Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0779050 | G7K1V4 | 100.000 | 32 | 0 | 0 | 2 | 33 | 10 | 41 | 4.69e-13 | 70.5 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0779050 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0779050 | MtrunA17_Chr7g0220341 | 75.000 | 36 | 9 | 0 | 1 | 36 | 25 | 60 | 1.26e-13 | 62.8 |
| Msa0779050 | MtrunA17_Chr5g0434881 | 72.727 | 33 | 9 | 0 | 1 | 33 | 7 | 39 | 9.72e-12 | 53.5 |
| Msa0779050 | MtrunA17_Chr7g0228991 | 75.758 | 33 | 8 | 0 | 1 | 33 | 29 | 61 | 1.43e-11 | 57.0 |
| Msa0779050 | MtrunA17_Chr5g0434911 | 70.588 | 34 | 10 | 0 | 1 | 34 | 21 | 54 | 1.98e-11 | 56.6 |
| Msa0779050 | MtrunA17_Chr5g0434931 | 75.758 | 33 | 8 | 0 | 1 | 33 | 35 | 67 | 2.38e-11 | 56.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 18 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGAATGGATCTTTGTAATA+TGG | 0.313190 | 5_2:-60157924 | Msa0779050:CDS |
| ACAAGTATGGTGAAGGAAAA+TGG | 0.332221 | 5_2:-60162854 | Msa0779050:CDS |
| AAAGCTTATATTAACAAGTA+TGG | 0.371628 | 5_2:-60162867 | Msa0779050:CDS |
| GAAGGGTTTACAAATAGTTA+TGG | 0.453332 | 5_2:-60157974 | Msa0779050:CDS |
| AGTTATGGTGGCAATGGTGG+TGG | 0.468446 | 5_2:-60157959 | Msa0779050:CDS |
| CATTTAATTCCTAAAAGAGC+AGG | 0.533333 | 5_2:-60162831 | Msa0779050:intron |
| ACAAATAGTTATGGTGGCAA+TGG | 0.538006 | 5_2:-60157965 | Msa0779050:CDS |
| TATGGTGGCAATGGTGGTGG+AGG | 0.549342 | 5_2:-60157956 | Msa0779050:CDS |
| ACTCCATTAGCATCAGCTGA+AGG | 0.561787 | 5_2:-60157992 | Msa0779050:intron |
| TATATTAACAAGTATGGTGA+AGG | 0.566944 | 5_2:-60162861 | Msa0779050:CDS |
| CTCCATTAGCATCAGCTGAA+GGG | 0.571596 | 5_2:-60157991 | Msa0779050:intron |
| TGGAGGAACACCCACACGAA+TGG | 0.593661 | 5_2:-60157939 | Msa0779050:CDS |
| GGGTTTACAAATAGTTATGG+TGG | 0.604733 | 5_2:-60157971 | Msa0779050:CDS |
| AATAGTTATGGTGGCAATGG+TGG | 0.621138 | 5_2:-60157962 | Msa0779050:CDS |
| ATTACAAAGATCCATTCGTG+TGG | 0.624180 | 5_2:+60157928 | None:intergenic |
| AAAACGTACGTGGACATCTG+AGG | 0.629051 | 5_2:-60162904 | Msa0779050:CDS |
| TTACAAAGATCCATTCGTGT+GGG | 0.649099 | 5_2:+60157929 | None:intergenic |
| GAGTCATGAGAAAACGTACG+TGG | 0.697352 | 5_2:-60162914 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTTTAAGAAATATAAA+TGG | - | chr5_2:60158311-60158330 | Msa0779050:intron | 10.0% |
| !! | ATAGTATTATTTATAATTGT+TGG | + | chr5_2:60159802-60159821 | None:intergenic | 10.0% |
| !!! | CTAAATTTGTTATTTTTTTA+AGG | + | chr5_2:60162103-60162122 | None:intergenic | 10.0% |
| !!! | TCAAAAAAAGTAAATTTTAT+TGG | - | chr5_2:60162368-60162387 | Msa0779050:intron | 10.0% |
| !!! | TTTTATATAATTTTGAAAAG+CGG | + | chr5_2:60162444-60162463 | None:intergenic | 10.0% |
| !! | TTAGAAAAGAAAATTATGTA+TGG | + | chr5_2:60158106-60158125 | None:intergenic | 15.0% |
| !!! | TATTGTGACAATATATTTTT+AGG | - | chr5_2:60158127-60158146 | Msa0779050:intron | 15.0% |
| !! | TGTTAATGCAATAATTTAAA+TGG | + | chr5_2:60158397-60158416 | None:intergenic | 15.0% |
| !!! | TTTTGTGAATATAAATCAAA+AGG | - | chr5_2:60158670-60158689 | Msa0779050:intron | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | - | chr5_2:60159050-60159069 | Msa0779050:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | - | chr5_2:60159051-60159070 | Msa0779050:intron | 15.0% |
| !!! | AATTAACCCTTTTTTTAATA+AGG | - | chr5_2:60159116-60159135 | Msa0779050:intron | 15.0% |
| !! | TAAAGTAGAATATAATGAAT+TGG | - | chr5_2:60159374-60159393 | Msa0779050:intron | 15.0% |
