Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0776070 | sp|O22558|STY8_ARATH | 27.839 | 273 | 149 | 6 | 315 | 543 | 269 | 537 | 5.65e-31 | 130 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0776070 | G7KEB1 | 90.541 | 592 | 12 | 3 | 1 | 549 | 1 | 591 | 0.0 | 1095 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0776070 | MtrunA17_Chr5g0431191 | 90.541 | 592 | 12 | 3 | 1 | 549 | 1 | 591 | 0.0 | 1095 |
| Msa0776070 | MtrunA17_Chr3g0105891 | 64.333 | 600 | 151 | 10 | 1 | 549 | 1 | 588 | 0.0 | 747 |
| Msa0776070 | MtrunA17_Chr1g0211611 | 27.941 | 272 | 150 | 6 | 314 | 543 | 285 | 552 | 1.67e-31 | 128 |
| Msa0776070 | MtrunA17_Chr3g0143531 | 29.961 | 257 | 136 | 6 | 329 | 543 | 22 | 276 | 2.60e-31 | 123 |
| Msa0776070 | MtrunA17_Chr1g0202101 | 28.627 | 255 | 137 | 6 | 325 | 537 | 276 | 527 | 3.07e-29 | 121 |
| Msa0776070 | MtrunA17_Chr5g0406251 | 24.206 | 504 | 280 | 18 | 123 | 541 | 58 | 544 | 2.41e-27 | 116 |
| Msa0776070 | MtrunA17_Chr8g0388891 | 29.600 | 250 | 148 | 6 | 318 | 541 | 119 | 366 | 7.03e-27 | 112 |
| Msa0776070 | MtrunA17_Chr3g0090261 | 27.306 | 271 | 148 | 6 | 318 | 541 | 68 | 336 | 1.20e-24 | 105 |
| Msa0776070 | MtrunA17_Chr4g0059121 | 24.632 | 272 | 152 | 7 | 319 | 541 | 45 | 312 | 8.59e-21 | 94.0 |
| Msa0776070 | MtrunA17_Chr4g0075541 | 24.407 | 295 | 162 | 9 | 300 | 541 | 55 | 341 | 1.49e-20 | 94.0 |
| Msa0776070 | MtrunA17_Chr3g0117731 | 23.140 | 242 | 141 | 5 | 343 | 541 | 72 | 311 | 2.50e-19 | 89.7 |
| Msa0776070 | MtrunA17_Chr2g0282321 | 23.175 | 315 | 176 | 11 | 276 | 543 | 124 | 419 | 6.02e-19 | 89.7 |
| Msa0776070 | MtrunA17_Chr3g0117811 | 23.077 | 260 | 139 | 6 | 343 | 541 | 75 | 334 | 2.61e-18 | 86.7 |
| Msa0776070 | MtrunA17_Chr7g0244621 | 24.400 | 250 | 135 | 6 | 343 | 541 | 60 | 306 | 1.70e-17 | 84.3 |
| Msa0776070 | MtrunA17_Chr1g0157231 | 25.568 | 176 | 123 | 4 | 325 | 495 | 139 | 311 | 1.52e-15 | 78.6 |
| Msa0776070 | MtrunA17_Chr3g0116981 | 24.542 | 273 | 149 | 10 | 324 | 542 | 18 | 287 | 2.82e-15 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0776070 | AT5G58520.1 | 55.791 | 613 | 196 | 10 | 1 | 547 | 1 | 604 | 0.0 | 632 |
| Msa0776070 | AT5G07140.1 | 54.975 | 593 | 211 | 8 | 1 | 547 | 1 | 583 | 0.0 | 589 |
| Msa0776070 | AT2G17700.1 | 27.839 | 273 | 149 | 6 | 315 | 543 | 269 | 537 | 5.75e-32 | 130 |
| Msa0776070 | AT4G35780.1 | 28.253 | 269 | 143 | 8 | 320 | 543 | 280 | 543 | 8.03e-30 | 124 |
| Msa0776070 | AT4G38470.1 | 27.273 | 264 | 148 | 5 | 320 | 541 | 278 | 539 | 6.78e-29 | 121 |
| Msa0776070 | AT4G38470.2 | 27.273 | 264 | 148 | 5 | 320 | 541 | 278 | 539 | 6.83e-29 | 121 |
| Msa0776070 | AT4G31170.7 | 28.926 | 242 | 127 | 5 | 343 | 541 | 146 | 385 | 5.59e-23 | 102 |
| Msa0776070 | AT4G31170.6 | 28.926 | 242 | 127 | 5 | 343 | 541 | 146 | 385 | 5.59e-23 | 102 |
| Msa0776070 | AT4G31170.5 | 28.926 | 242 | 127 | 5 | 343 | 541 | 146 | 385 | 5.59e-23 | 102 |
| Msa0776070 | AT4G31170.1 | 28.926 | 242 | 127 | 5 | 343 | 541 | 146 | 385 | 5.59e-23 | 102 |
| Msa0776070 | AT4G31170.2 | 28.926 | 242 | 127 | 5 | 343 | 541 | 146 | 385 | 5.59e-23 | 102 |
| Msa0776070 | AT4G31170.3 | 28.926 | 242 | 127 | 5 | 343 | 541 | 146 | 385 | 5.59e-23 | 102 |
| Msa0776070 | AT4G31170.8 | 28.926 | 242 | 127 | 5 | 343 | 541 | 146 | 385 | 5.59e-23 | 102 |
| Msa0776070 | AT4G38470.3 | 29.444 | 180 | 120 | 4 | 320 | 494 | 278 | 455 | 2.64e-20 | 94.7 |
| Msa0776070 | AT2G24360.1 | 28.099 | 242 | 129 | 5 | 343 | 541 | 145 | 384 | 4.84e-20 | 93.2 |
| Msa0776070 | AT5G58950.1 | 24.324 | 259 | 145 | 7 | 332 | 543 | 211 | 465 | 7.55e-20 | 93.2 |
| Msa0776070 | AT3G27560.1 | 24.000 | 275 | 150 | 8 | 324 | 543 | 18 | 288 | 1.65e-18 | 87.8 |
| Msa0776070 | AT4G14780.1 | 24.648 | 284 | 149 | 7 | 323 | 541 | 52 | 335 | 2.00e-18 | 87.4 |
| Msa0776070 | AT5G50000.1 | 23.846 | 260 | 137 | 6 | 343 | 541 | 97 | 356 | 7.41e-18 | 86.3 |
| Msa0776070 | AT3G22750.1 | 22.807 | 285 | 154 | 6 | 323 | 541 | 65 | 349 | 2.74e-17 | 84.3 |
| Msa0776070 | AT4G31170.9 | 30.380 | 158 | 102 | 4 | 343 | 494 | 146 | 301 | 4.37e-13 | 70.9 |
| Msa0776070 | AT4G31170.10 | 30.380 | 158 | 102 | 4 | 343 | 494 | 146 | 301 | 4.37e-13 | 70.9 |
| Msa0776070 | AT4G31170.4 | 30.380 | 158 | 102 | 4 | 343 | 494 | 146 | 301 | 4.37e-13 | 70.9 |
| Msa0776070 | AT5G50000.2 | 25.556 | 180 | 110 | 4 | 343 | 498 | 97 | 276 | 4.48e-11 | 64.7 |
Find 154 sgRNAs with CRISPR-Local
Find 303 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTTCAAGGGGAGAGAATT+AGG | 0.131548 | 5_2:-53541455 | Msa0776070:CDS |
| GAATGCTTGTTTGGGAAATA+TGG | 0.212461 | 5_2:-53540874 | Msa0776070:CDS |
| CTTGCAACGCTCTCATTTCA+TGG | 0.228618 | 5_2:-53541706 | Msa0776070:CDS |
| GATTGTTAGTATTATTATTA+AGG | 0.230250 | 5_2:+53542917 | None:intergenic |
| CACATTCACAGAACCGGTTT+TGG | 0.247650 | 5_2:+53541514 | None:intergenic |
| GCATCTGAAGCTGGATCTTT+TGG | 0.268007 | 5_2:+53541384 | None:intergenic |
| TGCTTCTCCAACACTCTTGC+AGG | 0.275365 | 5_2:+53540839 | None:intergenic |
| GTTTCAAGGGGAGAGAATTA+GGG | 0.284749 | 5_2:-53541454 | Msa0776070:CDS |
| CAAGCTCCACAAAGATCTTC+TGG | 0.285847 | 5_2:-53541153 | Msa0776070:CDS |
| ATTGGACCTAATTCTTATAA+AGG | 0.292084 | 5_2:-53541245 | Msa0776070:CDS |
| TGGCAGTCCTTGGGAACTTC+AGG | 0.306822 | 5_2:+53538897 | None:intergenic |
| TAGGCATGGGAATGCTTGTT+TGG | 0.318792 | 5_2:-53540883 | Msa0776070:CDS |
| GTTTCTTCACATCAAGTTGA+TGG | 0.337096 | 5_2:-53541834 | Msa0776070:CDS |
| GAGAAGAAAGGTTTCACCTT+AGG | 0.338642 | 5_2:-53541623 | Msa0776070:CDS |
| GGGTTGTTCTTCTTGTAGTT+AGG | 0.341611 | 5_2:-53541601 | Msa0776070:CDS |
