AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0778530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0778530 MtrunA17_Chr5g0434571 90.798 326 9 3 1 311 37 356 0.0 533
Msa0778530 MtrunA17_Chr3g0110351 64.865 333 73 10 1 311 1 311 5.21e-126 362
Msa0778530 MtrunA17_Chr4g0057031 79.470 151 30 1 1 150 1 151 1.31e-84 256
Msa0778530 MtrunA17_Chr7g0228891 79.845 129 26 0 1 129 1 129 8.52e-76 233
Msa0778530 MtrunA17_Chr4g0039971 72.656 128 35 0 1 128 2 129 2.10e-67 214
Msa0778530 MtrunA17_Chr6g0453471 68.310 142 43 1 1 140 1 142 4.98e-67 213
Msa0778530 MtrunA17_Chr7g0217741 71.094 128 37 0 1 128 1 128 4.35e-66 209
Msa0778530 MtrunA17_Chr8g0349261 72.593 135 35 2 1 133 1 135 7.01e-66 208
Msa0778530 MtrunA17_Chr3g0115821 70.312 128 38 0 1 128 1 128 1.93e-65 209
Msa0778530 MtrunA17_Chr4g0042671 72.656 128 35 0 1 128 1 128 9.42e-65 209
Msa0778530 MtrunA17_Chr5g0410961 69.531 128 39 0 1 128 1 128 1.49e-63 204
Msa0778530 MtrunA17_Chr4g0037141 53.261 184 70 3 1 179 1 173 2.84e-63 201
Msa0778530 MtrunA17_Chr2g0281071 69.767 129 38 1 1 128 1 129 1.85e-62 201
Msa0778530 MtrunA17_Chr2g0323411 70.312 128 38 0 1 128 1 128 1.95e-62 201
Msa0778530 MtrunA17_Chr4g0048511 68.992 129 39 1 1 128 1 129 6.55e-62 200
Msa0778530 MtrunA17_Chr1g0193371 66.923 130 43 0 1 130 1 130 5.21e-61 198
Msa0778530 MtrunA17_Chr7g0270891 48.756 201 97 2 1 201 1 195 1.19e-60 197
Msa0778530 MtrunA17_Chr3g0131121 64.444 135 48 0 1 135 1 135 3.63e-60 194
Msa0778530 MtrunA17_Chr5g0395281 64.844 128 45 0 1 128 1 128 6.92e-60 193
Msa0778530 MtrunA17_Chr8g0385321 65.116 129 45 0 1 129 1 129 1.30e-59 193
Msa0778530 MtrunA17_Chr1g0193801 46.083 217 106 4 1 214 1 209 1.43e-59 195
Msa0778530 MtrunA17_Chr3g0103281 59.864 147 59 0 1 147 1 147 3.30e-59 192
Msa0778530 MtrunA17_Chr3g0117091 65.891 129 44 0 1 129 1 129 7.74e-59 192
Msa0778530 MtrunA17_Chr1g0211161 66.929 127 42 0 3 129 4 130 2.49e-58 187
Msa0778530 MtrunA17_Chr4g0058631 66.154 130 44 0 1 130 1 130 2.58e-58 191
Msa0778530 MtrunA17_Chr5g0435101 63.200 125 46 0 3 127 2 126 2.09e-57 184
Msa0778530 MtrunA17_Chr3g0121241 53.571 168 76 1 5 170 35 202 2.13e-57 187
Msa0778530 MtrunA17_Chr7g0261281 70.690 116 34 0 1 116 1 116 7.21e-57 185
Msa0778530 MtrunA17_Chr7g0271241 66.176 136 46 0 1 136 1 136 9.53e-57 187
Msa0778530 MtrunA17_Chr6g0452271 60.769 130 51 0 1 130 1 130 1.67e-55 183
Msa0778530 MtrunA17_Chr1g0187761 38.710 279 130 6 1 268 1 249 1.66e-54 178
Msa0778530 MtrunA17_Chr2g0309911 61.654 133 50 1 1 133 1 132 6.17e-54 178
Msa0778530 MtrunA17_Chr4g0068061 65.517 116 40 0 1 116 1 116 6.66e-54 179
Msa0778530 MtrunA17_Chr7g0274581 63.559 118 43 0 1 118 1 118 7.09e-54 175
Msa0778530 MtrunA17_Chr1g0194951 63.281 128 47 0 1 128 1 128 7.70e-54 180
Msa0778530 MtrunA17_Chr7g0275911 64.103 117 42 0 1 117 1 117 3.74e-53 174
Msa0778530 MtrunA17_Chr3g0092401 63.866 119 43 0 1 119 2 120 6.65e-53 176
Msa0778530 MtrunA17_Chr1g0203411 61.864 118 45 0 1 118 1 118 6.84e-53 175
Msa0778530 MtrunA17_Chr7g0217221 67.797 118 38 0 1 118 1 118 7.51e-53 174
Msa0778530 MtrunA17_Chr4g0060721 62.712 118 44 0 1 118 2 119 1.56e-52 175
Msa0778530 MtrunA17_Chr8g0342521 62.602 123 46 0 1 123 1 123 2.99e-52 175
Msa0778530 MtrunA17_Chr4g0044421 64.000 125 44 1 3 126 2 126 3.24e-52 170
Msa0778530 MtrunA17_Chr8g0346561 62.712 118 44 0 1 118 1 118 3.66e-52 173
Msa0778530 MtrunA17_Chr1g0167691 65.517 116 40 0 1 116 1 116 4.90e-52 171
Msa0778530 MtrunA17_Chr2g0330041 61.600 125 48 0 1 125 1 125 7.11e-52 175
Msa0778530 MtrunA17_Chr1g0167661 66.379 116 39 0 1 116 1 116 7.39e-52 171
Msa0778530 MtrunA17_Chr8g0342541 61.789 123 47 0 1 123 1 123 4.63e-51 172
Msa0778530 MtrunA17_Chr7g0254411 62.400 125 45 1 1 123 1 125 6.41e-51 171
Msa0778530 MtrunA17_Chr8g0387421 61.864 118 45 0 1 118 1 118 1.25e-50 170
Msa0778530 MtrunA17_Chr7g0269831 68.103 116 37 0 1 116 1 116 2.71e-50 170
Msa0778530 MtrunA17_Chr8g0342481 64.103 117 41 1 1 116 1 117 3.58e-50 171
Msa0778530 MtrunA17_Chr4g0070611 63.025 119 44 0 1 119 1 119 1.22e-49 167
Msa0778530 MtrunA17_Chr4g0022901 62.069 116 43 1 1 115 1 116 2.71e-49 165
Msa0778530 MtrunA17_Chr2g0311221 67.273 110 36 0 2 111 4 113 3.83e-49 166
Msa0778530 MtrunA17_Chr4g0022911 60.345 116 45 1 1 115 1 116 4.34e-49 165
Msa0778530 MtrunA17_Chr2g0323351 63.559 118 43 0 1 118 1 118 5.13e-49 164
Msa0778530 MtrunA17_Chr4g0022931 58.400 125 51 1 1 124 1 125 5.48e-49 164
Msa0778530 MtrunA17_Chr4g0070641 63.025 119 44 0 1 119 1 119 6.79e-49 160
Msa0778530 MtrunA17_Chr5g0417821 62.185 119 45 0 10 128 5 123 1.24e-48 164
Msa0778530 MtrunA17_Chr4g0032401 57.895 133 49 1 12 144 17 142 7.86e-48 163
Msa0778530 MtrunA17_Chr5g0397231 61.818 110 42 0 1 110 1 110 1.66e-47 162
Msa0778530 MtrunA17_Chr6g0453211 63.964 111 40 0 1 111 1 111 2.14e-47 161
Msa0778530 MtrunA17_Chr1g0151941 41.837 196 108 4 1 190 1 196 3.47e-47 159
Msa0778530 MtrunA17_Chr2g0328771 64.815 108 38 0 12 119 20 127 6.72e-47 160
Msa0778530 MtrunA17_Chr5g0400821 59.829 117 46 1 1 116 1 117 5.69e-45 155
Msa0778530 MtrunA17_Chr4g0028311 53.906 128 58 1 1 127 1 128 6.94e-45 155
Msa0778530 MtrunA17_Chr7g0247131 76.136 88 21 0 43 130 9 96 9.42e-45 153
Msa0778530 MtrunA17_Chr1g0152011 59.829 117 46 1 1 116 1 117 1.30e-44 155
Msa0778530 MtrunA17_Chr3g0088461 61.818 110 42 0 8 117 18 127 1.54e-44 155
Msa0778530 MtrunA17_Chr7g0264641 57.500 120 50 1 1 119 1 120 1.76e-44 152
Msa0778530 MtrunA17_Chr6g0470971 52.113 142 65 2 1 140 1 141 2.34e-44 152