| !!! | CAATATTTTTTTTCTTCAAA+TGG | - | chr5_2:60159489-60159508 | Msa0779050:intron | 15.0% |
| !! | TAAAAGTAAATATACTAAAC+AGG | - | chr5_2:60159630-60159649 | Msa0779050:intron | 15.0% |
| !!! | ATTATATAGCAGAATATTTT+TGG | - | chr5_2:60160187-60160206 | Msa0779050:intron | 15.0% |
| !! | TTCAAAAATTTAAGAGTTTA+AGG | + | chr5_2:60161384-60161403 | None:intergenic | 15.0% |
| !! | AGATAAAAAGTAATAAAATC+TGG | - | chr5_2:60161284-60161303 | Msa0779050:intron | 15.0% |
| !! | TTTAAGCATAAATTAAACAA+GGG | - | chr5_2:60161400-60161419 | Msa0779050:intron | 15.0% |
| !! | AGATAAAAAGTAATAAAATC+TGG | + | chr5_2:60161284-60161303 | None:intergenic | 15.0% |
| !! | TTCAAAAATTTAAGAGTTTA+AGG | - | chr5_2:60161384-60161403 | Msa0779050:intron | 15.0% |
| !!! | AATTAATCAAACTTTGTTTT+AGG | - | chr5_2:60161822-60161841 | Msa0779050:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | - | chr5_2:60159051-60159070 | Msa0779050:intron | 15.0% |
| !!! | TCAATTCAAATTTGTTTAAT+GGG | + | chr5_2:60161539-60161558 | None:intergenic | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | - | chr5_2:60159050-60159069 | Msa0779050:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | - | chr5_2:60159051-60159070 | Msa0779050:intron | 15.0% |
| !!! | AAATTATAAATTTTTGAAGC+AGG | + | chr5_2:60162184-60162203 | None:intergenic | 15.0% |
| !!! | AACAATCATTTTATGAAATA+AGG | - | chr5_2:60162204-60162223 | Msa0779050:intron | 15.0% |
| !!! | AAATCATTATTTTTACTTAG+TGG | + | chr5_2:60162657-60162676 | None:intergenic | 15.0% |
| !! | AAAGCTTATATTAACAAGTA+TGG | - | chr5_2:60157958-60157977 | Msa0779050:CDS | 20.0% |
| !! | AACTTCAATCTAAAAAGAAT+AGG | + | chr5_2:60158592-60158611 | None:intergenic | 20.0% |
| !! | TATAAATCAAAAGGAAATCA+TGG | - | chr5_2:60158679-60158698 | Msa0779050:intron | 20.0% |
| !! | CAAAACCATAAATACAATTA+AGG | - | chr5_2:60158722-60158741 | Msa0779050:intron | 20.0% |
| !! | CATATCCTTAATTGTATTTA+TGG | + | chr5_2:60158730-60158749 | None:intergenic | 20.0% |
| !! | TTGACACCTTATTAAAAAAA+GGG | + | chr5_2:60159125-60159144 | None:intergenic | 20.0% |
| !! | TTTGACACCTTATTAAAAAA+AGG | + | chr5_2:60159126-60159145 | None:intergenic | 20.0% |
| !! | ACAACATTTAAAAAGTTAGA+GGG | - | chr5_2:60159149-60159168 | Msa0779050:intron | 20.0% |
| !! | TGTTGTATTGAAAAGTAAAA+TGG | - | chr5_2:60159450-60159469 | Msa0779050:intron | 20.0% |
| !! | GTTGTATTGAAAAGTAAAAT+GGG | - | chr5_2:60159451-60159470 | Msa0779050:intron | 20.0% |
| !! | TAAAATGGGTAATTATTCTT+AGG | - | chr5_2:60159465-60159484 | Msa0779050:intron | 20.0% |
| !! | ATTGTTAAGTAAGAAGAAAA+AGG | + | chr5_2:60159707-60159726 | None:intergenic | 20.0% |
| !!! | TTCTCAAATTAGTTTTCTAT+TGG | + | chr5_2:60160337-60160356 | None:intergenic | 20.0% |
| !! | AAGGGTTAAATATGTTTATA+GGG | - | chr5_2:60160367-60160386 | Msa0779050:intron | 20.0% |
| !!! | AATTTTGCGATAATTTTTTG+CGG | - | chr5_2:60161319-60161338 | Msa0779050:intron | 20.0% |
| !! | GTTTAAGCATAAATTAAACA+AGG | - | chr5_2:60161399-60161418 | Msa0779050:intron | 20.0% |
| !! | AGAGCTATTAAAATTAAGTA+AGG | + | chr5_2:60161474-60161493 | None:intergenic | 20.0% |
| !! | AAACAAATTTGAATTGAGTA+GGG | + | chr5_2:60161966-60161985 | None:intergenic | 20.0% |
| !! | TAAACAAATTTGAATTGAGT+AGG | + | chr5_2:60161965-60161984 | None:intergenic | 20.0% |
| !!! | AATTTTGCGATAATTTTTTG+CGG | + | chr5_2:60161319-60161338 | None:intergenic | 20.0% |
| !!! | TAATGGGTTAATTATGTTTT+TGG | + | chr5_2:60161947-60161966 | None:intergenic | 20.0% |
