Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0779180 | XP_003616375.2 | 90.683 | 322 | 12 | 5 | 1 | 315 | 1 | 311 | 0.0 | 563 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0779180 | sp|Q9FJ00|RSL1_ARATH | 54.348 | 184 | 60 | 6 | 141 | 315 | 126 | 294 | 4.54e-50 | 171 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0779180 | G7K1Y5 | 90.683 | 322 | 12 | 5 | 1 | 315 | 1 | 311 | 0.0 | 563 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0779180 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0779180 | MtrunA17_Chr5g0435021 | 90.683 | 322 | 12 | 5 | 1 | 315 | 1 | 311 | 0.0 | 563 |
| Msa0779180 | MtrunA17_Chr5g0393721 | 61.111 | 72 | 26 | 1 | 221 | 290 | 221 | 292 | 1.08e-22 | 96.3 |
| Msa0779180 | MtrunA17_Chr1g0207311 | 48.936 | 94 | 40 | 3 | 203 | 290 | 173 | 264 | 8.62e-22 | 93.2 |
| Msa0779180 | MtrunA17_Chr1g0207301 | 68.333 | 60 | 17 | 1 | 233 | 290 | 297 | 356 | 1.17e-20 | 91.3 |
| Msa0779180 | MtrunA17_Chr3g0134741 | 57.143 | 70 | 28 | 1 | 223 | 290 | 228 | 297 | 5.63e-20 | 88.6 |
| Msa0779180 | MtrunA17_Chr1g0152651 | 61.290 | 62 | 22 | 1 | 231 | 290 | 281 | 342 | 9.01e-20 | 88.6 |
| Msa0779180 | MtrunA17_Chr8g0384141 | 49.351 | 77 | 32 | 1 | 207 | 283 | 104 | 173 | 7.16e-18 | 81.6 |
| Msa0779180 | MtrunA17_Chr7g0243041 | 66.038 | 53 | 18 | 0 | 231 | 283 | 33 | 85 | 7.54e-18 | 79.0 |
| Msa0779180 | MtrunA17_Chr3g0134001 | 58.621 | 58 | 24 | 0 | 231 | 288 | 178 | 235 | 1.47e-17 | 80.9 |
| Msa0779180 | MtrunA17_Chr4g0074161 | 40.196 | 102 | 57 | 1 | 186 | 283 | 164 | 265 | 2.87e-15 | 75.9 |
| Msa0779180 | MtrunA17_Chr1g0190731 | 49.180 | 61 | 31 | 0 | 223 | 283 | 192 | 252 | 1.24e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0779180 | AT5G37800.1 | 54.348 | 184 | 60 | 6 | 141 | 315 | 126 | 294 | 4.61e-51 | 171 |
| Msa0779180 | AT1G66470.1 | 61.905 | 147 | 47 | 3 | 169 | 313 | 147 | 286 | 1.94e-48 | 164 |
| Msa0779180 | AT2G14760.1 | 58.571 | 70 | 27 | 1 | 223 | 290 | 236 | 305 | 2.31e-21 | 93.2 |
| Msa0779180 | AT4G33880.1 | 58.571 | 70 | 27 | 1 | 223 | 290 | 265 | 334 | 3.83e-21 | 92.8 |
| Msa0779180 | AT1G27740.1 | 53.165 | 79 | 35 | 1 | 214 | 290 | 157 | 235 | 8.03e-21 | 90.1 |
| Msa0779180 | AT5G43175.1 | 57.143 | 77 | 29 | 2 | 218 | 290 | 124 | 200 | 1.10e-20 | 89.0 |
| Msa0779180 | AT5G01305.1 | 57.576 | 66 | 28 | 0 | 218 | 283 | 31 | 96 | 4.29e-20 | 86.3 |