Msa0778530 MtrunA17_Chr4g0022881 57.895 114 48 0 1 114 1 114 5.24e-44 150
Msa0778530 MtrunA17_Chr1g0168661 63.810 105 38 0 13 117 22 126 6.88e-44 150
Msa0778530 MtrunA17_Chr4g0022891 49.324 148 71 1 1 144 1 148 7.04e-44 150
Msa0778530 MtrunA17_Chr1g0203441 58.824 119 48 1 1 118 1 119 1.32e-43 150
Msa0778530 MtrunA17_Chr7g0228231 60.748 107 42 0 12 118 14 120 2.15e-43 148
Msa0778530 MtrunA17_Chr8g0354661 60.185 108 43 0 10 117 35 142 3.74e-43 155
Msa0778530 MtrunA17_Chr1g0186061 61.905 105 40 0 13 117 21 125 6.70e-43 148
Msa0778530 MtrunA17_Chr6g0450101 55.372 121 52 1 1 119 1 121 8.08e-43 146
Msa0778530 MtrunA17_Chr3g0135311 57.265 117 49 1 1 116 1 117 1.32e-42 150
Msa0778530 MtrunA17_Chr2g0327351 58.559 111 45 1 1 110 1 111 1.92e-42 149
Msa0778530 MtrunA17_Chr1g0209661 55.856 111 49 0 12 122 27 137 6.36e-42 147
Msa0778530 MtrunA17_Chr1g0194291 54.783 115 52 0 8 122 17 131 8.88e-42 145
Msa0778530 MtrunA17_Chr4g0072751 58.559 111 45 1 1 110 1 111 1.66e-41 147
Msa0778530 MtrunA17_Chr3g0099131 58.879 107 44 0 12 118 41 147 2.19e-41 150
Msa0778530 MtrunA17_Chr4g0054391 59.091 110 44 1 1 109 1 110 3.30e-41 144
Msa0778530 MtrunA17_Chr1g0194301 52.174 115 55 0 8 122 29 143 2.90e-40 142
Msa0778530 MtrunA17_Chr2g0327821 51.163 129 61 1 12 138 6 134 3.92e-40 140
Msa0778530 MtrunA17_Chr6g0487491 40.000 205 104 7 1 195 1 196 4.35e-40 141
Msa0778530 MtrunA17_Chr3g0080861 55.556 108 48 0 10 117 35 142 4.41e-40 146
Msa0778530 MtrunA17_Chr1g0180391 52.632 114 54 0 4 117 11 124 2.39e-38 135
Msa0778530 MtrunA17_Chr4g0055981 55.556 117 52 0 9 125 52 168 3.16e-38 135
Msa0778530 MtrunA17_Chr2g0294811 67.045 88 29 0 1 88 1 88 9.02e-38 130
Msa0778530 MtrunA17_Chr1g0154031 56.731 104 45 0 12 115 76 179 9.47e-38 138
Msa0778530 MtrunA17_Chr2g0293911 53.043 115 54 0 8 122 20 134 1.09e-37 136
Msa0778530 MtrunA17_Chr4g0030881 55.455 110 42 1 13 115 8 117 1.41e-37 134
Msa0778530 MtrunA17_Chr8g0343831 57.944 107 45 0 12 118 8 114 1.80e-37 134
Msa0778530 MtrunA17_Chr4g0068921 53.043 115 54 0 8 122 20 134 2.13e-37 132
Msa0778530 MtrunA17_Chr7g0240821 36.777 242 124 6 16 247 5 227 4.42e-37 132
Msa0778530 MtrunA17_Chr2g0322521 57.798 109 46 0 9 117 26 134 5.38e-37 136
Msa0778530 MtrunA17_Chr4g0042611 67.045 88 29 0 1 88 1 88 1.80e-36 126
Msa0778530 MtrunA17_Chr8g0342461 61.111 90 34 1 1 89 1 90 5.44e-34 121
Msa0778530 MtrunA17_Chr5g0434931 54.717 106 48 0 11 116 34 139 5.50e-34 125
Msa0778530 MtrunA17_Chr8g0342511 60.920 87 34 0 1 87 1 87 5.85e-34 120
Msa0778530 MtrunA17_Chr5g0434911 52.727 110 52 0 7 116 16 125 6.71e-34 125
Msa0778530 MtrunA17_Chr5g0440781 44.286 140 74 3 13 149 13 151 9.69e-34 122
Msa0778530 MtrunA17_Chr8g0342471 61.111 90 34 1 1 89 1 90 1.17e-33 120
Msa0778530 MtrunA17_Chr8g0342531 59.551 89 36 0 1 89 1 89 2.12e-33 120
Msa0778530 MtrunA17_Chr5g0440761 44.286 140 74 3 13 149 13 151 4.12e-33 122
Msa0778530 MtrunA17_Chr7g0220341 54.128 109 48 1 10 116 23 131 4.37e-33 123
Msa0778530 MtrunA17_Chr5g0441141 44.286 140 74 3 13 149 13 151 4.37e-33 123
Msa0778530 MtrunA17_Chr5g0434831 54.717 106 48 0 11 116 6 111 2.75e-32 118
Msa0778530 MtrunA17_Chr7g0228991 53.774 106 49 0 11 116 28 133 1.13e-31 119
Msa0778530 MtrunA17_Chr1g0192411 49.091 110 56 0 8 117 8 117 1.49e-31 122
Msa0778530 MtrunA17_Chr8g0360111 53.922 102 47 0 11 112 24 125 4.84e-31 117
Msa0778530 MtrunA17_Chr5g0395221 59.524 84 34 0 5 88 5 88 7.35e-31 111
Msa0778530 MtrunA17_Chr3g0099141 55.172 87 39 0 8 94 36 122 1.06e-30 112
Msa0778530 MtrunA17_Chr5g0434841 52.830 106 50 0 11 116 19 124 1.09e-30 117
Msa0778530 MtrunA17_Chr2g0323321 57.609 92 38 1 1 92 1 91 1.41e-30 111
Msa0778530 MtrunA17_Chr3g0093811 54.545 88 40 0 43 130 13 100 1.83e-29 113
Msa0778530 MtrunA17_Chr5g0429661 51.429 105 48 2 12 115 120 222 5.70e-29 114
Msa0778530 MtrunA17_Chr5g0441131 48.276 116 58 2 10 124 7 121 1.07e-28 108
Msa0778530 MtrunA17_Chr8g0334881 48.148 108 55 1 8 114 6 113 1.56e-28 112
Msa0778530 MtrunA17_Chr4g0013361 49.038 104 52 1 12 114 10 113 2.20e-28 111
Msa0778530 MtrunA17_Chr6g0480581 36.686 169 95 5 14 174 4 168 1.23e-26 105
Msa0778530 MtrunA17_Chr3g0133601 48.544 103 50 2 14 115 37 137 1.64e-26 104
Msa0778530 MtrunA17_Chr6g0454921 32.143 196 122 5 14 208 15 200 2.94e-26 103
Msa0778530 MtrunA17_Chr4g0053431 34.272 213 125 6 14 216 5 212 3.56e-26 104
Msa0778530 MtrunA17_Chr3g0117511 44.144 111 59 2 9 118 178 286 4.89e-26 107
Msa0778530 MtrunA17_Chr4g0058991 45.045 111 58 2 9 118 204 312 2.05e-25 105
Msa0778530 MtrunA17_Chr4g0008551 44.737 114 56 3 14 126 38 145 6.41e-25 102
Msa0778530 MtrunA17_Chr7g0238631 49.057 106 51 2 12 116 111 214 9.30e-25 104
Msa0778530 MtrunA17_Chr5g0401731 43.333 120 65 2 14 132 15 132 9.35e-25 102
Msa0778530 MtrunA17_Chr3g0139671 44.340 106 56 2 12 116 83 186 5.27e-23 99.4
Msa0778530 MtrunA17_Chr6g0453751 50.000 92 37 2 11 93 19 110 8.63e-23 91.7
Msa0778530 MtrunA17_Chr7g0229101 57.746 71 30 0 43 113 3 73 3.65e-22 92.4
Msa0778530 MtrunA17_Chr7g0228531 44.762 105 56 2 14 118 220 322 9.43e-22 94.7
Msa0778530 MtrunA17_Chr1g0157731 44.340 106 56 2 12 116 89 192 1.48e-21 95.1
Msa0778530 MtrunA17_Chr6g0460661 41.739 115 63 3 14 127 16 127 1.98e-21 89.0
Msa0778530 MtrunA17_Chr5g0425591 49.412 85 42 1 10 93 7 91 3.41e-21 86.3
Msa0778530 MtrunA17_Chr7g0229131 52.703 74 35 0 43 116 3 76 3.43e-21 88.6
Msa0778530 MtrunA17_Chr5g0437321 43.396 106 54 3 8 112 16 116 4.17e-21 91.3
Msa0778530 MtrunA17_Chr7g0233061 43.925 107 50 4 14 117 180 279 1.67e-20 90.5