| !!! | CTCAATTCAAATTTGTTTAA+TGG | + | chr5_2:60161538-60161557 | None:intergenic | 20.0% |
| !! | TAAACAAATTTGAATTGAGT+AGG | - | chr5_2:60161965-60161984 | Msa0779050:intron | 20.0% |
| !! | AAACAAATTTGAATTGAGTA+GGG | - | chr5_2:60161966-60161985 | Msa0779050:intron | 20.0% |
| ! | TATATTAACAAGTATGGTGA+AGG | - | chr5_2:60157964-60157983 | Msa0779050:CDS | 25.0% |
| !!! | AGTTGTTAGTTTGATTGTTT+TGG | + | chr5_2:60158180-60158199 | None:intergenic | 25.0% |
| !! | AAATGGTGAATTTTTCACTA+AGG | + | chr5_2:60158380-60158399 | None:intergenic | 25.0% |
| !! | TAACATATCTTGTTTGTCTT+TGG | - | chr5_2:60158428-60158447 | Msa0779050:intron | 25.0% |
| ! | AAATATTTGGCTAACATACT+TGG | - | chr5_2:60158784-60158803 | Msa0779050:intron | 25.0% |
| ! | CACAACATTTAAAAAGTTAG+AGG | - | chr5_2:60159148-60159167 | Msa0779050:intron | 25.0% |
| ! | ATGAAAGAGAGAGAAAAAAA+AGG | - | chr5_2:60159302-60159321 | Msa0779050:intron | 25.0% |
| ! | TTCAAATGGTTCAGTTATTA+TGG | - | chr5_2:60159503-60159522 | Msa0779050:intron | 25.0% |
| ! | TCAAATGGTTCAGTTATTAT+GGG | - | chr5_2:60159504-60159523 | Msa0779050:intron | 25.0% |
| ! | TGAGTAATATACTAAACAAG+CGG | - | chr5_2:60159533-60159552 | Msa0779050:intron | 25.0% |
| ! | AAACAGGTCAAAGTTAATAT+TGG | - | chr5_2:60159646-60159665 | Msa0779050:intron | 25.0% |
| !! | TATAACAAGAGTATGGATAT+AGG | - | chr5_2:60159866-60159885 | Msa0779050:intron | 25.0% |
| !! | AGAACATCAAAATTTTCAAC+AGG | - | chr5_2:60159993-60160012 | Msa0779050:intron | 25.0% |
| ! | GTTTGTTTGGTAAAGAAAAA+AGG | + | chr5_2:60160024-60160043 | None:intergenic | 25.0% |
| ! | GTGAAATGAAAATGTTTGTT+TGG | + | chr5_2:60160037-60160056 | None:intergenic | 25.0% |
| ! | GGAAACATGCTAAATATAAT+AGG | + | chr5_2:60160155-60160174 | None:intergenic | 25.0% |
| ! | CTATATAATTATGACAAAGG+AGG | + | chr5_2:60160176-60160195 | None:intergenic | 25.0% |
| ! | CTGCTATATAATTATGACAA+AGG | + | chr5_2:60160179-60160198 | None:intergenic | 25.0% |
| ! | ATGATAAGGTTTATCAATGT+TGG | + | chr5_2:60160231-60160250 | None:intergenic | 25.0% |
| ! | ATTTGAGAAACATAGATACA+AGG | - | chr5_2:60160348-60160367 | Msa0779050:intron | 25.0% |
| ! | TTTGAGAAACATAGATACAA+GGG | - | chr5_2:60160349-60160368 | Msa0779050:intron | 25.0% |
| ! | CAAGGGTTAAATATGTTTAT+AGG | - | chr5_2:60160366-60160385 | Msa0779050:intron | 25.0% |
| !!! | TCTAGGGTTAAATATGTTTT+TGG | + | chr5_2:60160394-60160413 | None:intergenic | 25.0% |
| !!! | ATGAATAGAGAAGTATTTTC+AGG | - | chr5_2:60160518-60160537 | Msa0779050:intron | 25.0% |
| ! | ATCTTGAAATCATAATCTGT+TGG | + | chr5_2:60160736-60160755 | None:intergenic | 25.0% |
| ! | CTAGATCACATGAAAATATA+TGG | + | chr5_2:60160780-60160799 | None:intergenic | 25.0% |
| !! | CATATATTTTCATGTGATCT+AGG | - | chr5_2:60160778-60160797 | Msa0779050:intron | 25.0% |
| !!! | CATTAGTAAATTTTGTTTCC+TGG | + | chr5_2:60160829-60160848 | None:intergenic | 25.0% |
| !!! | AATCAAACTTTGTTTTAGCA+GGG | + | chr5_2:60161124-60161143 | None:intergenic | 25.0% |
| !!! | TAATCAAACTTTGTTTTAGC+AGG | + | chr5_2:60161125-60161144 | None:intergenic | 25.0% |
| !! | TTTCTAGTCCCTATAAAATA+GGG | - | chr5_2:60161432-60161451 | Msa0779050:intron | 25.0% |
| ! | AGTGCAGAAAAACAAAATTA+GGG | + | chr5_2:60161999-60162018 | None:intergenic | 25.0% |
| !!! | TAATCAAACTTTGTTTTAGG+AGG | - | chr5_2:60161825-60161844 | Msa0779050:intron | 25.0% |
| !!! | AATCAAACTTTGTTTTAGGA+GGG | - | chr5_2:60161826-60161845 | Msa0779050:intron | 25.0% |