| TAGATCCCTTTATAAGAATT+AGG | 0.342855 | 5_2:+53541239 | None:intergenic |
| TAGGTTTGGTTGGCAGTCCT+TGG | 0.349106 | 5_2:+53538887 | None:intergenic |
| ATCGGAGAATTGAGGACGTT+TGG | 0.353861 | 5_2:+53538827 | None:intergenic |
| GCGAGTTGGCCAACACTCTA+AGG | 0.355419 | 5_2:+53543137 | None:intergenic |
| GTTCTTCTTGTAGTTAGGTC+TGG | 0.363049 | 5_2:-53541596 | Msa0776070:CDS |
| GTGAATGTGAAGCTTTCATT+TGG | 0.366497 | 5_2:-53541500 | Msa0776070:CDS |
| AAGCTGAAAGGGTGTGAAAA+AGG | 0.373240 | 5_2:-53541191 | Msa0776070:CDS |
| GGGAGAGAATTAGGGGAGAT+TGG | 0.373979 | 5_2:-53541446 | Msa0776070:CDS |
| AAGCTTTCATTTGGACTTTG+TGG | 0.376985 | 5_2:-53541491 | Msa0776070:CDS |
| GAACAAGAAGCTTCAGAGTA+AGG | 0.378267 | 5_2:-53541006 | Msa0776070:CDS |
| CACTACCACCCACCACCTTT+TGG | 0.383600 | 5_2:-53543215 | Msa0776070:five_prime_UTR |
| TTATCAGGAAGCTGAGTTCC+AGG | 0.384759 | 5_2:+53542826 | None:intergenic |
| ATTGTAATGATTACGAATGT+TGG | 0.387334 | 5_2:+53542795 | None:intergenic |
| TTCTTCTAAGAAACTTGCTT+GGG | 0.388623 | 5_2:-53542881 | Msa0776070:CDS |
| TTGGACCTAATTCTTATAAA+GGG | 0.389599 | 5_2:-53541244 | Msa0776070:CDS |
| CCTTGGGAACTTCAGGTCTA+AGG | 0.390694 | 5_2:+53538904 | None:intergenic |
| AGAAGAAAGGTTTCACCTTA+GGG | 0.393038 | 5_2:-53541622 | Msa0776070:CDS |
| ATTTGGACTTTGTGGGTGTC+AGG | 0.393965 | 5_2:-53541483 | Msa0776070:CDS |
| AGTACGAAACTGATGGTTAT+AGG | 0.395521 | 5_2:-53540812 | Msa0776070:CDS |
| CTTCTTCTAAGAAACTTGCT+TGG | 0.396933 | 5_2:-53542882 | Msa0776070:CDS |
| AGAATGGAAGAGTCTTTAGA+AGG | 0.409465 | 5_2:+53543015 | None:intergenic |
| ATTGGAGAAGATAGTGGTAG+TGG | 0.419042 | 5_2:-53541428 | Msa0776070:CDS |
| AGGTTTGGTTGGCAGTCCTT+GGG | 0.420145 | 5_2:+53538888 | None:intergenic |
| CGCAGAGGATTCTGTTAGAT+AGG | 0.420687 | 5_2:-53540902 | Msa0776070:CDS |
| ATGTTGGAGATAAGATTATC+AGG | 0.421188 | 5_2:+53542811 | None:intergenic |
| TGATGGTGAGGTTCAGGCTC+AGG | 0.422888 | 5_2:-53541753 | Msa0776070:CDS |
| CTTGTTCTTGTGTATGAGAA+TGG | 0.423226 | 5_2:+53542999 | None:intergenic |
| CTGTGCCCTCTTGCTACAAA+TGG | 0.429078 | 5_2:+53541652 | None:intergenic |
| CACTCTAAGGCTGCAGCCAT+TGG | 0.437134 | 5_2:+53543150 | None:intergenic |
| TGGTCGTGATGGTGAGGTTC+AGG | 0.437212 | 5_2:-53541759 | Msa0776070:CDS |
| TCCAATGCAATCGACATTGC+AGG | 0.437560 | 5_2:+53541683 | None:intergenic |
| GTTGAGTTTACAGAACAGAT+TGG | 0.447078 | 5_2:-53541263 | Msa0776070:CDS |
| TACCTCATCTTTCATTGTAT+CGG | 0.450015 | 5_2:-53541354 | Msa0776070:CDS |
| TGGAGTATGGTGGTGATTTG+AGG | 0.450380 | 5_2:+53543183 | None:intergenic |
| AGGCATGGGAATGCTTGTTT+GGG | 0.450997 | 5_2:-53540882 | Msa0776070:CDS |
| GTTGTATGGTTGCAGCAATA+TGG | 0.451787 | 5_2:+53538797 | None:intergenic |
| CAGCAATATGGCTAAAATAT+CGG | 0.456068 | 5_2:+53538809 | None:intergenic |
| AATGCTTGTTTGGGAAATAT+GGG | 0.457874 | 5_2:-53540873 | Msa0776070:CDS |
| CAAGCAAGTTTCTTAGAAGA+AGG | 0.461101 | 5_2:+53542883 | None:intergenic |
| AGCTTTCATTTGGACTTTGT+GGG | 0.461461 | 5_2:-53541490 | Msa0776070:CDS |
| TGGAAATGTGAGGTGGAGTA+TGG | 0.462571 | 5_2:+53543170 | None:intergenic |
| GCACAGATCTTTGAGAAGAA+AGG | 0.464070 | 5_2:-53541635 | Msa0776070:CDS |
| AATCTTACTCAACTTTATCC+TGG | 0.465155 | 5_2:-53542844 | Msa0776070:CDS |
| GCGATAAAGAAGCCCAAAAC+CGG | 0.467656 | 5_2:-53541527 | Msa0776070:CDS |
| TTCATCAGTGATGGTGGTTG+TGG | 0.471139 | 5_2:+53543113 | None:intergenic |
| GCAGTTGGCATTGCTGCTTG+TGG | 0.472431 | 5_2:-53538927 | Msa0776070:CDS |
| AAGCTTCACATTCACAGAAC+CGG | 0.472446 | 5_2:+53541508 | None:intergenic |
| CAAGTTGATGGAACAAGCAT+TGG | 0.474887 | 5_2:-53541822 | Msa0776070:CDS |
| GAAGAAAGGCCAAAAGGTGG+TGG | 0.475044 | 5_2:+53543206 | None:intergenic |
| GCAGTTCTGTGGCATATTTG+TGG | 0.479434 | 5_2:-53541099 | Msa0776070:CDS |
| AAGAACAAGTTTCATAAACT+TGG | 0.480591 | 5_2:-53542985 | Msa0776070:CDS |
| AAGGTGGTGGGTGGTAGTGT+GGG | 0.480677 | 5_2:+53543219 | None:intergenic |
| TCATTGTATCGGTCGATGAA+TGG | 0.480681 | 5_2:-53541343 | Msa0776070:CDS |
| TTAGAAGAAGGAGGAGACTC+AGG | 0.481865 | 5_2:+53542895 | None:intergenic |
| GGAGTATGGTGGTGATTTGA+GGG | 0.483036 | 5_2:+53543184 | None:intergenic |
| GGGGAGATTGGAGAAGATAG+TGG | 0.483318 | 5_2:-53541434 | Msa0776070:CDS |
| ATTACAATTCTCTCCCTCTC+AGG | 0.483359 | 5_2:-53542780 | Msa0776070:intron |
| AAAGGTGGTGGGTGGTAGTG+TGG | 0.488575 | 5_2:+53543218 | None:intergenic |
| TCTCCTGTGCAGGCAGCAGT+TGG | 0.491474 | 5_2:-53538942 | Msa0776070:intron |
| ATTTCAAAGCATTCTCAACT+CGG | 0.498817 | 5_2:+53541552 | None:intergenic |
| TAGGCAAAGGCATCTGAAGC+TGG | 0.503027 | 5_2:+53541375 | None:intergenic |
| ATCTACATGGGGAAAAGAGT+TGG | 0.506822 | 5_2:-53541221 | Msa0776070:CDS |
| TAAGGATATTGTTAGAATTG+CGG | 0.510429 | 5_2:-53540988 | Msa0776070:CDS |
| AGAAGATAGTGGTAGTGGAA+AGG | 0.520028 | 5_2:-53541423 | Msa0776070:CDS |
| ATGTGTGGTGACTAAGTTCA+TGG | 0.520912 | 5_2:-53541060 | Msa0776070:CDS |
| ATCAAGTTTATGAATGATCA+TGG | 0.521097 | 5_2:-53540948 | Msa0776070:CDS |
| GATGGTGAGGTTCAGGCTCA+GGG | 0.523676 | 5_2:-53541752 | Msa0776070:CDS |
| AATACATTATGACAAAATGC+TGG | 0.524580 | 5_2:-53538863 | Msa0776070:CDS |
| GAGAATTGAGGACGTTTGGA+AGG | 0.527900 | 5_2:+53538831 | None:intergenic |
| TTGGAATCGAGAAGCTGAAA+GGG | 0.528784 | 5_2:-53541202 | Msa0776070:CDS |
| TCAGTTCCAGAAGATCTTTG+TGG | 0.532536 | 5_2:+53541147 | None:intergenic |
| TGTCAGGAAGAGAGTTTCAA+GGG | 0.533723 | 5_2:-53541467 | Msa0776070:CDS |
| TTTCAAAGCATTCTCAACTC+GGG | 0.533764 | 5_2:+53541553 | None:intergenic |
| TTTCAAGGGGAGAGAATTAG+GGG | 0.533893 | 5_2:-53541453 | Msa0776070:CDS |
| AACTGTGTCTTCATCAGTGA+TGG | 0.535029 | 5_2:+53543104 | None:intergenic |
