AlfalfaGEDB | Msa0779010

M. sativa cultivar zhongmu-4 / Msa0779010

KEGG: K09422|K16166
GO: -
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0779010	AES99309.1	94.531	128	7	0	1	128	50	177	2.18e-82	254

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0779010	sp\|A0A2R6S148\|MYB1_ACTCC	72.222	108	30	0	11	118	7	114	1.05e-53	171

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0779010	G7K1W1	94.531	128	7	0	1	128	50	177	1.04e-82	254

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TFs/TRs:

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Gene ID	Type	Classification
Msa0779010	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0779010	MtrunA17_Chr5g0434841	81.197	117	22	0	1	117	9	125	1.77e-66	203
Msa0779010	MtrunA17_Chr5g0434831	80.357	112	22	0	6	117	1	112	2.32e-63	191
Msa0779010	MtrunA17_Chr5g0434931	75.630	119	29	0	3	121	26	144	2.47e-63	194
Msa0779010	MtrunA17_Chr7g0220341	74.797	123	29	1	6	126	19	141	4.00e-63	193
Msa0779010	MtrunA17_Chr5g0434911	80.734	109	21	0	10	118	19	127	1.68e-62	192
Msa0779010	MtrunA17_Chr7g0228991	73.504	117	31	0	4	120	21	137	1.43e-59	184
Msa0779010	MtrunA17_Chr8g0360111	73.832	107	28	0	6	112	19	125	1.93e-54	171
Msa0779010	MtrunA17_Chr7g0240821	71.000	100	29	0	17	116	6	105	3.25e-49	157
Msa0779010	MtrunA17_Chr8g0346561	63.889	108	39	0	9	116	9	116	7.94e-48	155
Msa0779010	MtrunA17_Chr7g0275911	62.385	109	41	0	8	116	8	116	1.02e-47	154

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0779010	AT1G66370.1	70.642	109	32	7	115	3	111	1.02e-52	166
Msa0779010	AT3G13540.1	62.281	114	43	9	122	20	133	3.30e-50	160
Msa0779010	AT1G66380.1	69.444	108	33	8	115	4	111	5.69e-48	151
Msa0779010	AT1G56650.1	70.755	106	31	10	115	6	111	5.06e-47	152
Msa0779010	AT1G66390.1	69.444	108	33	8	115	4	111	1.89e-46	150
Msa0779010	AT5G40330.1	59.483	116	47	1	116	1	116	4.99e-46	149
Msa0779010	AT3G27920.1	61.682	107	41	13	119	15	121	4.17e-45	146
Msa0779010	AT1G22640.1	56.897	116	50	9	124	9	124	7.79e-45	147
Msa0779010	AT5G14750.1	63.462	104	38	13	116	17	120	8.73e-45	145
Msa0779010	AT2G16720.1	57.018	114	49	9	122	9	122	1.85e-44	146

