Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0777630 | XP_003616071.2 | 85.463 | 227 | 22 | 6 | 1 | 219 | 1 | 224 | 2.54e-130 | 376 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0777630 | sp|Q9FNN6|SRM1_ARATH | 35.754 | 179 | 90 | 7 | 21 | 179 | 12 | 185 | 6.04e-24 | 99.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0777630 | G7K5U8 | 85.463 | 227 | 22 | 6 | 1 | 219 | 1 | 224 | 1.21e-130 | 376 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0777630 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0777630 | MtrunA17_Chr5g0432941 | 85.463 | 227 | 22 | 6 | 1 | 219 | 1 | 224 | 2.34e-134 | 376 |
| Msa0777630 | MtrunA17_Chr5g0432921 | 82.743 | 226 | 30 | 5 | 1 | 219 | 1 | 224 | 5.31e-130 | 365 |
| Msa0777630 | MtrunA17_Chr1g0192061 | 48.592 | 142 | 55 | 2 | 70 | 209 | 19 | 144 | 5.63e-37 | 127 |
| Msa0777630 | MtrunA17_Chr1g0210471 | 37.895 | 190 | 101 | 7 | 20 | 196 | 23 | 208 | 2.49e-31 | 114 |
| Msa0777630 | MtrunA17_Chr1g0162081 | 38.860 | 193 | 90 | 10 | 18 | 186 | 9 | 197 | 2.41e-30 | 113 |
| Msa0777630 | MtrunA17_Chr8g0365011 | 36.702 | 188 | 95 | 8 | 15 | 186 | 2 | 181 | 1.45e-25 | 100 |
| Msa0777630 | MtrunA17_Chr7g0241761 | 33.971 | 209 | 115 | 10 | 7 | 196 | 21 | 225 | 2.98e-22 | 92.4 |
| Msa0777630 | MtrunA17_Chr3g0104071 | 34.946 | 186 | 98 | 9 | 12 | 179 | 34 | 214 | 1.94e-21 | 90.5 |
| Msa0777630 | MtrunA17_Chr4g0062741 | 30.493 | 223 | 105 | 11 | 21 | 195 | 8 | 228 | 8.42e-21 | 88.2 |
| Msa0777630 | MtrunA17_Chr5g0429521 | 32.812 | 192 | 103 | 8 | 7 | 179 | 15 | 199 | 1.06e-20 | 88.2 |
| Msa0777630 | MtrunA17_Chr5g0436501 | 32.164 | 171 | 103 | 7 | 20 | 179 | 26 | 194 | 1.27e-16 | 76.3 |
| Msa0777630 | MtrunA17_Chr5g0409841 | 46.512 | 86 | 43 | 2 | 113 | 195 | 93 | 178 | 5.05e-15 | 71.2 |
| Msa0777630 | MtrunA17_Chr5g0440731 | 39.423 | 104 | 56 | 4 | 97 | 195 | 92 | 193 | 2.50e-14 | 70.5 |
| Msa0777630 | MtrunA17_Chr5g0440741 | 43.182 | 88 | 45 | 3 | 113 | 195 | 101 | 188 | 1.10e-13 | 68.6 |
| Msa0777630 | MtrunA17_Chr4g0059701 | 38.000 | 100 | 53 | 3 | 62 | 157 | 36 | 130 | 5.78e-13 | 66.6 |
| Msa0777630 | MtrunA17_Chr8g0389241 | 46.575 | 73 | 36 | 2 | 114 | 185 | 107 | 177 | 5.96e-13 | 66.2 |
| Msa0777630 | MtrunA17_Chr5g0409831 | 40.964 | 83 | 45 | 3 | 78 | 159 | 46 | 125 | 1.16e-12 | 64.7 |
| Msa0777630 | MtrunA17_Chr3g0092621 | 46.970 | 66 | 33 | 2 | 114 | 178 | 86 | 150 | 4.74e-12 | 62.4 |
| Msa0777630 | MtrunA17_Chr6g0488471 | 49.231 | 65 | 31 | 2 | 114 | 177 | 99 | 162 | 4.93e-12 | 63.9 |
| Msa0777630 | MtrunA17_Chr6g0452791 | 60.870 | 46 | 17 | 1 | 114 | 158 | 82 | 127 | 5.94e-12 | 62.0 |
| Msa0777630 | MtrunA17_Chr5g0415191 | 43.421 | 76 | 31 | 2 | 84 | 158 | 85 | 149 | 6.69e-12 | 63.5 |
| Msa0777630 | MtrunA17_Chr4g0055931 | 35.354 | 99 | 62 | 2 | 81 | 178 | 64 | 161 | 6.75e-12 | 63.5 |
