Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0773680 | sp|Q9LRH6|GAT25_ARATH | 58.586 | 198 | 80 | 1 | 72 | 267 | 81 | 278 | 5.82e-73 | 229 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0773680 | G7JYF5 | 97.213 | 287 | 7 | 1 | 1 | 287 | 1 | 286 | 0.0 | 581 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0773680 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0773680 | MtrunA17_Chr5g0427661 | 97.213 | 287 | 7 | 1 | 1 | 287 | 1 | 286 | 0.0 | 581 |
| Msa0773680 | MtrunA17_Chr3g0132761 | 60.465 | 258 | 71 | 8 | 46 | 275 | 42 | 296 | 3.75e-93 | 278 |
| Msa0773680 | MtrunA17_Chr3g0132751 | 54.595 | 185 | 76 | 5 | 74 | 252 | 69 | 251 | 2.28e-57 | 187 |
| Msa0773680 | MtrunA17_Chr4g0049741 | 51.208 | 207 | 80 | 8 | 53 | 245 | 20 | 219 | 3.26e-56 | 184 |
| Msa0773680 | MtrunA17_Chr4g0002231 | 56.701 | 97 | 28 | 4 | 152 | 237 | 42 | 135 | 1.85e-26 | 101 |
| Msa0773680 | MtrunA17_Chr3g0102511 | 39.216 | 102 | 57 | 3 | 159 | 259 | 4 | 101 | 4.34e-15 | 75.1 |
| Msa0773680 | MtrunA17_Chr4g0002261 | 68.627 | 51 | 15 | 1 | 127 | 176 | 16 | 66 | 7.81e-15 | 67.8 |
| Msa0773680 | MtrunA17_Chr4g0002251 | 67.500 | 40 | 13 | 0 | 199 | 238 | 5 | 44 | 2.63e-13 | 63.9 |
| Msa0773680 | MtrunA17_Chr4g0061021 | 52.459 | 61 | 27 | 1 | 135 | 195 | 505 | 563 | 2.53e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0773680 | AT4G24470.1 | 58.586 | 198 | 80 | 1 | 72 | 267 | 81 | 278 | 5.92e-74 | 229 |
| Msa0773680 | AT4G24470.2 | 58.586 | 198 | 80 | 1 | 72 | 267 | 81 | 278 | 5.92e-74 | 229 |
| Msa0773680 | AT4G24470.3 | 62.778 | 180 | 65 | 1 | 72 | 249 | 81 | 260 | 1.63e-73 | 228 |
| Msa0773680 | AT1G51600.1 | 59.893 | 187 | 64 | 4 | 70 | 245 | 79 | 265 | 1.07e-68 | 215 |
| Msa0773680 | AT1G51600.2 | 59.893 | 187 | 64 | 4 | 70 | 245 | 79 | 265 | 1.07e-68 | 215 |
| Msa0773680 | AT3G21175.1 | 51.452 | 241 | 84 | 7 | 38 | 245 | 21 | 261 | 3.38e-68 | 214 |
| Msa0773680 | AT3G21175.2 | 51.667 | 240 | 83 | 7 | 38 | 245 | 21 | 259 | 2.57e-67 | 211 |
| Msa0773680 | AT3G21175.3 | 47.802 | 182 | 69 | 6 | 38 | 194 | 21 | 201 | 7.73e-38 | 133 |
| Msa0773680 | AT2G46670.1 | 50.909 | 55 | 27 | 0 | 129 | 183 | 126 | 180 | 3.51e-11 | 61.6 |
| Msa0773680 | AT2G46790.5 | 50.909 | 55 | 27 | 0 | 129 | 183 | 254 | 308 | 6.49e-11 | 62.4 |
| Msa0773680 | AT2G46790.4 | 50.909 | 55 | 27 | 0 | 129 | 183 | 254 | 308 | 6.49e-11 | 62.4 |
| Msa0773680 | AT2G46790.1 | 50.909 | 55 | 27 | 0 | 129 | 183 | 411 | 465 | 6.82e-11 | 62.8 |
| Msa0773680 | AT2G46790.2 | 50.909 | 55 | 27 | 0 | 129 | 183 | 294 | 348 | 8.25e-11 | 62.4 |
Find 98 sgRNAs with CRISPR-Local
Find 322 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAACCTCTACAACAAATT+AGG | 0.141320 | 5_2:-48980556 | Msa0773680:five_prime_UTR |
| TATACTGGTACTTGTCTATT+TGG | 0.235679 | 5_2:-48976025 | Msa0773680:three_prime_UTR |
| CGCTTCTCAAATTCTCTCTT+TGG | 0.239601 | 5_2:-48980525 | Msa0773680:five_prime_UTR |
| AAACTTTGAAGTGCAAATTC+AGG | 0.278085 | 5_2:+48980315 | None:intergenic |
| ATGGCCCTCGCCGCATCATT+GGG | 0.283489 | 5_2:+48977260 | None:intergenic |
| TCCAACTCCGATGCTGTTTA+CGG | 0.309806 | 5_2:-48980354 | Msa0773680:CDS |
| AAAACCTCTACAACAAATTA+GGG | 0.317019 | 5_2:-48980555 | Msa0773680:five_prime_UTR |
| GATGGCCCTCGCCGCATCAT+TGG | 0.329482 | 5_2:+48977259 | None:intergenic |
| TTTCAACAACTTGACTAAAC+TGG | 0.331435 | 5_2:-48975695 | Msa0773680:three_prime_UTR |
| TTGGATGCACAGCTGTCTAT+TGG | 0.332662 | 5_2:-48976006 | Msa0773680:three_prime_UTR |
| GTTGTAGATGGTTGCTCAAT+AGG | 0.337983 | 5_2:+48976061 | None:intergenic |
| TCGCTTTCGCCGGCGGTGAT+TGG | 0.347965 | 5_2:+48980450 | None:intergenic |
| CTGGTCTGTACCACAACTAT+TGG | 0.364949 | 5_2:+48977532 | None:intergenic |
| TAAATATATCAAAATACATT+GGG | 0.372782 | 5_2:+48975911 | None:intergenic |
| ACTTGACTAAACTGGTAAAC+TGG | 0.374073 | 5_2:-48975687 | Msa0773680:three_prime_UTR |
| GAAAGAAATACCTGCTCAAC+AGG | 0.391041 | 5_2:+48976386 | None:intergenic |
| GGTCACTTTGCAATGCTTGT+GGG | 0.405446 | 5_2:-48977228 | Msa0773680:CDS |
| GGCGAAAGCGACGACGGTTC+CGG | 0.410307 | 5_2:-48980438 | Msa0773680:CDS |
| ACTATTTGCTAGTACTATAC+TGG | 0.413848 | 5_2:-48976040 | Msa0773680:exon |
| ATGATGCGGCGAGGGCCATC+TGG | 0.424046 | 5_2:-48977256 | Msa0773680:CDS |
| AAGCCTCATTACTTAGGTTC+CGG | 0.424048 | 5_2:-48979060 | Msa0773680:CDS |
| GTCGATGCCGGCGTCGGGAC+CGG | 0.425728 | 5_2:+48980419 | None:intergenic |
| CAGCTTACGCTGTCGTTTCG+TGG | 0.436824 | 5_2:-48980279 | Msa0773680:CDS |
| AGGTCACTTTGCAATGCTTG+TGG | 0.439332 | 5_2:-48977229 | Msa0773680:CDS |
| TTTCTGATGGACTGGCATCC+TGG | 0.442732 | 5_2:+48977501 | None:intergenic |
| TTGGGGAAAACAACAAAATC+AGG | 0.451746 | 5_2:+48975929 | None:intergenic |
| TCAATCGGTGTTGTTACTGT+TGG | 0.455881 | 5_2:-48980008 | Msa0773680:CDS |
| CAATCGGTGTTGTTACTGTT+GGG | 0.455920 | 5_2:-48980007 | Msa0773680:CDS |
| AGATAATTCCTGATGTCTCT+TGG | 0.456240 | 5_2:+48976415 | None:intergenic |
| ATCTTTCTTTCCTCTTCTGC+CGG | 0.458420 | 5_2:+48979041 | None:intergenic |
| ATGTAGGATGCAGCGAAAGA+AGG | 0.464044 | 5_2:-48977588 | Msa0773680:intron |
| TGAGCGTCGATGCCGGCGTC+GGG | 0.466145 | 5_2:+48980414 | None:intergenic |
| TACTAGCAAATAGTTGTAGA+TGG | 0.470683 | 5_2:+48976049 | None:intergenic |
| AAATTCTCTCTTTGGTGCAA+TGG | 0.471067 | 5_2:-48980517 | Msa0773680:exon |
