AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0778950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0778950 MtrunA17_Chr5g0434931 84.270 178 28 0 9 186 85 262 3.11e-98 285
Msa0778950 MtrunA17_Chr7g0228991 84.024 169 24 1 9 177 79 244 1.41e-93 273
Msa0778950 MtrunA17_Chr7g0220341 66.864 169 54 2 10 177 78 245 3.04e-73 222
Msa0778950 MtrunA17_Chr5g0434911 63.068 176 56 5 9 183 71 238 4.08e-64 198
Msa0778950 MtrunA17_Chr8g0360111 55.367 177 63 2 9 184 75 236 9.44e-54 172
Msa0778950 MtrunA17_Chr5g0434891 62.406 133 44 2 24 155 1 128 1.79e-52 164
Msa0778950 MtrunA17_Chr7g0229101 54.971 171 61 5 9 177 22 178 7.28e-49 157
Msa0778950 MtrunA17_Chr5g0434841 44.495 218 75 7 9 184 70 283 2.64e-48 159
Msa0778950 MtrunA17_Chr5g0434901 79.787 94 19 0 9 102 23 116 1.25e-44 144
Msa0778950 MtrunA17_Chr5g0434831 56.923 130 47 4 9 132 57 183 1.12e-41 139
Msa0778950 MtrunA17_Chr7g0229131 52.703 148 52 5 9 154 22 153 2.23e-40 134
Msa0778950 MtrunA17_Chr5g0434871 84.286 70 10 1 21 89 2 71 5.25e-29 102
Msa0778950 MtrunA17_Chr7g0240821 58.621 87 33 2 10 96 52 135 8.72e-29 106
Msa0778950 MtrunA17_Chr3g0121241 57.576 66 28 0 10 75 93 158 4.91e-23 93.2
Msa0778950 MtrunA17_Chr4g0044421 58.333 60 25 0 10 69 63 122 3.15e-22 89.0
Msa0778950 MtrunA17_Chr4g0037141 42.453 106 51 2 10 115 63 158 4.14e-22 90.5
Msa0778950 MtrunA17_Chr5g0435101 55.385 65 29 0 10 74 62 126 5.11e-22 88.6
Msa0778950 MtrunA17_Chr4g0070641 51.807 83 35 2 10 89 63 143 8.65e-22 87.0
Msa0778950 MtrunA17_Chr4g0070611 51.807 83 35 2 10 89 63 143 1.45e-21 89.4
Msa0778950 MtrunA17_Chr4g0055981 53.846 78 32 2 10 85 106 181 2.18e-21 87.4
Msa0778950 MtrunA17_Chr3g0131121 48.101 79 40 1 10 87 63 141 5.82e-21 87.8
Msa0778950 MtrunA17_Chr7g0274581 64.815 54 19 0 10 63 63 116 7.02e-21 85.5
Msa0778950 MtrunA17_Chr4g0022931 51.282 78 35 1 10 84 64 141 4.66e-20 84.7
Msa0778950 MtrunA17_Chr8g0346561 64.815 54 19 0 10 63 63 116 7.57e-20 84.7
Msa0778950 MtrunA17_Chr8g0343831 66.667 54 18 0 10 63 59 112 2.43e-19 82.4
Msa0778950 MtrunA17_Chr4g0022901 48.750 80 39 1 10 87 64 143 3.21e-19 82.4
Msa0778950 MtrunA17_Chr1g0187761 54.286 70 29 1 10 76 63 132 6.56e-19 81.6
Msa0778950 MtrunA17_Chr7g0275911 61.111 54 21 0 10 63 63 116 1.00e-18 80.9
Msa0778950 MtrunA17_Chr7g0261281 61.111 54 21 0 10 63 63 116 1.58e-18 80.9
Msa0778950 MtrunA17_Chr4g0022911 46.753 77 38 1 10 86 64 137 2.19e-18 80.5
Msa0778950 MtrunA17_Chr8g0385321 42.857 70 40 0 10 79 63 132 2.31e-18 80.9
Msa0778950 MtrunA17_Chr5g0400821 47.887 71 37 0 10 80 64 134 2.50e-18 80.5
Msa0778950 MtrunA17_Chr5g0434861 52.632 76 36 0 102 177 13 88 2.62e-18 76.6
Msa0778950 MtrunA17_Chr7g0247131 42.466 73 42 0 10 82 29 101 6.67e-18 79.0
Msa0778950 MtrunA17_Chr2g0323411 47.761 67 35 0 10 76 63 129 1.03e-17 79.3
Msa0778950 MtrunA17_Chr3g0115821 44.286 70 39 0 10 79 63 132 1.13e-17 79.3
Msa0778950 MtrunA17_Chr2g0281071 46.269 67 36 0 10 76 64 130 1.31e-17 79.0
Msa0778950 MtrunA17_Chr1g0167661 54.545 55 25 0 11 65 64 118 1.55e-17 77.8
Msa0778950 MtrunA17_Chr5g0410961 47.761 67 35 0 10 76 63 129 2.25e-17 78.6
Msa0778950 MtrunA17_Chr1g0167691 54.545 55 25 0 10 64 63 117 2.54e-17 77.0
Msa0778950 MtrunA17_Chr4g0048511 46.269 67 36 0 10 76 64 130 2.55e-17 78.2
Msa0778950 MtrunA17_Chr6g0452271 50.000 66 33 0 10 75 63 128 2.84e-17 78.2
Msa0778950 MtrunA17_Chr5g0395281 43.284 67 38 0 10 76 63 129 3.04e-17 77.8
Msa0778950 MtrunA17_Chr1g0203411 56.452 62 26 1 10 71 63 123 3.36e-17 77.4
Msa0778950 MtrunA17_Chr4g0042671 50.000 68 34 0 10 77 63 130 3.45e-17 78.2
Msa0778950 MtrunA17_Chr4g0058631 45.455 66 36 0 10 75 63 128 3.54e-17 77.8
Msa0778950 MtrunA17_Chr4g0039971 46.269 67 36 0 10 76 64 130 5.15e-17 77.4
Msa0778950 MtrunA17_Chr2g0323351 54.545 55 25 0 10 64 63 117 9.89e-17 75.5
Msa0778950 MtrunA17_Chr1g0152011 40.260 77 46 0 10 86 64 140 1.15e-16 76.3
Msa0778950 MtrunA17_Chr4g0022881 44.578 83 39 2 10 85 63 145 1.28e-16 74.7
Msa0778950 MtrunA17_Chr7g0217221 59.259 54 22 0 10 63 63 116 1.50e-16 75.5
Msa0778950 MtrunA17_Chr3g0117091 45.455 66 36 0 10 75 63 128 1.70e-16 75.9
Msa0778950 MtrunA17_Chr1g0211161 37.500 104 45 3 10 96 64 164 2.02e-16 74.3
Msa0778950 MtrunA17_Chr7g0217741 49.254 67 34 0 10 76 63 129 2.10e-16 75.5
Msa0778950 MtrunA17_Chr3g0103281 45.833 72 39 0 10 81 63 134 2.57e-16 75.1
Msa0778950 MtrunA17_Chr8g0349261 43.939 66 37 0 10 75 65 130 2.64e-16 75.1
Msa0778950 MtrunA17_Chr3g0135311 43.056 72 41 0 10 81 64 135 3.29e-16 75.1
Msa0778950 MtrunA17_Chr7g0270891 45.455 66 36 0 10 75 63 128 3.67e-16 75.1
Msa0778950 MtrunA17_Chr3g0092401 59.259 54 22 0 10 63 64 117 4.06e-16 74.7