| GTGGTGATTTGAGGGAAGAA+AGG | 0.542144 | 5_2:+53543192 | None:intergenic |
| TTCTTATAAAGGGATCTACA+TGG | 0.542376 | 5_2:-53541234 | Msa0776070:CDS |
| GAAGAGAGAGGTACCTGAGA+GGG | 0.548044 | 5_2:+53542767 | None:intergenic |
| GCCTGCAATGTCGATTGCAT+TGG | 0.548729 | 5_2:-53541684 | Msa0776070:CDS |
| TGGCTGCAGCCTTAGAGTGT+TGG | 0.551534 | 5_2:-53543146 | Msa0776070:CDS |
| CAAGAGTGTTGGAGAAGCAA+TGG | 0.554989 | 5_2:-53540835 | Msa0776070:CDS |
| CTTTAACATTAAGTCGTGCA+CGG | 0.558550 | 5_2:+53541028 | None:intergenic |
| GAATGGCAGACGATAAAGTC+AGG | 0.561999 | 5_2:-53541326 | Msa0776070:CDS |
| GCTAAAATATCGGAGAATTG+AGG | 0.562943 | 5_2:+53538819 | None:intergenic |
| AGGATTCTGTTAGATAGGCA+TGG | 0.562984 | 5_2:-53540897 | Msa0776070:CDS |
| AGAATTGAGGACGTTTGGAA+GGG | 0.563108 | 5_2:+53538832 | None:intergenic |
| GTGTCAGGAAGAGAGTTTCA+AGG | 0.564199 | 5_2:-53541468 | Msa0776070:CDS |
| GTTTCTCCATTTGTAGCAAG+AGG | 0.565295 | 5_2:-53541658 | Msa0776070:CDS |
| ATGGTGGTTGTGGTGCGAGT+TGG | 0.569708 | 5_2:+53543123 | None:intergenic |
| TTGAGGGAAGAAAGGCCAAA+AGG | 0.569791 | 5_2:+53543200 | None:intergenic |
| TCTTATAAAGGGATCTACAT+GGG | 0.573026 | 5_2:-53541233 | Msa0776070:CDS |
| GGATTCTGTTAGATAGGCAT+GGG | 0.573192 | 5_2:-53540896 | Msa0776070:CDS |
| GAATTGAGGACGTTTGGAAG+GGG | 0.573776 | 5_2:+53538833 | None:intergenic |
| ACAGGCTGAATTTGATATGA+AGG | 0.574972 | 5_2:-53541861 | Msa0776070:CDS |
| TCTTGTTGAATCAAAATCGC+AGG | 0.575108 | 5_2:+53541788 | None:intergenic |
| GTCACTGCCTGCAAGAGTGT+TGG | 0.580519 | 5_2:-53540846 | Msa0776070:CDS |
| TACAAGAAGAACAACCCCTA+AGG | 0.582595 | 5_2:+53541607 | None:intergenic |
| CAAGAGTGTGGTGGTCGTGA+TGG | 0.586645 | 5_2:-53541770 | Msa0776070:CDS |
| AGGTGGTGGGTGGTAGTGTG+GGG | 0.586813 | 5_2:+53543220 | None:intergenic |
| GCAAGTTTCTTAGAAGAAGG+AGG | 0.589011 | 5_2:+53542886 | None:intergenic |
| TTTCTCCATTTGTAGCAAGA+GGG | 0.591140 | 5_2:-53541657 | Msa0776070:CDS |
| GAAGAAAGGTTTCACCTTAG+GGG | 0.593785 | 5_2:-53541621 | Msa0776070:CDS |
| GTGGTGATGAGATTGAGAAA+TGG | 0.602873 | 5_2:-53541304 | Msa0776070:CDS |
| AAGAAAGGCCAAAAGGTGGT+GGG | 0.604665 | 5_2:+53543207 | None:intergenic |
| CCTTAGACCTGAAGTTCCCA+AGG | 0.606630 | 5_2:-53538904 | Msa0776070:CDS |
| TTATAGGTGGCTAGCTCCCG+AGG | 0.609623 | 5_2:-53540796 | Msa0776070:intron |
| ATGAAAGATGAGGTAGGCAA+AGG | 0.612602 | 5_2:+53541362 | None:intergenic |
| AAGAAGTAGCTTCTGATCTG+TGG | 0.612811 | 5_2:+53543052 | None:intergenic |
| TTGATTCAACAAGAGTGTGG+TGG | 0.622192 | 5_2:-53541779 | Msa0776070:CDS |
| TATTTGTGGATGATAACCAT+GGG | 0.624108 | 5_2:-53541085 | Msa0776070:CDS |
| GTTGGAATCGAGAAGCTGAA+AGG | 0.624258 | 5_2:-53541203 | Msa0776070:CDS |
| AATTGCGGTTGATGTAGCTG+AGG | 0.627622 | 5_2:-53540973 | Msa0776070:CDS |
| ATTGCGGTTGATGTAGCTGA+GGG | 0.629504 | 5_2:-53540972 | Msa0776070:CDS |
| AGAAACATTCTGCAGTTCTG+TGG | 0.629504 | 5_2:-53541110 | Msa0776070:CDS |
| TGTGTCTTCATCAGTGATGG+TGG | 0.631340 | 5_2:+53543107 | None:intergenic |
| CTTCTGGAACTGATGACTTG+TGG | 0.631808 | 5_2:-53541137 | Msa0776070:CDS |
| ACTCCACCTCACATTTCCAA+TGG | 0.632580 | 5_2:-53543166 | Msa0776070:exon |
| CTTATAAAGGGATCTACATG+GGG | 0.636148 | 5_2:-53541232 | Msa0776070:CDS |
| GACCGATACAATGAAAGATG+AGG | 0.639889 | 5_2:+53541352 | None:intergenic |
| AGAAGAGAGAGGTACCTGAG+AGG | 0.643347 | 5_2:+53542766 | None:intergenic |
| CAGCCATTGGAAATGTGAGG+TGG | 0.647693 | 5_2:+53543163 | None:intergenic |
| GTGTGGTGGTCGTGATGGTG+AGG | 0.653313 | 5_2:-53541765 | Msa0776070:CDS |
| AAATGTGAGGTGGAGTATGG+TGG | 0.658694 | 5_2:+53543173 | None:intergenic |
| AGAACTGCAGAATGTTTCTG+TGG | 0.660182 | 5_2:+53541114 | None:intergenic |
| TAGTCACCACACATAACCCA+TGG | 0.660731 | 5_2:+53541069 | None:intergenic |
| AAAGGCCAAAAGGTGGTGGG+TGG | 0.666108 | 5_2:+53543210 | None:intergenic |
| GTCAGGAAGAGAGTTTCAAG+GGG | 0.668955 | 5_2:-53541466 | Msa0776070:CDS |
| GATACAATGAAAGATGAGGT+AGG | 0.673973 | 5_2:+53541356 | None:intergenic |
| ACGAAACTGATGGTTATAGG+TGG | 0.685182 | 5_2:-53540809 | Msa0776070:CDS |
| GCAATGGAGTACGAAACTGA+TGG | 0.685897 | 5_2:-53540819 | Msa0776070:CDS |
| GTGGTGACTAAGTTCATGGT+AGG | 0.687017 | 5_2:-53541056 | Msa0776070:CDS |
| AGGGAAGAAAGGCCAAAAGG+TGG | 0.687156 | 5_2:+53543203 | None:intergenic |
| ACAGAGATCTTAATACGCAG+AGG | 0.689031 | 5_2:-53540917 | Msa0776070:CDS |
| ATATTTGTGGATGATAACCA+TGG | 0.693646 | 5_2:-53541086 | Msa0776070:CDS |
| ATGGTGAGGTTCAGGCTCAG+GGG | 0.700236 | 5_2:-53541751 | Msa0776070:CDS |
| TGGCAGACGATAAAGTCAGG+TGG | 0.713223 | 5_2:-53541323 | Msa0776070:CDS |
| CTGCAGCCATTGGAAATGTG+AGG | 0.729871 | 5_2:+53543160 | None:intergenic |
| TGATAACCATGGGTTATGTG+TGG | 0.730765 | 5_2:-53541075 | Msa0776070:CDS |
| TTGCGGTTGATGTAGCTGAG+GGG | 0.764086 | 5_2:-53540971 | Msa0776070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATGAAATATTGATAAAA+TGG | - | chr5_2:53539993-53540012 | Msa0776070:intron | 10.0% |
| !! | TAATGAAATATTGATAAAAT+GGG | - | chr5_2:53539994-53540013 | Msa0776070:intron | 10.0% |
| !! | ATTATTAACATGAATAAAAA+GGG | + | chr5_2:53541277-53541296 | None:intergenic | 10.0% |
| !! | AATTATTAACATGAATAAAA+AGG | + | chr5_2:53541278-53541297 | None:intergenic | 10.0% |
| !! | AAAAAAAAACTATCTAATAA+AGG | - | chr5_2:53542655-53542674 | Msa0776070:intron | 10.0% |
| !! | GATTGTTAGTATTATTATTA+AGG | + | chr5_2:53539117-53539136 | None:intergenic | 15.0% |
| !! | TCTAATAACTCTATTATAAT+TGG | + | chr5_2:53539318-53539337 | None:intergenic | 15.0% |
| !! | TGAATAAATGTTTATAAGTA+GGG | - | chr5_2:53539637-53539656 | Msa0776070:intron | 15.0% |
