Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0775210 | XP_003615578.1 | 96.417 | 307 | 11 | 0 | 1 | 307 | 1 | 307 | 0.0 | 630 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0775210 | sp|Q8S9H7|DIV_ANTMA | 58.750 | 320 | 102 | 11 | 5 | 307 | 1 | 307 | 3.43e-115 | 337 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0775210 | G7K698 | 96.417 | 307 | 11 | 0 | 1 | 307 | 1 | 307 | 0.0 | 630 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0775210 | TF | MYB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0775210 | MtrunA17_Chr5g0429521 | 96.417 | 307 | 11 | 0 | 1 | 307 | 1 | 307 | 0.0 | 630 |
| Msa0775210 | MtrunA17_Chr3g0104071 | 66.565 | 329 | 81 | 9 | 1 | 307 | 1 | 322 | 1.01e-149 | 422 |
| Msa0775210 | MtrunA17_Chr7g0241761 | 58.654 | 312 | 114 | 8 | 1 | 303 | 7 | 312 | 2.43e-117 | 340 |
| Msa0775210 | MtrunA17_Chr5g0436501 | 61.881 | 202 | 70 | 3 | 4 | 203 | 2 | 198 | 1.38e-85 | 258 |
| Msa0775210 | MtrunA17_Chr1g0162081 | 47.907 | 215 | 82 | 4 | 22 | 224 | 5 | 201 | 1.35e-58 | 190 |
| Msa0775210 | MtrunA17_Chr1g0210471 | 50.847 | 177 | 78 | 2 | 27 | 200 | 22 | 192 | 5.11e-57 | 184 |
| Msa0775210 | MtrunA17_Chr4g0062741 | 47.549 | 204 | 70 | 4 | 29 | 200 | 8 | 206 | 2.84e-53 | 176 |
| Msa0775210 | MtrunA17_Chr8g0365011 | 36.073 | 219 | 103 | 6 | 23 | 223 | 2 | 201 | 1.94e-38 | 137 |
| Msa0775210 | MtrunA17_Chr4g0055931 | 48.993 | 149 | 52 | 4 | 90 | 235 | 57 | 184 | 1.27e-32 | 122 |
| Msa0775210 | MtrunA17_Chr6g0488471 | 53.509 | 114 | 48 | 1 | 126 | 239 | 91 | 199 | 2.55e-32 | 121 |
| Msa0775210 | MtrunA17_Chr2g0331031 | 73.239 | 71 | 19 | 0 | 127 | 197 | 104 | 174 | 9.26e-32 | 121 |
| Msa0775210 | MtrunA17_Chr8g0389241 | 69.333 | 75 | 22 | 1 | 123 | 197 | 96 | 169 | 2.00e-30 | 115 |
| Msa0775210 | MtrunA17_Chr5g0415191 | 70.513 | 78 | 23 | 0 | 126 | 203 | 96 | 173 | 9.81e-29 | 112 |
| Msa0775210 | MtrunA17_Chr4g0059701 | 58.000 | 100 | 41 | 1 | 103 | 202 | 56 | 154 | 5.10e-27 | 107 |
| Msa0775210 | MtrunA17_Chr3g0135671 | 47.967 | 123 | 50 | 4 | 129 | 240 | 88 | 207 | 1.70e-25 | 101 |
| Msa0775210 | MtrunA17_Chr5g0440731 | 53.846 | 91 | 38 | 2 | 124 | 211 | 97 | 186 | 1.18e-24 | 100 |
| Msa0775210 | MtrunA17_Chr3g0092621 | 64.179 | 67 | 24 | 0 | 132 | 198 | 84 | 150 | 3.02e-24 | 96.7 |
| Msa0775210 | MtrunA17_Chr5g0440741 | 59.259 | 81 | 29 | 2 | 134 | 211 | 102 | 181 | 5.94e-24 | 99.0 |
| Msa0775210 | MtrunA17_Chr8g0364741 | 37.500 | 128 | 69 | 3 | 26 | 149 | 7 | 127 | 1.83e-23 | 93.2 |
| Msa0775210 | MtrunA17_Chr5g0432921 | 36.471 | 170 | 88 | 7 | 23 | 188 | 15 | 168 | 1.02e-22 | 94.0 |
| Msa0775210 | MtrunA17_Chr5g0409841 | 55.814 | 86 | 35 | 2 | 128 | 211 | 88 | 172 | 1.02e-22 | 94.4 |
| Msa0775210 | MtrunA17_Chr5g0432941 | 35.673 | 171 | 87 | 6 | 23 | 188 | 16 | 168 | 6.32e-22 | 92.0 |
| Msa0775210 | MtrunA17_Chr5g0409831 | 60.526 | 76 | 27 | 1 | 128 | 200 | 73 | 148 | 2.92e-20 | 87.4 |
| Msa0775210 | MtrunA17_Chr6g0452791 | 66.129 | 62 | 20 | 1 | 132 | 192 | 80 | 141 | 3.01e-20 | 85.9 |
| Msa0775210 | MtrunA17_Chr1g0155181 | 49.296 | 71 | 36 | 0 | 26 | 96 | 4 | 74 | 1.45e-19 | 81.6 |
| Msa0775210 | MtrunA17_Chr5g0404101 | 44.000 | 75 | 42 | 0 | 17 | 91 | 7 | 81 | 2.34e-19 | 81.3 |
| Msa0775210 | MtrunA17_Chr3g0144631 | 52.308 | 65 | 31 | 0 | 29 | 93 | 16 | 80 | 5.45e-19 | 79.7 |
| Msa0775210 | MtrunA17_Chr8g0373131 | 51.389 | 72 | 34 | 1 | 25 | 96 | 1 | 71 | 5.58e-19 | 79.7 |
| Msa0775210 | MtrunA17_Chr8g0373111 | 51.389 | 72 | 34 | 1 | 25 | 96 | 1 | 71 | 5.67e-19 | 79.7 |
| Msa0775210 | MtrunA17_Chr8g0373121 | 51.389 | 72 | 34 | 1 | 25 | 96 | 1 | 71 | 5.67e-19 | 79.7 |
| Msa0775210 | MtrunA17_Chr8g0364731 | 52.381 | 84 | 35 | 2 | 141 | 219 | 10 | 93 | 9.60e-19 | 82.4 |
| Msa0775210 | MtrunA17_Chr3g0141601 | 54.545 | 66 | 30 | 0 | 26 | 91 | 4 | 69 | 1.13e-18 | 79.3 |
| Msa0775210 | MtrunA17_Chr6g0449111 | 47.222 | 72 | 38 | 0 | 26 | 97 | 7 | 78 | 1.49e-17 | 75.9 |