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Find 26 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTCCATGGACATACG+AGG	0.695965	5_2:+60114530	Msa0779010:CDS
AAGGCTTACATTCACATGTA+TGG	0.496054	5_2:+60114567	Msa0779010:CDS
AATAAGAGAGGTATGAGAAA+AGG	0.496326	5_2:+60114513	Msa0779010:CDS
AATGCTTTCTCTGTTGATAT+TGG	0.254863	5_2:-60115926	None:intergenic
ACAAGGCTACACAATCTCCT+AGG	0.480777	5_2:+60115973	Msa0779010:CDS
ACATCATTAGCAGTTCTACT+AGG	0.468263	5_2:-60116134	None:intergenic
ACATGTATGGTGAAGGAAAA+TGG	0.329845	5_2:+60114580	Msa0779010:CDS
ACTATTGGAATACACATCTG+CGG	0.687334	5_2:+60116162	Msa0779010:CDS
ATGAAGCTGATATGATCACA+AGG	0.671254	5_2:+60115956	Msa0779010:CDS
ATGCTTTCTCTGTTGATATT+GGG	0.193067	5_2:-60115925	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATTTAATTCCCAAAAGAAC+AGG	+	chr5_2:60114603-60114622	Msa0779010:CDS	30.0%
AATATAAGCACTCCTAACAT+TGG	-	chr5_2:60114889-60114908	None:intergenic	30.0%
TATATGTACTCATAGAGAGT+AGG	-	chr5_2:60115386-60115405	None:intergenic	30.0%
TCTCTATGAGTACATATAAG+AGG	+	chr5_2:60115388-60115407	Msa0779010:intron	30.0%
GTGGGTCATGTTTATATTAT+GGG	-	chr5_2:60115426-60115445	None:intergenic	30.0%
TGCATGTAGTCAAAGAAAAA+GGG	-	chr5_2:60115448-60115467	None:intergenic	30.0%
TTGCATGTAGTCAAAGAAAA+AGG	-	chr5_2:60115449-60115468	None:intergenic	30.0%
ATCTTCTGTTTGGTATTAGT+TGG	-	chr5_2:60115676-60115695	None:intergenic	30.0%
ATGCTTTCTCTGTTGATATT+GGG	-	chr5_2:60115928-60115947	None:intergenic	30.0%
AATGCTTTCTCTGTTGATAT+TGG	-	chr5_2:60115929-60115948	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	60114400	60116232	60114400	ID=Msa0779010;Name=Msa0779010
chr5_2	mRNA	60114400	60116232	60114400	ID=Msa0779010-mRNA-1;Parent=Msa0779010;Name=Msa0779010-mRNA-1;_AED=0.29;_eAED=0.30;_QI=0\|0\|0\|0.75\|0.66\|0.5\|4\|0\|128
chr5_2	exon	60114400	60114403	60114400	ID=Msa0779010-mRNA-1:exon:17593;Parent=Msa0779010-mRNA-1
chr5_2	exon	60114496	60114624	60114496	ID=Msa0779010-mRNA-1:exon:17594;Parent=Msa0779010-mRNA-1
chr5_2	exon	60115872	60116001	60115872	ID=Msa0779010-mRNA-1:exon:17595;Parent=Msa0779010-mRNA-1
chr5_2	exon	60116109	60116232	60116109	ID=Msa0779010-mRNA-1:exon:17596;Parent=Msa0779010-mRNA-1
chr5_2	CDS	60114400	60114403	60114400	ID=Msa0779010-mRNA-1:cds;Parent=Msa0779010-mRNA-1
chr5_2	CDS	60114496	60114624	60114496	ID=Msa0779010-mRNA-1:cds;Parent=Msa0779010-mRNA-1
chr5_2	CDS	60115872	60116001	60115872	ID=Msa0779010-mRNA-1:cds;Parent=Msa0779010-mRNA-1
chr5_2	CDS	60116109	60116232	60116109	ID=Msa0779010-mRNA-1:cds;Parent=Msa0779010-mRNA-1

Gene Sequence

>Msa0779010

ATGAGAAAGGTGCGTTTGGAGAATAAGAGAGGTATGAGAAAAGGTCCATGGACATACGAGGAAGACAACTTACTCAAGGCTTACATTCACATGTATGGTGAAGGAAAATGGCATTTAATTCCCAAAAGAACAGGATTGAATAGGTGCCGAAAAAGCTGTAGATTGAGGTGGGTAAATTATTTAAACCCCAATATCAACAGAGAAAGCATTACCGAAGATGAAGCTGATATGATCACAAGGCTACACAATCTCCTAGGGAATAGATGGTCATTGATTGCTGCAAGGCTTCCTAGTAGAACTGCTAATGATGTGAAAAACTATTGGAATACACATCTGCGGAAGAAGGTTCTTTCAGAATCATTAGAAAAAAATGAAAAAGAGAGATGA

Protein sequence

>Msa0779010

MRKVRLENKRGMRKGPWTYEEDNLLKAYIHMYGEGKWHLIPKRTGLNRCRKSCRLRWVNYLNPNINRESITEDEADMITRLHNLLGNRWSLIAARLPSRTANDVKNYWNTHLRKKVLSESLEKNEKER*