| Msa0777630 | MtrunA17_Chr3g0135671 | 53.448 | 58 | 26 | 1 | 114 | 170 | 93 | 150 | 3.18e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0777630 | AT5G04760.1 | 36.022 | 186 | 87 | 6 | 18 | 186 | 3 | 173 | 4.82e-25 | 98.2 |
| Msa0777630 | AT5G08520.1 | 35.754 | 179 | 90 | 7 | 21 | 179 | 12 | 185 | 6.14e-25 | 99.8 |
| Msa0777630 | AT3G10580.2 | 38.571 | 140 | 79 | 3 | 21 | 158 | 8 | 142 | 2.57e-22 | 92.0 |
| Msa0777630 | AT3G10580.1 | 38.571 | 140 | 79 | 3 | 21 | 158 | 8 | 142 | 3.91e-22 | 92.0 |
| Msa0777630 | AT5G23650.1 | 36.813 | 182 | 92 | 7 | 9 | 171 | 1 | 178 | 7.06e-22 | 92.0 |
| Msa0777630 | AT2G38090.1 | 31.604 | 212 | 106 | 10 | 10 | 197 | 18 | 214 | 7.44e-21 | 88.6 |
| Msa0777630 | AT4G09450.1 | 36.842 | 152 | 86 | 4 | 20 | 169 | 6 | 149 | 1.96e-19 | 82.8 |
| Msa0777630 | AT5G01200.1 | 31.841 | 201 | 110 | 6 | 5 | 179 | 14 | 213 | 2.21e-19 | 84.3 |
| Msa0777630 | AT5G58900.1 | 32.787 | 183 | 101 | 6 | 16 | 179 | 29 | 208 | 2.84e-19 | 84.3 |
| Msa0777630 | AT1G49010.1 | 30.457 | 197 | 96 | 8 | 21 | 179 | 8 | 201 | 6.89e-19 | 83.6 |
| Msa0777630 | AT5G05790.2 | 30.899 | 178 | 102 | 5 | 17 | 179 | 27 | 198 | 1.67e-17 | 79.3 |
| Msa0777630 | AT5G05790.1 | 30.899 | 178 | 102 | 5 | 17 | 179 | 27 | 198 | 1.67e-17 | 79.3 |
| Msa0777630 | AT3G11280.2 | 32.317 | 164 | 102 | 6 | 21 | 178 | 33 | 193 | 2.88e-16 | 75.9 |
| Msa0777630 | AT3G11280.1 | 32.317 | 164 | 102 | 6 | 21 | 178 | 33 | 193 | 2.88e-16 | 75.9 |
| Msa0777630 | AT5G47390.1 | 36.752 | 117 | 54 | 5 | 84 | 194 | 79 | 181 | 5.85e-14 | 70.1 |
| Msa0777630 | AT1G70000.1 | 53.571 | 56 | 25 | 1 | 104 | 158 | 90 | 145 | 1.31e-12 | 65.5 |
| Msa0777630 | AT1G70000.2 | 53.571 | 56 | 25 | 1 | 104 | 158 | 90 | 145 | 1.31e-12 | 65.5 |
| Msa0777630 | AT3G10590.1 | 27.374 | 179 | 108 | 5 | 16 | 177 | 2 | 175 | 2.81e-12 | 63.9 |
| Msa0777630 | AT5G61620.1 | 47.887 | 71 | 35 | 2 | 108 | 177 | 104 | 173 | 1.09e-11 | 63.5 |
Find 46 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCATTTCCTTCACATAAA+TGG | 0.223126 | 5_2:+56731659 | Msa0777630:CDS |
| TTGAATTTCAACATTTAATT+CGG | 0.308654 | 5_2:-56731848 | None:intergenic |
| TTCTTAGTCTTATTCTTAGT+TGG | 0.323967 | 5_2:-56730941 | None:intergenic |
| AGATTCATAAGAAGGGAAAT+TGG | 0.369394 | 5_2:+56731576 | Msa0777630:CDS |
| GTCCTTACTGAGAAGAGGTT+TGG | 0.374736 | 5_2:-56731747 | None:intergenic |
| TTAGTCTTATTCTTAGTTGG+AGG | 0.415408 | 5_2:-56730938 | None:intergenic |
| GAAAATCTTGCTCTTGTTTG+CGG | 0.422028 | 5_2:+56730773 | Msa0777630:CDS |
| ATAAAATCATCTGAGTTTGT+TGG | 0.441615 | 5_2:-56730878 | None:intergenic |
| CTTCAACATTACCTCATTGA+AGG | 0.462445 | 5_2:+56731715 | Msa0777630:CDS |
| GGGGATCGAGATTCATAAGA+AGG | 0.485700 | 5_2:+56731568 | Msa0777630:CDS |
| ATGAACTACACAAATAATGA+TGG | 0.488615 | 5_2:+56730662 | Msa0777630:CDS |