| Msa0775210 | MtrunA17_Chr8g0373101 | 49.231 | 65 | 32 | 1 | 25 | 89 | 1 | 64 | 7.34e-16 | 71.2 |
| Msa0775210 | MtrunA17_Chr5g0404301 | 50.820 | 61 | 29 | 1 | 29 | 89 | 4 | 63 | 4.17e-15 | 68.9 |
| Msa0775210 | MtrunA17_Chr3g0081631 | 50.746 | 67 | 32 | 1 | 26 | 91 | 7 | 73 | 6.00e-15 | 69.3 |
| Msa0775210 | MtrunA17_Chr3g0113121 | 37.879 | 132 | 72 | 2 | 80 | 201 | 40 | 171 | 2.31e-14 | 70.9 |
| Msa0775210 | MtrunA17_Chr7g0255841 | 53.333 | 60 | 28 | 0 | 32 | 91 | 15 | 74 | 2.39e-14 | 67.8 |
| Msa0775210 | MtrunA17_Chr1g0192061 | 52.055 | 73 | 30 | 2 | 134 | 202 | 63 | 134 | 2.09e-13 | 67.8 |
| Msa0775210 | MtrunA17_Chr3g0141641 | 44.444 | 63 | 35 | 0 | 29 | 91 | 3 | 65 | 2.22e-12 | 62.4 |
| Msa0775210 | MtrunA17_Chr8g0370121 | 43.056 | 72 | 36 | 2 | 129 | 196 | 97 | 167 | 1.52e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0775210 | AT2G38090.1 | 65.877 | 211 | 53 | 3 | 5 | 201 | 5 | 210 | 4.24e-99 | 293 |
| Msa0775210 | AT5G58900.1 | 58.214 | 280 | 84 | 8 | 5 | 267 | 1 | 264 | 1.00e-96 | 287 |
| Msa0775210 | AT5G01200.1 | 61.692 | 201 | 60 | 5 | 16 | 201 | 17 | 215 | 2.93e-78 | 239 |
| Msa0775210 | AT5G05790.2 | 63.021 | 192 | 63 | 4 | 14 | 201 | 13 | 200 | 3.98e-78 | 239 |
| Msa0775210 | AT5G05790.1 | 63.021 | 192 | 63 | 4 | 14 | 201 | 13 | 200 | 3.98e-78 | 239 |
| Msa0775210 | AT3G11280.2 | 67.052 | 173 | 48 | 2 | 29 | 201 | 33 | 196 | 4.90e-78 | 239 |
| Msa0775210 | AT3G11280.1 | 67.052 | 173 | 48 | 2 | 29 | 201 | 33 | 196 | 4.90e-78 | 239 |
| Msa0775210 | AT5G08520.1 | 51.136 | 176 | 81 | 3 | 29 | 200 | 12 | 186 | 1.68e-54 | 179 |
| Msa0775210 | AT1G49010.1 | 50.739 | 203 | 73 | 5 | 23 | 200 | 2 | 202 | 4.39e-54 | 179 |
| Msa0775210 | AT5G04760.1 | 42.342 | 222 | 115 | 3 | 26 | 244 | 3 | 214 | 2.09e-50 | 166 |
| Msa0775210 | AT5G23650.1 | 38.117 | 223 | 109 | 4 | 18 | 222 | 2 | 213 | 1.29e-41 | 147 |
| Msa0775210 | AT5G47390.1 | 60.185 | 108 | 35 | 3 | 92 | 197 | 60 | 161 | 4.30e-32 | 122 |
| Msa0775210 | AT3G10580.2 | 42.135 | 178 | 79 | 7 | 23 | 197 | 2 | 158 | 7.65e-32 | 119 |
| Msa0775210 | AT3G10580.1 | 42.135 | 178 | 79 | 7 | 23 | 197 | 2 | 158 | 1.13e-31 | 119 |
| Msa0775210 | AT4G09450.1 | 36.449 | 214 | 110 | 5 | 28 | 241 | 6 | 193 | 1.81e-30 | 114 |
| Msa0775210 | AT5G61620.1 | 47.445 | 137 | 61 | 4 | 127 | 260 | 103 | 231 | 1.62e-28 | 112 |
| Msa0775210 | AT5G56840.1 | 50.000 | 104 | 51 | 1 | 98 | 200 | 57 | 160 | 2.70e-27 | 107 |
| Msa0775210 | AT1G70000.1 | 70.833 | 72 | 21 | 0 | 126 | 197 | 92 | 163 | 1.13e-26 | 105 |
| Msa0775210 | AT1G70000.2 | 70.833 | 72 | 21 | 0 | 126 | 197 | 92 | 163 | 1.13e-26 | 105 |
| Msa0775210 | AT3G16350.1 | 58.763 | 97 | 40 | 0 | 127 | 223 | 132 | 228 | 7.08e-26 | 106 |
| Msa0775210 | AT1G74840.2 | 70.833 | 72 | 21 | 0 | 127 | 198 | 91 | 162 | 5.51e-25 | 100 |
| Msa0775210 | AT1G74840.1 | 70.833 | 72 | 21 | 0 | 127 | 198 | 91 | 162 | 9.00e-25 | 100 |
| Msa0775210 | AT1G19000.2 | 65.789 | 76 | 26 | 0 | 128 | 203 | 98 | 173 | 2.59e-24 | 100 |
| Msa0775210 | AT1G19000.1 | 65.789 | 76 | 26 | 0 | 128 | 203 | 98 | 173 | 2.59e-24 | 100 |
| Msa0775210 | AT1G75250.1 | 58.462 | 65 | 27 | 0 | 29 | 93 | 12 | 76 | 2.06e-21 | 88.2 |
| Msa0775210 | AT1G75250.2 | 58.462 | 65 | 27 | 0 | 29 | 93 | 12 | 76 | 2.61e-21 | 87.0 |
| Msa0775210 | AT3G10590.1 | 35.912 | 181 | 98 | 6 | 26 | 197 | 4 | 175 | 5.06e-21 | 89.4 |
| Msa0775210 | AT2G21650.1 | 52.941 | 68 | 32 | 0 | 29 | 96 | 14 | 81 | 9.28e-18 | 77.4 |
| Msa0775210 | AT4G39250.1 | 49.231 | 65 | 33 | 0 | 29 | 93 | 14 | 78 | 1.67e-16 | 74.3 |
| Msa0775210 | AT1G19510.1 | 51.613 | 62 | 30 | 0 | 32 | 93 | 15 | 76 | 2.13e-15 | 71.2 |
| Msa0775210 | AT2G18328.1 | 52.542 | 59 | 28 | 0 | 33 | 91 | 15 | 73 | 4.61e-13 | 63.9 |
| Msa0775210 | AT4G36570.1 | 56.818 | 44 | 19 | 0 | 29 | 72 | 12 | 55 | 9.66e-12 | 59.7 |