| ! | AGTGCAGAAAAACAAAATTA+GGG | - | chr5_2:60161999-60162018 | Msa0779050:intron | 25.0% |
| !!! | TTACAAGGTCGTTATTTTAT+AGG | - | chr5_2:60162058-60162077 | Msa0779050:intron | 25.0% |
| !!! | TACAAGGTCGTTATTTTATA+GGG | - | chr5_2:60162059-60162078 | Msa0779050:intron | 25.0% |
| ! | AAATTTAGTCCCCTATAAAT+AGG | - | chr5_2:60162115-60162134 | Msa0779050:intron | 25.0% |
| ! | AATTTAGTCCCCTATAAATA+GGG | - | chr5_2:60162116-60162135 | Msa0779050:intron | 25.0% |
| CATTTAATTCCTAAAAGAGC+AGG | - | chr5_2:60157994-60158013 | Msa0779050:intron | 30.0% | |
| ! | TTCATTATACCTGCTCTTTT+AGG | + | chr5_2:60158006-60158025 | None:intergenic | 30.0% |
| TGTTTATTCTACTGCGTATT+TGG | - | chr5_2:60158029-60158048 | Msa0779050:intron | 30.0% | |
| TGAAAAGTAATGAAACCACT+AGG | - | chr5_2:60158199-60158218 | Msa0779050:intron | 30.0% | |
| GAAAAGTAATGAAACCACTA+GGG | - | chr5_2:60158200-60158219 | Msa0779050:intron | 30.0% | |
| AAAAGTAATGAAACCACTAG+GGG | - | chr5_2:60158201-60158220 | Msa0779050:intron | 30.0% | |
| TGAAATCGAATCTAATTCGA+TGG | + | chr5_2:60158249-60158268 | None:intergenic | 30.0% | |
| !! | GTTGGTAGCATGAATAATAT+TGG | - | chr5_2:60158474-60158493 | Msa0779050:intron | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | - | chr5_2:60159081-60159100 | Msa0779050:intron | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | - | chr5_2:60159082-60159101 | Msa0779050:intron | 30.0% |
| TAGCTACTATAACAAGAGTA+TGG | - | chr5_2:60159859-60159878 | Msa0779050:intron | 30.0% | |
| GAAGTAATACTTCTAGTGAA+GGG | + | chr5_2:60159914-60159933 | None:intergenic | 30.0% | |
| AGAAGTAATACTTCTAGTGA+AGG | + | chr5_2:60159915-60159934 | None:intergenic | 30.0% | |
| AATTAAGCTGCAAATACTTG+AGG | + | chr5_2:60159971-60159990 | None:intergenic | 30.0% | |
| ! | TTTTCATTTCACTTGATACC+AGG | - | chr5_2:60160045-60160064 | Msa0779050:intron | 30.0% |
| TTTCATTTCACTTGATACCA+GGG | - | chr5_2:60160046-60160065 | Msa0779050:intron | 30.0% | |
| GCTAAATATAATAGGCTTTG+TGG | + | chr5_2:60160147-60160166 | None:intergenic | 30.0% | |
| ATTTAACCCTAGATACAACA+TGG | - | chr5_2:60160401-60160420 | Msa0779050:intron | 30.0% | |
| TTGTTTCCATGTTGTATCTA+GGG | + | chr5_2:60160410-60160429 | None:intergenic | 30.0% | |
| ATTGTTTCCATGTTGTATCT+AGG | + | chr5_2:60160411-60160430 | None:intergenic | 30.0% | |
| !! | CTTTGTAATCTGTTTTGTTC+TGG | + | chr5_2:60160712-60160731 | None:intergenic | 30.0% |
| AATATATGGAGTCGAGATAA+CGG | + | chr5_2:60160766-60160785 | None:intergenic | 30.0% | |
| TTCCAATGATAAAGTAATCC+AGG | - | chr5_2:60160808-60160827 | Msa0779050:intron | 30.0% | |
| TTCCTGGATTACTTTATCAT+TGG | + | chr5_2:60160813-60160832 | None:intergenic | 30.0% | |
| CATTTGCAAAGAAATTGAGT+AGG | + | chr5_2:60160993-60161012 | None:intergenic | 30.0% | |
| ACTCAATTTCTTTGCAAATG+AGG | - | chr5_2:60160993-60161012 | Msa0779050:intron | 30.0% | |
| CAAGATTAGAACACTATGAA+AGG | - | chr5_2:60161187-60161206 | Msa0779050:intron | 30.0% | |
| !! | GTTTCTAGTCCCTATAAAAT+AGG | - | chr5_2:60161431-60161450 | Msa0779050:intron | 30.0% |
| ! | TAAGAGGTCCCTATTTTATA+GGG | + | chr5_2:60161443-60161462 | None:intergenic | 30.0% |
| ! | TTAAGAGGTCCCTATTTTAT+AGG | + | chr5_2:60161444-60161463 | None:intergenic | 30.0% |
| AAGTAAGGACTAAACTTAAG+AGG | + | chr5_2:60161459-60161478 | None:intergenic | 30.0% | |
| CAGTGCAGAAAAACAAAATT+AGG | + | chr5_2:60161998-60162017 | None:intergenic | 30.0% | |