Msa0778530 MtrunA17_Chr5g0434901 56.061 66 29 0 48 113 9 74 3.07e-20 84.3
Msa0778530 MtrunA17_Chr4g0042501 41.509 106 59 2 14 118 105 208 1.01e-19 89.0
Msa0778530 MtrunA17_Chr5g0417621 41.509 106 59 2 14 118 134 237 1.02e-19 89.0
Msa0778530 MtrunA17_Chr5g0397841 45.455 99 51 2 12 109 108 204 1.82e-18 85.5
Msa0778530 MtrunA17_Chr1g0177901 37.008 127 70 3 25 143 5 129 3.61e-18 81.3
Msa0778530 MtrunA17_Chr5g0395231 64.706 51 18 0 78 128 5 55 7.81e-18 81.3
Msa0778530 MtrunA17_Chr7g0228481 40.909 110 60 3 14 120 220 327 1.22e-17 82.8
Msa0778530 MtrunA17_Chr7g0228401 34.711 121 48 2 17 110 258 374 1.37e-17 83.2
Msa0778530 MtrunA17_Chr6g0460671 39.252 107 62 2 14 119 99 203 1.59e-17 82.0
Msa0778530 MtrunA17_Chr3g0125801 41.509 106 59 2 14 118 16 119 6.34e-17 79.3
Msa0778530 MtrunA17_Chr7g0238651 37.931 116 64 2 17 124 10 125 9.43e-17 79.7
Msa0778530 MtrunA17_Chr7g0254261 37.121 132 76 3 9 135 80 209 1.28e-16 79.3
Msa0778530 MtrunA17_Chr7g0247141 62.500 48 17 1 1 47 1 48 4.61e-16 71.6
Msa0778530 MtrunA17_Chr4g0042621 75.000 40 10 0 89 128 15 54 2.55e-14 72.4
Msa0778530 MtrunA17_Chr3g0145551 65.909 44 15 0 92 135 2 45 6.51e-13 63.5
Msa0778530 MtrunA17_Chr5g0416341 37.624 101 62 1 17 117 29 128 6.66e-13 68.9
Msa0778530 MtrunA17_Chr1g0193901 45.238 84 44 2 12 93 11 94 4.19e-12 62.0
Msa0778530 MtrunA17_Chr1g0193891 45.238 84 44 2 12 93 11 94 4.19e-12 62.0
Msa0778530 MtrunA17_Chr1g0193871 45.238 84 44 2 12 93 11 94 4.19e-12 62.0
Msa0778530 MtrunA17_Chr1g0193881 45.238 84 44 2 12 93 11 94 4.19e-12 62.0
Msa0778530 MtrunA17_Chr5g0434871 58.140 43 18 0 74 116 2 44 4.55e-12 60.8
Msa0778530 MtrunA17_Chr3g0104491 40.299 67 36 1 53 115 1 67 2.55e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0778530 AT5G16600.1 48.442 353 114 7 1 311 1 327 5.57e-103 305
Msa0778530 AT1G66230.1 58.966 290 89 5 1 276 1 274 2.43e-102 301
Msa0778530 AT4G22680.1 71.779 163 45 1 1 162 1 163 7.00e-82 249
Msa0778530 AT4G12350.1 86.047 129 18 0 1 129 1 129 3.49e-80 245
Msa0778530 AT5G14340.1 70.213 141 41 1 1 140 13 153 2.63e-71 222
Msa0778530 AT5G62320.1 72.180 133 30 1 2 127 3 135 2.84e-67 211
Msa0778530 AT3G02940.2 71.875 128 36 0 1 128 1 128 7.69e-67 212
Msa0778530 AT3G02940.1 71.875 128 36 0 1 128 1 128 1.72e-66 211
Msa0778530 AT3G02940.3 71.875 128 36 0 1 128 1 128 1.72e-66 211
Msa0778530 AT3G61250.1 65.517 145 50 0 1 145 1 145 1.79e-66 211
Msa0778530 AT5G15310.1 71.094 128 37 0 1 128 1 128 1.07e-65 209
Msa0778530 AT5G15310.2 71.094 128 37 0 1 128 1 128 1.49e-65 209
Msa0778530 AT5G15310.4 71.094 128 37 0 1 128 1 128 1.81e-65 206
Msa0778530 AT3G01140.2 66.197 142 46 1 1 140 1 142 3.49e-65 209
Msa0778530 AT4G28110.1 69.531 128 39 0 1 128 1 128 3.80e-65 206
Msa0778530 AT5G16770.4 70.312 128 38 0 1 128 1 128 4.80e-65 207
Msa0778530 AT5G16770.3 70.312 128 38 0 1 128 1 128 4.80e-65 207
Msa0778530 AT5G16770.1 70.312 128 38 0 1 128 1 128 1.21e-64 207
Msa0778530 AT5G16770.2 70.312 128 38 0 1 128 1 128 1.21e-64 207
Msa0778530 AT1G34670.1 70.312 128 38 0 1 128 1 128 6.66e-64 206
Msa0778530 AT4G21440.1 55.556 171 66 1 1 161 1 171 1.77e-63 204
Msa0778530 AT5G65230.1 70.312 128 38 0 1 128 1 128 2.21e-63 203
Msa0778530 AT5G10280.1 67.188 128 42 0 1 128 1 128 9.98e-63 202
Msa0778530 AT3G01140.1 65.942 138 45 1 5 140 48 185 6.75e-62 201
Msa0778530 AT4G05100.1 68.992 129 39 1 1 128 1 129 7.07e-62 199
Msa0778530 AT5G26660.1 68.217 129 41 0 1 129 1 129 8.85e-62 200
Msa0778530 AT5G61420.2 62.411 141 53 0 1 141 1 141 2.64e-61 199
Msa0778530 AT5G07690.1 63.830 141 50 1 1 140 1 141 3.79e-61 198
Msa0778530 AT4G38620.1 61.151 139 54 0 1 139 1 139 3.80e-61 196
Msa0778530 AT4G17785.2 68.217 129 40 1 1 128 1 129 4.40e-61 198
Msa0778530 AT4G17785.1 68.217 129 40 1 1 128 1 129 5.66e-61 198
Msa0778530 AT1G57560.1 67.692 130 42 0 1 130 1 130 7.37e-61 196
Msa0778530 AT1G57560.2 67.692 130 42 0 1 130 1 130 1.54e-60 194
Msa0778530 AT1G09540.1 67.692 130 42 0 1 130 1 130 1.19e-59 195
Msa0778530 AT2G16720.1 61.029 136 53 0 1 136 1 136 1.65e-59 192
Msa0778530 AT4G09460.1 59.028 144 59 0 1 144 1 144 1.94e-59 190
Msa0778530 AT1G18570.1 60.274 146 55 2 1 145 1 144 2.08e-59 194
Msa0778530 AT5G07700.1 63.910 133 48 0 1 133 1 133 9.35e-59 192
Msa0778530 AT5G07700.2 63.910 133 48 0 1 133 1 133 9.35e-59 192
Msa0778530 AT3G13540.1 47.030 202 90 3 5 204 16 202 2.34e-58 188
Msa0778530 AT1G06180.1 71.552 116 33 0 1 116 1 116 3.40e-58 187
Msa0778530 AT4G01680.3 60.544 147 56 1 1 145 1 147 6.03e-58 187
Msa0778530 AT4G34990.1 57.931 145 61 0 1 145 1 145 8.57e-58 187
Msa0778530 AT1G74080.1 55.215 163 71 1 1 161 1 163 8.75e-58 189
Msa0778530 AT5G56110.1 59.864 147 59 0 1 147 1 147 1.82e-57 188
Msa0778530 AT4G01680.1 60.544 147 56 1 1 145 1 147 2.21e-57 188
Msa0778530 AT1G22640.1 57.432 148 62 1 1 147 1 148 3.70e-57 185
Msa0778530 AT5G54230.1 66.406 128 43 0 1 128 1 128 6.83e-57 186
Msa0778530 AT1G35515.1 62.016 129 49 0 1 129 1 129 9.68e-57 182
Msa0778530 AT3G23250.1 57.823 147 50 1 1 135 1 147 1.20e-56 185
Msa0778530 AT2G31180.1 67.797 118 38 0 1 118 1 118 4.52e-56 182
Msa0778530 AT5G60890.1 58.741 143 56 1 1 143 1 140 4.99e-56 183
Msa0778530 AT3G47600.1 50.515 194 75 4 1 176 1 191 5.31e-56 184
Msa0778530 AT5G49330.1 66.379 116 39 0 1 116 1 116 4.60e-54 180
Msa0778530 AT4G01680.2 55.975 159 56 2 1 145 1 159 5.25e-54 180
Msa0778530 AT1G16490.1 67.826 115 37 0 2 116 4 118 1.03e-53 177
Msa0778530 AT2G47460.1 53.947 152 70 0 1 152 1 152 2.86e-53 179
Msa0778530 AT5G62470.2 64.706 119 42 0 1 119 1 119 3.31e-53 178