Find 94 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGACATATGTTAAAATTT+TGG | 0.142044 | 5_2:+52029635 | Msa0775210:three_prime_UTR |
| CTTGAAAACTTAGCCCAATT+TGG | 0.159886 | 5_2:-52027478 | None:intergenic |
| TTCTCAACTGCTTTCCAAAT+TGG | 0.186049 | 5_2:+52027464 | Msa0775210:five_prime_UTR |
| AATCAACACTATGGACTTAT+TGG | 0.204334 | 5_2:-52029744 | None:intergenic |
| ATTATTATCTCTTATCTAAT+TGG | 0.242269 | 5_2:-52027668 | None:intergenic |
| TTCTTGGCATATCGACTTAC+AGG | 0.256345 | 5_2:+52029662 | Msa0775210:three_prime_UTR |
| TTAGATTGGGTGAGCAGTTC+TGG | 0.273897 | 5_2:+52028289 | Msa0775210:CDS |
| CACCTTTGCCATACTTCTTT+AGG | 0.307378 | 5_2:-52028908 | None:intergenic |
| TATTTCATAAGACAACTTTC+AGG | 0.314437 | 5_2:+52029002 | Msa0775210:CDS |
| CCTTTCTTCCTTTCCTGCTC+AGG | 0.322349 | 5_2:-52028361 | None:intergenic |
| CTCACCCAATCTAAGGTAAA+AGG | 0.326033 | 5_2:-52028280 | None:intergenic |
| GAAAACTCTAAAATTTGAAT+AGG | 0.330408 | 5_2:-52027917 | None:intergenic |
| TCTCAACTGCTTTCCAAATT+GGG | 0.350224 | 5_2:+52027465 | Msa0775210:five_prime_UTR |
| TCTGGTTATGATGAATTTAG+AGG | 0.373350 | 5_2:+52028307 | Msa0775210:CDS |
| CTACTAGGCCTAAAGAAGTA+TGG | 0.375050 | 5_2:+52028900 | Msa0775210:CDS |
| AAGTTTGTTGTTGCTGCTGC+TGG | 0.378047 | 5_2:-52029157 | None:intergenic |
| GCTGGGTTGATTCCAGTTCC+TGG | 0.382171 | 5_2:+52028238 | Msa0775210:CDS |
| TTGAGGGGAGCGTGCGTTGA+TGG | 0.386009 | 5_2:+52029488 | Msa0775210:three_prime_UTR |
| ACATCACCGACCGTCTTTCC+TGG | 0.388704 | 5_2:-52028169 | None:intergenic |
| AGAACTGCTCACCCAATCTA+AGG | 0.399431 | 5_2:-52028287 | None:intergenic |
| AACATTATTCACATGCATAA+AGG | 0.404368 | 5_2:+52029378 | Msa0775210:CDS |
| TGATAAGATGAAGTGGGAAA+TGG | 0.405855 | 5_2:+52027985 | Msa0775210:exon |
| TATGATGAATTTAGAGGAAG+TGG | 0.409816 | 5_2:+52028313 | Msa0775210:CDS |
| GTTGTGATGAATGTTGCATT+TGG | 0.410990 | 5_2:-52029358 | None:intergenic |
| TGATGTGATGAGACAATATA+AGG | 0.419767 | 5_2:+52028186 | Msa0775210:CDS |
| AGAAGTATGGCAAAGGTGAT+TGG | 0.420618 | 5_2:+52028913 | Msa0775210:CDS |
| AAAACTCTAAAATTTGAATA+GGG | 0.421518 | 5_2:-52027916 | None:intergenic |
| TGGTGAAGTGGATCTATTAT+TGG | 0.427162 | 5_2:-52029111 | None:intergenic |
| CAAGACCAAAATCTTCAAAA+AGG | 0.427744 | 5_2:+52029296 | Msa0775210:CDS |
| AAGCAGTTGAGAAGGAAGAA+AGG | 0.430795 | 5_2:-52027454 | None:intergenic |
| AGCAGTTGAGAAGGAAGAAA+GGG | 0.432424 | 5_2:-52027453 | None:intergenic |
| ATGAAAACTTGTTCATGAGT+TGG | 0.437532 | 5_2:-52029236 | None:intergenic |
| ATTTCTAGTGAAGTTTATCA+TGG | 0.438525 | 5_2:+52029798 | Msa0775210:three_prime_UTR |
| GTTATCTTCCATACACCAAT+TGG | 0.440080 | 5_2:-52028041 | None:intergenic |
| GATGTCTGTAATATAGAAGC+TGG | 0.449562 | 5_2:+52028220 | Msa0775210:CDS |
| CTTATGTTCTGGTGGATTGA+GGG | 0.453667 | 5_2:+52029472 | Msa0775210:three_prime_UTR |
| TTGTGTTCTTCTTCAGTCCA+TGG | 0.457416 | 5_2:-52028388 | None:intergenic |
| CATACACACAAAACTCCAAT+TGG | 0.463612 | 5_2:+52028026 | Msa0775210:CDS |
| GGAGTATTATAACCAGGAAC+TGG | 0.465713 | 5_2:-52028250 | None:intergenic |
| TCTTATGTTCTGGTGGATTG+AGG | 0.471104 | 5_2:+52029471 | Msa0775210:three_prime_UTR |
| GCATGGCTTGCTACTTGAGT+TGG | 0.471843 | 5_2:-52028972 | None:intergenic |
| ACAAAACTCCAATTGGTGTA+TGG | 0.484625 | 5_2:+52028033 | Msa0775210:CDS |
| TATGTGAATATCTTATGTTC+TGG | 0.491831 | 5_2:+52029461 | Msa0775210:three_prime_UTR |
| TCCTGCAGATTATTTCTACT+AGG | 0.501666 | 5_2:+52028885 | Msa0775210:intron |
| AGAGGAAGATAAAGCAGAGA+AGG | 0.513934 | 5_2:-52027859 | None:intergenic |
| TTAGAGCTCCTGAGCAGGAA+AGG | 0.515723 | 5_2:+52028353 | Msa0775210:CDS |
| TAAGATATTCACATATACCT+TGG | 0.516725 | 5_2:-52029453 | None:intergenic |
| TCTAAGGTAAAAGGTGAAGT+AGG | 0.517348 | 5_2:-52028271 | None:intergenic |
| AAGATATTCACATATACCTT+GGG | 0.517678 | 5_2:-52029452 | None:intergenic |
| CCTGAGCAGGAAAGGAAGAA+AGG | 0.521387 | 5_2:+52028361 | Msa0775210:CDS |
| TTTAGTTAGAGCTCCTGAGC+AGG | 0.523673 | 5_2:+52028348 | Msa0775210:CDS |