| CAAGATTAGAACACTATGAA+AGG | + | chr5_2:60161187-60161206 | None:intergenic | 30.0% | |
| AAGTAAGGACTAAACTTACA+AGG | - | chr5_2:60161904-60161923 | Msa0779050:intron | 30.0% | |
| CAGTGCAGAAAAACAAAATT+AGG | - | chr5_2:60161998-60162017 | Msa0779050:intron | 30.0% | |
| AAGAAGTTCCCTATTTATAG+GGG | + | chr5_2:60162127-60162146 | None:intergenic | 30.0% | |
| GAAGAAGTTCCCTATTTATA+GGG | + | chr5_2:60162128-60162147 | None:intergenic | 30.0% | |
| CTATAAATAGGGAACTTCTT+CGG | - | chr5_2:60162127-60162146 | Msa0779050:intron | 30.0% | |
| !!! | AATTTTTGAAGCAGGAGTAT+CGG | + | chr5_2:60162176-60162195 | None:intergenic | 30.0% |
| TTCAATAGAATCAGTCAAAG+CGG | - | chr5_2:60162552-60162571 | Msa0779050:intron | 30.0% | |
| GAAGGGTTTACAAATAGTTA+TGG | - | chr5_2:60162851-60162870 | Msa0779050:CDS | 30.0% | |
| ACGAATGGATCTTTGTAATA+TGG | - | chr5_2:60162901-60162920 | Msa0779050:CDS | 30.0% | |
| ACAAGTATGGTGAAGGAAAA+TGG | - | chr5_2:60157971-60157990 | Msa0779050:CDS | 35.0% | |
| TCGAATCTAATTCGATGGTT+TGG | + | chr5_2:60158244-60158263 | None:intergenic | 35.0% | |
| AGAAAAGGTTTCTCTGTTGA+TGG | + | chr5_2:60158870-60158889 | None:intergenic | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | - | chr5_2:60159066-60159085 | Msa0779050:intron | 35.0% | |
| TGAGTGTCTTTGTCAAGTAT+TGG | - | chr5_2:60159328-60159347 | Msa0779050:intron | 35.0% | |
| ATGGTTCAGTTATTATGGGA+CGG | - | chr5_2:60159508-60159527 | Msa0779050:intron | 35.0% | |
| CAACAACTCAGAATTTCTCA+TGG | - | chr5_2:60159749-60159768 | Msa0779050:intron | 35.0% | |
| TAGTAGCTAGTGAAGACTAT+TGG | + | chr5_2:60159848-60159867 | None:intergenic | 35.0% | |
| AGTGAAGGGAAGTTTATTGT+TGG | + | chr5_2:60159900-60159919 | None:intergenic | 35.0% | |
| !! | GAACCTAAGACAATGGATTA+TGG | - | chr5_2:60160075-60160094 | Msa0779050:intron | 35.0% |
| !! | GTTGGATTGCTGATTTGTTT+AGG | + | chr5_2:60160213-60160232 | None:intergenic | 35.0% |
| AAATGCCGAAATTGTTAGGT+CGG | - | chr5_2:60160557-60160576 | Msa0779050:intron | 35.0% | |
| AACTCACACACACAAAATGT+AGG | + | chr5_2:60160612-60160631 | None:intergenic | 35.0% | |
| GAAAAGAGAATATCTCTACC+CGG | - | chr5_2:60160872-60160891 | Msa0779050:intron | 35.0% | |
| ACATCCTACAATCAACTGTT+TGG | + | chr5_2:60160902-60160921 | None:intergenic | 35.0% | |
| !!! | TTTGCGATAATTTTTTGCGG+AGG | + | chr5_2:60161322-60161341 | None:intergenic | 35.0% |
| ! | TTACAAGGTCGCAATTTTGT+AGG | - | chr5_2:60161919-60161938 | Msa0779050:intron | 35.0% |
| ! | TACAAGGTCGCAATTTTGTA+GGG | - | chr5_2:60161920-60161939 | Msa0779050:intron | 35.0% |
| AAGTAGGGACTAAACTTACA+AGG | - | chr5_2:60159066-60159085 | Msa0779050:intron | 35.0% | |
| CGAAGAAGTTCCCTATTTAT+AGG | + | chr5_2:60162129-60162148 | None:intergenic | 35.0% | |
| TCAATAGAATCAGTCAAAGC+GGG | - | chr5_2:60162553-60162572 | Msa0779050:intron | 35.0% | |
| ! | CTCCTGATGTTGATTATCTA+CGG | - | chr5_2:60162770-60162789 | Msa0779050:intron | 35.0% |
| ! | TCCTGATGTTGATTATCTAC+GGG | - | chr5_2:60162771-60162790 | Msa0779050:intron | 35.0% |
| GGGTTTACAAATAGTTATGG+TGG | - | chr5_2:60162854-60162873 | Msa0779050:CDS | 35.0% | |
| ACAAATAGTTATGGTGGCAA+TGG | - | chr5_2:60162860-60162879 | Msa0779050:CDS | 35.0% | |
| TTACAAAGATCCATTCGTGT+GGG | + | chr5_2:60162899-60162918 | None:intergenic | 35.0% | |
| ATTACAAAGATCCATTCGTG+TGG | + | chr5_2:60162900-60162919 | None:intergenic | 35.0% | |
| TAATGAAACCACTAGGGGTT+AGG | - | chr5_2:60158206-60158225 | Msa0779050:intron | 40.0% | |