| Msa0779180 | AT2G14760.3 | 49.398 | 83 | 27 | 2 | 223 | 290 | 236 | 318 | 5.60e-18 | 83.6 |
| Msa0779180 | AT2G24260.2 | 57.377 | 61 | 26 | 0 | 223 | 283 | 34 | 94 | 8.08e-17 | 79.0 |
| Msa0779180 | AT4G30980.1 | 43.617 | 94 | 45 | 2 | 190 | 283 | 104 | 189 | 2.63e-16 | 78.6 |
| Msa0779180 | AT2G24260.1 | 57.377 | 61 | 26 | 0 | 223 | 283 | 137 | 197 | 3.25e-16 | 78.6 |
| Msa0779180 | AT4G30980.2 | 43.617 | 94 | 45 | 2 | 190 | 283 | 152 | 237 | 4.37e-16 | 78.2 |
| Msa0779180 | AT3G21330.1 | 54.098 | 61 | 28 | 0 | 231 | 291 | 276 | 336 | 1.19e-15 | 77.0 |
| Msa0779180 | AT4G00120.1 | 44.186 | 86 | 46 | 2 | 198 | 283 | 88 | 171 | 2.33e-15 | 73.9 |
| Msa0779180 | AT5G58010.1 | 48.529 | 68 | 35 | 0 | 216 | 283 | 91 | 158 | 9.53e-15 | 73.9 |
| Msa0779180 | AT3G50330.1 | 64.615 | 65 | 23 | 0 | 231 | 295 | 126 | 190 | 2.03e-12 | 66.2 |
Find 39 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAGCTGTGCATGGCTTCT+TGG | 0.232597 | 5_2:-60333298 | None:intergenic |
| TGTTGGCAGCTGATGAATTT+TGG | 0.276615 | 5_2:+60333901 | Msa0779180:CDS |
| CTGCAAATTATTGTTCTCAT+TGG | 0.300125 | 5_2:-60332680 | None:intergenic |
| CATGGCTTCTTGGCATTGGC+AGG | 0.349622 | 5_2:-60333288 | None:intergenic |
| CTTGAAGAAGCGATCTTCTA+TGG | 0.360051 | 5_2:+60332930 | Msa0779180:CDS |
| CATTTGGCACAAGTTCTTGT+AGG | 0.374925 | 5_2:-60333509 | None:intergenic |
| AAATCTACCTTGGAACCATT+TGG | 0.383570 | 5_2:-60333525 | None:intergenic |
| GATGGTTCACAAAGCACTAA+TGG | 0.383807 | 5_2:+60332472 | Msa0779180:CDS |
| AATGCAAAAGAGAAGCAAAA+TGG | 0.391258 | 5_2:+60332805 | Msa0779180:CDS |
| TGTGCATGGCTTCTTGGCAT+TGG | 0.393772 | 5_2:-60333292 | None:intergenic |
| AAGTTTGAAACTTGCTGCTT+AGG | 0.397719 | 5_2:-60332378 | None:intergenic |
| TTCTTACTTGCAGCTGTGCA+TGG | 0.415931 | 5_2:-60333306 | None:intergenic |
| ACCTTGGCAGCAACACTTTG+AGG | 0.436246 | 5_2:-60333360 | None:intergenic |
| TCTCCTACTCTATGCAGAAA+AGG | 0.446579 | 5_2:+60332523 | Msa0779180:CDS |
| CTCCTACTCTATGCAGAAAA+GGG | 0.454283 | 5_2:+60332524 | Msa0779180:CDS |
| TCGTCATCACAAGGAACATT+TGG | 0.462816 | 5_2:-60332859 | None:intergenic |
| AGCAACACTTTGAGGATCCT+TGG | 0.463727 | 5_2:-60333352 | None:intergenic |
| TCCTCAAAGTGTTGCTGCCA+AGG | 0.467735 | 5_2:+60333359 | Msa0779180:CDS |
| CTACAAGAACTTGTGCCAAA+TGG | 0.480564 | 5_2:+60333510 | Msa0779180:CDS |
| GAAACTTCAAGTGGTAGCTA+TGG | 0.482106 | 5_2:+60332769 | Msa0779180:CDS |