| ATCTACTGTACCTGTTGAGC+AGG | 0.474916 | 5_2:-48976396 | Msa0773680:intron |
| CGGTGCCTCAACAAAGTTTG+AGG | 0.475750 | 5_2:-48979952 | Msa0773680:CDS |
| ATTGAGAATCGAACCTTAGC+AGG | 0.477071 | 5_2:+48980228 | None:intergenic |
| CAAGCATTGCAAAGTGACCT+TGG | 0.478461 | 5_2:+48977232 | None:intergenic |
| GCCGTAAACAGCATCGGAGT+TGG | 0.479472 | 5_2:+48980353 | None:intergenic |
| TGTAGGATGCAGCGAAAGAA+GGG | 0.482115 | 5_2:-48977587 | Msa0773680:intron |
| ATCGAGAAGCCTCATTACTT+AGG | 0.494390 | 5_2:-48979066 | Msa0773680:CDS |
| TGGCATCCTGGCTAGAATCC+TGG | 0.494476 | 5_2:+48977513 | None:intergenic |
| TCAGTACGAAACGCACGGTA+TGG | 0.494591 | 5_2:-48980382 | Msa0773680:CDS |
| TGACTCTGTTACGCCTGCTA+AGG | 0.495608 | 5_2:-48980241 | Msa0773680:intron |
| CTAAATATATCAAAATACAT+TGG | 0.495996 | 5_2:+48975910 | None:intergenic |
| ACCGCATTCACACCAGCATC+AGG | 0.496179 | 5_2:+48979971 | None:intergenic |
| TTTCATGTTACAGGTTCAAT+CGG | 0.502821 | 5_2:-48980023 | Msa0773680:intron |
| GGAACCGTCGTCGCTTTCGC+CGG | 0.503198 | 5_2:+48980440 | None:intergenic |
| TACTTAGGTTCCGGCAGAAG+AGG | 0.507196 | 5_2:-48979051 | Msa0773680:CDS |
| GACGGTTCCGGTCCCGACGC+CGG | 0.509123 | 5_2:-48980426 | Msa0773680:CDS |
| CAACCCCAATGATGCGGCGA+GGG | 0.509404 | 5_2:-48977264 | Msa0773680:CDS |
| ACTACATCTAAGAAACAAGA+TGG | 0.513677 | 5_2:-48977557 | Msa0773680:CDS |
| TCCGATGCTGTTTACGGCAA+CGG | 0.517634 | 5_2:-48980348 | Msa0773680:CDS |
| TTGAGCGTCGATGCCGGCGT+CGG | 0.518484 | 5_2:+48980413 | None:intergenic |
| ATTGGTACTGTGGTGTTCAA+AGG | 0.519474 | 5_2:+48980468 | None:intergenic |
| AGACCTTTCCAAGAGACATC+AGG | 0.523306 | 5_2:-48976423 | Msa0773680:CDS |
| TCACGAGATTTCTGATGGAC+TGG | 0.530433 | 5_2:+48977493 | None:intergenic |
| GAAACCCTAATTTGTTGTAG+AGG | 0.536285 | 5_2:+48980551 | None:intergenic |
| GGTTGAGAGTGTTCGTACAT+TGG | 0.539771 | 5_2:+48980489 | None:intergenic |
| ACCGTCGTCGCTTTCGCCGG+CGG | 0.540258 | 5_2:+48980443 | None:intergenic |
| TAAATCTAGATGAAATTACA+TGG | 0.543242 | 5_2:-48975882 | Msa0773680:three_prime_UTR |
| TGCGATGACTAGGTTGATCA+AGG | 0.549206 | 5_2:-48976133 | Msa0773680:intron |
| CAAAGTGACCTTGGACCAGA+TGG | 0.549647 | 5_2:+48977241 | None:intergenic |
| TGAGAGTGTTCGTACATTGG+TGG | 0.550890 | 5_2:+48980492 | None:intergenic |
| TTGATGTTGAGCGTCGATGC+CGG | 0.559465 | 5_2:+48980407 | None:intergenic |
| TACAGACCAGGATTCTAGCC+AGG | 0.560530 | 5_2:-48977519 | Msa0773680:CDS |
| CAAGCTCACGAGATTTCTGA+TGG | 0.565628 | 5_2:+48977488 | None:intergenic |
| CAATAGTTGTGGTACAGACC+AGG | 0.567890 | 5_2:-48977531 | Msa0773680:CDS |
| GGATGTGAACAACCTGATGC+TGG | 0.568670 | 5_2:-48979983 | Msa0773680:CDS |
| CTGCCGGAACCTAAGTAATG+AGG | 0.570375 | 5_2:+48979057 | None:intergenic |
| ATTCCTGATGTCTCTTGGAA+AGG | 0.575092 | 5_2:+48976420 | None:intergenic |
| GAAGAGAGTGCAGAAGGTGT+AGG | 0.575675 | 5_2:+48980617 | None:intergenic |
| GGTGCCTCAACAAAGTTTGA+GGG | 0.580121 | 5_2:-48979951 | Msa0773680:CDS |
| ATAGGAGTGATGTTGTGTGC+AGG | 0.580688 | 5_2:+48976079 | None:intergenic |
| GCCGTTGCCGTAAACAGCAT+CGG | 0.590158 | 5_2:+48980347 | None:intergenic |
| GGCGAGGGCCATCTGGTCCA+AGG | 0.590488 | 5_2:-48977249 | Msa0773680:CDS |
| CAAGATGGGTCCAATAGTTG+TGG | 0.595326 | 5_2:-48977542 | Msa0773680:CDS |
| TTAAATAGTTGCACACATTG+TGG | 0.601041 | 5_2:-48977301 | Msa0773680:intron |
| CAAGGTAACAACTCAGACTG+TGG | 0.601587 | 5_2:-48976115 | Msa0773680:CDS |
| CAAAATCAACCCCAATGATG+CGG | 0.615905 | 5_2:-48977270 | Msa0773680:CDS |
| TCGGTGTTGTTACTGTTGGG+TGG | 0.618046 | 5_2:-48980004 | Msa0773680:CDS |
| TACGTCAAGAAGTTGCACTC+AGG | 0.620095 | 5_2:-48978991 | Msa0773680:intron |
| TTTGTGTTTGCGAAAGCGAG+GGG | 0.626213 | 5_2:+48980594 | None:intergenic |
| ACCACCCTCAAACTTTGTTG+AGG | 0.626395 | 5_2:+48979947 | None:intergenic |
| ACCGCCGGCGAAAGCGACGA+CGG | 0.634534 | 5_2:-48980444 | Msa0773680:CDS |
| TAGGAGTGATGTTGTGTGCA+GGG | 0.638031 | 5_2:+48976080 | None:intergenic |
| TGGCCCTCGCCGCATCATTG+GGG | 0.646878 | 5_2:+48977261 | None:intergenic |
| CTACATCTAAGAAACAAGAT+GGG | 0.649224 | 5_2:-48977556 | Msa0773680:CDS |
| AAATCTAGATGAAATTACAT+GGG | 0.649762 | 5_2:-48975881 | Msa0773680:three_prime_UTR |
| AAATATATCAAAATACATTG+GGG | 0.655044 | 5_2:+48975912 | None:intergenic |
| ACCACAGTACCAATCACCGC+CGG | 0.655305 | 5_2:-48980459 | Msa0773680:CDS |
| GCCTCAACAAAGTTTGAGGG+TGG | 0.655336 | 5_2:-48979948 | Msa0773680:intron |
| GATGCTGTTTACGGCAACGG+CGG | 0.661829 | 5_2:-48980345 | Msa0773680:CDS |
| ACCTGATGCTGGTGTGAATG+CGG | 0.662406 | 5_2:-48979972 | Msa0773680:CDS |
| TCAACCCCAATGATGCGGCG+AGG | 0.668347 | 5_2:-48977265 | Msa0773680:CDS |
| GCCGGCGGTGATTGGTACTG+TGG | 0.669157 | 5_2:+48980458 | None:intergenic |
| CAAATTCAGTACGAAACGCA+CGG | 0.681403 | 5_2:-48980387 | Msa0773680:CDS |
| TTGTGTTTGCGAAAGCGAGG+GGG | 0.698518 | 5_2:+48980595 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTGAATTTTTTTATTATT+TGG | - | chr5_2:48976243-48976262 | Msa0773680:intron | 10.0% |
| !!! | GTTGAATTTTTTTATTATTT+GGG | - | chr5_2:48976244-48976263 | Msa0773680:intron | 10.0% |
| !!! | TTTATTTTATGTTTAAATGT+AGG | - | chr5_2:48978705-48978724 | Msa0773680:intron | 10.0% |
| !!! | TTTGATTAAAATTTGTTTAA+GGG | + | chr5_2:48980039-48980058 | None:intergenic | 10.0% |