| !! | TATGGTTTTGCGATGAATCG+TGG | + | chr5_2:60158712-60158731 | None:intergenic | 40.0% |
| ATTTGGCTAACATACTTGGC+AGG | - | chr5_2:60158788-60158807 | Msa0779050:intron | 40.0% | |
| TTTGGCTAACATACTTGGCA+GGG | - | chr5_2:60158789-60158808 | Msa0779050:intron | 40.0% | |
| GTCGAAAAAGTTGCAGATTG+AGG | - | chr5_2:60158822-60158841 | Msa0779050:intron | 40.0% | |
| GAAAAAGTTGCAGATTGAGG+TGG | - | chr5_2:60158825-60158844 | Msa0779050:intron | 40.0% | |
| !! | AGGTTTCTCTGTTGATGGTT+GGG | + | chr5_2:60158865-60158884 | None:intergenic | 40.0% |
| !! | AAGGTTTCTCTGTTGATGGT+TGG | + | chr5_2:60158866-60158885 | None:intergenic | 40.0% |
| ! | CAACAGAGAAACCTTTTCTG+AGG | - | chr5_2:60158871-60158890 | Msa0779050:intron | 40.0% |
| ATCAGCTTCATCCTCAGAAA+AGG | + | chr5_2:60158885-60158904 | None:intergenic | 40.0% | |
| CTCAGTTAAACTGAGAAGGA+GGG | + | chr5_2:60159244-60159263 | None:intergenic | 40.0% | |
| ACTCAGTTAAACTGAGAAGG+AGG | + | chr5_2:60159245-60159264 | None:intergenic | 40.0% | |
| CTGACTCAGTTAAACTGAGA+AGG | + | chr5_2:60159248-60159267 | None:intergenic | 40.0% | |
| CTTCTCAGTTTAACTGAGTC+AGG | - | chr5_2:60159246-60159265 | Msa0779050:intron | 40.0% | |
| ! | GGCATGTGGTAATTTTGCAA+GGG | + | chr5_2:60159950-60159969 | None:intergenic | 40.0% |
| ! | AGGCATGTGGTAATTTTGCA+AGG | + | chr5_2:60159951-60159970 | None:intergenic | 40.0% |
| GAGAATCGAACCTAAGACAA+TGG | - | chr5_2:60160068-60160087 | Msa0779050:intron | 40.0% | |
| CTGCCATAATCCATTGTCTT+AGG | + | chr5_2:60160081-60160100 | None:intergenic | 40.0% | |
| !! | CTAAGACAATGGATTATGGC+AGG | - | chr5_2:60160079-60160098 | Msa0779050:intron | 40.0% |
| ! | AGATTCAGTGATTTTGTGCC+AGG | - | chr5_2:60160104-60160123 | Msa0779050:intron | 40.0% |
| ! | ATAATAGGCTTTGTGGCCTA+TGG | + | chr5_2:60160140-60160159 | None:intergenic | 40.0% |
| !! | TTCACTTTGAAACTCAGAGC+TGG | + | chr5_2:60160263-60160282 | None:intergenic | 40.0% |
| TTGATTGGATTCCTGGTTCA+AGG | + | chr5_2:60160301-60160320 | None:intergenic | 40.0% | |
| ! | AGTTTTCTATTGGTAGAGCC+AGG | + | chr5_2:60160327-60160346 | None:intergenic | 40.0% |
| ACACTTGCTTGTTTGCGATA+CGG | + | chr5_2:60160445-60160464 | None:intergenic | 40.0% | |
| !!! | ATTTTCAGGTCTAGCTCAAC+TGG | - | chr5_2:60160532-60160551 | Msa0779050:intron | 40.0% |
| GGCAAAATGCCGAAATTGTT+AGG | - | chr5_2:60160553-60160572 | Msa0779050:intron | 40.0% | |
| ACACACAAAATGTAGGTACC+GGG | + | chr5_2:60160605-60160624 | None:intergenic | 40.0% | |
| CACACACAAAATGTAGGTAC+CGG | + | chr5_2:60160606-60160625 | None:intergenic | 40.0% | |
| TGCACCAAACAGTTGATTGT+AGG | - | chr5_2:60160895-60160914 | Msa0779050:intron | 40.0% | |
| GTAATAACCAATGCACCAGA+AGG | - | chr5_2:60160949-60160968 | Msa0779050:intron | 40.0% | |
| TCGGTACACCTCATAAATTG+AGG | - | chr5_2:60162146-60162165 | Msa0779050:intron | 40.0% | |
| TCGGTACACCTCAATTTATG+AGG | + | chr5_2:60162157-60162176 | None:intergenic | 40.0% | |
| GATAATCAACATCAGGAGCA+GGG | + | chr5_2:60162768-60162787 | None:intergenic | 40.0% | |
| AGATAATCAACATCAGGAGC+AGG | + | chr5_2:60162769-60162788 | None:intergenic | 40.0% | |
| ACCCGTAGATAATCAACATC+AGG | + | chr5_2:60162775-60162794 | None:intergenic | 40.0% | |
| AATAGTTATGGTGGCAATGG+TGG | - | chr5_2:60162863-60162882 | Msa0779050:CDS | 40.0% | |
| AAAACGTACGTGGACATCTG+AGG | - | chr5_2:60157921-60157940 | Msa0779050:CDS | 45.0% | |
| CATACTTGGCAGGGCTAAAT+AGG | - | chr5_2:60158798-60158817 | Msa0779050:intron | 45.0% | |