Msa0778530 AT1G08810.1 63.934 122 44 0 1 122 1 122 7.48e-53 175
Msa0778530 AT3G12720.1 40.000 250 115 5 1 216 12 260 9.38e-53 175
Msa0778530 AT3G28910.1 65.574 122 42 0 1 122 1 122 1.13e-52 176
Msa0778530 AT3G13890.2 47.312 186 96 1 1 186 1 184 1.15e-52 177
Msa0778530 AT1G56160.1 48.387 186 91 2 2 185 4 186 1.64e-52 174
Msa0778530 AT3G62610.1 65.517 116 40 0 1 116 1 116 2.30e-52 176
Msa0778530 AT3G28470.1 62.308 130 49 0 1 130 1 130 3.35e-52 174
Msa0778530 AT1G79180.1 65.812 117 40 0 2 118 4 120 3.94e-52 173
Msa0778530 AT5G62470.1 64.706 119 41 1 1 119 1 118 1.03e-51 174
Msa0778530 AT1G74650.1 64.706 119 42 0 1 119 1 119 2.46e-51 172
Msa0778530 AT1G63910.1 59.375 128 52 0 1 128 1 128 2.63e-51 173
Msa0778530 AT3G12820.1 65.517 116 40 0 3 118 5 120 1.14e-50 168
Msa0778530 AT1G74430.1 60.156 128 51 0 1 128 1 128 5.22e-50 167
Msa0778530 AT3G13890.1 45.128 195 96 2 1 186 1 193 1.06e-49 169
Msa0778530 AT1G18710.1 57.364 129 55 0 1 129 1 129 2.68e-49 165
Msa0778530 AT5G12870.1 67.593 108 35 0 12 119 18 125 1.94e-47 161
Msa0778530 AT1G79180.2 51.333 150 40 1 2 118 4 153 2.41e-45 157
Msa0778530 AT3G08500.1 64.545 110 39 0 8 117 26 135 2.73e-45 157
Msa0778530 AT3G24310.1 64.486 107 38 0 11 117 17 123 7.15e-45 154
Msa0778530 AT3G01530.1 55.285 123 55 0 12 134 25 147 9.18e-45 152
Msa0778530 AT4G13480.1 65.714 105 36 0 13 117 7 111 1.15e-44 153
Msa0778530 AT5G23000.1 58.974 117 47 1 1 116 1 117 1.42e-44 155
Msa0778530 AT3G49690.1 59.829 117 46 1 1 116 1 117 1.52e-44 154
Msa0778530 AT5G65790.1 58.974 117 47 1 1 116 1 117 2.08e-44 155
Msa0778530 AT5G57620.1 58.974 117 47 1 1 116 1 117 2.63e-44 154
Msa0778530 AT2G36890.1 54.135 133 59 2 1 132 1 132 3.96e-44 153
Msa0778530 AT2G36890.2 54.135 133 59 2 1 132 42 173 6.41e-44 153
Msa0778530 AT5G40350.1 45.181 166 79 2 12 177 17 170 3.10e-43 148
Msa0778530 AT4G37780.1 56.410 117 50 1 1 116 1 117 6.48e-43 150
Msa0778530 AT2G32460.2 57.265 117 49 1 11 127 5 120 2.27e-42 152
Msa0778530 AT2G32460.1 57.265 117 49 1 11 127 17 132 2.40e-42 152
Msa0778530 AT3G27810.1 59.813 107 43 0 12 118 20 126 2.46e-42 146
Msa0778530 AT5G06100.1 56.364 110 48 0 8 117 28 137 3.93e-42 151
Msa0778530 AT5G14750.1 40.704 199 97 5 13 202 17 203 8.33e-42 144
Msa0778530 AT1G68320.1 56.757 111 48 0 12 122 19 129 8.68e-42 146
Msa0778530 AT5G06100.5 56.364 110 48 0 8 117 28 137 1.74e-41 150
Msa0778530 AT5G06100.2 56.364 110 48 0 8 117 28 137 1.74e-41 150
Msa0778530 AT5G06100.3 56.364 110 48 0 8 117 28 137 1.74e-41 150
Msa0778530 AT5G06100.4 56.364 110 48 0 8 117 28 137 1.74e-41 150
Msa0778530 AT3G06490.1 57.391 115 49 0 8 122 15 129 2.05e-41 146
Msa0778530 AT5G52260.1 57.600 125 47 2 13 131 13 137 2.21e-41 145
Msa0778530 AT5G55020.1 59.633 109 44 0 10 118 24 132 2.44e-41 150
Msa0778530 AT5G26660.2 74.118 85 22 0 45 129 14 98 6.33e-41 145
Msa0778530 AT1G25340.1 52.101 119 57 0 13 131 19 137 7.24e-41 144
Msa0778530 AT5G35550.1 39.070 215 98 4 12 197 14 224 8.48e-41 143
Msa0778530 AT3G11440.2 56.604 106 46 0 12 117 41 146 8.85e-41 148
Msa0778530 AT4G25560.1 61.165 103 40 0 13 115 11 113 1.34e-40 143
Msa0778530 AT3G11440.3 56.604 106 46 0 12 117 41 146 3.06e-40 148
Msa0778530 AT3G11440.4 56.604 106 46 0 12 117 41 146 3.06e-40 148
Msa0778530 AT3G11440.1 56.604 106 46 0 12 117 41 146 3.06e-40 148
Msa0778530 AT1G48000.1 53.982 113 52 0 10 122 30 142 3.56e-40 141
Msa0778530 AT5G40330.1 37.255 204 117 4 13 209 13 212 4.73e-40 140
Msa0778530 AT3G46130.1 57.391 115 47 1 11 123 8 122 5.16e-40 141
Msa0778530 AT5G59780.3 58.879 107 44 0 12 118 8 114 7.56e-40 140
Msa0778530 AT3G30210.1 57.944 107 45 0 11 117 26 132 1.07e-39 140
Msa0778530 AT2G47190.1 54.054 111 51 0 12 122 20 130 2.33e-39 139
Msa0778530 AT2G26960.1 57.522 113 47 1 9 121 17 128 1.28e-38 141
Msa0778530 AT4G26930.1 48.889 135 65 3 10 144 17 147 1.31e-38 140
Msa0778530 AT3G27920.1 55.769 104 46 0 13 116 15 118 9.18e-38 134
Msa0778530 AT3G48920.1 54.808 104 47 0 13 116 19 122 7.66e-37 132
Msa0778530 AT3G53200.1 56.731 104 45 0 12 115 9 112 8.59e-37 132
Msa0778530 AT5G52600.1 48.819 127 56 1 12 129 12 138 1.57e-36 130
Msa0778530 AT1G25340.2 49.580 119 55 1 13 131 19 132 1.77e-36 132
Msa0778530 AT5G49620.1 51.304 115 56 0 8 122 22 136 2.03e-36 133
Msa0778530 AT1G25340.3 49.580 119 55 1 13 131 19 132 3.48e-36 132
Msa0778530 AT3G47600.2 45.614 171 68 5 24 176 22 185 1.00e-35 131
Msa0778530 AT1G66370.1 54.783 115 48 1 1 115 1 111 4.09e-33 122
Msa0778530 AT5G49620.2 45.736 129 56 1 8 122 22 150 8.60e-33 124
Msa0778530 AT1G56650.1 53.435 131 52 2 11 133 7 136 4.97e-32 120
Msa0778530 AT1G66380.1 58.095 105 44 0 11 115 7 111 4.10e-31 114
Msa0778530 AT1G66390.1 59.048 105 43 0 11 115 7 111 9.37e-31 116
Msa0778530 AT5G35550.2 37.766 188 84 4 39 197 44 227 1.08e-30 116
Msa0778530 AT5G14750.3 39.106 179 83 6 38 202 3 169 1.14e-30 114
Msa0778530 AT5G40350.2 44.361 133 62 2 45 177 5 125 7.18e-30 112
Msa0778530 AT3G60460.1 50.962 104 50 1 12 114 11 114 1.18e-29 115
Msa0778530 AT3G12820.2 69.444 72 22 0 47 118 1 72 1.25e-29 112
Msa0778530 AT3G46130.3 60.227 88 33 1 38 123 3 90 1.27e-29 112
Msa0778530 AT3G27810.2 64.865 74 26 0 45 118 4 77 1.28e-29 111
Msa0778530 AT2G26950.1 47.788 113 58 1 9 121 13 124 2.10e-29 115
Msa0778530 AT3G46130.4 64.198 81 27 1 45 123 20 100 3.14e-29 112
Msa0778530 AT5G59780.2 66.216 74 25 0 45 118 20 93 3.54e-29 111
Msa0778530 AT1G18960.1 45.299 117 61 2 14 130 10 123 9.53e-29 112
