-47266515 | Msa0772850:CDS | 50.0% | |
| TTGCAACACGAACGCAATCG+AGG | + | chr5_2:47266992-47267011 | Msa0772850:intron | 50.0% | |
| TGATCCTACCACGACCCTTA+TGG | + | chr5_2:47267062-47267081 | Msa0772850:intron | 50.0% | |
| ATTGCCATAAGGGTCGTGGT+AGG | - | chr5_2:47267069-47267088 | None:intergenic | 50.0% | |
| TAGATGCATATGTGGGGGCA+TGG | + | chr5_2:47267201-47267220 | Msa0772850:intron | 50.0% | |
| GGTCTAACAATGGTCGTGGA+TGG | - | chr5_2:47267266-47267285 | None:intergenic | 50.0% | |
| GGTAGGTCTAACAATGGTCG+TGG | - | chr5_2:47267270-47267289 | None:intergenic | 50.0% | |
| GGGAAGCCATTGGCAGTGAA+AGG | + | chr5_2:47267423-47267442 | Msa0772850:CDS | 55.0% | |
| GGGAAGCCATTGGCAGTGAA+AGG | + | chr5_2:47267423-47267442 | Msa0772850:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 47266458 | 47267590 | 47266458 | ID=Msa0772850;Name=Msa0772850 |
| chr5_2 | mRNA | 47266458 | 47267590 | 47266458 | ID=Msa0772850-mRNA-1;Parent=Msa0772850;Name=Msa0772850-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|1|0|2|0|210 |
| chr5_2 | exon | 47266458 | 47266700 | 47266458 | ID=Msa0772850-mRNA-1:exon:14167;Parent=Msa0772850-mRNA-1 |
| chr5_2 | exon | 47267204 | 47267590 | 47267204 | ID=Msa0772850-mRNA-1:exon:14168;Parent=Msa0772850-mRNA-1 |
| chr5_2 | CDS | 47266458 | 47266700 | 47266458 | ID=Msa0772850-mRNA-1:cds;Parent=Msa0772850-mRNA-1 |
| chr5_2 | CDS | 47267204 | 47267590 | 47267204 | ID=Msa0772850-mRNA-1:cds;Parent=Msa0772850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