| !! | GTAAATTAATAAGATATGTT+AGG | + | chr5_2:53542443-53542462 | None:intergenic | 15.0% |
| !!! | ATTAGATAGTTTTTTTTTTC+CGG | + | chr5_2:53542653-53542672 | None:intergenic | 15.0% |
| !!! | ATTTTGTCATAATGTATTTT+AGG | + | chr5_2:53543166-53543185 | None:intergenic | 15.0% |
| !!! | CTATTTTGATTTTGATAGAT+TGG | - | chr5_2:53539363-53539382 | Msa0776070:intron | 20.0% |
| !! | CTGAATAAATGTTTATAAGT+AGG | - | chr5_2:53539636-53539655 | Msa0776070:intron | 20.0% |
| !!! | TTTTTTTTATAGTTATGCAC+AGG | - | chr5_2:53540152-53540171 | Msa0776070:intron | 20.0% |
| !! | GTATCAGATACAATATATAT+CGG | - | chr5_2:53541391-53541410 | Msa0776070:CDS | 20.0% |
| !!! | AATGATTTGTATCTAAGTAT+AGG | - | chr5_2:53541489-53541508 | Msa0776070:CDS | 20.0% |
| !!! | ATGATTTGTATCTAAGTATA+GGG | - | chr5_2:53541490-53541509 | Msa0776070:CDS | 20.0% |
| !! | ACTATAATACTCACATTAAT+TGG | - | chr5_2:53541671-53541690 | Msa0776070:CDS | 20.0% |
| !!! | AGTGGACTATTAATTAAATT+AGG | - | chr5_2:53541726-53541745 | Msa0776070:CDS | 20.0% |
| !!! | GTGGACTATTAATTAAATTA+GGG | - | chr5_2:53541727-53541746 | Msa0776070:CDS | 20.0% |
| !!! | AAAGTTAATAAGTATTGTCT+TGG | - | chr5_2:53541761-53541780 | Msa0776070:CDS | 20.0% |
| ! | AAGAACAAGTTTCATAAACT+TGG | - | chr5_2:53539046-53539065 | Msa0776070:intron | 25.0% |
| ! | ATTGTAATGATTACGAATGT+TGG | + | chr5_2:53539239-53539258 | None:intergenic | 25.0% |
| !! | ATGACGATATACACTAATTT+TGG | - | chr5_2:53539402-53539421 | Msa0776070:intron | 25.0% |
| !!! | TCATGTGTTGTTAGTTATTT+TGG | - | chr5_2:53539529-53539548 | Msa0776070:intron | 25.0% |
| ! | TTGTAATTTCAATACGTACA+AGG | - | chr5_2:53539922-53539941 | Msa0776070:intron | 25.0% |
| ! | TGTAATTTCAATACGTACAA+GGG | - | chr5_2:53539923-53539942 | Msa0776070:intron | 25.0% |
| ! | TAACACAACAAAAGTAAACA+TGG | - | chr5_2:53540080-53540099 | Msa0776070:intron | 25.0% |
| ! | AACACAACAAAAGTAAACAT+GGG | - | chr5_2:53540081-53540100 | Msa0776070:intron | 25.0% |
| ! | ATTGGACCTAATTCTTATAA+AGG | - | chr5_2:53540786-53540805 | Msa0776070:intron | 25.0% |
| ! | TTGGACCTAATTCTTATAAA+GGG | - | chr5_2:53540787-53540806 | Msa0776070:intron | 25.0% |
| ! | TAGATCCCTTTATAAGAATT+AGG | + | chr5_2:53540795-53540814 | None:intergenic | 25.0% |
| ! | TAAGGATATTGTTAGAATTG+CGG | - | chr5_2:53541043-53541062 | Msa0776070:CDS | 25.0% |
| ! | ATCAAGTTTATGAATGATCA+TGG | - | chr5_2:53541083-53541102 | Msa0776070:CDS | 25.0% |
| ! | GATACAATATATATCGGATA+CGG | - | chr5_2:53541397-53541416 | Msa0776070:CDS | 25.0% |
| ! | CATGTCAAATCATTATTAGA+TGG | + | chr5_2:53541436-53541455 | None:intergenic | 25.0% |
| !!! | TGTCATATAAGTGTTGTTTA+GGG | - | chr5_2:53541585-53541604 | Msa0776070:CDS | 25.0% |
| !! | CTTTTAATCAGTGAGAATAA+GGG | + | chr5_2:53541876-53541895 | None:intergenic | 25.0% |
| ! | AGATGAAATTCTATCAAACA+TGG | - | chr5_2:53541904-53541923 | Msa0776070:intron | 25.0% |
| ! | GATGAAATTCTATCAAACAT+GGG | - | chr5_2:53541905-53541924 | Msa0776070:intron | 25.0% |
| ! | ATGAAATTCTATCAAACATG+GGG | - | chr5_2:53541906-53541925 | Msa0776070:intron | 25.0% |
| !! | AAAATTTCATTTTATCCCAC+AGG | - | chr5_2:53542046-53542065 | Msa0776070:intron | 25.0% |
| !!! | TTCTTACTGATTTCCTTTTT+TGG | - | chr5_2:53542094-53542113 | Msa0776070:intron | 25.0% |
| ! | AGAAAATTCACATAACAACT+TGG | + | chr5_2:53542146-53542165 | None:intergenic | 25.0% |
| ! | TAATAATCAAGACACTATAC+TGG | + | chr5_2:53542229-53542248 | None:intergenic | 25.0% |
| !!! | ATCTCTTTTTTATGCTCTTA+TGG | - | chr5_2:53542248-53542267 | Msa0776070:intron | 25.0% |
| ! | TGTATAATAATATACACGAG+TGG | + | chr5_2:53542516-53542535 | None:intergenic | 25.0% |
| !! | TACCAGAATTAATTTGAGAA+TGG | - | chr5_2:53542563-53542582 | Msa0776070:intron | 25.0% |
| ! | CCAAAAACTATATGGTTATT+TGG | + | chr5_2:53542745-53542764 | None:intergenic | 25.0% |
| !! | CCAAATAACCATATAGTTTT+TGG | - | chr5_2:53542742-53542761 | Msa0776070:intron | 25.0% |
| ! | ATGAGCAATGTTTATAGTTA+TGG | - | chr5_2:53543017-53543036 | Msa0776070:CDS | 25.0% |
| !!! | TAATGTATTTTAGGTTTGGT+TGG | + | chr5_2:53543157-53543176 | None:intergenic | 25.0% |
| !!! | GTCATAATGTATTTTAGGTT+TGG | + | chr5_2:53543161-53543180 | None:intergenic | 25.0% |
| ! | AATACATTATGACAAAATGC+TGG | - | chr5_2:53543168-53543187 | Msa0776070:exon | 25.0% |
| ! | TTCTTCTAAGAAACTTGCTT+GGG | - | chr5_2:53539150-53539169 | Msa0776070:intron | 30.0% |
| AATCTTACTCAACTTTATCC+TGG | - | chr5_2:53539187-53539206 | Msa0776070:intron | 30.0% | |
| ATGTTGGAGATAAGATTATC+AGG | + | chr5_2:53539223-53539242 | None:intergenic | 30.0% | |
| !!! | GTGTCTTTTTTTAGCATGTT+TGG | - | chr5_2:53539494-53539513 | Msa0776070:intron | 30.0% |
| ! | TCCTTGAATTTGTCATTTGT+TGG | - | chr5_2:53539552-53539571 | Msa0776070:intron | 30.0% |
| ACCAACAAATGACAAATTCA+AGG | + | chr5_2:53539556-53539575 | None:intergenic | 30.0% | |
| ! | AGGGTTTGTTTGTTCATAAT+GGG | - | chr5_2:53539796-53539815 | Msa0776070:intron | 30.0% |
| AACTCTTAGAAATTGTGGTT+GGG | + | chr5_2:53539866-53539885 | None:intergenic | 30.0% | |
| AAACTCTTAGAAATTGTGGT+TGG | + | chr5_2:53539867-53539886 | None:intergenic | 30.0% | |
| ! | AACCACAATTTCTAAGAGTT+TGG | - | chr5_2:53539866-53539885 | Msa0776070:intron | 30.0% |
| ACATTTAGAGAACAAAGTGA+CGG | - | chr5_2:53539965-53539984 | Msa0776070:intron | 30.0% | |
| !!! | ATTTTGATTCAACAAGAGTG+TGG | - | chr5_2:53540249-53540268 | Msa0776070:intron | 30.0% |
| ! | ATTTCAAAGCATTCTCAACT+CGG | + | chr5_2:53540482-53540501 | None:intergenic | 30.0% |
| TACCTCATCTTTCATTGTAT+CGG | - | chr5_2:53540677-53540696 | Msa0776070:intron | 30.0% | |