| AATGATTGAGGTGGGTGAGA+AGG | 0.527301 | 5_2:+52029562 | Msa0775210:three_prime_UTR |
| GAAAACTTGATAAGATGAAG+TGG | 0.527680 | 5_2:+52027978 | Msa0775210:exon |
| TCTTATATCATTGTCAATCA+AGG | 0.528102 | 5_2:-52029600 | None:intergenic |
| TGAGAAGGAAGAAAGGGATA+AGG | 0.530800 | 5_2:-52027447 | None:intergenic |
| CTGCTGGTGTGAAAGTAACA+TGG | 0.532432 | 5_2:-52029141 | None:intergenic |
| GCTACTTTATGCCATCGATC+CGG | 0.541949 | 5_2:-52028136 | None:intergenic |
| TAACAAATAAAACTTTAAAG+AGG | 0.542250 | 5_2:+52029707 | Msa0775210:three_prime_UTR |
| TTATGTTCTGGTGGATTGAG+GGG | 0.544191 | 5_2:+52029473 | Msa0775210:three_prime_UTR |
| ATAAAGATACGCCGGATCGA+TGG | 0.544701 | 5_2:+52028125 | Msa0775210:CDS |
| GTGAATATCTTATGTTCTGG+TGG | 0.545144 | 5_2:+52029464 | Msa0775210:three_prime_UTR |
| GAATAATCAACAAAATGCTA+TGG | 0.547089 | 5_2:+52029205 | Msa0775210:CDS |
| ATTTGGAAAACCATGTTATG+TGG | 0.549103 | 5_2:-52029341 | None:intergenic |
| CATGGGATTCTGTGGTGAAG+TGG | 0.560049 | 5_2:-52029123 | None:intergenic |
| TCAAGTCAGTATAATGATTG+AGG | 0.560467 | 5_2:+52029550 | Msa0775210:three_prime_UTR |
| AGTCAGTATAATGATTGAGG+TGG | 0.575295 | 5_2:+52029553 | Msa0775210:three_prime_UTR |
| CTATGGACTTATTGGCATTG+CGG | 0.579525 | 5_2:-52029736 | None:intergenic |
| TTTGAAATTTAAAACTAGCG+AGG | 0.584085 | 5_2:+52029843 | Msa0775210:three_prime_UTR |
| CTCTTCTGGAGTCCATTGTG+TGG | 0.588727 | 5_2:-52028068 | None:intergenic |
| AATTTGGAAAGCAGTTGAGA+AGG | 0.592793 | 5_2:-52027462 | None:intergenic |
| AAAGTAGCTGAAATGATACC+AGG | 0.595280 | 5_2:+52028151 | Msa0775210:CDS |
| TTCATAAGACAACTTTCAGG+AGG | 0.595999 | 5_2:+52029005 | Msa0775210:CDS |
| GTCTTCTTATCCACATAACA+TGG | 0.600765 | 5_2:+52029331 | Msa0775210:CDS |
| GTCAGTATAATGATTGAGGT+GGG | 0.605498 | 5_2:+52029554 | Msa0775210:three_prime_UTR |
| AAAACTTGATAAGATGAAGT+GGG | 0.612600 | 5_2:+52027979 | Msa0775210:exon |
| GGCCTAAAGAAGTATGGCAA+AGG | 0.616426 | 5_2:+52028906 | Msa0775210:CDS |
| TTTGTGTGTATGATGCAGGA+GGG | 0.617317 | 5_2:-52028015 | None:intergenic |
| AAAGGAAGAAAGGAGTGCCA+TGG | 0.621552 | 5_2:+52028371 | Msa0775210:CDS |
| TGAAATGATACCAGGAAAGA+CGG | 0.622184 | 5_2:+52028159 | Msa0775210:CDS |
| TTTCAGGAGGAAAAGACAAG+AGG | 0.628437 | 5_2:+52029018 | Msa0775210:CDS |
| ATGATACCAGGAAAGACGGT+CGG | 0.635685 | 5_2:+52028163 | Msa0775210:CDS |
| ATTTATGTAGCAGAAAAGCA+AGG | 0.637421 | 5_2:-52027373 | None:intergenic |
| TGCTGGTGTGAAAGTAACAT+GGG | 0.648997 | 5_2:-52029140 | None:intergenic |
| AACAAAACAGAGGAAAACAG+AGG | 0.650998 | 5_2:-52027877 | None:intergenic |
| AAATTTGAATAGGGAAACAG+AGG | 0.653082 | 5_2:-52027907 | None:intergenic |
| TGGCATATCGACTTACAGGA+AGG | 0.653739 | 5_2:+52029666 | Msa0775210:three_prime_UTR |
| TTGAGTGTTAAAGTGCATGC+AGG | 0.655521 | 5_2:-52029531 | None:intergenic |
| AGGAAAACAGAACAAAACAG+AGG | 0.657890 | 5_2:-52027887 | None:intergenic |
| ATGTCTGTAATATAGAAGCT+GGG | 0.666658 | 5_2:+52028221 | Msa0775210:CDS |
| GAAGTAGGAGTATTATAACC+AGG | 0.672487 | 5_2:-52028256 | None:intergenic |
| AAGATAACATGACCACACAA+TGG | 0.675526 | 5_2:+52028056 | Msa0775210:CDS |
| AGTTCATGATAAAGATACGC+CGG | 0.676724 | 5_2:+52028117 | Msa0775210:CDS |
| GAAAGTAACATGGGATTCTG+TGG | 0.681888 | 5_2:-52029131 | None:intergenic |
| TCATAGGAGTTAAAACCATG+AGG | 0.695559 | 5_2:-52029263 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATAAGCAATTTATTTTT+TGG | + | chr5_2:52027571-52027590 | Msa0775210:five_prime_UTR | 10.0% |
| !!! | TTATAAGCAATTTATTTTTT+GGG | + | chr5_2:52027572-52027591 | Msa0775210:five_prime_UTR | 10.0% |
| !!! | TTTTTTTTTAGTGAGAAAAT+AGG | - | chr5_2:52027526-52027545 | None:intergenic | 15.0% |
| !!! | AATTGATTTTAGATCTTAAA+AGG | + | chr5_2:52027622-52027641 | Msa0775210:five_prime_UTR | 15.0% |
| !!! | ATTGATTTTAGATCTTAAAA+GGG | + | chr5_2:52027623-52027642 | Msa0775210:five_prime_UTR | 15.0% |
| !! | ATTATTATCTCTTATCTAAT+TGG | - | chr5_2:52027671-52027690 | None:intergenic | 15.0% |