| ACAATGTAGAATGTTGTTGT+TGG | 0.496110 | 5_2:-60332350 | None:intergenic |
| AGAACAATAATTTGCAGCAA+TGG | 0.497897 | 5_2:+60332686 | Msa0779180:CDS |
| GAGTCTTTGATTAATTTCAA+AGG | 0.522051 | 5_2:+60332583 | Msa0779180:CDS |
| GGTTGATTTGGTTACCATGT+TGG | 0.524353 | 5_2:+60333671 | Msa0779180:intron |
| ACACTTTGAGGATCCTTGGA+TGG | 0.541193 | 5_2:-60333348 | None:intergenic |
| ACAAATTTGTGTATGCTGCA+AGG | 0.557456 | 5_2:+60332733 | Msa0779180:CDS |
| TCATCGTCGTCGTCATCACA+AGG | 0.575313 | 5_2:-60332868 | None:intergenic |
| GGTGGAAAAGCTCCTGACAT+TGG | 0.579618 | 5_2:+60333933 | Msa0779180:CDS |
| AGAAGATCGCTTCTTCAAGA+CGG | 0.585959 | 5_2:-60332926 | None:intergenic |
| GCTAATTGCTTTCTCCAACA+TGG | 0.589402 | 5_2:-60333685 | None:intergenic |
| CAAAATGGTGAAAGTTCATG+TGG | 0.590862 | 5_2:+60332820 | Msa0779180:CDS |
| AATAGCTTTGAAACTTCAAG+TGG | 0.597044 | 5_2:+60332760 | Msa0779180:CDS |
| ACTTGTGCCAAATGGTTCCA+AGG | 0.597324 | 5_2:+60333518 | Msa0779180:CDS |
| TAGAGTAGGAGAATTTGTAA+TGG | 0.598886 | 5_2:-60332512 | None:intergenic |
| ACATAAGTCAAATCCATCCA+AGG | 0.604373 | 5_2:+60333335 | Msa0779180:CDS |
| TCTATGATTGAAGAAGAAGA+TGG | 0.607243 | 5_2:+60332454 | Msa0779180:CDS |
| ATGGTGAAAGTTCATGTGGA+TGG | 0.618317 | 5_2:+60332824 | Msa0779180:CDS |
| GAAGAGAGAGAATAAGTGAG+AGG | 0.626364 | 5_2:+60333478 | Msa0779180:CDS |
| TATTACAACAATCTCATGCA+AGG | 0.632712 | 5_2:+60332616 | Msa0779180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGATAAATTAAAAATTGTTT+AGG | + | chr5_2:60333809-60333828 | Msa0779180:intron | 10.0% |
| !! | GATAAATTAAAAATTGTTTA+GGG | + | chr5_2:60333810-60333829 | Msa0779180:intron | 10.0% |
| !! | TGATAAATTAAAAATTGTTT+AGG | + | chr5_2:60333809-60333828 | Msa0779180:intron | 10.0% |
| !! | GATAAATTAAAAATTGTTTA+GGG | + | chr5_2:60333810-60333829 | Msa0779180:intron | 10.0% |
| !!! | CAAATTATTAGAACATATTT+TGG | + | chr5_2:60333188-60333207 | Msa0779180:intron | 15.0% |
| !!! | ACTAGTTATTATATTTTTCT+TGG | + | chr5_2:60333833-60333852 | Msa0779180:intron | 15.0% |
| !!! | CAAATTATTAGAACATATTT+TGG | + | chr5_2:60333188-60333207 | Msa0779180:intron | 15.0% |
| !!! | ACTAGTTATTATATTTTTCT+TGG | + | chr5_2:60333833-60333852 | Msa0779180:intron | 15.0% |
| !! | AGATAAGATTTGTGTTTATA+GGG | + | chr5_2:60333252-60333271 | Msa0779180:intron | 20.0% |
| !! | AATTTACAAAGACTTTAACT+TGG | - | chr5_2:60333607-60333626 | None:intergenic | 20.0% |