| TTCTTATAAAGGGATCTACA+TGG | - | chr5_2:53540797-53540816 | Msa0776070:CDS | 30.0% | |
| TCTTATAAAGGGATCTACAT+GGG | - | chr5_2:53540798-53540817 | Msa0776070:CDS | 30.0% | |
| ATATTTGTGGATGATAACCA+TGG | - | chr5_2:53540945-53540964 | Msa0776070:CDS | 30.0% | |
| TATTTGTGGATGATAACCAT+GGG | - | chr5_2:53540946-53540965 | Msa0776070:CDS | 30.0% | |
| AATGCTTGTTTGGGAAATAT+GGG | - | chr5_2:53541158-53541177 | Msa0776070:CDS | 30.0% | |
| AAAGGCAATTATGTATAGCT+AGG | + | chr5_2:53541339-53541358 | None:intergenic | 30.0% | |
| TACTAATTCTCTTATGCTCA+TGG | - | chr5_2:53541521-53541540 | Msa0776070:CDS | 30.0% | |
| AACAACACTTATATGACACA+AGG | + | chr5_2:53541583-53541602 | None:intergenic | 30.0% | |
| !! | GTGTCATATAAGTGTTGTTT+AGG | - | chr5_2:53541584-53541603 | Msa0776070:CDS | 30.0% |
| ACATGACACTTATAATGAGA+TGG | - | chr5_2:53541827-53541846 | Msa0776070:CDS | 30.0% | |
| AGAATAAGGGTTCATATACA+AGG | + | chr5_2:53541863-53541882 | None:intergenic | 30.0% | |
| ! | GCTTTTAATCAGTGAGAATA+AGG | + | chr5_2:53541877-53541896 | None:intergenic | 30.0% |
| TGAAATTCTATCAAACATGG+GGG | - | chr5_2:53541907-53541926 | Msa0776070:intron | 30.0% | |
| GAAGAAGAAAACACCAAAAA+AGG | + | chr5_2:53542110-53542129 | None:intergenic | 30.0% | |
| TGGTATGCATGCATTATAAA+GGG | + | chr5_2:53542478-53542497 | None:intergenic | 30.0% | |
| ATGGTATGCATGCATTATAA+AGG | + | chr5_2:53542479-53542498 | None:intergenic | 30.0% | |
| AGTGGTTAGTGGTTAAATAA+TGG | + | chr5_2:53542498-53542517 | None:intergenic | 30.0% | |
| CTCCATTCTCAAATTAATTC+TGG | + | chr5_2:53542568-53542587 | None:intergenic | 30.0% | |
| CACAACAACCAAAAACTATA+TGG | + | chr5_2:53542753-53542772 | None:intergenic | 30.0% | |
| GTTGTTGTGCATAAATAAGT+TGG | - | chr5_2:53542764-53542783 | Msa0776070:intron | 30.0% | |
| ! | TATGTAAGGACATTTTCTCT+TGG | + | chr5_2:53542815-53542834 | None:intergenic | 30.0% |
| ATTAAGCTGTTTATCCAAAC+AGG | - | chr5_2:53542902-53542921 | Msa0776070:CDS | 30.0% | |
| ! | TTTGTCTTCTCTTCCTTTTT+GGG | - | chr5_2:53542945-53542964 | Msa0776070:CDS | 30.0% |
| ! | TATCTGTTTTCAACCCAAAA+AGG | + | chr5_2:53542961-53542980 | None:intergenic | 30.0% |
| CAATGTTTATAGTTATGGCA+TGG | - | chr5_2:53543022-53543041 | Msa0776070:CDS | 30.0% | |
| ATAGTTATGGCATGGTAATT+TGG | - | chr5_2:53543030-53543049 | Msa0776070:CDS | 30.0% | |
| TAGTTATGGCATGGTAATTT+GGG | - | chr5_2:53543031-53543050 | Msa0776070:CDS | 30.0% | |
| CAGCAATATGGCTAAAATAT+CGG | + | chr5_2:53543225-53543244 | None:intergenic | 30.0% | |
| TGCAACCATACAACAAAAAT+AGG | - | chr5_2:53543243-53543262 | Msa0776070:five_prime_UTR | 30.0% | |
| AGAATGGAAGAGTCTTTAGA+AGG | + | chr5_2:53539019-53539038 | None:intergenic | 35.0% | |
| CTTGTTCTTGTGTATGAGAA+TGG | + | chr5_2:53539035-53539054 | None:intergenic | 35.0% | |
| CAAGCAAGTTTCTTAGAAGA+AGG | + | chr5_2:53539151-53539170 | None:intergenic | 35.0% | |
| ! | CTTCTTCTAAGAAACTTGCT+TGG | - | chr5_2:53539149-53539168 | Msa0776070:intron | 35.0% |
| ! | ATTGGCTTCTTACAATCACT+AGG | + | chr5_2:53539300-53539319 | None:intergenic | 35.0% |
| AACAACACATGACACATTTG+AGG | + | chr5_2:53539521-53539540 | None:intergenic | 35.0% | |
| ACAATCATCACCTCATAAGT+CGG | - | chr5_2:53539660-53539679 | Msa0776070:intron | 35.0% | |
| ! | GAGGGTTTGTTTGTTCATAA+TGG | - | chr5_2:53539795-53539814 | Msa0776070:intron | 35.0% |
| ! | GGGTTTGTTTGTTCATAATG+GGG | - | chr5_2:53539797-53539816 | Msa0776070:intron | 35.0% |
| ! | GGTTTGTTTGTTCATAATGG+GGG | - | chr5_2:53539798-53539817 | Msa0776070:intron | 35.0% |
| ! | ACCTTGCAAGCTAATTTTGT+GGG | - | chr5_2:53539829-53539848 | Msa0776070:intron | 35.0% |
| GACCAAACTCTTAGAAATTG+TGG | + | chr5_2:53539871-53539890 | None:intergenic | 35.0% | |
| ACAGGCTGAATTTGATATGA+AGG | - | chr5_2:53540170-53540189 | Msa0776070:intron | 35.0% | |
| !! | GTTTCTTCACATCAAGTTGA+TGG | - | chr5_2:53540197-53540216 | Msa0776070:intron | 35.0% |
| TCTTGTTGAATCAAAATCGC+AGG | + | chr5_2:53540246-53540265 | None:intergenic | 35.0% | |
| TTTCTCCATTTGTAGCAAGA+GGG | - | chr5_2:53540374-53540393 | Msa0776070:intron | 35.0% | |
| AGAAGAAAGGTTTCACCTTA+GGG | - | chr5_2:53540409-53540428 | Msa0776070:intron | 35.0% | |
| TAGGTCTGGTCATGAAAAAT+TGG | - | chr5_2:53540449-53540468 | Msa0776070:intron | 35.0% | |
| ! | TTTCAAAGCATTCTCAACTC+GGG | + | chr5_2:53540481-53540500 | None:intergenic | 35.0% |
| GTGAATGTGAAGCTTTCATT+TGG | - | chr5_2:53540531-53540550 | Msa0776070:intron | 35.0% | |
| AAGCTTTCATTTGGACTTTG+TGG | - | chr5_2:53540540-53540559 | Msa0776070:intron | 35.0% | |
| AGCTTTCATTTGGACTTTGT+GGG | - | chr5_2:53540541-53540560 | Msa0776070:intron | 35.0% | |
| GATACAATGAAAGATGAGGT+AGG | + | chr5_2:53540678-53540697 | None:intergenic | 35.0% | |
| GTTGAGTTTACAGAACAGAT+TGG | - | chr5_2:53540768-53540787 | Msa0776070:intron | 35.0% | |
| CTTATAAAGGGATCTACATG+GGG | - | chr5_2:53540799-53540818 | Msa0776070:CDS | 35.0% | |
| CTTTAACATTAAGTCGTGCA+CGG | + | chr5_2:53541006-53541025 | None:intergenic | 35.0% | |
| GAATGCTTGTTTGGGAAATA+TGG | - | chr5_2:53541157-53541176 | Msa0776070:CDS | 35.0% | |
| AGTACGAAACTGATGGTTAT+AGG | - | chr5_2:53541219-53541238 | Msa0776070:CDS | 35.0% | |
| AATGAATAGAAGCAAACCTC+GGG | + | chr5_2:53541254-53541273 | None:intergenic | 35.0% | |
| GAATGAATAGAAGCAAACCT+CGG | + | chr5_2:53541255-53541274 | None:intergenic | 35.0% | |
| TGACACTTATAATGAGATGG+AGG | - | chr5_2:53541830-53541849 | Msa0776070:CDS | 35.0% | |
| TGAACTAGCTAGTGTATACA+AGG | + | chr5_2:53542197-53542216 | None:intergenic | 35.0% | |
| AGTTACTGTAAGTTTCTCTC+CGG | + | chr5_2:53542311-53542330 | None:intergenic | 35.0% | |