| CTGCAAATACTTGAGGCATG+TGG | + | chr5_2:60159964-60159983 | None:intergenic | 45.0% | |
| ! | GCTGGTCTGACAGTATGATA+AGG | + | chr5_2:60160245-60160264 | None:intergenic | 45.0% |
| TTGGATTCCTGGTTCAAGGA+TGG | + | chr5_2:60160297-60160316 | None:intergenic | 45.0% | |
| CAGGAGATTGATTGGATTCC+TGG | + | chr5_2:60160308-60160327 | None:intergenic | 45.0% | |
| CAGGAATCCAATCAATCTCC+TGG | - | chr5_2:60160306-60160325 | Msa0779050:intron | 45.0% | |
| GACGTCCGACCTAACAATTT+CGG | + | chr5_2:60160565-60160584 | None:intergenic | 45.0% | |
| TTAGGTCGGACGTCATGATT+GGG | - | chr5_2:60160571-60160590 | Msa0779050:intron | 45.0% | |
| ! | CACACAAAATGTAGGTACCG+GGG | + | chr5_2:60160604-60160623 | None:intergenic | 45.0% |
| ! | ATATGGAGTCGAGATAACGG+AGG | + | chr5_2:60160763-60160782 | None:intergenic | 45.0% |
| !! | AATCAACTGTTTGGTGCACC+GGG | + | chr5_2:60160893-60160912 | None:intergenic | 45.0% |
| !! | CAATCAACTGTTTGGTGCAC+CGG | + | chr5_2:60160894-60160913 | None:intergenic | 45.0% |
| ATAACCAATGCACCAGAAGG+TGG | - | chr5_2:60160952-60160971 | Msa0779050:intron | 45.0% | |
| TTGCTTTCAGTTCCACCTTC+TGG | + | chr5_2:60160967-60160986 | None:intergenic | 45.0% | |
| !!! | CCAGGGCATCACTTTTTTAG+GGG | + | chr5_2:60162685-60162704 | None:intergenic | 45.0% |
| !!! | CCCAGGGCATCACTTTTTTA+GGG | + | chr5_2:60162686-60162705 | None:intergenic | 45.0% |
| CCCTAAAAAAGTGATGCCCT+GGG | - | chr5_2:60162683-60162702 | Msa0779050:intron | 45.0% | |
| !!! | ACCCAGGGCATCACTTTTTT+AGG | + | chr5_2:60162687-60162706 | None:intergenic | 45.0% |
| ACTCCATTAGCATCAGCTGA+AGG | - | chr5_2:60162833-60162852 | Msa0779050:CDS | 45.0% | |
| CTCCATTAGCATCAGCTGAA+GGG | - | chr5_2:60162834-60162853 | Msa0779050:CDS | 45.0% | |
| AACCCTTCAGCTGATGCTAA+TGG | + | chr5_2:60162839-60162858 | None:intergenic | 45.0% | |
| !! | TAAAAAAAATATTTATTTGA+TGG | - | chr5_2:60158501-60158520 | Msa0779050:intron | 5.0% |
| !! | ATATATATTATCAAAATATT+TGG | - | chr5_2:60158771-60158790 | Msa0779050:intron | 5.0% |
| !!! | TAAGTAAATTTTTTTTTTAT+AGG | - | chr5_2:60159021-60159040 | Msa0779050:intron | 5.0% |
| !!! | AAGTAAATTTTTTTTTTATA+GGG | - | chr5_2:60159022-60159041 | Msa0779050:intron | 5.0% |
| !!! | TAAGTAAATTTTTTTTTTAT+AGG | - | chr5_2:60159021-60159040 | Msa0779050:intron | 5.0% |
| !!! | AAGTAAATTTTTTTTTTATA+GGG | - | chr5_2:60159022-60159041 | Msa0779050:intron | 5.0% |
| !!! | TAAATTTGTTATTTTTTTAA+GGG | + | chr5_2:60162102-60162121 | None:intergenic | 5.0% |
| TGTTCACTCCTAACCCCTAG+TGG | + | chr5_2:60158217-60158236 | None:intergenic | 50.0% | |
| ACCAGCTCTCTCTTCTTGAG+AGG | - | chr5_2:60158452-60158471 | Msa0779050:intron | 50.0% | |
| ACCTCTCAAGAAGAGAGAGC+TGG | + | chr5_2:60158456-60158475 | None:intergenic | 50.0% | |
| GCTCTCTCTTCTTGAGAGGT+TGG | - | chr5_2:60158456-60158475 | Msa0779050:intron | 50.0% | |
| GTCTTAGGTTCGATTCTCCC+TGG | + | chr5_2:60160066-60160085 | None:intergenic | 50.0% | |
| GGTTCAAGGATGGTCTAAGG+TGG | + | chr5_2:60160287-60160306 | None:intergenic | 50.0% | |
| CCTGGTTCAAGGATGGTCTA+AGG | + | chr5_2:60160290-60160309 | None:intergenic | 50.0% | |
| CCTTAGACCATCCTTGAACC+AGG | - | chr5_2:60160287-60160306 | Msa0779050:intron | 50.0% | |
| GGTAGAGCCAGGAGATTGAT+TGG | + | chr5_2:60160316-60160335 | None:intergenic | 50.0% | |
| GTTAGGTCGGACGTCATGAT+TGG | - | chr5_2:60160570-60160589 | Msa0779050:intron | 50.0% | |
| TAGGTCGGACGTCATGATTG+GGG | - | chr5_2:60160572-60160591 | Msa0779050:intron | 50.0% | |