| TCCCATGAGGTAGGAGGAGA+TGG | 0.491481 | 5_2:-56731776 | None:intergenic |
| CTCAAGATATTCAAAGAGAA+TGG | 0.491655 | 5_2:-56730729 | None:intergenic |
| GCATGGCTAGCACATTGACT+TGG | 0.494579 | 5_2:-56731632 | None:intergenic |
| TTCAACATTTAATTCGGATG+AGG | 0.495392 | 5_2:-56731842 | None:intergenic |
| TATTTGTGTAGTTCATATGT+TGG | 0.507032 | 5_2:-56730655 | None:intergenic |
| CTAAGAAAGTGGTGAAACAT+TGG | 0.507701 | 5_2:+56730957 | Msa0777630:CDS |
| TTCCATCTCCTCCTACCTCA+TGG | 0.508016 | 5_2:+56731774 | Msa0777630:CDS |
| GGATGAGGATAAAGAAGAGC+TGG | 0.516096 | 5_2:-56731827 | None:intergenic |
| TTGATGTACCATTTATGTGA+AGG | 0.524593 | 5_2:-56731667 | None:intergenic |
| TTCCAAACCTCTTCTCAGTA+AGG | 0.524962 | 5_2:+56731745 | Msa0777630:CDS |
| TAAGAATAAGACTAAGAAAG+TGG | 0.531612 | 5_2:+56730946 | Msa0777630:CDS |
| TTCAACATTACCTCATTGAA+GGG | 0.537386 | 5_2:+56731716 | Msa0777630:CDS |
| TTTATAGGTTATTTGTAGAG+GGG | 0.539836 | 5_2:+56731549 | Msa0777630:intron |
| GAGCTGGAACATAGAGAAGA+GGG | 0.552512 | 5_2:-56731811 | None:intergenic |
| TCCATCTCCTCCTACCTCAT+GGG | 0.558700 | 5_2:+56731775 | Msa0777630:CDS |
| AGGAAGTACAAGAAGGTCGA+TGG | 0.560186 | 5_2:+56730750 | Msa0777630:CDS |
| ATGTTGTCCTTACTGAGAAG+AGG | 0.560674 | 5_2:-56731752 | None:intergenic |
| CATTCTCTTTGAATATCTTG+AGG | 0.571841 | 5_2:+56730730 | Msa0777630:CDS |
| GAAAATCAAAGGAGTGGACA+TGG | 0.573641 | 5_2:+56730684 | Msa0777630:CDS |
| GGGATCGAGATTCATAAGAA+GGG | 0.590508 | 5_2:+56731569 | Msa0777630:CDS |
| AAATAATGATGGAAAATCAA+AGG | 0.595595 | 5_2:+56730673 | Msa0777630:CDS |
| TCTCCTCCTACCTCATGGGA+TGG | 0.596171 | 5_2:+56731779 | Msa0777630:CDS |
| AGAGCTGGAACATAGAGAAG+AGG | 0.602888 | 5_2:-56731812 | None:intergenic |
| GACTTAGCACTCATTGAGGA+AGG | 0.612605 | 5_2:+56730842 | Msa0777630:CDS |
| ATGATGGAAAATCAAAGGAG+TGG | 0.613850 | 5_2:+56730678 | Msa0777630:CDS |
| TTTCCATCCCATGAGGTAGG+AGG | 0.614524 | 5_2:-56731782 | None:intergenic |
| TATCTTGAGGAAGTACAAGA+AGG | 0.618040 | 5_2:+56730743 | Msa0777630:CDS |
| GGAATGATCTCCCTTCAATG+AGG | 0.623973 | 5_2:-56731726 | None:intergenic |
| AAATTTCCATCCCATGAGGT+AGG | 0.632795 | 5_2:-56731785 | None:intergenic |
| CTGGAACATAGAGAAGAGGG+TGG | 0.633901 | 5_2:-56731808 | None:intergenic |
| GGAAGTACAAGAAGGTCGAT+GGG | 0.635752 | 5_2:+56730751 | Msa0777630:CDS |
| GCATGACTTAGCACTCATTG+AGG | 0.665431 | 5_2:+56730838 | Msa0777630:CDS |
| AAAATCAAAGGAGTGGACAT+GGG | 0.673138 | 5_2:+56730685 | Msa0777630:CDS |
| ATTGGAGTGAAGAAGAACAC+AGG | 0.701675 | 5_2:+56730975 | Msa0777630:CDS |
| GTGGAAATTTCCATCCCATG+AGG | 0.722495 | 5_2:-56731789 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTATTTGTTGATAAA+AGG | - | chr5_2:56731197-56731216 | None:intergenic | 10.0% |
| !!! | TTTTATCAACAAATAAAAAA+AGG | + | chr5_2:56731196-56731215 | Msa0777630:intron | 10.0% |