| !!! | TTTTGATTAAAATTTGTTTA+AGG | + | chr5_2:48980040-48980059 | None:intergenic | 10.0% |
| !! | TAAATATATCAAAATACATT+GGG | + | chr5_2:48980401-48980420 | None:intergenic | 10.0% |
| !!! | TGTTTATTATTGATTTTTCT+TGG | - | chr5_2:48976134-48976153 | Msa0773680:intron | 15.0% |
| !! | CATTATTCATAAATCATAAT+AGG | - | chr5_2:48976710-48976729 | Msa0773680:intron | 15.0% |
| !!! | CTTAATCTTGTATTTTTTAA+TGG | - | chr5_2:48978577-48978596 | Msa0773680:intron | 15.0% |
| !! | AAAAAAAAAAAAAAAGCCTT+TGG | + | chr5_2:48979138-48979157 | None:intergenic | 15.0% |
| !!! | TTTGGGAATATTAAAATTTT+GGG | - | chr5_2:48979608-48979627 | Msa0773680:intron | 15.0% |
| !! | AAATATATCAAAATACATTG+GGG | + | chr5_2:48980400-48980419 | None:intergenic | 15.0% |
| !! | CTAAATATATCAAAATACAT+TGG | + | chr5_2:48980402-48980421 | None:intergenic | 15.0% |
| !! | ATTTGAATATGCATTAGATT+TGG | - | chr5_2:48976473-48976492 | Msa0773680:intron | 20.0% |
| !! | TTTGAATATGCATTAGATTT+GGG | - | chr5_2:48976474-48976493 | Msa0773680:intron | 20.0% |
| !! | AAATTATATCTGATACGTAT+CGG | + | chr5_2:48976856-48976875 | None:intergenic | 20.0% |
| !! | AGTGGAAATTTATAATTCTT+TGG | - | chr5_2:48977171-48977190 | Msa0773680:intron | 20.0% |
| !! | GTGGAAATTTATAATTCTTT+GGG | - | chr5_2:48977172-48977191 | Msa0773680:intron | 20.0% |
| !!! | ATTTATAATTCTTTGGGTTT+TGG | - | chr5_2:48977178-48977197 | Msa0773680:intron | 20.0% |
| !!! | TGTAATTGACTATATTTTGT+AGG | + | chr5_2:48977224-48977243 | None:intergenic | 20.0% |
| !! | AAGAGAATAATATAACTGAA+TGG | - | chr5_2:48977510-48977529 | Msa0773680:CDS | 20.0% |
| !! | AATCTGAAAATAATTGTAAG+AGG | + | chr5_2:48977616-48977635 | None:intergenic | 20.0% |
| !! | TATATTACATAGAATCATGT+TGG | - | chr5_2:48977643-48977662 | Msa0773680:intron | 20.0% |
| !! | TATACAACAACAGATATTTA+TGG | - | chr5_2:48977833-48977852 | Msa0773680:intron | 20.0% |
| !! | ATACAACAACAGATATTTAT+GGG | - | chr5_2:48977834-48977853 | Msa0773680:intron | 20.0% |
| !! | TTTATCAACAAATTTAACAG+AGG | + | chr5_2:48977977-48977996 | None:intergenic | 20.0% |
| !!! | TTGTTTCTAAACTAAACAAT+AGG | + | chr5_2:48978270-48978289 | None:intergenic | 20.0% |
| !! | CTATGAGATATAAATTATTG+AGG | + | chr5_2:48978403-48978422 | None:intergenic | 20.0% |
| !!! | TATAAAAATGTATTGATGAG+AGG | + | chr5_2:48978554-48978573 | None:intergenic | 20.0% |
| !!! | TCTCATCAATACATTTTTAT+AGG | - | chr5_2:48978553-48978572 | Msa0773680:intron | 20.0% |
| !! | CATAAAATAAAGAGTGAAAT+TGG | + | chr5_2:48978696-48978715 | None:intergenic | 20.0% |
| !!! | TCGGAACAAAAAATATATTT+TGG | + | chr5_2:48978865-48978884 | None:intergenic | 20.0% |
| !!! | TTTTTTTGAAAATTTGTCTG+TGG | - | chr5_2:48979151-48979170 | Msa0773680:intron | 20.0% |
| !!! | TTTTTTGAAAATTTGTCTGT+GGG | - | chr5_2:48979152-48979171 | Msa0773680:intron | 20.0% |
| !!! | TTTGTTGTGAAACAAATTTA+TGG | + | chr5_2:48979533-48979552 | None:intergenic | 20.0% |
| !!! | GTTTGGGAATATTAAAATTT+TGG | - | chr5_2:48979607-48979626 | Msa0773680:intron | 20.0% |
| !! | CATCATAATCTATACTATAA+AGG | - | chr5_2:48979972-48979991 | Msa0773680:CDS | 20.0% |
| !! | ATCTATACTATAAAGGAAAT+AGG | - | chr5_2:48979979-48979998 | Msa0773680:CDS | 20.0% |
| !! | TAAATCTAGATGAAATTACA+TGG | - | chr5_2:48980427-48980446 | Msa0773680:CDS | 20.0% |
| !! | AAATCTAGATGAAATTACAT+GGG | - | chr5_2:48980428-48980447 | Msa0773680:CDS | 20.0% |
| !!! | TAGAGGTTTTGAGTTTAATT+GGG | + | chr5_2:48975744-48975763 | None:intergenic | 25.0% |
| ! | AAAACCTCTACAACAAATTA+GGG | - | chr5_2:48975754-48975773 | Msa0773680:intron | 25.0% |
| ! | TGGGATTGAAAATTTGTATT+TGG | - | chr5_2:48976263-48976282 | Msa0773680:intron | 25.0% |
| ! | ACATAGGAATTGGTAAATTA+TGG | - | chr5_2:48976655-48976674 | Msa0773680:intron | 25.0% |
| ! | CATAGGAATTGGTAAATTAT+GGG | - | chr5_2:48976656-48976675 | Msa0773680:intron | 25.0% |
| !!! | ATTTGGCATTTTTTGAGTAA+CGG | + | chr5_2:48976746-48976765 | None:intergenic | 25.0% |
| ! | ACTCAAAAAATGCCAAATAT+CGG | - | chr5_2:48976748-48976767 | Msa0773680:intron | 25.0% |
| !! | GATATAATTTTATTGTGCTC+CGG | - | chr5_2:48976866-48976885 | Msa0773680:intron | 25.0% |
| ! | ATAAGTACTACTACTATCAT+GGG | + | chr5_2:48976901-48976920 | None:intergenic | 25.0% |
| !! | AGTACTTATGATTTCCTTTT+TGG | - | chr5_2:48976912-48976931 | Msa0773680:intron | 25.0% |
| ! | ATACATGCTTCATAGATAAT+AGG | - | chr5_2:48977126-48977145 | Msa0773680:intron | 25.0% |
| ! | TGAGAATCTAAATCATTTGA+AGG | + | chr5_2:48978091-48978110 | None:intergenic | 25.0% |
| ! | TTTATATCTCATAGAGTGAA+AGG | - | chr5_2:48978409-48978428 | Msa0773680:intron | 25.0% |
| !!! | TTTAATGGACTAAAAACTGA+TGG | - | chr5_2:48978592-48978611 | Msa0773680:intron | 25.0% |
| !!! | GATGCATTGTTATTTCATAT+TGG | + | chr5_2:48978925-48978944 | None:intergenic | 25.0% |
| ! | TTTAACCACCATTCTTTAAA+TGG | - | chr5_2:48978980-48978999 | Msa0773680:intron | 25.0% |
| !! | TAAACATGCCATTTAAAGAA+TGG | + | chr5_2:48978991-48979010 | None:intergenic | 25.0% |
| ! | AAGATAAAGCAAAACAAACA+TGG | + | chr5_2:48979382-48979401 | None:intergenic | 25.0% |
| !!! | AGATATTTTGAAATGTCTTG+TGG | - | chr5_2:48979455-48979474 | Msa0773680:intron | 25.0% |
| !!! | ATATTGCTTTTTGAACTTTG+TGG | - | chr5_2:48979642-48979661 | Msa0773680:intron | 25.0% |