Msa0778950 MtrunA17_Chr4g0022891 41.026 78 42 1 10 83 63 140 4.12e-16 73.6
Msa0778950 MtrunA17_Chr5g0434571 35.772 123 76 1 10 132 99 218 8.94e-16 73.9
Msa0778950 MtrunA17_Chr8g0342521 49.153 59 30 0 10 68 63 121 1.55e-15 73.2
Msa0778950 MtrunA17_Chr1g0193801 43.939 66 37 0 10 75 63 128 1.69e-15 73.6
Msa0778950 MtrunA17_Chr1g0203441 47.692 65 33 1 10 74 64 127 1.90e-15 72.4
Msa0778950 MtrunA17_Chr1g0193371 43.939 66 37 0 10 75 63 128 1.92e-15 73.2
Msa0778950 MtrunA17_Chr2g0309911 46.667 60 32 0 10 69 62 121 2.04e-15 72.8
Msa0778950 MtrunA17_Chr8g0342481 51.786 56 27 0 10 65 64 119 2.07e-15 73.2
Msa0778950 MtrunA17_Chr1g0151941 50.000 62 31 0 10 71 64 125 2.33e-15 71.6
Msa0778950 MtrunA17_Chr8g0342541 49.153 59 30 0 10 68 63 121 3.23e-15 72.4
Msa0778950 MtrunA17_Chr6g0453471 47.761 67 35 0 10 76 63 129 3.28e-15 72.4
Msa0778950 MtrunA17_Chr6g0470971 52.727 55 26 0 10 64 65 119 3.43e-15 71.6
Msa0778950 MtrunA17_Chr4g0032401 49.153 59 30 0 10 68 68 126 3.86e-15 72.0
Msa0778950 MtrunA17_Chr4g0060721 55.556 54 24 0 10 63 64 117 4.10e-15 72.0
Msa0778950 MtrunA17_Chr4g0057031 45.455 66 36 0 10 75 63 128 5.17e-15 71.2
Msa0778950 MtrunA17_Chr2g0328771 50.000 54 27 0 10 63 71 124 5.21e-15 71.6
Msa0778950 MtrunA17_Chr4g0068061 50.909 55 27 0 11 65 64 118 6.84e-15 71.2
Msa0778950 MtrunA17_Chr1g0194951 31.250 160 77 5 11 144 64 216 7.18e-15 71.6
Msa0778950 MtrunA17_Chr2g0322831 55.769 52 22 1 4 55 22 72 7.22e-15 66.6
Msa0778950 MtrunA17_Chr7g0228891 47.059 68 36 0 10 77 63 130 1.34e-14 70.1
Msa0778950 MtrunA17_Chr7g0254411 55.556 54 24 0 10 63 63 116 1.42e-14 70.5
Msa0778950 MtrunA17_Chr4g0028311 51.786 56 27 0 10 65 64 119 1.68e-14 70.1
Msa0778950 MtrunA17_Chr2g0330041 47.458 59 31 0 10 68 63 121 1.90e-14 70.5
Msa0778950 MtrunA17_Chr7g0264641 53.571 56 26 0 10 65 64 119 3.33e-14 68.9
Msa0778950 MtrunA17_Chr3g0088461 50.000 54 27 0 10 63 73 126 3.63e-14 69.3
Msa0778950 MtrunA17_Chr5g0417821 43.284 67 38 0 10 76 58 124 5.14e-14 68.6
Msa0778950 MtrunA17_Chr8g0387421 50.000 54 27 0 10 63 63 116 6.46e-14 68.6
Msa0778950 MtrunA17_Chr3g0110351 53.704 54 25 0 10 63 63 116 1.06e-13 67.8
Msa0778950 MtrunA17_Chr4g0054391 39.362 94 51 1 10 97 64 157 1.31e-13 67.4
Msa0778950 MtrunA17_Chr3g0093811 42.667 75 42 1 1 75 25 98 1.57e-13 67.0
Msa0778950 MtrunA17_Chr4g0030881 48.485 66 31 1 10 75 65 127 1.92e-13 66.6
Msa0778950 MtrunA17_Chr6g0453211 57.143 49 21 0 10 58 63 111 2.10e-13 67.0
Msa0778950 MtrunA17_Chr3g0080861 49.057 53 27 0 10 62 88 140 3.92e-13 66.6
Msa0778950 MtrunA17_Chr7g0271241 46.970 66 35 0 10 75 63 128 7.09e-13 65.9
Msa0778950 MtrunA17_Chr4g0072751 56.250 48 21 0 10 57 64 111 8.04e-13 65.5
Msa0778950 MtrunA17_Chr1g0180391 50.000 54 27 0 10 63 70 123 9.08e-13 64.3
Msa0778950 MtrunA17_Chr2g0327821 32.456 114 72 1 10 123 57 165 1.18e-12 64.3
Msa0778950 MtrunA17_Chr8g0354661 45.283 53 29 0 10 62 88 140 1.69e-12 65.1
Msa0778950 MtrunA17_Chr1g0186061 50.943 53 26 0 10 62 71 123 1.76e-12 63.9
Msa0778950 MtrunA17_Chr2g0327351 54.167 48 22 0 10 57 64 111 2.12e-12 64.3
Msa0778950 MtrunA17_Chr3g0117511 29.070 172 110 5 10 176 231 395 3.16e-12 63.9
Msa0778950 MtrunA17_Chr3g0099131 43.396 53 30 0 10 62 92 144 3.87e-12 63.9
Msa0778950 MtrunA17_Chr1g0168661 52.830 53 25 0 10 62 72 124 4.06e-12 62.8
Msa0778950 MtrunA17_Chr2g0311221 51.020 49 24 0 10 58 65 113 4.84e-12 63.2
Msa0778950 MtrunA17_Chr6g0487491 46.875 64 26 1 10 65 64 127 1.18e-11 61.6
Msa0778950 MtrunA17_Chr1g0209661 40.278 72 43 0 10 81 78 149 1.76e-11 61.6
Msa0778950 MtrunA17_Chr1g0194301 38.028 71 44 0 10 80 84 154 1.86e-11 61.2
Msa0778950 MtrunA17_Chr7g0228231 46.296 54 29 0 10 63 65 118 3.16e-11 59.7
Msa0778950 MtrunA17_Chr7g0269831 47.273 55 29 0 11 65 64 118 3.37e-11 60.8
Msa0778950 MtrunA17_Chr5g0397231 47.917 48 25 0 10 57 63 110 4.15e-11 60.5
Msa0778950 MtrunA17_Chr1g0194291 34.000 100 58 2 10 103 72 169 4.33e-11 60.1
Msa0778950 MtrunA17_Chr5g0417621 42.593 54 31 0 10 63 182 235 4.44e-11 60.8
Msa0778950 MtrunA17_Chr7g0228401 49.020 51 26 0 10 60 327 377 5.83e-11 60.5
Msa0778950 MtrunA17_Chr4g0058991 33.721 86 54 1 10 92 257 342 5.93e-11 60.5
Msa0778950 MtrunA17_Chr4g0042501 40.741 54 32 0 10 63 153 206 6.21e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0778950 AT1G66370.1 50.909 110 44 2 10 113 59 164 2.03e-29 109
Msa0778950 AT5G14750.4 45.455 110 57 1 9 118 5 111 1.09e-24 94.0
Msa0778950 AT5G14750.2 45.455 110 57 1 9 118 5 111 1.09e-24 94.0
Msa0778950 AT3G13540.1 50.000 86 40 1 10 95 74 156 1.96e-24 96.3
Msa0778950 AT5G14750.3 48.485 99 48 1 9 107 32 127 2.94e-24 94.0
Msa0778950 AT5G14750.1 45.455 110 57 1 9 118 66 172 6.54e-24 94.0