| !!! | AAAACTCTAAAATTTGAATA+GGG | - | chr5_2:52027919-52027938 | None:intergenic | 15.0% |
| !! | ATAACAAAAACAAATACAAA+AGG | - | chr5_2:52028426-52028445 | None:intergenic | 15.0% |
| !!! | TTAGTATTTTTTCTTTACTA+GGG | + | chr5_2:52028488-52028507 | Msa0775210:intron | 15.0% |
| !!! | AAAATTTTAACATATGTCTT+TGG | - | chr5_2:52029636-52029655 | None:intergenic | 15.0% |
| !!! | AAAGACATATGTTAAAATTT+TGG | + | chr5_2:52029635-52029654 | Msa0775210:three_prime_UTR | 15.0% |
| !!! | TTAAAATTTTGGTTAATTCT+TGG | + | chr5_2:52029646-52029665 | Msa0775210:three_prime_UTR | 15.0% |
| !!! | TAACAAATAAAACTTTAAAG+AGG | + | chr5_2:52029707-52029726 | Msa0775210:three_prime_UTR | 15.0% |
| !!! | GGAAAAATAACAGTTTTTTT+TGG | + | chr5_2:52027348-52027367 | Msa0775210:five_prime_UTR | 20.0% |
| !!! | GAAAACTCTAAAATTTGAAT+AGG | - | chr5_2:52027920-52027939 | None:intergenic | 20.0% |
| !!! | TAGAGTTTTCATTGAATTTT+TGG | + | chr5_2:52027930-52027949 | Msa0775210:five_prime_UTR | 20.0% |
| !!! | AGAGTTTTCATTGAATTTTT+GGG | + | chr5_2:52027931-52027950 | Msa0775210:five_prime_UTR | 20.0% |
| !!! | GTTAGTATTTTTTCTTTACT+AGG | + | chr5_2:52028487-52028506 | Msa0775210:intron | 20.0% |
| !! | ATATCATCTTAAGTTAGAAT+AGG | + | chr5_2:52028788-52028807 | Msa0775210:intron | 20.0% |
| !! | AAATATATTCCAACTTAAGA+TGG | - | chr5_2:52028866-52028885 | None:intergenic | 20.0% |
| ! | CAGCACACAAAAAAAAAAAA+AGG | - | chr5_2:52027277-52027296 | None:intergenic | 25.0% |
| !!! | TGTTTCTTTTTTTGTTGCTA+AGG | + | chr5_2:52027316-52027335 | Msa0775210:five_prime_UTR | 25.0% |
| ! | TTGTTGCTAAGGTATAAAAA+AGG | + | chr5_2:52027327-52027346 | Msa0775210:five_prime_UTR | 25.0% |
| !!! | TCTCATTTTTTTGATCAAGT+GGG | + | chr5_2:52027715-52027734 | Msa0775210:five_prime_UTR | 25.0% |
| ! | TTCCTTTCAAAAAATTCTTG+TGG | + | chr5_2:52027805-52027824 | Msa0775210:five_prime_UTR | 25.0% |
| !!! | TACCACAAGAATTTTTTGAA+AGG | - | chr5_2:52027810-52027829 | None:intergenic | 25.0% |
| ! | AAAACTTGATAAGATGAAGT+GGG | + | chr5_2:52027979-52027998 | Msa0775210:exon | 25.0% |
| !! | TCAAATATTTTGTTCTCTTC+TGG | - | chr5_2:52028085-52028104 | None:intergenic | 25.0% |
| !! | TTAAGAAAGCATAGGATTAA+AGG | + | chr5_2:52028608-52028627 | Msa0775210:intron | 25.0% |
| !! | TAAGAAAGCATAGGATTAAA+GGG | + | chr5_2:52028609-52028628 | Msa0775210:intron | 25.0% |
| !!! | ATGTTTTTTAGCTTTCACAT+AGG | + | chr5_2:52028673-52028692 | Msa0775210:intron | 25.0% |
| ! | GAATAGGTTATGATATAAGT+TGG | + | chr5_2:52028804-52028823 | Msa0775210:intron | 25.0% |
| !!! | ATGATATAAGTTGGTTTTGT+AGG | + | chr5_2:52028813-52028832 | Msa0775210:intron | 25.0% |
| !!! | TGATATAAGTTGGTTTTGTA+GGG | + | chr5_2:52028814-52028833 | Msa0775210:intron | 25.0% |
| !! | TTATGAAATACTTTTGAGCA+TGG | - | chr5_2:52028992-52029011 | None:intergenic | 25.0% |
| ! | TATTTCATAAGACAACTTTC+AGG | + | chr5_2:52029002-52029021 | Msa0775210:CDS | 25.0% |
| ! | GTTAATCTCTCAGAAAAAAT+TGG | + | chr5_2:52029068-52029087 | Msa0775210:CDS | 25.0% |
| ! | GAATAATCAACAAAATGCTA+TGG | + | chr5_2:52029205-52029224 | Msa0775210:CDS | 25.0% |
| ! | AACATTATTCACATGCATAA+AGG | + | chr5_2:52029378-52029397 | Msa0775210:CDS | 25.0% |
| ! | AAGATATTCACATATACCTT+GGG | - | chr5_2:52029455-52029474 | None:intergenic | 25.0% |
| ! | TAAGATATTCACATATACCT+TGG | - | chr5_2:52029456-52029475 | None:intergenic | 25.0% |
| ! | TATGTGAATATCTTATGTTC+TGG | + | chr5_2:52029461-52029480 | Msa0775210:three_prime_UTR | 25.0% |
| ! | TCTTATATCATTGTCAATCA+AGG | - | chr5_2:52029603-52029622 | None:intergenic | 25.0% |
| !!! | ATTTCTAGTGAAGTTTATCA+TGG | + | chr5_2:52029798-52029817 | Msa0775210:three_prime_UTR | 25.0% |
| !! | TTTGAAATTTAAAACTAGCG+AGG | + | chr5_2:52029843-52029862 | Msa0775210:three_prime_UTR | 25.0% |
| !!! | TTTTTTTTTGTGTGCTGAGT+TGG | + | chr5_2:52027280-52027299 | Msa0775210:five_prime_UTR | 30.0% |