| AGTTCCACCTTCTGGTGCAT+TGG | + | chr5_2:60160959-60160978 | None:intergenic | 50.0% | |
| CCCCTAAAAAAGTGATGCCC+TGG | - | chr5_2:60162682-60162701 | Msa0779050:intron | 50.0% | |
| AGTCGGATACCCTATAGCCA+GGG | + | chr5_2:60162741-60162760 | None:intergenic | 50.0% | |
| TAGTCGGATACCCTATAGCC+AGG | + | chr5_2:60162742-60162761 | None:intergenic | 50.0% | |
| ATCAGGAGCAGGGTTGTAGT+CGG | + | chr5_2:60162758-60162777 | None:intergenic | 50.0% | |
| CAGCTGATGCTAATGGAGTG+TGG | + | chr5_2:60162832-60162851 | None:intergenic | 50.0% | |
| AGTTATGGTGGCAATGGTGG+TGG | - | chr5_2:60162866-60162885 | Msa0779050:CDS | 50.0% | |
| CATGATTGGGGTTCGAACCC+CGG | - | chr5_2:60160584-60160603 | Msa0779050:intron | 55.0% | |
| GTCGGATACCCTATAGCCAG+GGG | + | chr5_2:60162740-60162759 | None:intergenic | 55.0% | |
| !! | TATGGTGGCAATGGTGGTGG+AGG | - | chr5_2:60162869-60162888 | Msa0779050:CDS | 55.0% |
| TGGAGGAACACCCACACGAA+TGG | - | chr5_2:60162886-60162905 | Msa0779050:CDS | 55.0% | |
| GCTTTGTGGCCTATGGCAGC+TGG | + | chr5_2:60160133-60160152 | None:intergenic | 60.0% | |
| GGATACCCTATAGCCAGGGG+TGG | + | chr5_2:60162737-60162756 | None:intergenic | 60.0% | |
| ATAGCCAGGGGTGGCCCTGA+GGG | + | chr5_2:60162728-60162747 | None:intergenic | 65.0% | |
| TATAGCCAGGGGTGGCCCTG+AGG | + | chr5_2:60162729-60162748 | None:intergenic | 65.0% | |
| TCAGGGCCACCCCTGGCTAT+AGG | - | chr5_2:60162728-60162747 | Msa0779050:intron | 65.0% | |
| CAGGGCCACCCCTGGCTATA+GGG | - | chr5_2:60162729-60162748 | Msa0779050:intron | 65.0% | |
| GCCAGGCTGCCAGCTGCCAT+AGG | - | chr5_2:60160121-60160140 | Msa0779050:intron | 70.0% | |
| GCCTATGGCAGCTGGCAGCC+TGG | + | chr5_2:60160125-60160144 | None:intergenic | 70.0% | |
| ! | GCGCGAGGGGCGGCAACCCA+GGG | + | chr5_2:60162702-60162721 | None:intergenic | 80.0% |
| ! | CCAGGGGTGGCCCTGAGGGC+GGG | + | chr5_2:60162724-60162743 | None:intergenic | 80.0% |
| ! | GCCAGGGGTGGCCCTGAGGG+CGG | + | chr5_2:60162725-60162744 | None:intergenic | 80.0% |
| ! | GGCGCGAGGGGCGGCAACCC+AGG | + | chr5_2:60162703-60162722 | None:intergenic | 85.0% |
| ! | CTGAGGGCGGGCGCGAGGGG+CGG | + | chr5_2:60162712-60162731 | None:intergenic | 85.0% |
| ! | GCCCCTCGCGCCCGCCCTCA+GGG | - | chr5_2:60162711-60162730 | Msa0779050:intron | 85.0% |
| ! | GCCCTGAGGGCGGGCGCGAG+GGG | + | chr5_2:60162715-60162734 | None:intergenic | 85.0% |
| ! | GGCCCTGAGGGCGGGCGCGA+GGG | + | chr5_2:60162716-60162735 | None:intergenic | 85.0% |
| ! | TGGCCCTGAGGGCGGGCGCG+AGG | + | chr5_2:60162717-60162736 | None:intergenic | 85.0% |
| ! | CCCGCCCTCAGGGCCACCCC+TGG | - | chr5_2:60162721-60162740 | Msa0779050:intron | 85.0% |
| ! | CGCCCCTCGCGCCCGCCCTC+AGG | - | chr5_2:60162710-60162729 | Msa0779050:intron | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 60157916 | 60162931 | 60157916 | ID=Msa0779050;Name=Msa0779050 |
| chr5_2 | mRNA | 60157916 | 60162931 | 60157916 | ID=Msa0779050-mRNA-1;Parent=Msa0779050;Name=Msa0779050-mRNA-1;_AED=0.55;_eAED=0.55;_QI=0|0|0|0.5|1|1|2|0|62 |
| chr5_2 | exon | 60162832 | 60162931 | 60162832 | ID=Msa0779050-mRNA-1:exon:17606;Parent=Msa0779050-mRNA-1 |
| chr5_2 | exon | 60157916 | 60158004 | 60157916 | ID=Msa0779050-mRNA-1:exon:17605;Parent=Msa0779050-mRNA-1 |
| chr5_2 | CDS | 60162832 | 60162931 | 60162832 | ID=Msa0779050-mRNA-1:cds;Parent=Msa0779050-mRNA-1 |
| chr5_2 | CDS | 60157916 | 60158004 | 60157916 | ID=Msa0779050-mRNA-1:cds;Parent=Msa0779050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