| !!! | TTTCTTTTAAAACTTGTCAG+AGG | - | chr5_2:48979670-48979689 | Msa0773680:intron | 25.0% |
| !!! | TTCTTTTAAAACTTGTCAGA+GGG | - | chr5_2:48979671-48979690 | Msa0773680:intron | 25.0% |
| !! | ATAAAGGAAATAGGTTGTTT+TGG | - | chr5_2:48979988-48980007 | Msa0773680:CDS | 25.0% |
| !!! | TAAAGGAAATAGGTTGTTTT+GGG | - | chr5_2:48979989-48980008 | Msa0773680:CDS | 25.0% |
| !! | TGTTTAAGGGTATAATTGAA+AGG | + | chr5_2:48980026-48980045 | None:intergenic | 25.0% |
| ! | CAAGCAAAAAAATGGTAAAA+TGG | + | chr5_2:48980158-48980177 | None:intergenic | 25.0% |
| !! | ATTTTGTCTGGATATACTTT+TGG | - | chr5_2:48980472-48980491 | Msa0773680:CDS | 25.0% |
| !! | TTTTGTCTGGATATACTTTT+GGG | - | chr5_2:48980473-48980492 | Msa0773680:CDS | 25.0% |
| !!! | GTAGAGGTTTTGAGTTTAAT+TGG | + | chr5_2:48975745-48975764 | None:intergenic | 30.0% |
| CAAAACCTCTACAACAAATT+AGG | - | chr5_2:48975753-48975772 | Msa0773680:intron | 30.0% | |
| !! | AAACTTTGAAGTGCAAATTC+AGG | + | chr5_2:48975997-48976016 | None:intergenic | 30.0% |
| ! | TGTATTTGGTTTCATGTTAC+AGG | - | chr5_2:48976277-48976296 | Msa0773680:intron | 30.0% |
| TTTCATGTTACAGGTTCAAT+CGG | - | chr5_2:48976286-48976305 | Msa0773680:intron | 30.0% | |
| ! | ATTTTCAACATGTTACAAGC+TGG | + | chr5_2:48976448-48976467 | None:intergenic | 30.0% |
| !! | TTGATAATGATCCTCAACAT+AGG | - | chr5_2:48976639-48976658 | Msa0773680:intron | 30.0% |
| ATTTACCAATTCCTATGTTG+AGG | + | chr5_2:48976653-48976672 | None:intergenic | 30.0% | |
| !!! | TTTGGCATTTTTTGAGTAAC+GGG | + | chr5_2:48976745-48976764 | None:intergenic | 30.0% |
| TTAATTGTTTGATACTGTCC+CGG | + | chr5_2:48976803-48976822 | None:intergenic | 30.0% | |
| CATAAGTACTACTACTATCA+TGG | + | chr5_2:48976902-48976921 | None:intergenic | 30.0% | |
| ! | CTTATGATTTCCTTTTTGGA+CGG | - | chr5_2:48976916-48976935 | Msa0773680:intron | 30.0% |
| TACTTGACATGATAAGGATA+CGG | + | chr5_2:48977107-48977126 | None:intergenic | 30.0% | |
| CATGTATACTTGACATGATA+AGG | + | chr5_2:48977113-48977132 | None:intergenic | 30.0% | |
| TTCATCATGCAAATGATGAT+TGG | - | chr5_2:48977406-48977425 | Msa0773680:intron | 30.0% | |
| TCATCATGCAAATGATGATT+GGG | - | chr5_2:48977407-48977426 | Msa0773680:intron | 30.0% | |
| AAAGAAAACACGATCATACT+GGG | + | chr5_2:48977581-48977600 | None:intergenic | 30.0% | |
| ATAGAATCATGTTGGCATTT+AGG | - | chr5_2:48977651-48977670 | Msa0773680:intron | 30.0% | |
| ! | GTATAGTCAATTTGGTAACA+GGG | + | chr5_2:48977818-48977837 | None:intergenic | 30.0% |
| ! | TGTATAGTCAATTTGGTAAC+AGG | + | chr5_2:48977819-48977838 | None:intergenic | 30.0% |
| CTGTTGTTGTATAGTCAATT+TGG | + | chr5_2:48977826-48977845 | None:intergenic | 30.0% | |
| ! | CAATTTCAACTTCGTTGATT+TGG | - | chr5_2:48977857-48977876 | Msa0773680:intron | 30.0% |
| !! | CTTTTTAATTGTGGAGGAAT+TGG | - | chr5_2:48977914-48977933 | Msa0773680:intron | 30.0% |
| !! | TTCATTTTTGCCCTTTTGAT+TGG | - | chr5_2:48977999-48978018 | Msa0773680:intron | 30.0% |
| GAAAATAACACACAAAACCA+AGG | + | chr5_2:48978028-48978047 | None:intergenic | 30.0% | |
| CTAAGTTATCCTCAAATTCT+CGG | + | chr5_2:48978138-48978157 | None:intergenic | 30.0% | |
| ! | TGTTAGTTTCTTGTCTACTA+TGG | + | chr5_2:48978307-48978326 | None:intergenic | 30.0% |
| TGGTGTATGCTATATGTAAT+TGG | - | chr5_2:48978463-48978482 | Msa0773680:intron | 30.0% | |
| AAAGTGCAACATAGATAACA+TGG | + | chr5_2:48978639-48978658 | None:intergenic | 30.0% | |
| ATGTTGCACTTTCTCTTATT+TGG | - | chr5_2:48978647-48978666 | Msa0773680:intron | 30.0% | |
| ACTACATCTAAGAAACAAGA+TGG | - | chr5_2:48978752-48978771 | Msa0773680:intron | 30.0% | |
| CTACATCTAAGAAACAAGAT+GGG | - | chr5_2:48978753-48978772 | Msa0773680:intron | 30.0% | |
| !!! | GCTTGTTTTTACTGTTGTTA+TGG | - | chr5_2:48978839-48978858 | Msa0773680:intron | 30.0% |
| TTAAATAGTTGCACACATTG+TGG | - | chr5_2:48979008-48979027 | Msa0773680:CDS | 30.0% | |
| AAAATGAAGAATCTAGCTAG+TGG | - | chr5_2:48979550-48979569 | Msa0773680:intron | 30.0% | |
| ! | AGACGATAATTCGATTTTTG+AGG | + | chr5_2:48979720-48979739 | None:intergenic | 30.0% |
| AAAATCGAATTATCGTCTCT+TGG | - | chr5_2:48979722-48979741 | Msa0773680:intron | 30.0% | |
| AAATCGAATTATCGTCTCTT+GGG | - | chr5_2:48979723-48979742 | Msa0773680:intron | 30.0% | |
| GGGAACTGTTAATAATAAAC+TGG | + | chr5_2:48979823-48979842 | None:intergenic | 30.0% | |
| TACTAGCAAATAGTTGTAGA+TGG | + | chr5_2:48980263-48980282 | None:intergenic | 30.0% | |
| ! | ACTATTTGCTAGTACTATAC+TGG | - | chr5_2:48980269-48980288 | Msa0773680:CDS | 30.0% |
| TATACTGGTACTTGTCTATT+TGG | - | chr5_2:48980284-48980303 | Msa0773680:CDS | 30.0% | |
| TTTCAACAACTTGACTAAAC+TGG | - | chr5_2:48980614-48980633 | Msa0773680:five_prime_UTR | 30.0% | |
| !! | GAAACCCTAATTTGTTGTAG+AGG | + | chr5_2:48975761-48975780 | None:intergenic | 35.0% |
| ! | AAATTCTCTCTTTGGTGCAA+TGG | - | chr5_2:48975792-48975811 | Msa0773680:three_prime_UTR | 35.0% |
| AAGGTTCGATTCTCAATTGT+TGG | - | chr5_2:48976087-48976106 | Msa0773680:CDS | 35.0% | |
| TCAACAATACCTGTAGGTTA+GGG | - | chr5_2:48976570-48976589 | Msa0773680:intron | 35.0% | |
| TAGGTTAGGGGATATAAAGA+TGG | - | chr5_2:48976583-48976602 | Msa0773680:intron | 35.0% | |
| !! | ATATAAAGATGGCTTGGTGT+GGG | - | chr5_2:48976594-48976613 | Msa0773680:intron | 35.0% |
| ATGATCCTCAACATAGGAAT+TGG | - | chr5_2:48976645-48976664 | Msa0773680:intron | 35.0% | |