| !! | TTTATCAACAAATAAAAAAA+GGG | + | chr5_2:56731197-56731216 | Msa0777630:intron | 10.0% |
| !! | ATATTTCAATAGAAAAAAAA+AGG | - | chr5_2:56731305-56731324 | None:intergenic | 10.0% |
| !!! | TTTTTTTATTTGTTGATAAA+AGG | - | chr5_2:56731197-56731216 | None:intergenic | 10.0% |
| !!! | TTTTATCAACAAATAAAAAA+AGG | + | chr5_2:56731196-56731215 | Msa0777630:intron | 10.0% |
| !! | TTTATCAACAAATAAAAAAA+GGG | + | chr5_2:56731197-56731216 | Msa0777630:intron | 10.0% |
| !! | ATATTTCAATAGAAAAAAAA+AGG | - | chr5_2:56731305-56731324 | None:intergenic | 10.0% |
| !!! | TTTACTAATTTCTCTTTTTA+CGG | - | chr5_2:56731099-56731118 | None:intergenic | 15.0% |
| !!! | TTTACTAATTTCTCTTTTTA+CGG | - | chr5_2:56731099-56731118 | None:intergenic | 15.0% |
| !!! | AAATAATGATGGAAAATCAA+AGG | + | chr5_2:56730673-56730692 | Msa0777630:CDS | 20.0% |
| !!! | GATACGTTTATTCTTTTATT+AGG | + | chr5_2:56731268-56731287 | Msa0777630:intron | 20.0% |
| !!! | TTTCTTTTGAATCCAATTTA+AGG | - | chr5_2:56731397-56731416 | None:intergenic | 20.0% |
| !! | TTAAATTGGATTCAAAAGAA+AGG | + | chr5_2:56731396-56731415 | Msa0777630:intron | 20.0% |
| !!! | AGTCAATTTAGTTTATATCA+TGG | - | chr5_2:56731511-56731530 | None:intergenic | 20.0% |
| !!! | TTTTTATAGGTTATTTGTAG+AGG | + | chr5_2:56731547-56731566 | Msa0777630:intron | 20.0% |
| !!! | TTTTATAGGTTATTTGTAGA+GGG | + | chr5_2:56731548-56731567 | Msa0777630:intron | 20.0% |
| !!! | AAATAATGATGGAAAATCAA+AGG | + | chr5_2:56730673-56730692 | Msa0777630:CDS | 20.0% |
| !!! | GATACGTTTATTCTTTTATT+AGG | + | chr5_2:56731268-56731287 | Msa0777630:intron | 20.0% |
| !!! | TTTCTTTTGAATCCAATTTA+AGG | - | chr5_2:56731397-56731416 | None:intergenic | 20.0% |
| !! | TTAAATTGGATTCAAAAGAA+AGG | + | chr5_2:56731396-56731415 | Msa0777630:intron | 20.0% |
| !!! | AGTCAATTTAGTTTATATCA+TGG | - | chr5_2:56731511-56731530 | None:intergenic | 20.0% |
| !!! | TTTTTATAGGTTATTTGTAG+AGG | + | chr5_2:56731547-56731566 | Msa0777630:intron | 20.0% |
| !!! | TTTTATAGGTTATTTGTAGA+GGG | + | chr5_2:56731548-56731567 | Msa0777630:intron | 20.0% |
| ! | TATTTGTGTAGTTCATATGT+TGG | - | chr5_2:56730658-56730677 | None:intergenic | 25.0% |
| ! | ATGAACTACACAAATAATGA+TGG | + | chr5_2:56730662-56730681 | Msa0777630:CDS | 25.0% |
| ! | ATAAAATCATCTGAGTTTGT+TGG | - | chr5_2:56730881-56730900 | None:intergenic | 25.0% |
| !!! | TCAGATGATTTTATTTCGAA+AGG | + | chr5_2:56730887-56730906 | Msa0777630:CDS | 25.0% |
| !!! | TTCTTAGTCTTATTCTTAGT+TGG | - | chr5_2:56730944-56730963 | None:intergenic | 25.0% |
| ! | TAAGAATAAGACTAAGAAAG+TGG | + | chr5_2:56730946-56730965 | Msa0777630:CDS | 25.0% |
| !! | TTATTTTCTTCTTCTTCATG+TGG | + | chr5_2:56731047-56731066 | Msa0777630:intron | 25.0% |
| !!! | GAAGAACACATTACTTTTTA+CGG | + | chr5_2:56731234-56731253 | Msa0777630:intron | 25.0% |