Msa0778950 AT4G38620.1 47.436 78 41 0 10 87 63 140 1.85e-22 91.7
Msa0778950 AT3G27920.1 67.857 56 18 0 9 64 64 119 1.41e-21 88.2
Msa0778950 AT5G52600.1 70.175 57 17 0 10 66 63 119 2.70e-21 87.0
Msa0778950 AT1G22640.3 55.000 60 27 0 10 69 6 65 3.67e-21 86.7
Msa0778950 AT5G40330.1 67.273 55 18 0 9 63 62 116 5.78e-21 86.7
Msa0778950 AT2G16720.1 55.000 60 27 0 10 69 63 122 1.33e-20 86.7
Msa0778950 AT1G22640.1 55.000 60 27 0 10 69 63 122 1.36e-20 86.3
Msa0778950 AT4G09460.1 53.333 60 28 0 10 69 63 122 4.64e-20 84.3
Msa0778950 AT1G56650.1 49.091 110 47 3 10 114 59 164 2.28e-19 82.8
Msa0778950 AT3G23250.2 59.259 54 22 0 10 63 6 59 3.05e-19 82.0
Msa0778950 AT4G34990.1 48.485 66 34 0 10 75 63 128 3.28e-19 82.8
Msa0778950 AT1G35515.1 40.964 83 41 1 10 92 63 137 7.42e-19 80.9
Msa0778950 AT1G66380.3 81.132 53 10 0 10 62 26 78 1.09e-18 77.4
Msa0778950 AT3G61250.1 41.860 86 47 1 10 95 63 145 1.38e-18 81.6
Msa0778950 AT5G16770.4 50.746 67 33 0 10 76 63 129 1.88e-18 81.6
Msa0778950 AT5G16770.3 50.746 67 33 0 10 76 63 129 1.88e-18 81.6
Msa0778950 AT3G23250.1 59.259 54 22 0 10 63 63 116 1.91e-18 80.9
Msa0778950 AT5G16770.1 50.746 67 33 0 10 76 63 129 2.06e-18 81.6
Msa0778950 AT5G16770.2 50.746 67 33 0 10 76 63 129 2.06e-18 81.6
Msa0778950 AT1G66390.1 51.852 108 44 2 10 109 59 166 2.24e-18 80.1
Msa0778950 AT1G66380.1 81.132 53 10 0 10 62 59 111 2.39e-18 77.8
Msa0778950 AT1G71030.2 58.182 55 23 0 10 64 17 71 3.51e-18 78.2
Msa0778950 AT1G71030.1 58.182 55 23 0 10 64 31 85 4.63e-18 78.2
Msa0778950 AT1G06180.1 51.389 72 35 0 10 81 63 134 6.03e-18 79.0
Msa0778950 AT5G65230.1 46.269 67 36 0 10 76 63 129 1.11e-17 79.3
Msa0778950 AT4G17785.1 47.761 67 35 0 10 76 64 130 1.26e-17 79.7
Msa0778950 AT4G05100.1 46.269 67 36 0 10 76 64 130 1.26e-17 79.3
Msa0778950 AT4G17785.2 47.761 67 35 0 10 76 64 130 1.28e-17 79.3
Msa0778950 AT5G35550.2 59.259 54 22 0 10 63 68 121 1.38e-17 78.2
Msa0778950 AT3G02940.2 47.761 67 35 0 10 76 63 129 1.40e-17 79.0
Msa0778950 AT5G62320.1 40.230 87 49 1 10 93 71 157 1.47e-17 77.8
Msa0778950 AT3G02940.1 47.761 67 35 0 10 76 63 129 1.52e-17 79.0
Msa0778950 AT3G02940.3 47.761 67 35 0 10 76 63 129 1.52e-17 79.0
Msa0778950 AT4G21440.1 47.761 67 35 0 10 76 63 129 1.60e-17 79.3
Msa0778950 AT5G10280.1 47.761 67 35 0 10 76 63 129 1.73e-17 79.0
Msa0778950 AT5G35550.1 59.259 54 22 0 10 63 65 118 1.75e-17 78.2
Msa0778950 AT4G28110.1 46.269 67 36 0 10 76 63 129 2.22e-17 78.2
Msa0778950 AT1G16490.1 51.724 58 28 0 10 67 65 122 4.29e-17 77.0
Msa0778950 AT5G26660.2 36.697 109 69 0 10 118 32 140 4.36e-17 77.8
Msa0778950 AT3G49690.1 50.000 64 32 0 10 73 64 127 5.73e-17 77.4
Msa0778950 AT1G57560.1 31.250 144 90 3 10 147 63 203 6.38e-17 77.4
Msa0778950 AT5G56110.1 48.611 72 37 0 10 81 63 134 6.73e-17 77.4
Msa0778950 AT5G26660.1 36.697 109 69 0 10 118 63 171 7.14e-17 77.4
Msa0778950 AT5G65790.1 50.000 64 32 0 10 73 64 127 8.59e-17 77.4
Msa0778950 AT5G54230.1 46.269 67 36 0 10 76 63 129 1.58e-16 76.3
Msa0778950 AT1G57560.2 45.455 66 36 0 10 75 63 128 1.70e-16 75.5
Msa0778950 AT5G15310.1 50.746 67 33 0 10 76 63 129 2.12e-16 75.9
Msa0778950 AT5G49330.1 54.386 57 26 0 11 67 64 120 2.22e-16 75.9
Msa0778950 AT5G15310.2 50.746 67 33 0 10 76 63 129 2.28e-16 75.9
Msa0778950 AT5G15310.4 50.746 67 33 0 10 76 63 129 2.54e-16 74.7
Msa0778950 AT4G12350.1 46.970 66 35 0 10 75 63 128 2.80e-16 75.1
Msa0778950 AT3G47600.2 61.111 54 21 0 10 63 57 110 3.07e-16 75.5
Msa0778950 AT3G47600.1 61.111 54 21 0 10 63 63 116 3.40e-16 75.5
Msa0778950 AT1G09540.1 45.455 66 36 0 10 75 63 128 3.76e-16 75.5
Msa0778950 AT5G57620.1 56.140 57 25 0 10 66 64 120 3.76e-16 75.1
Msa0778950 AT1G74650.1 58.182 55 23 0 10 64 63 117 5.01e-16 75.1
Msa0778950 AT4G01680.3 50.000 60 30 0 10 69 63 122 5.44e-16 73.6
Msa0778950 AT1G34670.1 43.056 72 41 0 10 81 63 134 5.76e-16 75.1
Msa0778950 AT3G28910.1 59.259 54 22 0 10 63 63 116 6.61e-16 74.3
Msa0778950 AT5G12870.1 51.852 54 26 0 10 63 69 122 7.53e-16 73.9
Msa0778950 AT2G31180.1 57.407 54 23 0 10 63 63 116 7.78e-16 73.6
Msa0778950 AT4G01680.1 50.000 60 30 0 10 69 63 122 7.84e-16 74.3
Msa0778950 AT3G01140.2 41.111 90 52 1 10 98 63 152 9.25e-16 74.3
Msa0778950 AT4G01680.2 50.000 60 30 0 10 69 75 134 9.69e-16 74.3
Msa0778950 AT1G18570.1 50.000 60 30 0 10 69 64 123 9.91e-16 74.3
Msa0778950 AT3G01140.1 41.111 90 52 1 10 98 106 195 1.12e-15 74.3
Msa0778950 AT3G30210.1 31.214 173 101 5 10 177 78 237 1.70e-15 72.8
Msa0778950 AT5G23000.1 56.364 55 24 0 10 64 64 118 2.36e-15 73.2
Msa0778950 AT3G12820.2 49.123 57 29 0 10 66 17 73 4.67e-15 70.1
Msa0778950 AT3G08500.1 53.704 54 25 0 10 63 81 134 5.19e-15 72.0