| ATGAATACACTCTGTGTGAA+TGG | - | chr5_2:48976687-48976706 | Msa0773680:intron | 35.0% | |
| !!! | TTGGCATTTTTTGAGTAACG+GGG | + | chr5_2:48976744-48976763 | None:intergenic | 35.0% |
| ! | ATTTTATTGTGCTCCGGATA+CGG | - | chr5_2:48976872-48976891 | Msa0773680:intron | 35.0% |
| ! | ATCTTAAGTACCGTCCAAAA+AGG | + | chr5_2:48976929-48976948 | None:intergenic | 35.0% |
| GATTAATGTTCAAGTGCAAG+TGG | - | chr5_2:48977153-48977172 | Msa0773680:intron | 35.0% | |
| CATCATTTGCATGATGAATC+TGG | + | chr5_2:48977404-48977423 | None:intergenic | 35.0% | |
| TATTAGATCTGTTAGCAAGC+TGG | - | chr5_2:48977538-48977557 | Msa0773680:CDS | 35.0% | |
| CAAAGAAAACACGATCATAC+TGG | + | chr5_2:48977582-48977601 | None:intergenic | 35.0% | |
| AATAATTGTAAGAGGAAGCC+TGG | + | chr5_2:48977608-48977627 | None:intergenic | 35.0% | |
| !! | ATTGCCTTCTCATTTTGAAG+TGG | - | chr5_2:48977743-48977762 | Msa0773680:intron | 35.0% |
| ! | TATGCCACTTCAAAATGAGA+AGG | + | chr5_2:48977750-48977769 | None:intergenic | 35.0% |
| !!! | TTCTCATTTTGAAGTGGCAT+AGG | - | chr5_2:48977749-48977768 | Msa0773680:intron | 35.0% |
| ! | GCATAGGATGGTAGATTTTA+CGG | - | chr5_2:48977765-48977784 | Msa0773680:intron | 35.0% |
| !! | CGGGTCTGACAATTTAATTT+TGG | - | chr5_2:48977792-48977811 | Msa0773680:intron | 35.0% |
| AACCTATACTATTGAGAACC+TGG | - | chr5_2:48977890-48977909 | Msa0773680:intron | 35.0% | |
| !! | GAACCTGGTCTTTTTAATTG+TGG | - | chr5_2:48977905-48977924 | Msa0773680:intron | 35.0% |
| CGAGAATTTGAGGATAACTT+AGG | - | chr5_2:48978136-48978155 | Msa0773680:intron | 35.0% | |
| ! | TGTCAAAAGAGTTCTGGTAT+GGG | - | chr5_2:48978173-48978192 | Msa0773680:intron | 35.0% |
| GAATGTTGTTCTTTGACTAG+GGG | + | chr5_2:48978356-48978375 | None:intergenic | 35.0% | |
| GGAATGTTGTTCTTTGACTA+GGG | + | chr5_2:48978357-48978376 | None:intergenic | 35.0% | |
| ATCATGCATCCAAGATACAT+GGG | + | chr5_2:48978379-48978398 | None:intergenic | 35.0% | |
| TATCATGCATCCAAGATACA+TGG | + | chr5_2:48978380-48978399 | None:intergenic | 35.0% | |
| ATATCTCATAGAGTGAAAGG+TGG | - | chr5_2:48978412-48978431 | Msa0773680:intron | 35.0% | |
| ATTGCTACAACTACAAGTCT+CGG | + | chr5_2:48978884-48978903 | None:intergenic | 35.0% | |
| ! | ACATGCCATTTAAAGAATGG+TGG | + | chr5_2:48978988-48979007 | None:intergenic | 35.0% |
| TGCAAATTCCAATGCAATGA+AGG | + | chr5_2:48979250-48979269 | None:intergenic | 35.0% | |
| ATTTACGAGCTCTGTCTATT+TGG | - | chr5_2:48979425-48979444 | Msa0773680:intron | 35.0% | |
| !!! | TGGTCTATTTTTGCACTGTT+TGG | - | chr5_2:48979590-48979609 | Msa0773680:intron | 35.0% |
| !!! | GGTCTATTTTTGCACTGTTT+GGG | - | chr5_2:48979591-48979610 | Msa0773680:intron | 35.0% |
| !! | ATTCGATTTTTGAGGATGAG+TGG | + | chr5_2:48979712-48979731 | None:intergenic | 35.0% |
| AATCGAATTATCGTCTCTTG+GGG | - | chr5_2:48979724-48979743 | Msa0773680:intron | 35.0% | |
| GATTCACAGTTGAACGAATT+AGG | + | chr5_2:48979780-48979799 | None:intergenic | 35.0% | |
| AGATAATTCCTGATGTCTCT+TGG | + | chr5_2:48979897-48979916 | None:intergenic | 35.0% | |
| AGTCATCGCAAGCAAAAAAA+TGG | + | chr5_2:48980166-48980185 | None:intergenic | 35.0% | |
| !!! | TTTTTTTGCTTGCGATGACT+AGG | - | chr5_2:48980166-48980185 | Msa0773680:intron | 35.0% |
| TTGGGGAAAACAACAAAATC+AGG | + | chr5_2:48980383-48980402 | None:intergenic | 35.0% | |
| ! | GATTCAAGTGAGATTTTGTC+TGG | - | chr5_2:48980460-48980479 | Msa0773680:CDS | 35.0% |
| ACTTGACTAAACTGGTAAAC+TGG | - | chr5_2:48980622-48980641 | Msa0773680:five_prime_UTR | 35.0% | |
| ! | TTTTGTGTTTGCGAAAGCGA+GGG | + | chr5_2:48975719-48975738 | None:intergenic | 40.0% |
| ! | TTTTTGTGTTTGCGAAAGCG+AGG | + | chr5_2:48975720-48975739 | None:intergenic | 40.0% |
| CGCTTCTCAAATTCTCTCTT+TGG | - | chr5_2:48975784-48975803 | Msa0773680:intron | 40.0% | |
| ATTGGTACTGTGGTGTTCAA+AGG | + | chr5_2:48975844-48975863 | None:intergenic | 40.0% | |
| CAAATTCAGTACGAAACGCA+CGG | - | chr5_2:48975922-48975941 | Msa0773680:three_prime_UTR | 40.0% | |
| ATTGAGAATCGAACCTTAGC+AGG | + | chr5_2:48976084-48976103 | None:intergenic | 40.0% | |
| !! | TCAATCGGTGTTGTTACTGT+TGG | - | chr5_2:48976301-48976320 | Msa0773680:intron | 40.0% |
| !! | CAATCGGTGTTGTTACTGTT+GGG | - | chr5_2:48976302-48976321 | Msa0773680:intron | 40.0% |
| GGGAAGTAAATACTAGTGAG+TGG | - | chr5_2:48976494-48976513 | Msa0773680:intron | 40.0% | |
| !! | GTGATTAATTTGCCGATCTG+TGG | - | chr5_2:48976526-48976545 | Msa0773680:intron | 40.0% |
| CTTAGGTCAACAATACCTGT+AGG | - | chr5_2:48976564-48976583 | Msa0773680:intron | 40.0% | |
| GTCAACAATACCTGTAGGTT+AGG | - | chr5_2:48976569-48976588 | Msa0773680:intron | 40.0% | |
| CAACAATACCTGTAGGTTAG+GGG | - | chr5_2:48976571-48976590 | Msa0773680:intron | 40.0% | |
| CTTTATATCCCCTAACCTAC+AGG | + | chr5_2:48976582-48976601 | None:intergenic | 40.0% | |
| TAGGGGATATAAAGATGGCT+TGG | - | chr5_2:48976588-48976607 | Msa0773680:intron | 40.0% | |
| !! | GATATAAAGATGGCTTGGTG+TGG | - | chr5_2:48976593-48976612 | Msa0773680:intron | 40.0% |
| ATATCAGGATGTATCCGTGT+CGG | + | chr5_2:48976777-48976796 | None:intergenic | 40.0% | |
| GGATACATCCTGATATGTAC+CGG | - | chr5_2:48976781-48976800 | Msa0773680:intron | 40.0% | |
| GATACATCCTGATATGTACC+GGG | - | chr5_2:48976782-48976801 | Msa0773680:intron | 40.0% | |