Msa0778530 AT3G53200.2 67.606 71 23 0 45 115 9 79 3.84e-28 108
Msa0778530 AT5G58850.1 49.074 108 52 2 12 118 103 208 5.31e-28 112
Msa0778530 AT5G11050.1 47.573 103 51 2 14 115 105 205 1.13e-27 111
Msa0778530 AT4G18770.1 47.748 111 55 2 9 118 212 320 2.83e-27 110
Msa0778530 AT1G22640.3 56.667 90 38 1 59 147 2 91 1.41e-26 104
Msa0778530 AT1G71030.2 46.729 107 50 2 51 157 5 104 1.00e-25 101
Msa0778530 AT1G71030.1 46.729 107 50 2 51 157 19 118 1.36e-25 101
Msa0778530 AT5G02320.1 37.931 145 83 3 12 151 125 267 1.04e-24 104
Msa0778530 AT5G02320.2 37.931 145 83 3 12 151 125 267 1.04e-24 104
Msa0778530 AT5G02320.3 37.931 145 83 3 12 151 65 207 1.16e-24 103
Msa0778530 AT3G27785.1 42.222 135 68 4 9 140 184 311 2.06e-24 102
Msa0778530 AT2G39880.1 49.057 106 45 2 14 115 50 150 2.20e-24 102
Msa0778530 AT3G55730.1 42.177 147 67 5 14 148 56 196 3.01e-24 102
Msa0778530 AT3G50060.1 32.127 221 125 8 14 227 6 208 4.38e-24 100
Msa0778530 AT3G09370.2 46.667 105 53 2 12 115 133 235 6.18e-24 102
Msa0778530 AT3G09370.1 46.667 105 53 2 12 115 128 230 6.22e-24 102
Msa0778530 AT3G09370.3 46.667 105 53 2 12 115 141 243 7.53e-24 101
Msa0778530 AT3G09230.1 45.794 107 49 2 14 116 55 156 2.15e-23 99.4
Msa0778530 AT5G67300.1 45.631 103 53 2 14 115 6 106 2.23e-23 98.2
Msa0778530 AT5G40360.1 40.741 108 62 2 12 119 156 261 8.82e-23 97.4
Msa0778530 AT5G11510.3 44.340 106 56 2 12 116 79 182 1.91e-22 98.2
Msa0778530 AT5G11510.1 44.340 106 56 2 12 116 79 182 1.91e-22 98.2
Msa0778530 AT5G11510.4 44.340 106 56 2 12 116 79 182 1.91e-22 98.2
Msa0778530 AT4G37260.1 45.631 103 53 2 14 115 13 113 2.05e-22 95.9
Msa0778530 AT5G11510.2 44.340 106 56 2 12 116 79 182 2.98e-22 97.8
Msa0778530 AT5G11510.5 44.340 106 56 2 12 116 79 182 3.58e-22 97.4
Msa0778530 AT1G66380.3 57.143 77 33 0 39 115 2 78 1.04e-21 88.6
Msa0778530 AT4G32730.5 43.396 106 57 2 12 116 85 188 1.19e-21 95.9
Msa0778530 AT4G32730.4 43.396 106 57 2 12 116 85 188 1.19e-21 95.9
Msa0778530 AT4G32730.3 43.396 106 57 2 12 116 85 188 1.19e-21 95.9
Msa0778530 AT4G32730.2 43.396 106 57 2 12 116 85 188 1.19e-21 95.9
Msa0778530 AT4G32730.1 43.396 106 57 2 12 116 85 188 1.42e-21 95.5
Msa0778530 AT2G25230.1 41.176 119 65 3 9 124 21 137 1.77e-21 91.3
Msa0778530 AT2G23290.1 48.077 104 49 4 14 115 13 113 2.12e-21 92.8
Msa0778530 AT1G69560.1 40.541 111 63 2 9 118 102 210 2.42e-21 92.8
Msa0778530 AT1G69560.2 40.541 111 63 2 9 118 118 226 2.97e-21 92.8
Msa0778530 AT5G14750.4 37.255 153 75 5 59 202 2 142 7.03e-21 87.4
Msa0778530 AT5G14750.2 37.255 153 75 5 59 202 2 142 7.03e-21 87.4
Msa0778530 AT3G23250.2 49.438 89 33 1 59 135 2 90 8.45e-21 89.4
Msa0778530 AT5G61420.1 65.574 61 21 0 81 141 2 62 1.90e-20 89.7
Msa0778530 AT1G17950.1 43.396 106 57 2 14 118 5 108 2.66e-20 88.6
Msa0778530 AT1G26780.2 41.667 108 60 2 12 118 96 201 7.99e-20 89.0
Msa0778530 AT1G26780.1 41.667 108 60 2 12 118 96 201 8.57e-20 87.8
Msa0778530 AT1G73410.1 43.396 106 57 2 14 118 6 109 9.94e-19 84.0
Msa0778530 AT1G73410.2 43.396 106 57 2 14 118 6 109 3.62e-18 81.6
Msa0778530 AT3G29020.1 36.792 106 64 2 14 118 65 168 6.78e-18 81.6
Msa0778530 AT3G29020.2 36.792 106 64 2 14 118 67 170 9.10e-18 82.4
Msa0778530 AT4G00540.2 40.179 112 61 3 12 119 101 210 1.26e-17 83.2
Msa0778530 AT5G40430.1 35.714 112 70 1 9 120 49 158 1.86e-17 80.9
Msa0778530 AT4G00540.1 40.179 112 61 3 12 119 99 208 1.89e-17 82.8
Msa0778530 AT4G28110.2 75.610 41 10 0 88 128 4 44 2.64e-17 79.3
Msa0778530 AT5G15310.3 80.488 41 8 0 88 128 9 49 4.32e-17 79.7
Msa0778530 AT5G14340.2 78.571 42 9 0 88 129 10 51 5.16e-17 78.2
Msa0778530 AT1G66380.2 52.381 84 40 0 11 94 7 90 5.23e-17 75.9
Msa0778530 AT4G33450.1 35.897 117 67 3 3 118 13 122 1.03e-16 78.6
Msa0778530 AT5G17800.1 37.143 105 65 1 14 118 93 196 1.39e-16 79.3
Msa0778530 AT5G59780.1 61.224 49 19 0 70 118 1 49 2.95e-15 72.8
Msa0778530 AT3G46130.2 63.462 52 17 1 74 123 5 56 3.00e-15 73.2
Msa0778530 AT2G37630.1 37.864 103 62 1 17 117 7 109 4.65e-15 75.5
Msa0778530 AT2G02820.3 32.317 164 102 4 17 180 33 187 8.98e-14 71.2
Msa0778530 AT3G28910.2 60.377 53 19 1 77 129 1 51 9.83e-14 70.1
Msa0778530 AT1G22640.2 55.738 61 26 1 88 147 16 76 1.73e-13 68.2
Msa0778530 AT2G02820.1 32.353 170 94 5 17 180 33 187 1.90e-13 70.9
Msa0778530 AT5G39700.1 33.036 112 74 1 13 124 55 165 2.20e-13 68.2
Msa0778530 AT2G02820.2 32.317 164 102 4 17 180 33 187 2.39e-13 70.9
Msa0778530 AT4G25560.2 57.447 47 20 0 69 115 1 47 3.45e-13 68.2
Msa0778530 AT1G74650.3 69.767 43 13 0 77 119 1 43 4.08e-13 68.6
Msa0778530 AT1G74430.2 49.153 59 30 0 70 128 1 59 4.56e-13 67.4
Msa0778530 AT1G14350.2 37.624 101 62 1 17 117 28 127 5.47e-13 69.7
Msa0778530 AT1G14350.1 37.624 101 62 1 17 117 28 127 5.47e-13 69.7

Find 66 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAGGAGACCTGCCAATTT+AGG 0.179748 5_2:-59050404 None:intergenic
TTTCTCTTTGATTTCAATTA+TGG 0.194553 5_2:-59052425 None:intergenic
ATTTGATACAATGGAGTTAA+TGG 0.202479 5_2:+59052471 Msa0778530:CDS
TAACTCCATTGTATCAAATA+AGG 0.211281 5_2:-59052467 None:intergenic
GTTGTTGTTTAGGTAGATTT+TGG 0.211426 5_2:-59052315 None:intergenic
TCTTCCTTGTTATTATTATT+AGG 0.250376 5_2:-59052634 None:intergenic
ATCAGAATATGAAGAGAAAA+TGG 0.260581 5_2:+59050964 Msa0778530:CDS
ATGGAGATCTTCAAGGAAAT+TGG 0.293705 5_2:-59052593 None:intergenic
TAAGATTGCTTCTCATTTAC+CGG 0.298461 5_2:+59052171 Msa0778530:CDS
CAACATATGCAGGACTATTA+AGG 0.312359 5_2:+59050876 Msa0778530:intron
ATAACAACAATATGGCCTTT+TGG 0.321530 5_2:+59052662 Msa0778530:CDS