| ! | TACTACCTTATTCCTTAAAT+TGG | + | chr5_2:56731382-56731401 | Msa0777630:intron | 25.0% |
| ! | TGAATCCAATTTAAGGAATA+AGG | - | chr5_2:56731390-56731409 | None:intergenic | 25.0% |
| ! | TTGACACTAACATATGTATT+GGG | + | chr5_2:56731464-56731483 | Msa0777630:intron | 25.0% |
| ! | CCTATAAAAAAAATGATGAG+AGG | - | chr5_2:56731537-56731556 | None:intergenic | 25.0% |
| !!! | CCTCTCATCATTTTTTTTAT+AGG | + | chr5_2:56731534-56731553 | Msa0777630:intron | 25.0% |
| ! | TTTATAGGTTATTTGTAGAG+GGG | + | chr5_2:56731549-56731568 | Msa0777630:intron | 25.0% |
| ! | TATTTGTGTAGTTCATATGT+TGG | - | chr5_2:56730658-56730677 | None:intergenic | 25.0% |
| ! | ATGAACTACACAAATAATGA+TGG | + | chr5_2:56730662-56730681 | Msa0777630:CDS | 25.0% |
| ! | ATAAAATCATCTGAGTTTGT+TGG | - | chr5_2:56730881-56730900 | None:intergenic | 25.0% |
| !!! | TCAGATGATTTTATTTCGAA+AGG | + | chr5_2:56730887-56730906 | Msa0777630:CDS | 25.0% |
| !!! | TTCTTAGTCTTATTCTTAGT+TGG | - | chr5_2:56730944-56730963 | None:intergenic | 25.0% |
| ! | TAAGAATAAGACTAAGAAAG+TGG | + | chr5_2:56730946-56730965 | Msa0777630:CDS | 25.0% |
| !! | TTATTTTCTTCTTCTTCATG+TGG | + | chr5_2:56731047-56731066 | Msa0777630:intron | 25.0% |
| !!! | GAAGAACACATTACTTTTTA+CGG | + | chr5_2:56731234-56731253 | Msa0777630:intron | 25.0% |
| ! | TACTACCTTATTCCTTAAAT+TGG | + | chr5_2:56731382-56731401 | Msa0777630:intron | 25.0% |
| ! | TGAATCCAATTTAAGGAATA+AGG | - | chr5_2:56731390-56731409 | None:intergenic | 25.0% |
| ! | TTGACACTAACATATGTATT+GGG | + | chr5_2:56731464-56731483 | Msa0777630:intron | 25.0% |
| ! | CCTATAAAAAAAATGATGAG+AGG | - | chr5_2:56731537-56731556 | None:intergenic | 25.0% |
| !!! | CCTCTCATCATTTTTTTTAT+AGG | + | chr5_2:56731534-56731553 | Msa0777630:intron | 25.0% |
| ! | TTTATAGGTTATTTGTAGAG+GGG | + | chr5_2:56731549-56731568 | Msa0777630:intron | 25.0% |
| CTCAAGATATTCAAAGAGAA+TGG | - | chr5_2:56730732-56730751 | None:intergenic | 30.0% | |
| CATTCTCTTTGAATATCTTG+AGG | + | chr5_2:56730730-56730749 | Msa0777630:CDS | 30.0% | |
| !! | TTAGTCTTATTCTTAGTTGG+AGG | - | chr5_2:56730941-56730960 | None:intergenic | 30.0% |
| ! | TTTTTATTCGAAGAACACCT+TGG | + | chr5_2:56731120-56731139 | Msa0777630:intron | 30.0% |
| ACCATAAAAGTAATGATGCA+GGG | - | chr5_2:56731347-56731366 | None:intergenic | 30.0% | |
| AACCATAAAAGTAATGATGC+AGG | - | chr5_2:56731348-56731367 | None:intergenic | 30.0% | |
| CTTGACACTAACATATGTAT+TGG | + | chr5_2:56731463-56731482 | Msa0777630:intron | 30.0% | |
| AGATTCATAAGAAGGGAAAT+TGG | + | chr5_2:56731576-56731595 | Msa0777630:CDS | 30.0% | |
| AAGCATTTCCTTCACATAAA+TGG | + | chr5_2:56731659-56731678 | Msa0777630:CDS | 30.0% | |
| TTGATGTACCATTTATGTGA+AGG | - | chr5_2:56731670-56731689 | None:intergenic | 30.0% | |