| ATTTATGTAGCAGAAAAGCA+AGG | - | chr5_2:52027376-52027395 | None:intergenic | 30.0% | |
| !!! | CTCTCATTTTTTTGATCAAG+TGG | + | chr5_2:52027714-52027733 | Msa0775210:five_prime_UTR | 30.0% |
| AGGAAAAAAAATGAGAGCAA+AGG | - | chr5_2:52027842-52027861 | None:intergenic | 30.0% | |
| AAATTTGAATAGGGAAACAG+AGG | - | chr5_2:52027910-52027929 | None:intergenic | 30.0% | |
| ! | GTTTTCACAAGATCAAACTA+TGG | - | chr5_2:52027964-52027983 | None:intergenic | 30.0% |
| GAAAACTTGATAAGATGAAG+TGG | + | chr5_2:52027978-52027997 | Msa0775210:exon | 30.0% | |
| TGATGTGATGAGACAATATA+AGG | + | chr5_2:52028186-52028205 | Msa0775210:CDS | 30.0% | |
| ATGTCTGTAATATAGAAGCT+GGG | + | chr5_2:52028221-52028240 | Msa0775210:CDS | 30.0% | |
| ! | TTCACCTTTTACCTTAGATT+GGG | + | chr5_2:52028276-52028295 | Msa0775210:CDS | 30.0% |
| TCTGGTTATGATGAATTTAG+AGG | + | chr5_2:52028307-52028326 | Msa0775210:CDS | 30.0% | |
| TATGATGAATTTAGAGGAAG+TGG | + | chr5_2:52028313-52028332 | Msa0775210:CDS | 30.0% | |
| TTAAAGGGTGGAATTTACAA+AGG | + | chr5_2:52028624-52028643 | Msa0775210:intron | 30.0% | |
| TACAAAGGTAATTTAGACCT+AGG | + | chr5_2:52028639-52028658 | Msa0775210:intron | 30.0% | |
| CCTTACAAAATCATCTTGTA+AGG | - | chr5_2:52028745-52028764 | None:intergenic | 30.0% | |
| ! | CCTTACAAGATGATTTTGTA+AGG | + | chr5_2:52028742-52028761 | Msa0775210:intron | 30.0% |
| ! | AAGATGATATTCGAGGATTT+TGG | - | chr5_2:52028778-52028797 | None:intergenic | 30.0% |
| CTAACTTAAGATGATATTCG+AGG | - | chr5_2:52028785-52028804 | None:intergenic | 30.0% | |
| ! | ATGAAAACTTGTTCATGAGT+TGG | - | chr5_2:52029239-52029258 | None:intergenic | 30.0% |
| ! | AACTCATGAACAAGTTTTCA+TGG | + | chr5_2:52029238-52029257 | Msa0775210:CDS | 30.0% |
| CAAGACCAAAATCTTCAAAA+AGG | + | chr5_2:52029296-52029315 | Msa0775210:CDS | 30.0% | |
| !! | CAAGACCTTTTTGAAGATTT+TGG | - | chr5_2:52029304-52029323 | None:intergenic | 30.0% |
| ATTTGGAAAACCATGTTATG+TGG | - | chr5_2:52029344-52029363 | None:intergenic | 30.0% | |
| TCAAGTCAGTATAATGATTG+AGG | + | chr5_2:52029550-52029569 | Msa0775210:three_prime_UTR | 30.0% | |
| AATCAACACTATGGACTTAT+TGG | - | chr5_2:52029747-52029766 | None:intergenic | 30.0% | |
| !!! | AAGTCCATAGTGTTGATTTT+TGG | + | chr5_2:52029749-52029768 | Msa0775210:three_prime_UTR | 30.0% |
| !!! | AGTCCATAGTGTTGATTTTT+GGG | + | chr5_2:52029750-52029769 | Msa0775210:three_prime_UTR | 30.0% |
| !!! | TCTCTCTGCTGTTTTCTAAT+TGG | + | chr5_2:52027403-52027422 | Msa0775210:five_prime_UTR | 35.0% |
| AATTTGGAAAGCAGTTGAGA+AGG | - | chr5_2:52027465-52027484 | None:intergenic | 35.0% | |
| TTCTCAACTGCTTTCCAAAT+TGG | + | chr5_2:52027464-52027483 | Msa0775210:five_prime_UTR | 35.0% | |
| TCTCAACTGCTTTCCAAATT+GGG | + | chr5_2:52027465-52027484 | Msa0775210:five_prime_UTR | 35.0% | |
| CTTGAAAACTTAGCCCAATT+TGG | - | chr5_2:52027481-52027500 | None:intergenic | 35.0% | |
| AAAAATGAGAGCAAAGGTAG+AGG | - | chr5_2:52027836-52027855 | None:intergenic | 35.0% | |
| AACAAAACAGAGGAAAACAG+AGG | - | chr5_2:52027880-52027899 | None:intergenic | 35.0% | |
| AGGAAAACAGAACAAAACAG+AGG | - | chr5_2:52027890-52027909 | None:intergenic | 35.0% | |
| TGATAAGATGAAGTGGGAAA+TGG | + | chr5_2:52027985-52028004 | Msa0775210:exon | 35.0% | |
| CATACACACAAAACTCCAAT+TGG | + | chr5_2:52028026-52028045 | Msa0775210:CDS | 35.0% | |
| ACAAAACTCCAATTGGTGTA+TGG | + | chr5_2:52028033-52028052 | Msa0775210:CDS | 35.0% | |
| GTTATCTTCCATACACCAAT+TGG | - | chr5_2:52028044-52028063 | None:intergenic | 35.0% | |
| AAGATAACATGACCACACAA+TGG | + | chr5_2:52028056-52028075 | Msa0775210:CDS | 35.0% | |
| AGTTCATGATAAAGATACGC+CGG | + | chr5_2:52028117-52028136 | Msa0775210:CDS | 35.0% | |
| AAAGTAGCTGAAATGATACC+AGG | + | chr5_2:52028151-52028170 | Msa0775210:CDS | 35.0% | |
| TGAAATGATACCAGGAAAGA+CGG | + | chr5_2:52028159-52028178 | Msa0775210:CDS | 35.0% | |
| GATGTCTGTAATATAGAAGC+TGG | + | chr5_2:52028220-52028239 | Msa0775210:CDS | 35.0% | |