GGTGACTCAAAAGAAGTCTT+TGG 0.330165 5_2:-59052400 None:intergenic
ATCAATTTCATCCTTACTAA+TGG 0.334411 5_2:+59050359 Msa0778530:CDS
TTAGACACTATAATCTCATT+AGG 0.357457 5_2:-59052529 None:intergenic
AAAGGAGACCTGCCAATTTA+GGG 0.368352 5_2:-59050403 None:intergenic
CTGGAGAGCTGTCCCTAAAT+TGG 0.368996 5_2:+59050391 Msa0778530:CDS
TTACTAATGGTCAATGTTGC+TGG 0.374011 5_2:+59050372 Msa0778530:CDS
ATCTCATTAGGTTCTATCAT+TGG 0.375201 5_2:-59052517 None:intergenic
GGTTGGTGTAGTTGTTGTTT+AGG 0.382965 5_2:-59052325 None:intergenic
AAAAGTCCTCTCTTTAAATC+TGG 0.383763 5_2:-59050941 None:intergenic
AGAATGCAATAACAACAATA+TGG 0.412740 5_2:+59052654 Msa0778530:CDS
TGGCCATGGATTCAGAATCT+TGG 0.414339 5_2:+59052797 Msa0778530:CDS
TTCATGCTCAACTTGGGAAC+AGG 0.415682 5_2:+59050996 Msa0778530:CDS
TTGTGAATAGAGAGAGTTAA+GGG 0.416471 5_2:-59050224 None:intergenic
AACTCCATTGTATCAAATAA+GGG 0.417577 5_2:-59052466 None:intergenic
GGCCATGGATTCAGAATCTT+GGG 0.422267 5_2:+59052798 Msa0778530:CDS
TATTAGGCCATTCAAAATCA+AGG 0.431131 5_2:-59052618 None:intergenic
CTGTCTTCCTCTGCAGTCCA+TGG 0.442114 5_2:-59050329 None:intergenic
GCTAGTGGTTTGTGTGTGAT+AGG 0.449945 5_2:-59052268 None:intergenic
ATTGATCTTCATGCTCAACT+TGG 0.457491 5_2:+59050989 Msa0778530:CDS
AACTCTCTCTATTCACAACT+TGG 0.461988 5_2:+59050229 Msa0778530:five_prime_UTR
GATGACAATGATGTTAATAA+TGG 0.462436 5_2:+59052727 Msa0778530:CDS
ATTTCATTATCCGTTCTTCC+CGG 0.474711 5_2:-59052190 None:intergenic
TGTCAATTGTCAAAGGTTGT+TGG 0.484587 5_2:-59052369 None:intergenic
TCTTTGATTTCAATTATGGT+TGG 0.487313 5_2:-59052421 None:intergenic
CATGGACTGCAGAGGAAGAC+AGG 0.488168 5_2:+59050330 Msa0778530:CDS
CAAGGAGATGGAGATCTTCA+AGG 0.489487 5_2:-59052600 None:intergenic
AGCAACATTGACCATTAGTA+AGG 0.496175 5_2:-59050370 None:intergenic
TATACACATAATGATAGCTT+AGG 0.501883 5_2:-59050181 None:intergenic
AATAAAGTCATCATCCCAAA+AGG 0.505829 5_2:-59052677 None:intergenic
CCAACCATTAGAAAAGGAAC+AGG 0.512623 5_2:+59052342 Msa0778530:CDS
ACTACACCAACCATTAGAAA+AGG 0.512895 5_2:+59052336 Msa0778530:CDS
ATTCTTGAGTAGTTGCTAAG+AGG 0.513656 5_2:-59052775 None:intergenic
GATACAATGGAGTTAATGGA+TGG 0.515455 5_2:+59052475 Msa0778530:CDS
GCCATTCAAAATCAAGGAGA+TGG 0.520472 5_2:-59052612 None:intergenic
CAACCTTGTTGTGACAAAGT+AGG 0.529067 5_2:+59050293 Msa0778530:CDS
TTCTCATTTACCGGGAAGAA+CGG 0.532372 5_2:+59052180 Msa0778530:CDS
TGATGAAGAAGTGGATGAAG+AGG 0.532773 5_2:-59052554 None:intergenic
AACACCCTTATTTGATACAA+TGG 0.533111 5_2:+59052462 Msa0778530:CDS
TGCCCAAGATTCTGAATCCA+TGG 0.533477 5_2:-59052800 None:intergenic
GTTGTGAATAGAGAGAGTTA+AGG 0.541062 5_2:-59050225 None:intergenic
CAACTACTCAAGAATGGCCA+TGG 0.542456 5_2:+59052783 Msa0778530:CDS
TTCTCAATGTCAATTGTCAA+AGG 0.545113 5_2:-59052376 None:intergenic
TTGATCTTCATGCTCAACTT+GGG 0.546382 5_2:+59050990 Msa0778530:CDS
AGAGCTGTCCCTAAATTGGC+AGG 0.553725 5_2:+59050395 Msa0778530:CDS
TCTTAGCAACTACTCAAGAA+TGG 0.559850 5_2:+59052777 Msa0778530:CDS
CTTGCATTAGAGAGTGCTAG+TGG 0.562361 5_2:-59052283 None:intergenic
TTGAGGCCAGATTTAAAGAG+AGG 0.565291 5_2:+59050935 Msa0778530:CDS
AAGATTGCTTCTCATTTACC+GGG 0.583628 5_2:+59052172 Msa0778530:CDS
AGAGAGTTAAGGGAGTTGAG+AGG 0.599787 5_2:-59050214 None:intergenic
TGATGAATATGATGAAGAAG+TGG 0.612083 5_2:-59052563 None:intergenic
AATCCTACTTTGTCACAACA+AGG 0.616257 5_2:-59050296 None:intergenic
TTAGATGGACAAATTACTTG+AGG 0.624742 5_2:+59050918 Msa0778530:CDS
TATGCAGGACTATTAAGGTG+TGG 0.656642 5_2:+59050881 Msa0778530:intron
AAAAGGGCCATGGACTGCAG+AGG 0.668866 5_2:+59050322 Msa0778530:CDS
ATGGCCTAATAATAATAACA+AGG 0.688928 5_2:+59052630 Msa0778530:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTAATTAGTAAAATATTA+GGG - chr5_2:59052126-59052145 None:intergenic 10.0%
!! AAAGTAATTAGTAAAATATT+AGG - chr5_2:59052127-59052146 None:intergenic 10.0%
!! ATAATGAAATAAAAAATCAT+TGG + chr5_2:59052203-59052222 Msa0778530:CDS 10.0%
!!! TGTTTTGAAAAAAGAATAAT+GGG + chr5_2:59050266-59050285 Msa0778530:exon 15.0%
!!! TTAATCATTGTTTTAATTTG+TGG + chr5_2:59050516-59050535 Msa0778530:intron 15.0%
!! TCATAGATTACAAATAATTT+CGG + chr5_2:59050539-59050558 Msa0778530:intron 15.0%
!!! TTCAAAAATATTTTGCATTA+TGG + chr5_2:59050693-59050712 Msa0778530:intron 15.0%
!!! CAACTTTAAATTGTTTTTTT+TGG - chr5_2:59051356-59051375 None:intergenic 15.0%
!!! ATATTATGATGAAATCTTTT+AGG + chr5_2:59051578-59051597 Msa0778530:intron 15.0%
!!! GTTATTTTAAACATAAAGAA+AGG - chr5_2:59051610-59051629 None:intergenic 15.0%
!! ATAATTTGAATAAAGTTATG+TGG + chr5_2:59051634-59051653 Msa0778530:intron 15.0%
!! ATTATCTATATAAAAAGGAT+AGG + chr5_2:59051666-59051685 Msa0778530:intron 15.0%
!! TTATCTATATAAAAAGGATA+GGG + chr5_2:59051667-59051686 Msa0778530:intron 15.0%
!! ACAAAAAATAATGTAACTAT+TGG - chr5_2:59052087-59052106 None:intergenic 15.0%
!!! GTGTTTTGAAAAAAGAATAA+TGG + chr5_2:59050265-59050284 Msa0778530:exon 20.0%
!!! ATGAGATTTTTGATGTTTTT+GGG - chr5_2:59050593-59050612 None:intergenic 20.0%
!! TGTATAATTCAATTGCAATT+TGG + chr5_2:59050649-59050668 Msa0778530:intron 20.0%
!!! ATATTTTGCATTATGGTTAA+TGG + chr5_2:59050700-59050719 Msa0778530:intron 20.0%
!!! TATTTTGCATTATGGTTAAT+GGG + chr5_2:59050701-59050720 Msa0778530:intron 20.0%
!! AATTAAACATATGTAGAACT+GGG - chr5_2:59051047-59051066 None:intergenic 20.0%
!! AAATTAAACATATGTAGAAC+TGG - chr5_2:59051048-59051067 None:intergenic 20.0%
!! TGATTAATCATTAGTAAGAA+AGG - chr5_2:59051073-59051092 None:intergenic 20.0%
!! TAAACTATTTACAACTTGAA+GGG - chr5_2:59051218-59051237 None:intergenic 20.0%
!! ATAAACTATTTACAACTTGA+AGG - chr5_2:59051219-59051238 None:intergenic 20.0%