| TTCAACATTACCTCATTGAA+GGG | + | chr5_2:56731716-56731735 | Msa0777630:CDS | 30.0% | |
| CTCAAGATATTCAAAGAGAA+TGG | - | chr5_2:56730732-56730751 | None:intergenic | 30.0% | |
| CATTCTCTTTGAATATCTTG+AGG | + | chr5_2:56730730-56730749 | Msa0777630:CDS | 30.0% | |
| !! | TTAGTCTTATTCTTAGTTGG+AGG | - | chr5_2:56730941-56730960 | None:intergenic | 30.0% |
| ! | TTTTTATTCGAAGAACACCT+TGG | + | chr5_2:56731120-56731139 | Msa0777630:intron | 30.0% |
| ACCATAAAAGTAATGATGCA+GGG | - | chr5_2:56731347-56731366 | None:intergenic | 30.0% | |
| AACCATAAAAGTAATGATGC+AGG | - | chr5_2:56731348-56731367 | None:intergenic | 30.0% | |
| CTTGACACTAACATATGTAT+TGG | + | chr5_2:56731463-56731482 | Msa0777630:intron | 30.0% | |
| AGATTCATAAGAAGGGAAAT+TGG | + | chr5_2:56731576-56731595 | Msa0777630:CDS | 30.0% | |
| AAGCATTTCCTTCACATAAA+TGG | + | chr5_2:56731659-56731678 | Msa0777630:CDS | 30.0% | |
| TTGATGTACCATTTATGTGA+AGG | - | chr5_2:56731670-56731689 | None:intergenic | 30.0% | |
| TTCAACATTACCTCATTGAA+GGG | + | chr5_2:56731716-56731735 | Msa0777630:CDS | 30.0% | |
| ! | ATGATGGAAAATCAAAGGAG+TGG | + | chr5_2:56730678-56730697 | Msa0777630:CDS | 35.0% |
| AAAATCAAAGGAGTGGACAT+GGG | + | chr5_2:56730685-56730704 | Msa0777630:CDS | 35.0% | |
| ! | TATCTTGAGGAAGTACAAGA+AGG | + | chr5_2:56730743-56730762 | Msa0777630:CDS | 35.0% |
| ! | GAAAATCTTGCTCTTGTTTG+CGG | + | chr5_2:56730773-56730792 | Msa0777630:CDS | 35.0% |
| CTAAGAAAGTGGTGAAACAT+TGG | + | chr5_2:56730957-56730976 | Msa0777630:CDS | 35.0% | |
| !! | ACACCTTGGTTTTTCTGAAA+AGG | + | chr5_2:56731134-56731153 | Msa0777630:intron | 35.0% |
| !! | CACCTTGGTTTTTCTGAAAA+GGG | + | chr5_2:56731135-56731154 | Msa0777630:intron | 35.0% |
| !! | TCCCTGCATCATTACTTTTA+TGG | + | chr5_2:56731343-56731362 | Msa0777630:intron | 35.0% |
| CTTCAACATTACCTCATTGA+AGG | + | chr5_2:56731715-56731734 | Msa0777630:CDS | 35.0% | |
| ! | ATGATGGAAAATCAAAGGAG+TGG | + | chr5_2:56730678-56730697 | Msa0777630:CDS | 35.0% |
| AAAATCAAAGGAGTGGACAT+GGG | + | chr5_2:56730685-56730704 | Msa0777630:CDS | 35.0% | |
| ! | TATCTTGAGGAAGTACAAGA+AGG | + | chr5_2:56730743-56730762 | Msa0777630:CDS | 35.0% |
| ! | GAAAATCTTGCTCTTGTTTG+CGG | + | chr5_2:56730773-56730792 | Msa0777630:CDS | 35.0% |
| CTAAGAAAGTGGTGAAACAT+TGG | + | chr5_2:56730957-56730976 | Msa0777630:CDS | 35.0% | |
| !! | ACACCTTGGTTTTTCTGAAA+AGG | + | chr5_2:56731134-56731153 | Msa0777630:intron | 35.0% |
| !! | CACCTTGGTTTTTCTGAAAA+GGG | + | chr5_2:56731135-56731154 | Msa0777630:intron | 35.0% |
| !! | TCCCTGCATCATTACTTTTA+TGG | + | chr5_2:56731343-56731362 | Msa0777630:intron | 35.0% |
| CTTCAACATTACCTCATTGA+AGG | + | chr5_2:56731715-56731734 | Msa0777630:CDS | 35.0% | |
| GAAAATCAAAGGAGTGGACA+TGG | + | chr5_2:56730684-56730703 | Msa0777630:CDS | 40.0% | |