| TAATATACACGAGTGGTTAG+TGG | + | chr5_2:53542509-53542528 | None:intergenic | 35.0% | |
| TGCGAAAAAGACCATATCAA+AGG | + | chr5_2:53542606-53542625 | None:intergenic | 35.0% | |
| GTGTGTTTGTGTGATATGTA+AGG | + | chr5_2:53542829-53542848 | None:intergenic | 35.0% | |
| ACACCAATTCACATGATTGT+TGG | - | chr5_2:53542845-53542864 | Msa0776070:CDS | 35.0% | |
| TCACCAACAATCATGTGAAT+TGG | + | chr5_2:53542851-53542870 | None:intergenic | 35.0% | |
| ! | CTTTGTCTTCTCTTCCTTTT+TGG | - | chr5_2:53542944-53542963 | Msa0776070:CDS | 35.0% |
| GGTTGAAAACAGATAATTGC+AGG | - | chr5_2:53542966-53542985 | Msa0776070:CDS | 35.0% | |
| GCTAAAATATCGGAGAATTG+AGG | + | chr5_2:53543215-53543234 | None:intergenic | 35.0% | |
| AACTGTGTCTTCATCAGTGA+TGG | + | chr5_2:53538930-53538949 | None:intergenic | 40.0% | |
| ! | ATCTGTGGTGAGTTTTCATG+AGG | + | chr5_2:53538967-53538986 | None:intergenic | 40.0% |
| AAGAAGTAGCTTCTGATCTG+TGG | + | chr5_2:53538982-53539001 | None:intergenic | 40.0% | |
| GCAAGTTTCTTAGAAGAAGG+AGG | + | chr5_2:53539148-53539167 | None:intergenic | 40.0% | |
| ATTACAATTCTCTCCCTCTC+AGG | - | chr5_2:53539251-53539270 | Msa0776070:intron | 40.0% | |
| GGAAAATGAAGAGAAGAGAG+AGG | + | chr5_2:53539279-53539298 | None:intergenic | 40.0% | |
| !! | ACCTCATAAGTCGGTTTTGT+GGG | - | chr5_2:53539669-53539688 | Msa0776070:intron | 40.0% |
| ! | CACCTTGCAAGCTAATTTTG+TGG | - | chr5_2:53539828-53539847 | Msa0776070:intron | 40.0% |
| ! | CCTTGCAAGCTAATTTTGTG+GGG | - | chr5_2:53539830-53539849 | Msa0776070:intron | 40.0% |
| CGTACAAGGGATATAGTGAT+AGG | - | chr5_2:53539936-53539955 | Msa0776070:intron | 40.0% | |
| !! | CAAGTTGATGGAACAAGCAT+TGG | - | chr5_2:53540209-53540228 | Msa0776070:intron | 40.0% |
| ! | TTGATTCAACAAGAGTGTGG+TGG | - | chr5_2:53540252-53540271 | Msa0776070:intron | 40.0% |
| GTTTCTCCATTTGTAGCAAG+AGG | - | chr5_2:53540373-53540392 | Msa0776070:intron | 40.0% | |
| ! | GCACAGATCTTTGAGAAGAA+AGG | - | chr5_2:53540396-53540415 | Msa0776070:intron | 40.0% |
| GAGAAGAAAGGTTTCACCTT+AGG | - | chr5_2:53540408-53540427 | Msa0776070:intron | 40.0% | |
| GAAGAAAGGTTTCACCTTAG+GGG | - | chr5_2:53540410-53540429 | Msa0776070:intron | 40.0% | |
| TACAAGAAGAACAACCCCTA+AGG | + | chr5_2:53540427-53540446 | None:intergenic | 40.0% | |
| GGGTTGTTCTTCTTGTAGTT+AGG | - | chr5_2:53540430-53540449 | Msa0776070:intron | 40.0% | |
| GTTCTTCTTGTAGTTAGGTC+TGG | - | chr5_2:53540435-53540454 | Msa0776070:intron | 40.0% | |
| !! | ACATTCACAGAACCGGTTTT+GGG | + | chr5_2:53540519-53540538 | None:intergenic | 40.0% |
| AAGCTTCACATTCACAGAAC+CGG | + | chr5_2:53540526-53540545 | None:intergenic | 40.0% | |
| TGTCAGGAAGAGAGTTTCAA+GGG | - | chr5_2:53540564-53540583 | Msa0776070:intron | 40.0% | |
| AGTTTCAAGGGGAGAGAATT+AGG | - | chr5_2:53540576-53540595 | Msa0776070:intron | 40.0% | |
| GTTTCAAGGGGAGAGAATTA+GGG | - | chr5_2:53540577-53540596 | Msa0776070:intron | 40.0% | |
| TTTCAAGGGGAGAGAATTAG+GGG | - | chr5_2:53540578-53540597 | Msa0776070:intron | 40.0% | |
| ! | ATTGGAGAAGATAGTGGTAG+TGG | - | chr5_2:53540603-53540622 | Msa0776070:intron | 40.0% |
| !! | AGAAGATAGTGGTAGTGGAA+AGG | - | chr5_2:53540608-53540627 | Msa0776070:intron | 40.0% |
| ATGAAAGATGAGGTAGGCAA+AGG | + | chr5_2:53540672-53540691 | None:intergenic | 40.0% | |
| GACCGATACAATGAAAGATG+AGG | + | chr5_2:53540682-53540701 | None:intergenic | 40.0% | |
| ! | TCATTGTATCGGTCGATGAA+TGG | - | chr5_2:53540688-53540707 | Msa0776070:intron | 40.0% |
| ! | GTGGTGATGAGATTGAGAAA+TGG | - | chr5_2:53540727-53540746 | Msa0776070:intron | 40.0% |
| ATCTACATGGGGAAAAGAGT+TGG | - | chr5_2:53540810-53540829 | Msa0776070:CDS | 40.0% | |
| TTGGAATCGAGAAGCTGAAA+GGG | - | chr5_2:53540829-53540848 | Msa0776070:CDS | 40.0% | |
| ! | AAGCTGAAAGGGTGTGAAAA+AGG | - | chr5_2:53540840-53540859 | Msa0776070:CDS | 40.0% |
| TCAGTTCCAGAAGATCTTTG+TGG | + | chr5_2:53540887-53540906 | None:intergenic | 40.0% | |
| ! | AGAACTGCAGAATGTTTCTG+TGG | + | chr5_2:53540920-53540939 | None:intergenic | 40.0% |
| AGAAACATTCTGCAGTTCTG+TGG | - | chr5_2:53540921-53540940 | Msa0776070:CDS | 40.0% | |
| ! | TGATAACCATGGGTTATGTG+TGG | - | chr5_2:53540956-53540975 | Msa0776070:CDS | 40.0% |
| ATGTGTGGTGACTAAGTTCA+TGG | - | chr5_2:53540971-53540990 | Msa0776070:CDS | 40.0% | |
| GAACAAGAAGCTTCAGAGTA+AGG | - | chr5_2:53541025-53541044 | Msa0776070:CDS | 40.0% | |
| ACAGAGATCTTAATACGCAG+AGG | - | chr5_2:53541114-53541133 | Msa0776070:CDS | 40.0% | |
| AGGATTCTGTTAGATAGGCA+TGG | - | chr5_2:53541134-53541153 | Msa0776070:CDS | 40.0% | |
| GGATTCTGTTAGATAGGCAT+GGG | - | chr5_2:53541135-53541154 | Msa0776070:CDS | 40.0% | |
| ACGAAACTGATGGTTATAGG+TGG | - | chr5_2:53541222-53541241 | Msa0776070:CDS | 40.0% | |
| CATCACAGTCAGTGTGTTAA+AGG | + | chr5_2:53541357-53541376 | None:intergenic | 40.0% | |
| GCAGTTGTGAAGTAGTTAAG+TGG | - | chr5_2:53541708-53541727 | Msa0776070:CDS | 40.0% | |
| !! | TAAAGCTCTGAACTTCCTTG+AGG | + | chr5_2:53541977-53541996 | None:intergenic | 40.0% |
| ! | TTTTATCCCACAGGTGTTCA+AGG | - | chr5_2:53542055-53542074 | Msa0776070:intron | 40.0% |
| ATTCTTCCTTGAACACCTGT+GGG | + | chr5_2:53542064-53542083 | None:intergenic | 40.0% | |
| AATTCTTCCTTGAACACCTG+TGG | + | chr5_2:53542065-53542084 | None:intergenic | 40.0% | |
| !!! | ATGTCGTTTTCGTGTTGTAC+TGG | + | chr5_2:53542275-53542294 | None:intergenic | 40.0% |
| CATGCTCAAACAATGATGTC+AGG | + | chr5_2:53542420-53542439 | None:intergenic | 40.0% | |
| TATCAAAGGCTTGAGACATG+CGG | + | chr5_2:53542592-53542611 | None:intergenic | 40.0% | |
| CATGTCTCAAGCCTTTGATA+TGG | - | chr5_2:53542592-53542611 | Msa0776070:intron | 40.0% | |