!!! CGTATGAAAATTTTATACTA+TGG + chr5_2:59051286-59051305 Msa0778530:intron 20.0%
!!! TTTTTTCTTTCTTTTGTAGA+TGG + chr5_2:59052146-59052165 Msa0778530:intron 20.0%
!!! TTTCTCTTTGATTTCAATTA+TGG - chr5_2:59052428-59052447 None:intergenic 20.0%
!!! TCTTCCTTGTTATTATTATT+AGG - chr5_2:59052637-59052656 None:intergenic 20.0%
! TATACACATAATGATAGCTT+AGG - chr5_2:59050184-59050203 None:intergenic 25.0%
! ACAAAGTAGGATTGAAAAAA+GGG + chr5_2:59050306-59050325 Msa0778530:CDS 25.0%
! ATCAATTTCATCCTTACTAA+TGG + chr5_2:59050359-59050378 Msa0778530:CDS 25.0%
!! GATGAGATTTTTGATGTTTT+TGG - chr5_2:59050594-59050613 None:intergenic 25.0%
!! ATGGTTAATGGGATTAATTT+TGG + chr5_2:59050712-59050731 Msa0778530:intron 25.0%
! ATCAGAATATGAAGAGAAAA+TGG + chr5_2:59050964-59050983 Msa0778530:CDS 25.0%
! AATTAGAAGTAAAAAGAACG+TGG + chr5_2:59051249-59051268 Msa0778530:intron 25.0%
! TAATTCTTGCATCACTTAAA+AGG - chr5_2:59051546-59051565 None:intergenic 25.0%
! AAAGAAAAAGCTCAAGAAAA+TGG + chr5_2:59052237-59052256 Msa0778530:CDS 25.0%
! AAGAAAAAGCTCAAGAAAAT+GGG + chr5_2:59052238-59052257 Msa0778530:CDS 25.0%
!!! TTGTTGTTTAGGTAGATTTT+GGG - chr5_2:59052317-59052336 None:intergenic 25.0%
!! TCTTTGATTTCAATTATGGT+TGG - chr5_2:59052424-59052443 None:intergenic 25.0%
! AACTCCATTGTATCAAATAA+GGG - chr5_2:59052469-59052488 None:intergenic 25.0%
! TAACTCCATTGTATCAAATA+AGG - chr5_2:59052470-59052489 None:intergenic 25.0%
! ATTTGATACAATGGAGTTAA+TGG + chr5_2:59052471-59052490 Msa0778530:CDS 25.0%
! TTAGACACTATAATCTCATT+AGG - chr5_2:59052532-59052551 None:intergenic 25.0%
! ATGGCCTAATAATAATAACA+AGG + chr5_2:59052630-59052649 Msa0778530:CDS 25.0%
! AGAATGCAATAACAACAATA+TGG + chr5_2:59052654-59052673 Msa0778530:CDS 25.0%
! GATGACAATGATGTTAATAA+TGG + chr5_2:59052727-59052746 Msa0778530:CDS 25.0%
TTGTGAATAGAGAGAGTTAA+GGG - chr5_2:59050227-59050246 None:intergenic 30.0%
GACAAAGTAGGATTGAAAAA+AGG + chr5_2:59050305-59050324 Msa0778530:CDS 30.0%
AAAAAAGCAAGAGCAATGAA+AGG - chr5_2:59050424-59050443 None:intergenic 30.0%
CAAATAATTTCGGTCAAATG+TGG + chr5_2:59050549-59050568 Msa0778530:intron 30.0%
!!! ATTTTTGATGTTTTTGGGAC+CGG - chr5_2:59050588-59050607 None:intergenic 30.0%
AATTGTGATTCAACATATGC+AGG + chr5_2:59050866-59050885 Msa0778530:intron 30.0%
GAAAAAGTTGTAGACTTAGA+TGG + chr5_2:59050903-59050922 Msa0778530:CDS 30.0%
TTAGATGGACAAATTACTTG+AGG + chr5_2:59050918-59050937 Msa0778530:CDS 30.0%
AAAAGTCCTCTCTTTAAATC+TGG - chr5_2:59050944-59050963 None:intergenic 30.0%
! TTTTCATACGTCTCTTTTCA+TGG - chr5_2:59051276-59051295 None:intergenic 30.0%
!! TTTCTTAACTTGCATGACAT+TGG + chr5_2:59051479-59051498 Msa0778530:intron 30.0%
TAACTGCGTTACATTTCAAT+TGG - chr5_2:59051891-59051910 None:intergenic 30.0%
TGAAATGTAACGCAGTTATT+TGG + chr5_2:59051893-59051912 Msa0778530:intron 30.0%
TCAAATAACTCAACTTGAGA+CGG - chr5_2:59051934-59051953 None:intergenic 30.0%
TGAAACAAATGCAATACACT+CGG + chr5_2:59051951-59051970 Msa0778530:intron 30.0%
TAAGATTGCTTCTCATTTAC+CGG + chr5_2:59052171-59052190 Msa0778530:CDS 30.0%
!!! GTTGTTGTTTAGGTAGATTT+TGG - chr5_2:59052318-59052337 None:intergenic 30.0%
! TTTTCCTGTTCCTTTTCTAA+TGG - chr5_2:59052349-59052368 None:intergenic 30.0%
TTCTCAATGTCAATTGTCAA+AGG - chr5_2:59052379-59052398 None:intergenic 30.0%
! AACACCCTTATTTGATACAA+TGG + chr5_2:59052462-59052481 Msa0778530:CDS 30.0%
ATCTCATTAGGTTCTATCAT+TGG - chr5_2:59052520-59052539 None:intergenic 30.0%
TGATGAATATGATGAAGAAG+TGG - chr5_2:59052566-59052585 None:intergenic 30.0%
TATTAGGCCATTCAAAATCA+AGG - chr5_2:59052621-59052640 None:intergenic 30.0%
! ATAACAACAATATGGCCTTT+TGG + chr5_2:59052662-59052681 Msa0778530:CDS 30.0%
! TAACAACAATATGGCCTTTT+GGG + chr5_2:59052663-59052682 Msa0778530:CDS 30.0%
AATAAAGTCATCATCCCAAA+AGG - chr5_2:59052680-59052699 None:intergenic 30.0%
GTTGTGAATAGAGAGAGTTA+AGG - chr5_2:59050228-59050247 None:intergenic 35.0%
AACTCTCTCTATTCACAACT+TGG + chr5_2:59050229-59050248 Msa0778530:five_prime_UTR 35.0%
AATCCTACTTTGTCACAACA+AGG - chr5_2:59050299-59050318 None:intergenic 35.0%
AGCAACATTGACCATTAGTA+AGG - chr5_2:59050373-59050392 None:intergenic 35.0%
TTACTAATGGTCAATGTTGC+TGG + chr5_2:59050372-59050391 Msa0778530:CDS 35.0%
! ATGTGGTTGATACATATAGC+CGG + chr5_2:59050566-59050585 Msa0778530:intron 35.0%
CTCAATCTATCAAGCTAGAT+AGG - chr5_2:59050746-59050765 None:intergenic 35.0%
! ATCTAGCTTGATAGATTGAG+TGG + chr5_2:59050746-59050765 Msa0778530:intron 35.0%
CAACATATGCAGGACTATTA+AGG + chr5_2:59050876-59050895 Msa0778530:intron 35.0%
ATTGATCTTCATGCTCAACT+TGG + chr5_2:59050989-59051008 Msa0778530:CDS 35.0%
TTGATCTTCATGCTCAACTT+GGG + chr5_2:59050990-59051009 Msa0778530:CDS 35.0%
ATATGTAGAACTGGGTGAAA+TGG - chr5_2:59051039-59051058 None:intergenic 35.0%
! GATGGAACTTTTCTTTTCAG+TGG + chr5_2:59051504-59051523 Msa0778530:intron 35.0%
GTTATGCTAGACATTGTAAC+CGG + chr5_2:59051769-59051788 Msa0778530:intron 35.0%
TTATGCTAGACATTGTAACC+GGG + chr5_2:59051770-59051789 Msa0778530:intron 35.0%
ACACAAAAGAGGTTTGACTA+GGG - chr5_2:59051804-59051823 None:intergenic 35.0%
CATTGAAACTCACACAAAAG+AGG - chr5_2:59051815-59051834 None:intergenic 35.0%
AAGATTGCTTCTCATTTACC+GGG + chr5_2:59052172-59052191 Msa0778530:CDS 35.0%
ATTTCATTATCCGTTCTTCC+CGG - chr5_2:59052193-59052212 None:intergenic 35.0%
ACTACACCAACCATTAGAAA+AGG + chr5_2:59052336-59052355 Msa0778530:CDS 35.0%
TGTCAATTGTCAAAGGTTGT+TGG - chr5_2:59052372-59052391 None:intergenic 35.0%
GATACAATGGAGTTAATGGA+TGG + chr5_2:59052475-59052494 Msa0778530:CDS 35.0%