| ATTGGAGTGAAGAAGAACAC+AGG | + | chr5_2:56730975-56730994 | Msa0777630:CDS | 40.0% | |
| ! | GTCCCTTTTCAGAAAAACCA+AGG | - | chr5_2:56731140-56731159 | None:intergenic | 40.0% |
| GGGATCGAGATTCATAAGAA+GGG | + | chr5_2:56731569-56731588 | Msa0777630:CDS | 40.0% | |
| ! | GAAGGAAATGCTTTTGAGCA+TGG | - | chr5_2:56731652-56731671 | None:intergenic | 40.0% |
| TTCCAAACCTCTTCTCAGTA+AGG | + | chr5_2:56731745-56731764 | Msa0777630:CDS | 40.0% | |
| ATGTTGTCCTTACTGAGAAG+AGG | - | chr5_2:56731755-56731774 | None:intergenic | 40.0% | |
| AAATTTCCATCCCATGAGGT+AGG | - | chr5_2:56731788-56731807 | None:intergenic | 40.0% | |
| GAAAATCAAAGGAGTGGACA+TGG | + | chr5_2:56730684-56730703 | Msa0777630:CDS | 40.0% | |
| ATTGGAGTGAAGAAGAACAC+AGG | + | chr5_2:56730975-56730994 | Msa0777630:CDS | 40.0% | |
| ! | GTCCCTTTTCAGAAAAACCA+AGG | - | chr5_2:56731140-56731159 | None:intergenic | 40.0% |
| GGGATCGAGATTCATAAGAA+GGG | + | chr5_2:56731569-56731588 | Msa0777630:CDS | 40.0% | |
| ! | GAAGGAAATGCTTTTGAGCA+TGG | - | chr5_2:56731652-56731671 | None:intergenic | 40.0% |
| TTCCAAACCTCTTCTCAGTA+AGG | + | chr5_2:56731745-56731764 | Msa0777630:CDS | 40.0% | |
| ATGTTGTCCTTACTGAGAAG+AGG | - | chr5_2:56731755-56731774 | None:intergenic | 40.0% | |
| AAATTTCCATCCCATGAGGT+AGG | - | chr5_2:56731788-56731807 | None:intergenic | 40.0% | |
| ! | AGGAAGTACAAGAAGGTCGA+TGG | + | chr5_2:56730750-56730769 | Msa0777630:CDS | 45.0% |
| ! | GGAAGTACAAGAAGGTCGAT+GGG | + | chr5_2:56730751-56730770 | Msa0777630:CDS | 45.0% |
| GCATGACTTAGCACTCATTG+AGG | + | chr5_2:56730838-56730857 | Msa0777630:CDS | 45.0% | |
| GACTTAGCACTCATTGAGGA+AGG | + | chr5_2:56730842-56730861 | Msa0777630:CDS | 45.0% | |
| CGGAATTCACACCATGCATA+AGG | - | chr5_2:56731079-56731098 | None:intergenic | 45.0% | |
| GGGGATCGAGATTCATAAGA+AGG | + | chr5_2:56731568-56731587 | Msa0777630:CDS | 45.0% | |
| GGAATGATCTCCCTTCAATG+AGG | - | chr5_2:56731729-56731748 | None:intergenic | 45.0% | |
| GTCCTTACTGAGAAGAGGTT+TGG | - | chr5_2:56731750-56731769 | None:intergenic | 45.0% | |
| GTGGAAATTTCCATCCCATG+AGG | - | chr5_2:56731792-56731811 | None:intergenic | 45.0% | |
| GAGCTGGAACATAGAGAAGA+GGG | - | chr5_2:56731814-56731833 | None:intergenic | 45.0% | |
| AGAGCTGGAACATAGAGAAG+AGG | - | chr5_2:56731815-56731834 | None:intergenic | 45.0% | |
| GGATGAGGATAAAGAAGAGC+TGG | - | chr5_2:56731830-56731849 | None:intergenic | 45.0% | |
| ! | AGGAAGTACAAGAAGGTCGA+TGG | + | chr5_2:56730750-56730769 | Msa0777630:CDS | 45.0% |
| ! | GGAAGTACAAGAAGGTCGAT+GGG | + | chr5_2:56730751-56730770 | Msa0777630:CDS | 45.0% |
| GCATGACTTAGCACTCATTG+AGG | + | chr5_2:56730838-56730857 | Msa0777630:CDS | 45.0% | |
| GACTTAGCACTCATTGAGGA+AGG | + | chr5_2:56730842-56730861 | Msa0777630:CDS | 45.0% | |
| CGGAATTCACACCATGCATA+AGG | - | chr5_2:56731079-56731098 | None:intergenic | 45.0% | |