Msa0778950 AT5G62470.1 57.407 54 23 0 10 63 62 115 5.36e-15 72.0
Msa0778950 AT5G62470.2 57.407 54 23 0 10 63 63 116 5.44e-15 72.0
Msa0778950 AT4G22680.1 43.939 66 37 0 10 75 63 128 7.04e-15 70.9
Msa0778950 AT5G60890.1 43.939 66 37 0 10 75 63 128 7.36e-15 71.2
Msa0778950 AT4G25560.1 48.438 64 32 1 10 72 61 124 1.11e-14 70.9
Msa0778950 AT3G12820.1 49.123 57 29 0 10 66 65 121 1.13e-14 70.1
Msa0778950 AT5G07700.1 45.455 66 36 0 10 75 63 128 1.26e-14 70.9
Msa0778950 AT5G07700.2 45.455 66 36 0 10 75 63 128 1.26e-14 70.9
Msa0778950 AT3G53200.2 53.704 54 25 0 9 62 26 79 1.28e-14 69.3
Msa0778950 AT1G79180.1 49.091 55 28 0 10 64 65 119 1.74e-14 70.5
Msa0778950 AT3G12720.1 45.000 60 33 0 10 69 73 132 1.97e-14 70.1
Msa0778950 AT1G08810.1 50.000 62 31 0 10 71 63 124 2.01e-14 70.1
Msa0778950 AT5G07690.1 43.939 66 37 0 10 75 63 128 2.21e-14 70.5
Msa0778950 AT3G13890.2 50.000 56 28 0 10 65 63 118 2.47e-14 70.5
Msa0778950 AT4G37780.1 49.123 57 29 0 10 66 64 120 2.49e-14 70.1
Msa0778950 AT3G53200.1 53.704 54 25 0 9 62 59 112 2.55e-14 68.9
Msa0778950 AT1G79180.2 49.091 55 28 0 10 64 98 152 2.61e-14 70.1
Msa0778950 AT1G74080.1 45.000 60 33 0 10 69 63 122 2.62e-14 70.1
Msa0778950 AT3G13890.1 50.000 56 28 0 10 65 72 127 2.64e-14 70.5
Msa0778950 AT1G69560.1 35.227 88 55 1 10 97 155 240 3.04e-14 70.1
Msa0778950 AT5G61420.2 43.939 66 37 0 10 75 63 128 3.39e-14 70.1
Msa0778950 AT1G69560.2 35.227 88 55 1 10 97 171 256 3.47e-14 69.7
Msa0778950 AT1G56160.1 49.091 55 28 0 10 64 65 119 7.00e-14 68.6
Msa0778950 AT2G47460.1 50.943 53 26 0 11 63 64 116 8.75e-14 68.9
Msa0778950 AT3G62610.1 28.902 173 85 6 11 163 64 218 1.00e-13 68.6
Msa0778950 AT5G55020.1 50.000 54 27 0 10 63 77 130 1.06e-13 68.9
Msa0778950 AT1G66230.1 45.455 66 36 0 10 75 63 128 1.39e-13 67.8
Msa0778950 AT3G48920.1 43.750 64 36 0 10 73 69 132 1.52e-13 67.4
Msa0778950 AT5G52260.1 56.604 53 23 0 10 62 63 115 2.02e-13 67.0
Msa0778950 AT5G16600.1 43.056 72 41 0 10 81 63 134 2.78e-13 67.0
Msa0778950 AT2G47190.1 43.662 71 40 0 10 80 71 141 2.94e-13 66.6
Msa0778950 AT5G59780.2 54.717 53 24 0 10 62 38 90 2.96e-13 65.9
Msa0778950 AT5G06100.1 45.283 53 29 0 10 62 83 135 3.82e-13 67.0
Msa0778950 AT3G46130.3 54.717 53 24 0 10 62 28 80 4.02e-13 65.9
Msa0778950 AT3G46130.4 54.717 53 24 0 10 62 38 90 4.16e-13 65.9
Msa0778950 AT5G06100.5 45.283 53 29 0 10 62 83 135 4.38e-13 67.0
Msa0778950 AT5G06100.2 45.283 53 29 0 10 62 83 135 4.38e-13 67.0
Msa0778950 AT5G06100.3 45.283 53 29 0 10 62 83 135 4.38e-13 67.0
Msa0778950 AT5G06100.4 45.283 53 29 0 10 62 83 135 4.38e-13 67.0
Msa0778950 AT2G36890.1 50.000 56 28 0 10 65 64 119 4.67e-13 66.2
Msa0778950 AT2G36890.2 50.000 56 28 0 10 65 105 160 4.99e-13 66.6
Msa0778950 AT5G14340.1 33.607 122 80 1 10 131 75 195 5.12e-13 65.9
Msa0778950 AT5G59780.3 54.717 53 24 0 10 62 59 111 5.51e-13 65.5
Msa0778950 AT4G26930.1 48.077 52 27 0 10 61 70 121 6.15e-13 66.6
Msa0778950 AT4G25560.2 51.852 54 25 1 20 72 5 58 6.24e-13 65.1
Msa0778950 AT1G63910.1 48.148 54 28 0 10 63 63 116 6.73e-13 66.2
Msa0778950 AT3G46130.1 54.717 53 24 0 10 62 60 112 6.87e-13 65.5
Msa0778950 AT1G74650.3 63.415 41 15 0 24 64 1 41 7.75e-13 65.5
Msa0778950 AT2G32460.1 47.170 53 28 0 10 62 69 121 9.87e-13 65.9
Msa0778950 AT2G32460.2 47.170 53 28 0 10 62 57 109 1.12e-12 65.9
Msa0778950 AT3G24310.1 49.231 65 33 0 10 74 69 133 1.24e-12 64.7
Msa0778950 AT1G74430.1 39.130 69 42 0 10 78 63 131 1.69e-12 64.7
Msa0778950 AT4G13480.1 43.836 73 41 0 10 82 57 129 2.08e-12 64.3
Msa0778950 AT4G18770.1 40.909 66 39 0 10 75 265 330 2.62e-12 64.7
Msa0778950 AT3G28910.2 62.500 40 15 0 24 63 1 40 3.67e-12 63.2
Msa0778950 AT3G28470.1 41.667 72 42 0 10 81 63 134 8.02e-12 63.2
Msa0778950 AT5G59780.1 61.905 42 16 0 21 62 5 46 8.77e-12 61.2
Msa0778950 AT3G11440.2 39.623 53 32 0 10 62 92 144 9.50e-12 63.2
Msa0778950 AT3G11440.3 39.623 53 32 0 10 62 92 144 1.02e-11 63.2
Msa0778950 AT3G11440.4 39.623 53 32 0 10 62 92 144 1.02e-11 63.2
Msa0778950 AT3G11440.1 39.623 53 32 0 10 62 92 144 1.02e-11 63.2
Msa0778950 AT3G46130.2 61.905 42 16 0 21 62 5 46 1.05e-11 61.2
Msa0778950 AT1G18960.1 38.095 63 39 0 13 75 59 121 1.16e-11 62.4
Msa0778950 AT3G01530.1 44.444 54 30 0 10 63 76 129 1.26e-11 61.2
Msa0778950 AT1G48000.1 36.170 94 60 0 10 103 83 176 1.75e-11 61.2
Msa0778950 AT1G25340.2 40.278 72 43 0 10 81 64 135 1.99e-11 61.6
Msa0778950 AT2G39880.1 47.170 53 28 0 10 62 98 150 2.28e-11 62.0
Msa0778950 AT1G25340.1 40.278 72 43 0 10 81 69 140 2.38e-11 61.2
Msa0778950 AT2G26960.1 46.154 52 28 0 10 61 71 122 2.61e-11 62.0
Msa0778950 AT1G68320.1 38.889 72 44 0 10 81 70 141 2.68e-11 61.2