| ATGATAAGGATACGGCGATA+TGG | + | chr5_2:48977099-48977118 | None:intergenic | 40.0% | |
| !! | AATTCTTTGGGTTTTGGTGC+AGG | - | chr5_2:48977184-48977203 | Msa0773680:intron | 40.0% |
| ATCGAGAAGCCTCATTACTT+AGG | - | chr5_2:48977243-48977262 | Msa0773680:CDS | 40.0% | |
| AAGCCTCATTACTTAGGTTC+CGG | - | chr5_2:48977249-48977268 | Msa0773680:CDS | 40.0% | |
| ATCTTTCTTTCCTCTTCTGC+CGG | + | chr5_2:48977271-48977290 | None:intergenic | 40.0% | |
| TAAGCTTAAAATGCAAGCCC+CGG | + | chr5_2:48977360-48977379 | None:intergenic | 40.0% | |
| ! | ATCGTGTTTTCTTTGCATCC+AGG | - | chr5_2:48977587-48977606 | Msa0773680:intron | 40.0% |
| !!! | CATTTTGAAGTGGCATAGGA+TGG | - | chr5_2:48977753-48977772 | Msa0773680:intron | 40.0% |
| ! | TAGGATGGTAGATTTTACGG+TGG | - | chr5_2:48977768-48977787 | Msa0773680:intron | 40.0% |
| ! | AGGATGGTAGATTTTACGGT+GGG | - | chr5_2:48977769-48977788 | Msa0773680:intron | 40.0% |
| GACCAGGTTCTCAATAGTAT+AGG | + | chr5_2:48977895-48977914 | None:intergenic | 40.0% | |
| CCTCCACAATTAAAAAGACC+AGG | + | chr5_2:48977911-48977930 | None:intergenic | 40.0% | |
| !! | CCTGGTCTTTTTAATTGTGG+AGG | - | chr5_2:48977908-48977927 | Msa0773680:intron | 40.0% |
| ACCAAGGACACCAATCAAAA+GGG | + | chr5_2:48978012-48978031 | None:intergenic | 40.0% | |
| AACCAAGGACACCAATCAAA+AGG | + | chr5_2:48978013-48978032 | None:intergenic | 40.0% | |
| ACTAGTTGACCGAGAATTTG+AGG | - | chr5_2:48978126-48978145 | Msa0773680:intron | 40.0% | |
| ! | CATACCAGAACTCTTTTGAC+AGG | + | chr5_2:48978174-48978193 | None:intergenic | 40.0% |
| ! | CTGTCAAAAGAGTTCTGGTA+TGG | - | chr5_2:48978172-48978191 | Msa0773680:intron | 40.0% |
| GGGAATGTTGTTCTTTGACT+AGG | + | chr5_2:48978358-48978377 | None:intergenic | 40.0% | |
| ACAACATTCCCCATGTATCT+TGG | - | chr5_2:48978367-48978386 | Msa0773680:intron | 40.0% | |
| TCATGCATCCAAGATACATG+GGG | + | chr5_2:48978378-48978397 | None:intergenic | 40.0% | |
| ATAATGCCTTGTGACATGCT+TGG | - | chr5_2:48978443-48978462 | Msa0773680:intron | 40.0% | |
| ! | GCATCAAGTTTTCTCTTCAG+TGG | - | chr5_2:48978940-48978959 | Msa0773680:intron | 40.0% |
| ! | CAAGTTTTCTCTTCAGTGGA+AGG | - | chr5_2:48978944-48978963 | Msa0773680:intron | 40.0% |
| CAAAATCAACCCCAATGATG+CGG | - | chr5_2:48979039-48979058 | Msa0773680:CDS | 40.0% | |
| TCCAATGCAATGAAGGAACA+GGG | + | chr5_2:48979243-48979262 | None:intergenic | 40.0% | |
| TTCCAATGCAATGAAGGAAC+AGG | + | chr5_2:48979244-48979263 | None:intergenic | 40.0% | |
| AGCTAGTGGTGTATAATGTC+TGG | - | chr5_2:48979564-48979583 | Msa0773680:intron | 40.0% | |
| ACCAAGACCATTGTCAAAAG+GGG | + | chr5_2:48979844-48979863 | None:intergenic | 40.0% | |
| GACCAAGACCATTGTCAAAA+GGG | + | chr5_2:48979845-48979864 | None:intergenic | 40.0% | |
| AGACCAAGACCATTGTCAAA+AGG | + | chr5_2:48979846-48979865 | None:intergenic | 40.0% | |
| ! | ATGGTCTTGGTCTATTCTAC+AGG | - | chr5_2:48979853-48979872 | Msa0773680:intron | 40.0% |
| ! | TGGTCTTGGTCTATTCTACA+GGG | - | chr5_2:48979854-48979873 | Msa0773680:intron | 40.0% |
| ATTCCTGATGTCTCTTGGAA+AGG | + | chr5_2:48979892-48979911 | None:intergenic | 40.0% | |
| GAAAGAAATACCTGCTCAAC+AGG | + | chr5_2:48979926-48979945 | None:intergenic | 40.0% | |
| GTTGTAGATGGTTGCTCAAT+AGG | + | chr5_2:48980251-48980270 | None:intergenic | 40.0% | |
| TTTGTGTTTGCGAAAGCGAG+GGG | + | chr5_2:48975718-48975737 | None:intergenic | 45.0% | |
| !! | TGAGAGTGTTCGTACATTGG+TGG | + | chr5_2:48975820-48975839 | None:intergenic | 45.0% |
| !! | GGTTGAGAGTGTTCGTACAT+TGG | + | chr5_2:48975823-48975842 | None:intergenic | 45.0% |
| ! | TCCAACTCCGATGCTGTTTA+CGG | - | chr5_2:48975955-48975974 | Msa0773680:three_prime_UTR | 45.0% |
| GGTGCCTCAACAAAGTTTGA+GGG | - | chr5_2:48976358-48976377 | Msa0773680:intron | 45.0% | |
| ACCACCCTCAAACTTTGTTG+AGG | + | chr5_2:48976365-48976384 | None:intergenic | 45.0% | |
| GCATTTAGCAAGCCACAGAT+CGG | + | chr5_2:48976541-48976560 | None:intergenic | 45.0% | |
| !! | GGCTTGCTAAATGCTAGCTT+AGG | - | chr5_2:48976547-48976566 | Msa0773680:intron | 45.0% |
| !! | CCAAATATCGGTTTCCGACA+CGG | - | chr5_2:48976760-48976779 | Msa0773680:intron | 45.0% |
| ATACTGTCCCGGTACATATC+AGG | + | chr5_2:48976792-48976811 | None:intergenic | 45.0% | |
| !! | GGTTTTGGTGCAGGAATCAA+TGG | - | chr5_2:48977193-48977212 | Msa0773680:intron | 45.0% |
| TACGTCAAGAAGTTGCACTC+AGG | - | chr5_2:48977318-48977337 | Msa0773680:intron | 45.0% | |
| AGGTCCGATAACTATCCTAC+CGG | - | chr5_2:48977338-48977357 | Msa0773680:intron | 45.0% | |
| ! | TCTGTTAGCAAGCTGGTCTA+CGG | - | chr5_2:48977545-48977564 | Msa0773680:CDS | 45.0% |
| GTTGGCATTTAGGCTTGACT+TGG | - | chr5_2:48977661-48977680 | Msa0773680:intron | 45.0% | |
| TCAAGACAGACCATATGTGC+TGG | - | chr5_2:48977695-48977714 | Msa0773680:intron | 45.0% | |
| CTGTGATAGACCAGCACATA+TGG | + | chr5_2:48977708-48977727 | None:intergenic | 45.0% | |
| ! | ATGGTAGATTTTACGGTGGG+CGG | - | chr5_2:48977772-48977791 | Msa0773680:intron | 45.0% |
| GTTGCCTGTCAAAAGAGTTC+TGG | - | chr5_2:48978167-48978186 | Msa0773680:intron | 45.0% | |
| GTTCTTTGACTAGGGGAAGA+AGG | + | chr5_2:48978349-48978368 | None:intergenic | 45.0% | |
| CATACACCAAGCATGTCACA+AGG | + | chr5_2:48978452-48978471 | None:intergenic | 45.0% | |
| ATGTAGGATGCAGCGAAAGA+AGG | - | chr5_2:48978721-48978740 | Msa0773680:intron | 45.0% | |