| ATAGTTATTTGTGCGCAGAC+CGG | - | chr5_2:53542631-53542650 | Msa0776070:intron | 40.0% | |
| CAAAGAGTTAGCACGAACTA+GGG | + | chr5_2:53542929-53542948 | None:intergenic | 40.0% | |
| ACAAAGAGTTAGCACGAACT+AGG | + | chr5_2:53542930-53542949 | None:intergenic | 40.0% | |
| GTAATTTGGGAGATGGTTAG+TGG | - | chr5_2:53543044-53543063 | Msa0776070:CDS | 40.0% | |
| AGAATTGAGGACGTTTGGAA+GGG | + | chr5_2:53543202-53543221 | None:intergenic | 40.0% | |
| GTTGTATGGTTGCAGCAATA+TGG | + | chr5_2:53543237-53543256 | None:intergenic | 40.0% | |
| AAGAAAGGCCAAAAGGTGGT+GGG | + | chr5_2:53538827-53538846 | None:intergenic | 45.0% | |
| TTGAGGGAAGAAAGGCCAAA+AGG | + | chr5_2:53538834-53538853 | None:intergenic | 45.0% | |
| GTGGTGATTTGAGGGAAGAA+AGG | + | chr5_2:53538842-53538861 | None:intergenic | 45.0% | |
| ! | GGAGTATGGTGGTGATTTGA+GGG | + | chr5_2:53538850-53538869 | None:intergenic | 45.0% |
| ! | TGGAGTATGGTGGTGATTTG+AGG | + | chr5_2:53538851-53538870 | None:intergenic | 45.0% |
| AAATGTGAGGTGGAGTATGG+TGG | + | chr5_2:53538861-53538880 | None:intergenic | 45.0% | |
| TGGAAATGTGAGGTGGAGTA+TGG | + | chr5_2:53538864-53538883 | None:intergenic | 45.0% | |
| ACTCCACCTCACATTTCCAA+TGG | - | chr5_2:53538865-53538884 | Msa0776070:CDS | 45.0% | |
| !! | TTCATCAGTGATGGTGGTTG+TGG | + | chr5_2:53538921-53538940 | None:intergenic | 45.0% |
| TGTGTCTTCATCAGTGATGG+TGG | + | chr5_2:53538927-53538946 | None:intergenic | 45.0% | |
| TTAGAAGAAGGAGGAGACTC+AGG | + | chr5_2:53539139-53539158 | None:intergenic | 45.0% | |
| TTATCAGGAAGCTGAGTTCC+AGG | + | chr5_2:53539208-53539227 | None:intergenic | 45.0% | |
| !! | CACCTCATAAGTCGGTTTTG+TGG | - | chr5_2:53539668-53539687 | Msa0776070:intron | 45.0% |
| !! | CCTCATAAGTCGGTTTTGTG+GGG | - | chr5_2:53539670-53539689 | Msa0776070:intron | 45.0% |
| GCATCAAGCCCAATAGTGAT+GGG | - | chr5_2:53539769-53539788 | Msa0776070:intron | 45.0% | |
| !! | CCCCACAAAATTAGCTTGCA+AGG | + | chr5_2:53539833-53539852 | None:intergenic | 45.0% |
| CTTGCAACGCTCTCATTTCA+TGG | - | chr5_2:53540325-53540344 | Msa0776070:intron | 45.0% | |
| TCCAATGCAATCGACATTGC+AGG | + | chr5_2:53540351-53540370 | None:intergenic | 45.0% | |
| GCGATAAAGAAGCCCAAAAC+CGG | - | chr5_2:53540504-53540523 | Msa0776070:intron | 45.0% | |
| !! | CACATTCACAGAACCGGTTT+TGG | + | chr5_2:53540520-53540539 | None:intergenic | 45.0% |
| ATTTGGACTTTGTGGGTGTC+AGG | - | chr5_2:53540548-53540567 | Msa0776070:intron | 45.0% | |
| GTGTCAGGAAGAGAGTTTCA+AGG | - | chr5_2:53540563-53540582 | Msa0776070:intron | 45.0% | |
| GTCAGGAAGAGAGTTTCAAG+GGG | - | chr5_2:53540565-53540584 | Msa0776070:intron | 45.0% | |
| !! | GCATCTGAAGCTGGATCTTT+TGG | + | chr5_2:53540650-53540669 | None:intergenic | 45.0% |
| GAATGGCAGACGATAAAGTC+AGG | - | chr5_2:53540705-53540724 | Msa0776070:intron | 45.0% | |
| GTTGGAATCGAGAAGCTGAA+AGG | - | chr5_2:53540828-53540847 | Msa0776070:CDS | 45.0% | |
| CAAGCTCCACAAAGATCTTC+TGG | - | chr5_2:53540878-53540897 | Msa0776070:CDS | 45.0% | |
| !! | CTTCTGGAACTGATGACTTG+TGG | - | chr5_2:53540894-53540913 | Msa0776070:CDS | 45.0% |
| GCAGTTCTGTGGCATATTTG+TGG | - | chr5_2:53540932-53540951 | Msa0776070:CDS | 45.0% | |
| TAGTCACCACACATAACCCA+TGG | + | chr5_2:53540965-53540984 | None:intergenic | 45.0% | |
| GTGGTGACTAAGTTCATGGT+AGG | - | chr5_2:53540975-53540994 | Msa0776070:CDS | 45.0% | |
| ! | AATTGCGGTTGATGTAGCTG+AGG | - | chr5_2:53541058-53541077 | Msa0776070:CDS | 45.0% |
| ! | ATTGCGGTTGATGTAGCTGA+GGG | - | chr5_2:53541059-53541078 | Msa0776070:CDS | 45.0% |
| CGCAGAGGATTCTGTTAGAT+AGG | - | chr5_2:53541129-53541148 | Msa0776070:CDS | 45.0% | |
| TAGGCATGGGAATGCTTGTT+TGG | - | chr5_2:53541148-53541167 | Msa0776070:CDS | 45.0% | |
| AGGCATGGGAATGCTTGTTT+GGG | - | chr5_2:53541149-53541168 | Msa0776070:CDS | 45.0% | |
| !! | CAAGAGTGTTGGAGAAGCAA+TGG | - | chr5_2:53541196-53541215 | Msa0776070:CDS | 45.0% |
| GCAATGGAGTACGAAACTGA+TGG | - | chr5_2:53541212-53541231 | Msa0776070:CDS | 45.0% | |
| ATCAAAGGCTTGAGACATGC+GGG | + | chr5_2:53542591-53542610 | None:intergenic | 45.0% | |
| ATGTCTCTGTCACGCTTTCA+GGG | + | chr5_2:53542995-53543014 | None:intergenic | 45.0% | |
| TGGCATGGTAATTTGGGAGA+TGG | - | chr5_2:53543037-53543056 | Msa0776070:CDS | 45.0% | |
| GAATTGAGGACGTTTGGAAG+GGG | + | chr5_2:53543201-53543220 | None:intergenic | 45.0% | |
| GAGAATTGAGGACGTTTGGA+AGG | + | chr5_2:53543203-53543222 | None:intergenic | 45.0% | |
| ATCGGAGAATTGAGGACGTT+TGG | + | chr5_2:53543207-53543226 | None:intergenic | 45.0% | |
| GAAGAAAGGCCAAAAGGTGG+TGG | + | chr5_2:53538828-53538847 | None:intergenic | 50.0% | |
| AGGGAAGAAAGGCCAAAAGG+TGG | + | chr5_2:53538831-53538850 | None:intergenic | 50.0% | |
| CAGCCATTGGAAATGTGAGG+TGG | + | chr5_2:53538871-53538890 | None:intergenic | 50.0% | |
| CTGCAGCCATTGGAAATGTG+AGG | + | chr5_2:53538874-53538893 | None:intergenic | 50.0% | |
| !! | GAAGAGAGAGGTACCTGAGA+GGG | + | chr5_2:53539267-53539286 | None:intergenic | 50.0% |
| !! | AGAAGAGAGAGGTACCTGAG+AGG | + | chr5_2:53539268-53539287 | None:intergenic | 50.0% |
| TGTGTTGTAGAGTCCCGCAT+CGG | - | chr5_2:53539595-53539614 | Msa0776070:intron | 50.0% | |
| AGACCATCTCTCAACCGATG+CGG | + | chr5_2:53539612-53539631 | None:intergenic | 50.0% | |
| ! | CCCCACAAAACCGACTTATG+AGG | + | chr5_2:53539673-53539692 | None:intergenic | 50.0% |
| TCACTATTGGGCTTGATGCG+TGG | + | chr5_2:53539768-53539787 | None:intergenic | 50.0% | |
| CGCATCAAGCCCAATAGTGA+TGG | - | chr5_2:53539768-53539787 | Msa0776070:intron | 50.0% | |