| !! | GAAGTAGGAGTATTATAACC+AGG | - | chr5_2:52028259-52028278 | None:intergenic | 35.0% |
| ! | TCTAAGGTAAAAGGTGAAGT+AGG | - | chr5_2:52028274-52028293 | None:intergenic | 35.0% |
| ! | CTTCACCTTTTACCTTAGAT+TGG | + | chr5_2:52028275-52028294 | Msa0775210:CDS | 35.0% |
| CTATAACGATTAGCGCAAAT+CGG | + | chr5_2:52028525-52028544 | Msa0775210:intron | 35.0% | |
| AAAGGTAATTTAGACCTAGG+AGG | + | chr5_2:52028642-52028661 | Msa0775210:intron | 35.0% | |
| CAACTTAAGATGGCAACAAA+AGG | - | chr5_2:52028856-52028875 | None:intergenic | 35.0% | |
| ! | CTTTTGTTGCCATCTTAAGT+TGG | + | chr5_2:52028854-52028873 | Msa0775210:intron | 35.0% |
| !! | TCCTGCAGATTATTTCTACT+AGG | + | chr5_2:52028885-52028904 | Msa0775210:intron | 35.0% |
| TTCATAAGACAACTTTCAGG+AGG | + | chr5_2:52029005-52029024 | Msa0775210:CDS | 35.0% | |
| TGGTGAAGTGGATCTATTAT+TGG | - | chr5_2:52029114-52029133 | None:intergenic | 35.0% | |
| ! | CGACTGCTACAAATTTTCAT+TGG | + | chr5_2:52029180-52029199 | Msa0775210:CDS | 35.0% |
| ! | CTGCTACAAATTTTCATTGG+AGG | + | chr5_2:52029183-52029202 | Msa0775210:CDS | 35.0% |
| TCATAGGAGTTAAAACCATG+AGG | - | chr5_2:52029266-52029285 | None:intergenic | 35.0% | |
| !!! | TCATGGTTTTAACTCCTATG+AGG | + | chr5_2:52029265-52029284 | Msa0775210:CDS | 35.0% |
| !! | GTCTTGCATTTTAACCTCAT+AGG | - | chr5_2:52029282-52029301 | None:intergenic | 35.0% |
| GTCTTCTTATCCACATAACA+TGG | + | chr5_2:52029331-52029350 | Msa0775210:CDS | 35.0% | |
| GTTGTGATGAATGTTGCATT+TGG | - | chr5_2:52029361-52029380 | None:intergenic | 35.0% | |
| GTGAATATCTTATGTTCTGG+TGG | + | chr5_2:52029464-52029483 | Msa0775210:three_prime_UTR | 35.0% | |
| AGTCAGTATAATGATTGAGG+TGG | + | chr5_2:52029553-52029572 | Msa0775210:three_prime_UTR | 35.0% | |
| GTCAGTATAATGATTGAGGT+GGG | + | chr5_2:52029554-52029573 | Msa0775210:three_prime_UTR | 35.0% | |
| TCACCCAAAAATCAACACTA+TGG | - | chr5_2:52029756-52029775 | None:intergenic | 35.0% | |
| TGAGAAGGAAGAAAGGGATA+AGG | - | chr5_2:52027450-52027469 | None:intergenic | 40.0% | |
| AGCAGTTGAGAAGGAAGAAA+GGG | - | chr5_2:52027456-52027475 | None:intergenic | 40.0% | |
| AAGCAGTTGAGAAGGAAGAA+AGG | - | chr5_2:52027457-52027476 | None:intergenic | 40.0% | |
| AGAGGAAGATAAAGCAGAGA+AGG | - | chr5_2:52027862-52027881 | None:intergenic | 40.0% | |
| TTTGTGTGTATGATGCAGGA+GGG | - | chr5_2:52028018-52028037 | None:intergenic | 40.0% | |
| ! | TTTTGTGTGTATGATGCAGG+AGG | - | chr5_2:52028019-52028038 | None:intergenic | 40.0% |
| !! | GAGTTTTGTGTGTATGATGC+AGG | - | chr5_2:52028022-52028041 | None:intergenic | 40.0% |
| ! | GGAGTATTATAACCAGGAAC+TGG | - | chr5_2:52028253-52028272 | None:intergenic | 40.0% |
| ! | CTCACCCAATCTAAGGTAAA+AGG | - | chr5_2:52028283-52028302 | None:intergenic | 40.0% |
| TTGTGTTCTTCTTCAGTCCA+TGG | - | chr5_2:52028391-52028410 | None:intergenic | 40.0% | |
| CGATTTGCGCTAATCGTTAT+AGG | - | chr5_2:52028527-52028546 | None:intergenic | 40.0% | |
| ! | GAAAGCATAGGATTAAAGGG+TGG | + | chr5_2:52028612-52028631 | Msa0775210:intron | 40.0% |
| GTAATTTAGACCTAGGAGGT+AGG | + | chr5_2:52028646-52028665 | Msa0775210:intron | 40.0% | |
| AAACATCATTCCTACCTCCT+AGG | - | chr5_2:52028659-52028678 | None:intergenic | 40.0% | |
| GCCTAGTAGAAATAATCTGC+AGG | - | chr5_2:52028889-52028908 | None:intergenic | 40.0% | |
| CTACTAGGCCTAAAGAAGTA+TGG | + | chr5_2:52028900-52028919 | Msa0775210:CDS | 40.0% | |
| CACCTTTGCCATACTTCTTT+AGG | - | chr5_2:52028911-52028930 | None:intergenic | 40.0% | |
| ! | AGAAGTATGGCAAAGGTGAT+TGG | + | chr5_2:52028913-52028932 | Msa0775210:CDS | 40.0% |
| TTTCAGGAGGAAAAGACAAG+AGG | + | chr5_2:52029018-52029037 | Msa0775210:CDS | 40.0% | |
| GAAAGTAACATGGGATTCTG+TGG | - | chr5_2:52029134-52029153 | None:intergenic | 40.0% | |
| TGCTGGTGTGAAAGTAACAT+GGG | - | chr5_2:52029143-52029162 | None:intergenic | 40.0% | |
| ! | CAAGTTTTCATGGATCCTCA+TGG | + | chr5_2:52029248-52029267 | Msa0775210:CDS | 40.0% |