| TGTAGGATGCAGCGAAAGAA+GGG | - | chr5_2:48978722-48978741 | Msa0773680:intron | 45.0% | |
| CAAGATGGGTCCAATAGTTG+TGG | - | chr5_2:48978767-48978786 | Msa0773680:intron | 45.0% | |
| CTGGTCTGTACCACAACTAT+TGG | + | chr5_2:48978780-48978799 | None:intergenic | 45.0% | |
| CAATAGTTGTGGTACAGACC+AGG | - | chr5_2:48978778-48978797 | Msa0773680:intron | 45.0% | |
| ! | TCACGAGATTTCTGATGGAC+TGG | + | chr5_2:48978819-48978838 | None:intergenic | 45.0% |
| CAAGCTCACGAGATTTCTGA+TGG | + | chr5_2:48978824-48978843 | None:intergenic | 45.0% | |
| ! | CAAGCATTGCAAAGTGACCT+TGG | + | chr5_2:48979080-48979099 | None:intergenic | 45.0% |
| ! | AGGTCACTTTGCAATGCTTG+TGG | - | chr5_2:48979080-48979099 | Msa0773680:CDS | 45.0% |
| ! | GGTCACTTTGCAATGCTTGT+GGG | - | chr5_2:48979081-48979100 | Msa0773680:CDS | 45.0% |
| ! | CAATGCTTGTGGGCTTTTCT+GGG | - | chr5_2:48979091-48979110 | Msa0773680:CDS | 45.0% |
| ! | TGGGCTTTTCTGGGCAAATA+GGG | - | chr5_2:48979100-48979119 | Msa0773680:CDS | 45.0% |
| ! | CTTTTCTGGGCAAATAGGGT+AGG | - | chr5_2:48979104-48979123 | Msa0773680:CDS | 45.0% |
| TGCAATGAAGGAACAGGGAA+GGG | + | chr5_2:48979238-48979257 | None:intergenic | 45.0% | |
| ATGCAATGAAGGAACAGGGA+AGG | + | chr5_2:48979239-48979258 | None:intergenic | 45.0% | |
| TCCCTGTTCCTTCATTGCAT+TGG | - | chr5_2:48979239-48979258 | Msa0773680:intron | 45.0% | |
| TGGTGTATAATGTCTGGCAC+TGG | - | chr5_2:48979570-48979589 | Msa0773680:intron | 45.0% | |
| ! | ACAGTTCCCCCTTTTGACAA+TGG | - | chr5_2:48979834-48979853 | Msa0773680:intron | 45.0% |
| CCAAGACCATTGTCAAAAGG+GGG | + | chr5_2:48979843-48979862 | None:intergenic | 45.0% | |
| AGACCTTTCCAAGAGACATC+AGG | - | chr5_2:48979886-48979905 | Msa0773680:intron | 45.0% | |
| ATCTACTGTACCTGTTGAGC+AGG | - | chr5_2:48979913-48979932 | Msa0773680:intron | 45.0% | |
| !!! | GGAAATAGGTTGTTTTGGGC+TGG | - | chr5_2:48979993-48980012 | Msa0773680:CDS | 45.0% |
| !! | TGCGATGACTAGGTTGATCA+AGG | - | chr5_2:48980176-48980195 | Msa0773680:intron | 45.0% |
| CAAGGTAACAACTCAGACTG+TGG | - | chr5_2:48980194-48980213 | Msa0773680:intron | 45.0% | |
| TAGGAGTGATGTTGTGTGCA+GGG | + | chr5_2:48980232-48980251 | None:intergenic | 45.0% | |
| ATAGGAGTGATGTTGTGTGC+AGG | + | chr5_2:48980233-48980252 | None:intergenic | 45.0% | |
| TTGGATGCACAGCTGTCTAT+TGG | - | chr5_2:48980303-48980322 | Msa0773680:CDS | 45.0% | |
| !!! | TTTATTTTTTTTAAATAGAT+TGG | - | chr5_2:48976830-48976849 | Msa0773680:intron | 5.0% |
| !!! | AATTTTTTATTAAAGTATTT+TGG | - | chr5_2:48977048-48977067 | Msa0773680:intron | 5.0% |
| ! | GAAGAGAGTGCAGAAGGTGT+AGG | + | chr5_2:48975695-48975714 | None:intergenic | 50.0% |
| TTGTGTTTGCGAAAGCGAGG+GGG | + | chr5_2:48975717-48975736 | None:intergenic | 50.0% | |
| !! | TTGATGTTGAGCGTCGATGC+CGG | + | chr5_2:48975905-48975924 | None:intergenic | 50.0% |
| TCAGTACGAAACGCACGGTA+TGG | - | chr5_2:48975927-48975946 | Msa0773680:three_prime_UTR | 50.0% | |
| ! | TCCGATGCTGTTTACGGCAA+CGG | - | chr5_2:48975961-48975980 | Msa0773680:three_prime_UTR | 50.0% |
| TGACTCTGTTACGCCTGCTA+AGG | - | chr5_2:48976068-48976087 | Msa0773680:CDS | 50.0% | |
| !! | TCGGTGTTGTTACTGTTGGG+TGG | - | chr5_2:48976305-48976324 | Msa0773680:intron | 50.0% |
| GGATGTGAACAACCTGATGC+TGG | - | chr5_2:48976326-48976345 | Msa0773680:intron | 50.0% | |
| ACCTGATGCTGGTGTGAATG+CGG | - | chr5_2:48976337-48976356 | Msa0773680:intron | 50.0% | |
| CGGTGCCTCAACAAAGTTTG+AGG | - | chr5_2:48976357-48976376 | Msa0773680:intron | 50.0% | |
| GCCTCAACAAAGTTTGAGGG+TGG | - | chr5_2:48976361-48976380 | Msa0773680:intron | 50.0% | |
| CCGTGTCGGAAACCGATATT+TGG | + | chr5_2:48976763-48976782 | None:intergenic | 50.0% | |
| CTGCCGGAACCTAAGTAATG+AGG | + | chr5_2:48977255-48977274 | None:intergenic | 50.0% | |
| TACTTAGGTTCCGGCAGAAG+AGG | - | chr5_2:48977258-48977277 | Msa0773680:CDS | 50.0% | |
| GGTCCGATAACTATCCTACC+GGG | - | chr5_2:48977339-48977358 | Msa0773680:intron | 50.0% | |
| GTCCGATAACTATCCTACCG+GGG | - | chr5_2:48977340-48977359 | Msa0773680:intron | 50.0% | |
| AGCCCCGGTAGGATAGTTAT+CGG | + | chr5_2:48977345-48977364 | None:intergenic | 50.0% | |
| CTTAAAATGCAAGCCCCGGT+AGG | + | chr5_2:48977356-48977375 | None:intergenic | 50.0% | |
| ! | CTGTTAGCAAGCTGGTCTAC+GGG | - | chr5_2:48977546-48977565 | Msa0773680:CDS | 50.0% |
| ! | TGGTAGATTTTACGGTGGGC+GGG | - | chr5_2:48977773-48977792 | Msa0773680:intron | 50.0% |
| !! | GCCCTTTTGATTGGTGTCCT+TGG | - | chr5_2:48978008-48978027 | Msa0773680:intron | 50.0% |
| TACAGACCAGGATTCTAGCC+AGG | - | chr5_2:48978790-48978809 | Msa0773680:intron | 50.0% | |
| !! | TTTCTGATGGACTGGCATCC+TGG | + | chr5_2:48978811-48978830 | None:intergenic | 50.0% |
| CAAAGTGACCTTGGACCAGA+TGG | + | chr5_2:48979071-48979090 | None:intergenic | 50.0% | |
| ! | GCAATGCTTGTGGGCTTTTC+TGG | - | chr5_2:48979090-48979109 | Msa0773680:CDS | 50.0% |
| ! | GTGGGCTTTTCTGGGCAAAT+AGG | - | chr5_2:48979099-48979118 | Msa0773680:CDS | 50.0% |
| AGGGTAGGTGTTCTCTCCAA+AGG | - | chr5_2:48979119-48979138 | Msa0773680:intron | 50.0% | |
| ! | CCCCCTTTTGACAATGGTCT+TGG | - | chr5_2:48979840-48979859 | Msa0773680:intron | 50.0% |
| ACCACAGTACCAATCACCGC+CGG | - | chr5_2:48975850-48975869 | Msa0773680:three_prime_UTR | 55.0% | |