Msa0778950 AT1G25340.3 40.278 72 43 0 10 81 64 135 3.07e-11 61.2
Msa0778950 AT1G26780.1 38.462 65 40 0 10 74 146 210 3.74e-11 60.8
Msa0778950 AT1G26780.2 38.462 65 40 0 10 74 146 210 4.15e-11 61.2
Msa0778950 AT5G40360.1 40.299 67 40 0 10 76 206 272 4.56e-11 60.8
Msa0778950 AT1G22640.2 62.857 35 13 0 35 69 16 50 5.59e-11 59.3
Msa0778950 AT3G09230.1 43.636 55 31 0 10 64 103 157 6.16e-11 60.8

Find 49 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACAATATCTCTACCAATT+TGG 0.131756 5_2:+60040708 None:intergenic
AATAATTTCATGAGCTTTCA+TGG 0.234255 5_2:+60040874 None:intergenic
CTAAGGTTACACAAACTTCT+AGG 0.260093 5_2:-60041156 Msa0778950:CDS
CTAATGATGTGAAGAATTAT+TGG 0.279813 5_2:-60040964 Msa0778950:CDS
TTGATTGCTGCAAGGCTTCC+TGG 0.284415 5_2:-60040995 Msa0778950:CDS
AACAATATCTCTACCAATTT+GGG 0.296916 5_2:+60040709 None:intergenic
AGTAGCATGGTGAAGGAAAA+TGG 0.336284 5_2:-60041623 Msa0778950:exon
ACTCAATCACCCTGGTTAAA+CGG 0.348752 5_2:-60040827 Msa0778950:CDS
ACTACGGTTCCAACCCAAAT+TGG 0.359424 5_2:-60040722 Msa0778950:CDS
TGAGCTTTCATGGTTTCCTT+AGG 0.373435 5_2:+60040884 None:intergenic
CTCAATCACCCTGGTTAAAC+GGG 0.374918 5_2:-60040826 Msa0778950:CDS
AACGAAAGTAGTGAGAAAAT+TGG 0.386087 5_2:-60040608 Msa0778950:CDS
ATTTAAGCCCCAACATCAAA+AGG 0.397127 5_2:-60041212 Msa0778950:intron
TTCATTATACCTGCTCTTTG+AGG 0.403494 5_2:+60041591 None:intergenic
GTTGAGAAAGTTCGAGGTTG+AGG 0.410219 5_2:+60040848 None:intergenic
CACCACATTGCACACGGTAT+TGG 0.452533 5_2:+60040656 None:intergenic
GTGGGACAGTTTATTGAACT+TGG 0.467551 5_2:-60040636 Msa0778950:CDS
AGCTTATCTTCCTCATGTCC+AGG 0.493786 5_2:+60041663 None:intergenic
TACACAAACTTCTAGGGAAT+AGG 0.496324 5_2:-60041149 Msa0778950:intron
TGAGTTGAAACCGCCACAAT+TGG 0.511436 5_2:+60040782 None:intergenic
ATTATGTTTCCCGTTTAACC+AGG 0.514417 5_2:+60040817 None:intergenic
CATTTAGTTCCTCAAAGAGC+AGG 0.517945 5_2:-60041600 Msa0778950:intron
GGTGTTTCACAACCAAGTCT+TGG 0.519690 5_2:-60040686 Msa0778950:CDS
CAAATTGGTAGAGATATTGT+TGG 0.531777 5_2:-60040707 Msa0778950:CDS
TTTAAGCCCCAACATCAAAA+GGG 0.538516 5_2:-60041211 Msa0778950:intron
GGACAGTTTATTGAACTTGG+AGG 0.538678 5_2:-60040633 Msa0778950:CDS
GATTGAGTTGAGAAAGTTCG+AGG 0.541022 5_2:+60040842 None:intergenic
ACATCATTAGCTGTTCTACC+AGG 0.557444 5_2:+60040977 None:intergenic
ATATCTCTACCAATTTGGGT+TGG 0.559934 5_2:+60040713 None:intergenic
ATGAAGTTGATATGATGCTA+AGG 0.561414 5_2:-60041173 Msa0778950:CDS
ATTGGAGCATTACCAAGACT+TGG 0.564656 5_2:+60040674 None:intergenic
TAAGGTTACACAAACTTCTA+GGG 0.567241 5_2:-60041155 Msa0778950:CDS
TGCATTAAGTAGCATGGTGA+AGG 0.571985 5_2:-60041630 Msa0778950:five_prime_UTR
AGTAGTGAGAAAATTGGCTC+AGG 0.574847 5_2:-60040602 Msa0778950:CDS
TACTAATGTGACACCAATTG+TGG 0.579672 5_2:-60040795 Msa0778950:CDS
TCGTGATAATAAAGAGACTA+CGG 0.595354 5_2:-60040738 Msa0778950:CDS
AGAAAAGGTGCCTGGACATG+AGG 0.601530 5_2:-60041673 None:intergenic
CTGTCCCACCACATTGCACA+CGG 0.602823 5_2:+60040650 None:intergenic
CAATACCGTGTGCAATGTGG+TGG 0.603004 5_2:-60040655 Msa0778950:CDS
GATGGTCATTGATTGCTGCA+AGG 0.608516 5_2:-60041003 Msa0778950:CDS
TGAGGAAGATAAGCTACTCA+AGG 0.609093 5_2:-60041655 Msa0778950:five_prime_UTR
AAGGCTTGCATTAAGTAGCA+TGG 0.624870 5_2:-60041636 Msa0778950:five_prime_UTR
CAAAAGGGAAAGCTTTGCTG+AGG 0.640568 5_2:-60041196 Msa0778950:CDS
TTATGTTTCCCGTTTAACCA+GGG 0.652350 5_2:+60040818 None:intergenic
TAATGTGACACCAATTGTGG+CGG 0.653367 5_2:-60040792 Msa0778950:CDS
CTTTCTCAACTCAATCACCC+TGG 0.672715 5_2:-60040835 Msa0778950:CDS
GTGGCGGTTTCAACTCAACA+AGG 0.691076 5_2:-60040776 Msa0778950:CDS
CTCCAATACCGTGTGCAATG+TGG 0.724983 5_2:-60040658 Msa0778950:CDS
AATACCGTGTGCAATGTGGT+GGG 0.725118 5_2:-60040654 Msa0778950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATGAATGTTATTTATTCT+AGG - chr5_2:60040656-60040675 Msa0778950:CDS 15.0%
!! ATATGTAATATGTATTTAGA+TGG - chr5_2:60041210-60041229 Msa0778950:intron 15.0%
!!! TAATGAATGTTATTTATTCT+AGG - chr5_2:60040656-60040675 Msa0778950:CDS 15.0%
!! ATATGTAATATGTATTTAGA+TGG - chr5_2:60041210-60041229 Msa0778950:intron 15.0%
!!! AATTGGCTTAATTAATGATT+TGG - chr5_2:60040754-60040773 Msa0778950:CDS 20.0%
!! TTGTAACGTTAATAACTTAT+GGG + chr5_2:60040812-60040831 None:intergenic 20.0%
!! ATTGTAACGTTAATAACTTA+TGG + chr5_2:60040813-60040832 None:intergenic 20.0%
!! AAGTTATTAACGTTACAATT+TGG - chr5_2:60040814-60040833 Msa0778950:CDS 20.0%
!! ATTGTAACGTTAATAACTTT+GGG + chr5_2:60040872-60040891 None:intergenic 20.0%
!! AATTGTAACGTTAATAACTT+TGG + chr5_2:60040814-60040833 None:intergenic 20.0%
!! AAGTTATTAACGTTACAATT+TGG - chr5_2:60040814-60040833 Msa0778950:CDS 20.0%
!!! AACTTATTTTTGTTTCGTTT+TGG - chr5_2:60040902-60040921 Msa0778950:CDS 20.0%