| !! | AGAGTGTCTGAATTTTCCCA+AGG | + | chr5_2:52029436-52029455 | Msa0775210:three_prime_UTR | 40.0% |
| !! | TCTTATGTTCTGGTGGATTG+AGG | + | chr5_2:52029471-52029490 | Msa0775210:three_prime_UTR | 40.0% |
| !! | CTTATGTTCTGGTGGATTGA+GGG | + | chr5_2:52029472-52029491 | Msa0775210:three_prime_UTR | 40.0% |
| !! | TTATGTTCTGGTGGATTGAG+GGG | + | chr5_2:52029473-52029492 | Msa0775210:three_prime_UTR | 40.0% |
| TTGAGTGTTAAAGTGCATGC+AGG | - | chr5_2:52029534-52029553 | None:intergenic | 40.0% | |
| !! | TTCTTGGCATATCGACTTAC+AGG | + | chr5_2:52029662-52029681 | Msa0775210:three_prime_UTR | 40.0% |
| CTATGGACTTATTGGCATTG+CGG | - | chr5_2:52029739-52029758 | None:intergenic | 40.0% | |
| ATAAAGATACGCCGGATCGA+TGG | + | chr5_2:52028125-52028144 | Msa0775210:CDS | 45.0% | |
| ! | GCTACTTTATGCCATCGATC+CGG | - | chr5_2:52028139-52028158 | None:intergenic | 45.0% |
| ATGATACCAGGAAAGACGGT+CGG | + | chr5_2:52028163-52028182 | Msa0775210:CDS | 45.0% | |
| AGAACTGCTCACCCAATCTA+AGG | - | chr5_2:52028290-52028309 | None:intergenic | 45.0% | |
| TTAGATTGGGTGAGCAGTTC+TGG | + | chr5_2:52028289-52028308 | Msa0775210:CDS | 45.0% | |
| TTTAGTTAGAGCTCCTGAGC+AGG | + | chr5_2:52028348-52028367 | Msa0775210:CDS | 45.0% | |
| !! | AAAGGAAGAAAGGAGTGCCA+TGG | + | chr5_2:52028371-52028390 | Msa0775210:CDS | 45.0% |
| ! | ATCGGTTGAGGTTCTAGTGT+TGG | + | chr5_2:52028543-52028562 | Msa0775210:intron | 45.0% |
| ! | TCGTGCGCTTAAGAAAGCAT+AGG | + | chr5_2:52028600-52028619 | Msa0775210:intron | 45.0% |
| ! | GGCCTAAAGAAGTATGGCAA+AGG | + | chr5_2:52028906-52028925 | Msa0775210:CDS | 45.0% |
| CTGCTGGTGTGAAAGTAACA+TGG | - | chr5_2:52029144-52029163 | None:intergenic | 45.0% | |
| !! | AAGTTTGTTGTTGCTGCTGC+TGG | - | chr5_2:52029160-52029179 | None:intergenic | 45.0% |
| AATGATTGAGGTGGGTGAGA+AGG | + | chr5_2:52029562-52029581 | Msa0775210:three_prime_UTR | 45.0% | |
| !! | TGGCATATCGACTTACAGGA+AGG | + | chr5_2:52029666-52029685 | Msa0775210:three_prime_UTR | 45.0% |
| !! | CTCTTCTGGAGTCCATTGTG+TGG | - | chr5_2:52028071-52028090 | None:intergenic | 50.0% |
| TTAGAGCTCCTGAGCAGGAA+AGG | + | chr5_2:52028353-52028372 | Msa0775210:CDS | 50.0% | |
| CCTTTCTTCCTTTCCTGCTC+AGG | - | chr5_2:52028364-52028383 | None:intergenic | 50.0% | |
| CCTGAGCAGGAAAGGAAGAA+AGG | + | chr5_2:52028361-52028380 | Msa0775210:CDS | 50.0% | |
| CGATTAGCGCAAATCGGTTG+AGG | + | chr5_2:52028531-52028550 | Msa0775210:intron | 50.0% | |
| !! | GCATGGCTTGCTACTTGAGT+TGG | - | chr5_2:52028975-52028994 | None:intergenic | 50.0% |
| CATGGGATTCTGTGGTGAAG+TGG | - | chr5_2:52029126-52029145 | None:intergenic | 50.0% | |
| ACATCACCGACCGTCTTTCC+TGG | - | chr5_2:52028172-52028191 | None:intergenic | 55.0% | |
| !! | GCTGGGTTGATTCCAGTTCC+TGG | + | chr5_2:52028238-52028257 | Msa0775210:CDS | 55.0% |
| ! | TTGAGGGGAGCGTGCGTTGA+TGG | + | chr5_2:52029488-52029507 | Msa0775210:three_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 52027264 | 52029941 | 52027264 | ID=Msa0775210;Name=Msa0775210 |
| chr5_2 | mRNA | 52027264 | 52029941 | 52027264 | ID=Msa0775210-mRNA-1;Parent=Msa0775210;Name=Msa0775210-mRNA-1;_AED=0.00;_eAED=0.00;_QI=728|1|1|1|1|1|2|544|307 |
| chr5_2 | exon | 52027264 | 52028410 | 52027264 | ID=Msa0775210-mRNA-1:exon:15495;Parent=Msa0775210-mRNA-1 |
| chr5_2 | exon | 52028893 | 52029941 | 52028893 | ID=Msa0775210-mRNA-1:exon:15496;Parent=Msa0775210-mRNA-1 |
| chr5_2 | five_prime_UTR | 52027264 | 52027991 | 52027264 | ID=Msa0775210-mRNA-1:five_prime_utr;Parent=Msa0775210-mRNA-1 |
| chr5_2 | CDS | 52027992 | 52028410 | 52027992 | ID=Msa0775210-mRNA-1:cds;Parent=Msa0775210-mRNA-1 |
| chr5_2 | CDS | 52028893 | 52029397 | 52028893 | ID=Msa0775210-mRNA-1:cds;Parent=Msa0775210-mRNA-1 |
| chr5_2 | three_prime_UTR | 52029398 | 52029941 | 52029398 | ID=Msa0775210-mRNA-1:three_prime_utr;Parent=Msa0775210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