ATGGAGATCTTCAAGGAAAT+TGG - chr5_2:59052596-59052615 None:intergenic 35.0%
! TCCATCTCCTTGATTTTGAA+TGG + chr5_2:59052611-59052630 Msa0778530:CDS 35.0%
ATTCTTGAGTAGTTGCTAAG+AGG - chr5_2:59052778-59052797 None:intergenic 35.0%
TCTTAGCAACTACTCAAGAA+TGG + chr5_2:59052777-59052796 Msa0778530:CDS 35.0%
! CAACCTTGTTGTGACAAAGT+AGG + chr5_2:59050293-59050312 Msa0778530:CDS 40.0%
TAGGATTGAAAAAAGGGCCA+TGG + chr5_2:59050312-59050331 Msa0778530:CDS 40.0%
AAAGGAGACCTGCCAATTTA+GGG - chr5_2:59050406-59050425 None:intergenic 40.0%
TATGCAGGACTATTAAGGTG+TGG + chr5_2:59050881-59050900 Msa0778530:intron 40.0%
TTGAGGCCAGATTTAAAGAG+AGG + chr5_2:59050935-59050954 Msa0778530:CDS 40.0%
CACACGACAAATTTGTCTTG+TGG + chr5_2:59051445-59051464 Msa0778530:intron 40.0%
ACTTGCATGACATTGGAAGA+TGG + chr5_2:59051486-59051505 Msa0778530:intron 40.0%
AGTGATGCAAGAATTACGCA+TGG + chr5_2:59051550-59051569 Msa0778530:intron 40.0%
GTGATGCAAGAATTACGCAT+GGG + chr5_2:59051551-59051570 Msa0778530:intron 40.0%
CACACAAAAGAGGTTTGACT+AGG - chr5_2:59051805-59051824 None:intergenic 40.0%
TTCTCATTTACCGGGAAGAA+CGG + chr5_2:59052180-59052199 Msa0778530:CDS 40.0%
!! GGTTGGTGTAGTTGTTGTTT+AGG - chr5_2:59052328-59052347 None:intergenic 40.0%
! CCTGTTCCTTTTCTAATGGT+TGG - chr5_2:59052345-59052364 None:intergenic 40.0%
CCAACCATTAGAAAAGGAAC+AGG + chr5_2:59052342-59052361 Msa0778530:CDS 40.0%
GGTGACTCAAAAGAAGTCTT+TGG - chr5_2:59052403-59052422 None:intergenic 40.0%
TGATGAAGAAGTGGATGAAG+AGG - chr5_2:59052557-59052576 None:intergenic 40.0%
GCCATTCAAAATCAAGGAGA+TGG - chr5_2:59052615-59052634 None:intergenic 40.0%
AGAGAGTTAAGGGAGTTGAG+AGG - chr5_2:59050217-59050236 None:intergenic 45.0%
GAAAGGAGACCTGCCAATTT+AGG - chr5_2:59050407-59050426 None:intergenic 45.0%
TTCATGCTCAACTTGGGAAC+AGG + chr5_2:59050996-59051015 Msa0778530:CDS 45.0%
GTAGAACTGGGTGAAATGGT+TGG - chr5_2:59051035-59051054 None:intergenic 45.0%
TTGACTAGGGTTCAAACACC+CGG - chr5_2:59051791-59051810 None:intergenic 45.0%
ACTCGGATGTCTTAGAGCTT+TGG + chr5_2:59051968-59051987 Msa0778530:intron 45.0%
! GCTAGTGGTTTGTGTGTGAT+AGG - chr5_2:59052271-59052290 None:intergenic 45.0%
!! CTTGCATTAGAGAGTGCTAG+TGG - chr5_2:59052286-59052305 None:intergenic 45.0%
CAAGGAGATGGAGATCTTCA+AGG - chr5_2:59052603-59052622 None:intergenic 45.0%
CAACTACTCAAGAATGGCCA+TGG + chr5_2:59052783-59052802 Msa0778530:CDS 45.0%
TGGCCATGGATTCAGAATCT+TGG + chr5_2:59052797-59052816 Msa0778530:CDS 45.0%
GGCCATGGATTCAGAATCTT+GGG + chr5_2:59052798-59052817 Msa0778530:CDS 45.0%
TGCCCAAGATTCTGAATCCA+TGG - chr5_2:59052803-59052822 None:intergenic 45.0%
!! ATTATATTATCTATATAAAA+AGG + chr5_2:59051661-59051680 Msa0778530:intron 5.0%
CTGGAGAGCTGTCCCTAAAT+TGG + chr5_2:59050391-59050410 Msa0778530:CDS 50.0%
AGAGCTGTCCCTAAATTGGC+AGG + chr5_2:59050395-59050414 Msa0778530:CDS 50.0%
!! TGGGTGAAATGGTTGGTGAG+GGG - chr5_2:59051028-59051047 None:intergenic 50.0%
!! CTGGGTGAAATGGTTGGTGA+GGG - chr5_2:59051029-59051048 None:intergenic 50.0%
! ACTGGGTGAAATGGTTGGTG+AGG - chr5_2:59051030-59051049 None:intergenic 50.0%
! AAAAGGGCCATGGACTGCAG+AGG + chr5_2:59050322-59050341 Msa0778530:CDS 55.0%
CTGTCTTCCTCTGCAGTCCA+TGG - chr5_2:59050332-59050351 None:intergenic 55.0%
! CATGGACTGCAGAGGAAGAC+AGG + chr5_2:59050330-59050349 Msa0778530:CDS 55.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 59050179 59052837 59050179 ID=Msa0778530;Name=Msa0778530
chr5_2 mRNA 59050179 59052837 59050179 ID=Msa0778530-mRNA-1;Parent=Msa0778530;Name=Msa0778530-mRNA-1;_AED=0.12;_eAED=0.12;_QI=105|1|0.66|1|1|1|3|0|311
chr5_2 exon 59050179 59050416 59050179 ID=Msa0778530-mRNA-1:exon:17391;Parent=Msa0778530-mRNA-1
chr5_2 exon 59050888 59051017 59050888 ID=Msa0778530-mRNA-1:exon:17392;Parent=Msa0778530-mRNA-1
chr5_2 exon 59052165 59052837 59052165 ID=Msa0778530-mRNA-1:exon:17393;Parent=Msa0778530-mRNA-1
chr5_2 five_prime_UTR 59050179 59050283 59050179 ID=Msa0778530-mRNA-1:five_prime_utr;Parent=Msa0778530-mRNA-1
chr5_2 CDS 59050284 59050416 59050284 ID=Msa0778530-mRNA-1:cds;Parent=Msa0778530-mRNA-1
chr5_2 CDS 59050888 59051017 59050888 ID=Msa0778530-mRNA-1:cds;Parent=Msa0778530-mRNA-1
chr5_2 CDS 59052165 59052837 59052165 ID=Msa0778530-mRNA-1:cds;Parent=Msa0778530-mRNA-1
Gene Sequence

>Msa0778530

ATGGGAAGACAACCTTGTTGTGACAAAGTAGGATTGAAAAAAGGGCCATGGACTGCAGAGGAAGACAGGAAGCTCATCAATTTCATCCTTACTAATGGTCAATGTTGCTGGAGAGCTGTCCCTAAATTGGCAGGACTATTAAGGTGTGGAAAAAGTTGTAGACTTAGATGGACAAATTACTTGAGGCCAGATTTAAAGAGAGGACTTTTATCAGAATATGAAGAGAAAATGGTGATTGATCTTCATGCTCAACTTGGGAACAGATGGTCTAAGATTGCTTCTCATTTACCGGGAAGAACGGATAATGAAATAAAAAATCATTGGAATACTCACATAAAGAAAAAGCTCAAGAAAATGGGAATTGATCCTATCACACACAAACCACTAGCACTCTCTAATGCAAGTGATCAAACCCAAAATCTACCTAAACAACAACTACACCAACCATTAGAAAAGGAACAGGAAAACCAACAACCTTTGACAATTGACATTGAGAAGCCAAAGACTTCTTTTGAGTCACCAACCATAATTGAAATCAAAGAGAAAGATGAAATTACAATAACACCCTTATTTGATACAATGGAGTTAATGGATGGATTTTGTATAGATGAAGTTCCAATGATAGAACCTAATGAGATTATAGTGTCTAATTCCTCTTCATCCACTTCTTCATCATATTCATCAAATTCAACCAATTTCCTTGAAGATCTCCATCTCCTTGATTTTGAATGGCCTAATAATAATAACAAGGAAGAATGCAATAACAACAATATGGCCTTTTGGGATGATGACTTTATTAGTAGCTTGAATTTGTTGCTTAATGATGATGACAATGATGTTAATAATGGTGAAACAAAGCAAGAACTTGATGCTCCTCTTAGCAACTACTCAAGAATGGCCATGGATTCAGAATCTTGGGCATATGAATTGTTTTGA
Protein sequence

>Msa0778530

MGRQPCCDKVGLKKGPWTAEEDRKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPITHKPLALSNASDQTQNLPKQQLHQPLEKEQENQQPLTIDIEKPKTSFESPTIIEIKEKDEITITPLFDTMELMDGFCIDEVPMIEPNEIIVSNSSSSTSSSYSSNSTNFLEDLHLLDFEWPNNNNKEECNNNNMAFWDDDFISSLNLLLNDDDNDVNNGETKQELDAPLSNYSRMAMDSESWAYELF*