| ! | GCCTGCAATGTCGATTGCAT+TGG | - | chr5_2:53540347-53540366 | Msa0776070:intron | 50.0% |
| CTGTGCCCTCTTGCTACAAA+TGG | + | chr5_2:53540382-53540401 | None:intergenic | 50.0% | |
| GGGAGAGAATTAGGGGAGAT+TGG | - | chr5_2:53540585-53540604 | Msa0776070:intron | 50.0% | |
| GGGGAGATTGGAGAAGATAG+TGG | - | chr5_2:53540597-53540616 | Msa0776070:intron | 50.0% | |
| !! | TAGGCAAAGGCATCTGAAGC+TGG | + | chr5_2:53540659-53540678 | None:intergenic | 50.0% |
| TGGCAGACGATAAAGTCAGG+TGG | - | chr5_2:53540708-53540727 | Msa0776070:intron | 50.0% | |
| ! | TTGCGGTTGATGTAGCTGAG+GGG | - | chr5_2:53541060-53541079 | Msa0776070:CDS | 50.0% |
| TGCTTCTCCAACACTCTTGC+AGG | + | chr5_2:53541195-53541214 | None:intergenic | 50.0% | |
| CCTTGAGGAGAACGCTAAGT+TGG | + | chr5_2:53541962-53541981 | None:intergenic | 50.0% | |
| CCAACTTAGCGTTCTCCTCA+AGG | - | chr5_2:53541959-53541978 | Msa0776070:intron | 50.0% | |
| CGACATGCTAGTAGTTGAGC+CGG | - | chr5_2:53542289-53542308 | Msa0776070:intron | 50.0% | |
| GATGTCTCTGTCACGCTTTC+AGG | + | chr5_2:53542996-53543015 | None:intergenic | 50.0% | |
| TTGGGAGATGGTTAGTGGTG+AGG | - | chr5_2:53543049-53543068 | Msa0776070:CDS | 50.0% | |
| TTCTGCACTTTCTCCTGTGC+AGG | - | chr5_2:53543079-53543098 | Msa0776070:CDS | 50.0% | |
| CCTTGGGAACTTCAGGTCTA+AGG | + | chr5_2:53543130-53543149 | None:intergenic | 50.0% | |
| CCTTAGACCTGAAGTTCCCA+AGG | - | chr5_2:53543127-53543146 | Msa0776070:CDS | 50.0% | |
| ! | AGGTTTGGTTGGCAGTCCTT+GGG | + | chr5_2:53543146-53543165 | None:intergenic | 50.0% |
| ! | TAGGTTTGGTTGGCAGTCCT+TGG | + | chr5_2:53543147-53543166 | None:intergenic | 50.0% |
| !! | AAGGTGGTGGGTGGTAGTGT+GGG | + | chr5_2:53538815-53538834 | None:intergenic | 55.0% |
| !! | AAAGGTGGTGGGTGGTAGTG+TGG | + | chr5_2:53538816-53538835 | None:intergenic | 55.0% |
| ! | CACTACCACCCACCACCTTT+TGG | - | chr5_2:53538816-53538835 | Msa0776070:CDS | 55.0% |
| !! | AAAGGCCAAAAGGTGGTGGG+TGG | + | chr5_2:53538824-53538843 | None:intergenic | 55.0% |
| !! | CACTCTAAGGCTGCAGCCAT+TGG | + | chr5_2:53538884-53538903 | None:intergenic | 55.0% |
| TGGCTGCAGCCTTAGAGTGT+TGG | - | chr5_2:53538885-53538904 | Msa0776070:CDS | 55.0% | |
| ! | GCGAGTTGGCCAACACTCTA+AGG | + | chr5_2:53538897-53538916 | None:intergenic | 55.0% |
| ATGGTGGTTGTGGTGCGAGT+TGG | + | chr5_2:53538911-53538930 | None:intergenic | 55.0% | |
| GACCATCTCTCAACCGATGC+GGG | + | chr5_2:53539611-53539630 | None:intergenic | 55.0% | |
| CCAAGATCCGTTTCCGCTAG+CGG | - | chr5_2:53539741-53539760 | Msa0776070:intron | 55.0% | |
| CCCTCACGCCCATCACTATT+GGG | + | chr5_2:53539780-53539799 | None:intergenic | 55.0% | |
| !! | CCCAATAGTGATGGGCGTGA+GGG | - | chr5_2:53539777-53539796 | Msa0776070:intron | 55.0% |
| ACCCTCACGCCCATCACTAT+TGG | + | chr5_2:53539781-53539800 | None:intergenic | 55.0% | |
| ! | CAAGAGTGTGGTGGTCGTGA+TGG | - | chr5_2:53540261-53540280 | Msa0776070:intron | 55.0% |
| ! | TGGTCGTGATGGTGAGGTTC+AGG | - | chr5_2:53540272-53540291 | Msa0776070:intron | 55.0% |
| ! | TGATGGTGAGGTTCAGGCTC+AGG | - | chr5_2:53540278-53540297 | Msa0776070:intron | 55.0% |
| GATGGTGAGGTTCAGGCTCA+GGG | - | chr5_2:53540279-53540298 | Msa0776070:intron | 55.0% | |
| ATGGTGAGGTTCAGGCTCAG+GGG | - | chr5_2:53540280-53540299 | Msa0776070:intron | 55.0% | |
| ! | GTCACTGCCTGCAAGAGTGT+TGG | - | chr5_2:53541185-53541204 | Msa0776070:CDS | 55.0% |
| ! | TTATAGGTGGCTAGCTCCCG+AGG | - | chr5_2:53541235-53541254 | Msa0776070:CDS | 55.0% |
| GCACGAACTAGGGTCCTGTT+TGG | + | chr5_2:53542919-53542938 | None:intergenic | 55.0% | |
| ! | GCAGTTGGCATTGCTGCTTG+TGG | - | chr5_2:53543104-53543123 | Msa0776070:CDS | 55.0% |
| TGGCAGTCCTTGGGAACTTC+AGG | + | chr5_2:53543137-53543156 | None:intergenic | 55.0% | |
| !! | AGGTGGTGGGTGGTAGTGTG+GGG | + | chr5_2:53538814-53538833 | None:intergenic | 60.0% |
| !! | GTCCCGCATCGGTTGAGAGA+TGG | - | chr5_2:53539606-53539625 | Msa0776070:intron | 60.0% |
| CCGCTAGCGGAAACGGATCT+TGG | + | chr5_2:53539744-53539763 | None:intergenic | 60.0% | |
| CTTGATGCGTGGTCCGCTAG+CGG | + | chr5_2:53539757-53539776 | None:intergenic | 60.0% | |
| !! | GCCCAATAGTGATGGGCGTG+AGG | - | chr5_2:53539776-53539795 | Msa0776070:intron | 60.0% |
| ! | GTGTGGTGGTCGTGATGGTG+AGG | - | chr5_2:53540266-53540285 | Msa0776070:intron | 60.0% |
| TCTCCTGTGCAGGCAGCAGT+TGG | - | chr5_2:53543089-53543108 | Msa0776070:CDS | 60.0% | |
| ATGCCAACTGCTGCCTGCAC+AGG | + | chr5_2:53543095-53543114 | None:intergenic | 60.0% | |
| GCGTGGTCCGCTAGCGGAAA+CGG | + | chr5_2:53539751-53539770 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 53538785 | 53543268 | 53538785 | ID=Msa0776070;Name=Msa0776070 |
| chr5_2 | mRNA | 53538785 | 53543268 | 53538785 | ID=Msa0776070-mRNA-1;Parent=Msa0776070;Name=Msa0776070-mRNA-1;_AED=0.13;_eAED=0.13;_QI=99|0.5|0.66|1|1|1|3|0|549 |
| chr5_2 | exon | 53538785 | 53538952 | 53538785 | ID=Msa0776070-mRNA-1:exon:16025;Parent=Msa0776070-mRNA-1 |
| chr5_2 | exon | 53540797 | 53541889 | 53540797 | ID=Msa0776070-mRNA-1:exon:16024;Parent=Msa0776070-mRNA-1 |
| chr5_2 | exon | 53542781 | 53543268 | 53542781 | ID=Msa0776070-mRNA-1:exon:16023;Parent=Msa0776070-mRNA-1 |
| chr5_2 | five_prime_UTR | 53543170 | 53543268 | 53543170 | ID=Msa0776070-mRNA-1:five_prime_utr;Parent=Msa0776070-mRNA-1 |
| chr5_2 | CDS | 53542781 | 53543169 | 53542781 | ID=Msa0776070-mRNA-1:cds;Parent=Msa0776070-mRNA-1 |
| chr5_2 | CDS | 53540797 | 53541889 | 53540797 | ID=Msa0776070-mRNA-1:cds;Parent=Msa0776070-mRNA-1 |
| chr5_2 | CDS | 53538785 | 53538952 | 53538785 | ID=Msa0776070-mRNA-1:cds;Parent=Msa0776070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