!! TATTCATTATATGATGTTTG+TGG - chr5_2:60041127-60041146 Msa0778950:intron 20.0%
!! AAGCATATATATGCTAATTA+TGG + chr5_2:60041155-60041174 None:intergenic 20.0%
!!! AATTGGCTTAATTAATGATT+TGG - chr5_2:60040754-60040773 Msa0778950:CDS 20.0%
!! TTGTAACGTTAATAACTTAT+GGG + chr5_2:60040812-60040831 None:intergenic 20.0%
!! ATTGTAACGTTAATAACTTA+TGG + chr5_2:60040813-60040832 None:intergenic 20.0%
!! AAGTTATTAACGTTACAATT+TGG - chr5_2:60040814-60040833 Msa0778950:CDS 20.0%
!! ATTGTAACGTTAATAACTTT+GGG + chr5_2:60040872-60040891 None:intergenic 20.0%
!! AATTGTAACGTTAATAACTT+TGG + chr5_2:60040814-60040833 None:intergenic 20.0%
!! AAGTTATTAACGTTACAATT+TGG - chr5_2:60040814-60040833 Msa0778950:CDS 20.0%
!!! AACTTATTTTTGTTTCGTTT+TGG - chr5_2:60040902-60040921 Msa0778950:CDS 20.0%
!! TATTCATTATATGATGTTTG+TGG - chr5_2:60041127-60041146 Msa0778950:intron 20.0%
!! AAGCATATATATGCTAATTA+TGG + chr5_2:60041155-60041174 None:intergenic 20.0%
! AACCATGCATAATTACTTAA+AGG - chr5_2:60040730-60040749 Msa0778950:CDS 25.0%
! CATAATTACTTAAAGGCAAT+TGG - chr5_2:60040737-60040756 Msa0778950:CDS 25.0%
! GTAACCAACAAATAACTTAA+GGG + chr5_2:60040781-60040800 None:intergenic 25.0%
! TGTAACCAACAAATAACTTA+AGG + chr5_2:60040782-60040801 None:intergenic 25.0%
!!! GTTATTTGTTGGTTACATTT+TGG - chr5_2:60040785-60040804 Msa0778950:CDS 25.0%
! GTAACCAACAAATAACTTAA+GGG + chr5_2:60040781-60040800 None:intergenic 25.0%
! TGTAACCAACAAATAACTTA+AGG + chr5_2:60040782-60040801 None:intergenic 25.0%
!!! GTTATTTGTTGGTTACATTT+TGG - chr5_2:60040785-60040804 Msa0778950:CDS 25.0%
!!! AATGAATATTAACTTGTCCT+TGG + chr5_2:60041115-60041134 None:intergenic 25.0%
! CTAATGATGTGAAGAATTAT+TGG - chr5_2:60041267-60041286 Msa0778950:intron 25.0%
! AGAAAAGAAAGAAAAACCTA+AGG - chr5_2:60041331-60041350 Msa0778950:intron 25.0%
! AATAATTTCATGAGCTTTCA+TGG + chr5_2:60041360-60041379 None:intergenic 25.0%
! AACAATATCTCTACCAATTT+GGG + chr5_2:60041525-60041544 None:intergenic 25.0%
! AACCATGCATAATTACTTAA+AGG - chr5_2:60040730-60040749 Msa0778950:CDS 25.0%
! CATAATTACTTAAAGGCAAT+TGG - chr5_2:60040737-60040756 Msa0778950:CDS 25.0%
! GTAACCAACAAATAACTTAA+GGG + chr5_2:60040781-60040800 None:intergenic 25.0%
! TGTAACCAACAAATAACTTA+AGG + chr5_2:60040782-60040801 None:intergenic 25.0%
!!! GTTATTTGTTGGTTACATTT+TGG - chr5_2:60040785-60040804 Msa0778950:CDS 25.0%
! GTAACCAACAAATAACTTAA+GGG + chr5_2:60040781-60040800 None:intergenic 25.0%
! TGTAACCAACAAATAACTTA+AGG + chr5_2:60040782-60040801 None:intergenic 25.0%
!!! GTTATTTGTTGGTTACATTT+TGG - chr5_2:60040785-60040804 Msa0778950:CDS 25.0%
!!! AATGAATATTAACTTGTCCT+TGG + chr5_2:60041115-60041134 None:intergenic 25.0%
! CTAATGATGTGAAGAATTAT+TGG - chr5_2:60041267-60041286 Msa0778950:intron 25.0%
! AGAAAAGAAAGAAAAACCTA+AGG - chr5_2:60041331-60041350 Msa0778950:intron 25.0%
! AATAATTTCATGAGCTTTCA+TGG + chr5_2:60041360-60041379 None:intergenic 25.0%
! AACAATATCTCTACCAATTT+GGG + chr5_2:60041525-60041544 None:intergenic 25.0%
TGCCTTTAAGTAATTATGCA+TGG + chr5_2:60040735-60040754 None:intergenic 30.0%
!! ATGAAGTTGATATGATGCTA+AGG - chr5_2:60041058-60041077 Msa0778950:intron 30.0%
TAAGGTTACACAAACTTCTA+GGG - chr5_2:60041076-60041095 Msa0778950:intron 30.0%
TCGTGATAATAAAGAGACTA+CGG - chr5_2:60041493-60041512 Msa0778950:intron 30.0%
CAACAATATCTCTACCAATT+TGG + chr5_2:60041526-60041545 None:intergenic 30.0%
CAAATTGGTAGAGATATTGT+TGG - chr5_2:60041524-60041543 Msa0778950:intron 30.0%
AACGAAAGTAGTGAGAAAAT+TGG - chr5_2:60041623-60041642 Msa0778950:exon 30.0%
TGCCTTTAAGTAATTATGCA+TGG + chr5_2:60040735-60040754 None:intergenic 30.0%
!! ATGAAGTTGATATGATGCTA+AGG - chr5_2:60041058-60041077 Msa0778950:intron 30.0%
TAAGGTTACACAAACTTCTA+GGG - chr5_2:60041076-60041095 Msa0778950:intron 30.0%
TCGTGATAATAAAGAGACTA+CGG - chr5_2:60041493-60041512 Msa0778950:intron 30.0%
CAACAATATCTCTACCAATT+TGG + chr5_2:60041526-60041545 None:intergenic 30.0%
CAAATTGGTAGAGATATTGT+TGG - chr5_2:60041524-60041543 Msa0778950:intron 30.0%
AACGAAAGTAGTGAGAAAAT+TGG - chr5_2:60041623-60041642 Msa0778950:exon 30.0%
TTCATTATACCTGCTCTTTG+AGG + chr5_2:60040643-60040662 None:intergenic 35.0%
TGGTCCCTTAAGTTATTTGT+TGG - chr5_2:60040774-60040793 Msa0778950:CDS 35.0%
TGGTCCCTTAAGTTATTTGT+TGG - chr5_2:60040774-60040793 Msa0778950:CDS 35.0%
TTCAATCCTGTCATGTGTAA+AGG + chr5_2:60040961-60040980 None:intergenic 35.0%
TACACATGACAGGATTGAAT+AGG - chr5_2:60040962-60040981 Msa0778950:CDS 35.0%
ATTTAAGCCCCAACATCAAA+AGG - chr5_2:60041019-60041038 Msa0778950:intron 35.0%
TTTAAGCCCCAACATCAAAA+GGG - chr5_2:60041020-60041039 Msa0778950:intron 35.0%
! AAGCTTTCCCTTTTGATGTT+GGG + chr5_2:60041030-60041049 None:intergenic 35.0%