| ! | GCCGTAAACAGCATCGGAGT+TGG | + | chr5_2:48975959-48975978 | None:intergenic | 55.0% |
| GCCGTTGCCGTAAACAGCAT+CGG | + | chr5_2:48975965-48975984 | None:intergenic | 55.0% | |
| ! | GATGCTGTTTACGGCAACGG+CGG | - | chr5_2:48975964-48975983 | Msa0773680:three_prime_UTR | 55.0% |
| ! | CAGCTTACGCTGTCGTTTCG+TGG | - | chr5_2:48976030-48976049 | Msa0773680:three_prime_UTR | 55.0% |
| ACCGCATTCACACCAGCATC+AGG | + | chr5_2:48976341-48976360 | None:intergenic | 55.0% | |
| CTATCATGGGCAGCCGTATC+CGG | + | chr5_2:48976888-48976907 | None:intergenic | 55.0% | |
| TCCTGCTGACAAGTCCTCGT+AGG | - | chr5_2:48978196-48978215 | Msa0773680:intron | 55.0% | |
| CCTGCTGACAAGTCCTCGTA+GGG | - | chr5_2:48978197-48978216 | Msa0773680:intron | 55.0% | |
| TGACAAGTCCTCGTAGGGCA+CGG | - | chr5_2:48978202-48978221 | Msa0773680:intron | 55.0% | |
| TTCTTAGTCCGTGCCCTACG+AGG | + | chr5_2:48978213-48978232 | None:intergenic | 55.0% | |
| TGGCATCCTGGCTAGAATCC+TGG | + | chr5_2:48978799-48978818 | None:intergenic | 55.0% | |
| ! | GAGGGGGAAGAGAGTGCAGA+AGG | + | chr5_2:48975701-48975720 | None:intergenic | 60.0% |
| !! | GGCTTGGTGTGGGAGAGTTC+AGG | - | chr5_2:48976604-48976623 | Msa0773680:intron | 60.0% |
| GGTGTGGGAGAGTTCAGGAG+TGG | - | chr5_2:48976609-48976628 | Msa0773680:intron | 60.0% | |
| CCCTACGAGGACTTGTCAGC+AGG | + | chr5_2:48978200-48978219 | None:intergenic | 60.0% | |
| TCAACCCCAATGATGCGGCG+AGG | - | chr5_2:48979044-48979063 | Msa0773680:CDS | 60.0% | |
| CAACCCCAATGATGCGGCGA+GGG | - | chr5_2:48979045-48979064 | Msa0773680:CDS | 60.0% | |
| ATGGCCCTCGCCGCATCATT+GGG | + | chr5_2:48979052-48979071 | None:intergenic | 60.0% | |
| GCCGGCGGTGATTGGTACTG+TGG | + | chr5_2:48975854-48975873 | None:intergenic | 65.0% | |
| TCGCTTTCGCCGGCGGTGAT+TGG | + | chr5_2:48975862-48975881 | None:intergenic | 65.0% | |
| ! | GGAACCGTCGTCGCTTTCGC+CGG | + | chr5_2:48975872-48975891 | None:intergenic | 65.0% |
| GGCGAAAGCGACGACGGTTC+CGG | - | chr5_2:48975871-48975890 | Msa0773680:three_prime_UTR | 65.0% | |
| !! | TTGAGCGTCGATGCCGGCGT+CGG | + | chr5_2:48975899-48975918 | None:intergenic | 65.0% |
| TGGCCCTCGCCGCATCATTG+GGG | + | chr5_2:48979051-48979070 | None:intergenic | 65.0% | |
| GATGGCCCTCGCCGCATCAT+TGG | + | chr5_2:48979053-48979072 | None:intergenic | 65.0% | |
| ATGATGCGGCGAGGGCCATC+TGG | - | chr5_2:48979053-48979072 | Msa0773680:CDS | 65.0% | |
| ACCGCCGGCGAAAGCGACGA+CGG | - | chr5_2:48975865-48975884 | Msa0773680:three_prime_UTR | 70.0% | |
| ! | ACCGTCGTCGCTTTCGCCGG+CGG | + | chr5_2:48975869-48975888 | None:intergenic | 70.0% |
| !! | TGAGCGTCGATGCCGGCGTC+GGG | + | chr5_2:48975898-48975917 | None:intergenic | 70.0% |
| GGCGAGGGCCATCTGGTCCA+AGG | - | chr5_2:48979060-48979079 | Msa0773680:CDS | 70.0% | |
| GACGGTTCCGGTCCCGACGC+CGG | - | chr5_2:48975883-48975902 | Msa0773680:three_prime_UTR | 75.0% | |
| ! | GTCGATGCCGGCGTCGGGAC+CGG | + | chr5_2:48975893-48975912 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 48975685 | 48980646 | 48975685 | ID=Msa0773680;Name=Msa0773680 |
| chr5_2 | mRNA | 48975685 | 48980646 | 48975685 | ID=Msa0773680-mRNA-1;Parent=Msa0773680;Name=Msa0773680-mRNA-1;_AED=0.05;_eAED=0.05;_QI=126|1|1|1|0.85|0.75|8|305|287 |
| chr5_2 | exon | 48975685 | 48975727 | 48975685 | ID=Msa0773680-mRNA-1:exon:14649;Parent=Msa0773680-mRNA-1 |
| chr5_2 | exon | 48975789 | 48976143 | 48975789 | ID=Msa0773680-mRNA-1:exon:14648;Parent=Msa0773680-mRNA-1 |
| chr5_2 | exon | 48976397 | 48976456 | 48976397 | ID=Msa0773680-mRNA-1:exon:14647;Parent=Msa0773680-mRNA-1 |
| chr5_2 | exon | 48977210 | 48977315 | 48977210 | ID=Msa0773680-mRNA-1:exon:14646;Parent=Msa0773680-mRNA-1 |
| chr5_2 | exon | 48977497 | 48977604 | 48977497 | ID=Msa0773680-mRNA-1:exon:14645;Parent=Msa0773680-mRNA-1 |
| chr5_2 | exon | 48978992 | 48979125 | 48978992 | ID=Msa0773680-mRNA-1:exon:14644;Parent=Msa0773680-mRNA-1 |
| chr5_2 | exon | 48979949 | 48980032 | 48979949 | ID=Msa0773680-mRNA-1:exon:14643;Parent=Msa0773680-mRNA-1 |
| chr5_2 | exon | 48980242 | 48980646 | 48980242 | ID=Msa0773680-mRNA-1:exon:14642;Parent=Msa0773680-mRNA-1 |
| chr5_2 | five_prime_UTR | 48980521 | 48980646 | 48980521 | ID=Msa0773680-mRNA-1:five_prime_utr;Parent=Msa0773680-mRNA-1 |
| chr5_2 | CDS | 48980242 | 48980520 | 48980242 | ID=Msa0773680-mRNA-1:cds;Parent=Msa0773680-mRNA-1 |
| chr5_2 | CDS | 48979949 | 48980032 | 48979949 | ID=Msa0773680-mRNA-1:cds;Parent=Msa0773680-mRNA-1 |
| chr5_2 | CDS | 48978992 | 48979125 | 48978992 | ID=Msa0773680-mRNA-1:cds;Parent=Msa0773680-mRNA-1 |
| chr5_2 | CDS | 48977497 | 48977604 | 48977497 | ID=Msa0773680-mRNA-1:cds;Parent=Msa0773680-mRNA-1 |
| chr5_2 | CDS | 48977210 | 48977315 | 48977210 | ID=Msa0773680-mRNA-1:cds;Parent=Msa0773680-mRNA-1 |
| chr5_2 | CDS | 48976397 | 48976456 | 48976397 | ID=Msa0773680-mRNA-1:cds;Parent=Msa0773680-mRNA-1 |
| chr5_2 | CDS | 48976051 | 48976143 | 48976051 | ID=Msa0773680-mRNA-1:cds;Parent=Msa0773680-mRNA-1 |
| chr5_2 | three_prime_UTR | 48975789 | 48976050 | 48975789 | ID=Msa0773680-mRNA-1:three_prime_utr;Parent=Msa0773680-mRNA-1 |
| chr5_2 | three_prime_UTR | 48975685 | 48975727 | 48975685 | ID=Msa0773680-mRNA-1:three_prime_utr;Parent=Msa0773680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