| GGGGATCGAGATTCATAAGA+AGG | + | chr5_2:56731568-56731587 | Msa0777630:CDS | 45.0% | |
| GGAATGATCTCCCTTCAATG+AGG | - | chr5_2:56731729-56731748 | None:intergenic | 45.0% | |
| GTCCTTACTGAGAAGAGGTT+TGG | - | chr5_2:56731750-56731769 | None:intergenic | 45.0% | |
| GTGGAAATTTCCATCCCATG+AGG | - | chr5_2:56731792-56731811 | None:intergenic | 45.0% | |
| GAGCTGGAACATAGAGAAGA+GGG | - | chr5_2:56731814-56731833 | None:intergenic | 45.0% | |
| AGAGCTGGAACATAGAGAAG+AGG | - | chr5_2:56731815-56731834 | None:intergenic | 45.0% | |
| GGATGAGGATAAAGAAGAGC+TGG | - | chr5_2:56731830-56731849 | None:intergenic | 45.0% | |
| TGTGGACGAGTCCTTATGCA+TGG | + | chr5_2:56731065-56731084 | Msa0777630:intron | 50.0% | |
| ! | GCATGGCTAGCACATTGACT+TGG | - | chr5_2:56731635-56731654 | None:intergenic | 50.0% |
| TTCCATCTCCTCCTACCTCA+TGG | + | chr5_2:56731774-56731793 | Msa0777630:CDS | 50.0% | |
| TCCATCTCCTCCTACCTCAT+GGG | + | chr5_2:56731775-56731794 | Msa0777630:CDS | 50.0% | |
| TTTCCATCCCATGAGGTAGG+AGG | - | chr5_2:56731785-56731804 | None:intergenic | 50.0% | |
| CTGGAACATAGAGAAGAGGG+TGG | - | chr5_2:56731811-56731830 | None:intergenic | 50.0% | |
| TGTGGACGAGTCCTTATGCA+TGG | + | chr5_2:56731065-56731084 | Msa0777630:intron | 50.0% | |
| ! | GCATGGCTAGCACATTGACT+TGG | - | chr5_2:56731635-56731654 | None:intergenic | 50.0% |
| TTCCATCTCCTCCTACCTCA+TGG | + | chr5_2:56731774-56731793 | Msa0777630:CDS | 50.0% | |
| TCCATCTCCTCCTACCTCAT+GGG | + | chr5_2:56731775-56731794 | Msa0777630:CDS | 50.0% | |
| TTTCCATCCCATGAGGTAGG+AGG | - | chr5_2:56731785-56731804 | None:intergenic | 50.0% | |
| CTGGAACATAGAGAAGAGGG+TGG | - | chr5_2:56731811-56731830 | None:intergenic | 50.0% | |
| TCCCATGAGGTAGGAGGAGA+TGG | - | chr5_2:56731779-56731798 | None:intergenic | 55.0% | |
| TCTCCTCCTACCTCATGGGA+TGG | + | chr5_2:56731779-56731798 | Msa0777630:CDS | 55.0% | |
| TCCCATGAGGTAGGAGGAGA+TGG | - | chr5_2:56731779-56731798 | None:intergenic | 55.0% | |
| TCTCCTCCTACCTCATGGGA+TGG | + | chr5_2:56731779-56731798 | Msa0777630:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 56730638 | 56731856 | 56730638 | ID=Msa0777630;Name=Msa0777630 |
| chr5_2 | mRNA | 56730638 | 56731856 | 56730638 | ID=Msa0777630-mRNA-1;Parent=Msa0777630;Name=Msa0777630-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|219 |
| chr5_2 | exon | 56730638 | 56730996 | 56730638 | ID=Msa0777630-mRNA-1:exon:16780;Parent=Msa0777630-mRNA-1 |
| chr5_2 | exon | 56731556 | 56731856 | 56731556 | ID=Msa0777630-mRNA-1:exon:16781;Parent=Msa0777630-mRNA-1 |
| chr5_2 | CDS | 56730638 | 56730996 | 56730638 | ID=Msa0777630-mRNA-1:cds;Parent=Msa0777630-mRNA-1 |
| chr5_2 | CDS | 56731556 | 56731856 | 56731556 | ID=Msa0777630-mRNA-1:cds;Parent=Msa0777630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