! AAAGCTTTCCCTTTTGATGT+TGG + chr5_2:60041031-60041050 None:intergenic 35.0%
CTAAGGTTACACAAACTTCT+AGG - chr5_2:60041075-60041094 Msa0778950:intron 35.0%
! TACACAAACTTCTAGGGAAT+AGG - chr5_2:60041082-60041101 Msa0778950:intron 35.0%
TTATGTTTCCCGTTTAACCA+GGG + chr5_2:60041416-60041435 None:intergenic 35.0%
ATTATGTTTCCCGTTTAACC+AGG + chr5_2:60041417-60041436 None:intergenic 35.0%
TACTAATGTGACACCAATTG+TGG - chr5_2:60041436-60041455 Msa0778950:intron 35.0%
ATATCTCTACCAATTTGGGT+TGG + chr5_2:60041521-60041540 None:intergenic 35.0%
TTCATTATACCTGCTCTTTG+AGG + chr5_2:60040643-60040662 None:intergenic 35.0%
TGGTCCCTTAAGTTATTTGT+TGG - chr5_2:60040774-60040793 Msa0778950:CDS 35.0%
TGGTCCCTTAAGTTATTTGT+TGG - chr5_2:60040774-60040793 Msa0778950:CDS 35.0%
TTCAATCCTGTCATGTGTAA+AGG + chr5_2:60040961-60040980 None:intergenic 35.0%
TACACATGACAGGATTGAAT+AGG - chr5_2:60040962-60040981 Msa0778950:CDS 35.0%
ATTTAAGCCCCAACATCAAA+AGG - chr5_2:60041019-60041038 Msa0778950:intron 35.0%
TTTAAGCCCCAACATCAAAA+GGG - chr5_2:60041020-60041039 Msa0778950:intron 35.0%
! AAGCTTTCCCTTTTGATGTT+GGG + chr5_2:60041030-60041049 None:intergenic 35.0%
! AAAGCTTTCCCTTTTGATGT+TGG + chr5_2:60041031-60041050 None:intergenic 35.0%
CTAAGGTTACACAAACTTCT+AGG - chr5_2:60041075-60041094 Msa0778950:intron 35.0%
! TACACAAACTTCTAGGGAAT+AGG - chr5_2:60041082-60041101 Msa0778950:intron 35.0%
TTATGTTTCCCGTTTAACCA+GGG + chr5_2:60041416-60041435 None:intergenic 35.0%
ATTATGTTTCCCGTTTAACC+AGG + chr5_2:60041417-60041436 None:intergenic 35.0%
TACTAATGTGACACCAATTG+TGG - chr5_2:60041436-60041455 Msa0778950:intron 35.0%
ATATCTCTACCAATTTGGGT+TGG + chr5_2:60041521-60041540 None:intergenic 35.0%
TGAGGAAGATAAGCTACTCA+AGG - chr5_2:60040576-60040595 Msa0778950:CDS 40.0%
AAGGCTTGCATTAAGTAGCA+TGG - chr5_2:60040595-60040614 Msa0778950:CDS 40.0%
TGCATTAAGTAGCATGGTGA+AGG - chr5_2:60040601-60040620 Msa0778950:CDS 40.0%
AGTAGCATGGTGAAGGAAAA+TGG - chr5_2:60040608-60040627 Msa0778950:CDS 40.0%
! CATTTAGTTCCTCAAAGAGC+AGG - chr5_2:60040631-60040650 Msa0778950:CDS 40.0%
TCATGTGTAAAGGACTAGAG+TGG + chr5_2:60040951-60040970 None:intergenic 40.0%
TCTAGTCCTTTACACATGAC+AGG - chr5_2:60040952-60040971 Msa0778950:CDS 40.0%
GCAGAAAAAGCTGTAGATTG+AGG - chr5_2:60040986-60041005 Msa0778950:CDS 40.0%
GAAAAAGCTGTAGATTGAGG+TGG - chr5_2:60040989-60041008 Msa0778950:CDS 40.0%
! AGCTTTCCCTTTTGATGTTG+GGG + chr5_2:60041029-60041048 None:intergenic 40.0%
AGGGAATAGGTAATCTTCCA+AGG - chr5_2:60041095-60041114 Msa0778950:intron 40.0%
ACATCATTAGCTGTTCTACC+AGG + chr5_2:60041257-60041276 None:intergenic 40.0%
TGAGCTTTCATGGTTTCCTT+AGG + chr5_2:60041350-60041369 None:intergenic 40.0%
!! GATTGAGTTGAGAAAGTTCG+AGG + chr5_2:60041392-60041411 None:intergenic 40.0%
ACTCAATCACCCTGGTTAAA+CGG - chr5_2:60041404-60041423 Msa0778950:intron 40.0%
TAATGTGACACCAATTGTGG+CGG - chr5_2:60041439-60041458 Msa0778950:intron 40.0%
! ATTGGAGCATTACCAAGACT+TGG + chr5_2:60041560-60041579 None:intergenic 40.0%
GTGGGACAGTTTATTGAACT+TGG - chr5_2:60041595-60041614 Msa0778950:intron 40.0%
GGACAGTTTATTGAACTTGG+AGG - chr5_2:60041598-60041617 Msa0778950:intron 40.0%
! AGTAGTGAGAAAATTGGCTC+AGG - chr5_2:60041629-60041648 Msa0778950:five_prime_UTR 40.0%
TGAGGAAGATAAGCTACTCA+AGG - chr5_2:60040576-60040595 Msa0778950:CDS 40.0%
AAGGCTTGCATTAAGTAGCA+TGG - chr5_2:60040595-60040614 Msa0778950:CDS 40.0%
TGCATTAAGTAGCATGGTGA+AGG - chr5_2:60040601-60040620 Msa0778950:CDS 40.0%
AGTAGCATGGTGAAGGAAAA+TGG - chr5_2:60040608-60040627 Msa0778950:CDS 40.0%
! CATTTAGTTCCTCAAAGAGC+AGG - chr5_2:60040631-60040650 Msa0778950:CDS 40.0%
TCATGTGTAAAGGACTAGAG+TGG + chr5_2:60040951-60040970 None:intergenic 40.0%
TCTAGTCCTTTACACATGAC+AGG - chr5_2:60040952-60040971 Msa0778950:CDS 40.0%
GCAGAAAAAGCTGTAGATTG+AGG - chr5_2:60040986-60041005 Msa0778950:CDS 40.0%
GAAAAAGCTGTAGATTGAGG+TGG - chr5_2:60040989-60041008 Msa0778950:CDS 40.0%
! AGCTTTCCCTTTTGATGTTG+GGG + chr5_2:60041029-60041048 None:intergenic 40.0%
AGGGAATAGGTAATCTTCCA+AGG - chr5_2:60041095-60041114 Msa0778950:intron 40.0%
ACATCATTAGCTGTTCTACC+AGG + chr5_2:60041257-60041276 None:intergenic 40.0%
TGAGCTTTCATGGTTTCCTT+AGG + chr5_2:60041350-60041369 None:intergenic 40.0%
!! GATTGAGTTGAGAAAGTTCG+AGG + chr5_2:60041392-60041411 None:intergenic 40.0%
ACTCAATCACCCTGGTTAAA+CGG - chr5_2:60041404-60041423 Msa0778950:intron 40.0%
TAATGTGACACCAATTGTGG+CGG - chr5_2:60041439-60041458 Msa0778950:intron 40.0%
! ATTGGAGCATTACCAAGACT+TGG + chr5_2:60041560-60041579 None:intergenic 40.0%
GTGGGACAGTTTATTGAACT+TGG - chr5_2:60041595-60041614 Msa0778950:intron 40.0%
GGACAGTTTATTGAACTTGG+AGG - chr5_2:60041598-60041617 Msa0778950:intron 40.0%
! AGTAGTGAGAAAATTGGCTC+AGG - chr5_2:60041629-60041648 Msa0778950:five_prime_UTR 40.0%
AGCTTATCTTCCTCATGTCC+AGG + chr5_2:60040571-60040590 None:intergenic 45.0%
GGTTGACAGAGGAAGAGTTA+AGG + chr5_2:60040930-60040949 None:intergenic 45.0%
CAAAAGGGAAAGCTTTGCTG+AGG - chr5_2:60041035-60041054 Msa0778950:intron 45.0%
! GATGGTCATTGATTGCTGCA+AGG - chr5_2:60041228-60041247 Msa0778950:intron 45.0%
GTTGAGAAAGTTCGAGGTTG+AGG + chr5_2:60041386-60041405 None:intergenic 45.0%
CTTTCTCAACTCAATCACCC+TGG - chr5_2:60041396-60041415 Msa0778950:intron 45.0%
CTCAATCACCCTGGTTAAAC+GGG - chr5_2:60041405-60041424 Msa0778950:intron 45.0%
! TGAGTTGAAACCGCCACAAT+TGG + chr5_2:60041452-60041471 None:intergenic 45.0%
ACTACGGTTCCAACCCAAAT+TGG - chr5_2:60041509-60041528 Msa0778950:intron 45.0%
GGTGTTTCACAACCAAGTCT+TGG - chr5_2:60041545-60041564 Msa0778950:intron 45.0%
AATACCGTGTGCAATGTGGT+GGG - chr5_2:60041577-60041596 Msa0778950:intron 45.0%
AGCTTATCTTCCTCATGTCC+AGG + chr5_2:60040571-60040590 None:intergenic 45.0%
GGTTGACAGAGGAAGAGTTA+AGG + chr5_2:60040930-60040949 None:intergenic 45.0%
CAAAAGGGAAAGCTTTGCTG+AGG - chr5_2:60041035-60041054 Msa0778950:intron 45.0%
! GATGGTCATTGATTGCTGCA+AGG - chr5_2:60041228-60041247 Msa0778950:intron 45.0%
GTTGAGAAAGTTCGAGGTTG+AGG + chr5_2:60041386-60041405 None:intergenic 45.0%
CTTTCTCAACTCAATCACCC+TGG - chr5_2:60041396-60041415 Msa0778950:intron 45.0%
CTCAATCACCCTGGTTAAAC+GGG - chr5_2:60041405-60041424 Msa0778950:intron 45.0%
! TGAGTTGAAACCGCCACAAT+TGG + chr5_2:60041452-60041471 None:intergenic 45.0%
ACTACGGTTCCAACCCAAAT+TGG - chr5_2:60041509-60041528 Msa0778950:intron 45.0%
GGTGTTTCACAACCAAGTCT+TGG - chr5_2:60041545-60041564 Msa0778950:intron 45.0%
AATACCGTGTGCAATGTGGT+GGG - chr5_2:60041577-60041596 Msa0778950:intron 45.0%
AGGACTAGAGTGGTTGACAG+AGG + chr5_2:60040941-60040960 None:intergenic 50.0%
TTGATTGCTGCAAGGCTTCC+TGG - chr5_2:60041236-60041255 Msa0778950:intron 50.0%
GTGGCGGTTTCAACTCAACA+AGG - chr5_2:60041455-60041474 Msa0778950:intron 50.0%
CTCCAATACCGTGTGCAATG+TGG - chr5_2:60041573-60041592 Msa0778950:intron 50.0%
CACCACATTGCACACGGTAT+TGG + chr5_2:60041578-60041597 None:intergenic 50.0%
CAATACCGTGTGCAATGTGG+TGG - chr5_2:60041576-60041595 Msa0778950:intron 50.0%
AGGACTAGAGTGGTTGACAG+AGG + chr5_2:60040941-60040960 None:intergenic 50.0%
TTGATTGCTGCAAGGCTTCC+TGG - chr5_2:60041236-60041255 Msa0778950:intron 50.0%
GTGGCGGTTTCAACTCAACA+AGG - chr5_2:60041455-60041474 Msa0778950:intron 50.0%
CTCCAATACCGTGTGCAATG+TGG - chr5_2:60041573-60041592 Msa0778950:intron 50.0%
CACCACATTGCACACGGTAT+TGG + chr5_2:60041578-60041597 None:intergenic 50.0%
CAATACCGTGTGCAATGTGG+TGG - chr5_2:60041576-60041595 Msa0778950:intron 50.0%
CTGTCCCACCACATTGCACA+CGG + chr5_2:60041584-60041603 None:intergenic 55.0%
CTGTCCCACCACATTGCACA+CGG + chr5_2:60041584-60041603 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 60040568 60041685 60040568 ID=Msa0778950;Name=Msa0778950
chr5_2 mRNA 60040568 60041685 60040568 ID=Msa0778950-mRNA-1;Parent=Msa0778950;Name=Msa0778950-mRNA-1;_AED=0.12;_eAED=0.12;_QI=59|0.5|0.33|1|1|1|3|0|186
chr5_2 exon 60040568 60041024 60040568 ID=Msa0778950-mRNA-1:exon:17574;Parent=Msa0778950-mRNA-1
chr5_2 exon 60041150 60041227 60041150 ID=Msa0778950-mRNA-1:exon:17573;Parent=Msa0778950-mRNA-1
chr5_2 exon 60041601 60041685 60041601 ID=Msa0778950-mRNA-1:exon:17572;Parent=Msa0778950-mRNA-1
chr5_2 five_prime_UTR 60041627 60041685 60041627 ID=Msa0778950-mRNA-1:five_prime_utr;Parent=Msa0778950-mRNA-1
chr5_2 CDS 60041601 60041626 60041601 ID=Msa0778950-mRNA-1:cds;Parent=Msa0778950-mRNA-1
chr5_2 CDS 60041150 60041227 60041150 ID=Msa0778950-mRNA-1:cds;Parent=Msa0778950-mRNA-1
chr5_2 CDS 60040568 60041024 60040568 ID=Msa0778950-mRNA-1:cds;Parent=Msa0778950-mRNA-1
Gene Sequence

>Msa0778950

ATGGCATTTAGTTCCTCAAAGAGCAGCCCCAACATCAAAAGGGAAAGCTTTGCTGAGGATGAAGTTGATATGATGCTAAGGTTACACAAACTTCTAGGGAATAGATGGTCATTGATTGCTGCAAGGCTTCCTGGTAGAACAGCTAATGATGTGAAGAATTATTGGCACACACATTTGAGAAAGAAGATTGTTTCAAGAACACTAGAAGAAAAGAAAGAAAAACCTAAGGAAACCATGAAAGCTCATGAAATTATTAAACCTCAACCTCGAACTTTCTCAACTCAATCACCCTGGTTAAACGGGAAACATAATACTAATGTGACACCAATTGTGGCGGTTTCAACTCAACAAGGTGAAGTTTCGCAAGATCGTGATAATAAAGAGACTACGGTTCCAACCCAAATTGGTAGAGATATTGTTGGTGTTTCACAACCAAGTCTTGGTAATGCTCCAATACCGTGTGCAATGTGGTGGGACAGTTTATTGAACTTGGAGGAGAACGAAAGTAGTGAGAAAATTGGCTCAGGCTCTTTTTTTACAAGACGAGAACTTTATTCTTGA
Protein sequence

>Msa0778950

MAFSSSKSSPNIKRESFAEDEVDMMLRLHKLLGNRWSLIAARLPGRTANDVKNYWHTHLRKKIVSRTLEEKKEKPKETMKAHEIIKPQPRTFSTQSPWLNGKHNTNVTPIVAVSTQQGEVSQDRDNKETTVPTQIGRDIVGVSQPSLGNAPIPCAMWWDSLLNLEENESSEKIGSGSFFTRRELYS*