| !!! | TTTTGTTCTATATTTGTTCA+TGG | + | chr5_2:60333872-60333891 | Msa0779180:intron | 20.0% |
| !! | AGATAAGATTTGTGTTTATA+GGG | + | chr5_2:60333252-60333271 | Msa0779180:intron | 20.0% |
| !! | AATTTACAAAGACTTTAACT+TGG | - | chr5_2:60333607-60333626 | None:intergenic | 20.0% |
| !!! | TTTTGTTCTATATTTGTTCA+TGG | + | chr5_2:60333872-60333891 | Msa0779180:intron | 20.0% |
| !!! | TGTTTTTGATGAGAATACTA+TGG | + | chr5_2:60332402-60332421 | Msa0779180:CDS | 25.0% |
| ! | GAGTCTTTGATTAATTTCAA+AGG | + | chr5_2:60332583-60332602 | Msa0779180:CDS | 25.0% |
| !!! | CACAAATTTGTGTTACTTTT+TGG | - | chr5_2:60332724-60332743 | None:intergenic | 25.0% |
| ! | ATGACTCTAAACATCATAAA+TGG | - | chr5_2:60332991-60333010 | None:intergenic | 25.0% |
| ! | GAGAACTTAATGAAATAGAA+TGG | + | chr5_2:60333222-60333241 | Msa0779180:intron | 25.0% |
| ! | GAGATAAGATTTGTGTTTAT+AGG | + | chr5_2:60333251-60333270 | Msa0779180:intron | 25.0% |
| ! | GATAAGATTTGTGTTTATAG+GGG | + | chr5_2:60333253-60333272 | Msa0779180:intron | 25.0% |
| ! | ATAAGATTTGTGTTTATAGG+GGG | + | chr5_2:60333254-60333273 | Msa0779180:intron | 25.0% |
| ! | ACTAATTTGAAAATCTACCT+TGG | - | chr5_2:60333538-60333557 | None:intergenic | 25.0% |
| ! | AAGAAAGCAACATAACATTT+AGG | - | chr5_2:60333561-60333580 | None:intergenic | 25.0% |
| !!! | TGTTTTTGATGAGAATACTA+TGG | + | chr5_2:60332402-60332421 | Msa0779180:CDS | 25.0% |
| ! | GAGTCTTTGATTAATTTCAA+AGG | + | chr5_2:60332583-60332602 | Msa0779180:CDS | 25.0% |
| !!! | CACAAATTTGTGTTACTTTT+TGG | - | chr5_2:60332724-60332743 | None:intergenic | 25.0% |
| ! | ATGACTCTAAACATCATAAA+TGG | - | chr5_2:60332991-60333010 | None:intergenic | 25.0% |
| ! | GAGAACTTAATGAAATAGAA+TGG | + | chr5_2:60333222-60333241 | Msa0779180:intron | 25.0% |
| ! | GAGATAAGATTTGTGTTTAT+AGG | + | chr5_2:60333251-60333270 | Msa0779180:intron | 25.0% |
| ! | GATAAGATTTGTGTTTATAG+GGG | + | chr5_2:60333253-60333272 | Msa0779180:intron | 25.0% |
| ! | ATAAGATTTGTGTTTATAGG+GGG | + | chr5_2:60333254-60333273 | Msa0779180:intron | 25.0% |
| ! | ACTAATTTGAAAATCTACCT+TGG | - | chr5_2:60333538-60333557 | None:intergenic | 25.0% |
| ! | AAGAAAGCAACATAACATTT+AGG | - | chr5_2:60333561-60333580 | None:intergenic | 25.0% |
| ACAATGTAGAATGTTGTTGT+TGG | - | chr5_2:60332353-60332372 | None:intergenic | 30.0% | |
| TCTATGATTGAAGAAGAAGA+TGG | + | chr5_2:60332454-60332473 | Msa0779180:CDS | 30.0% | |
| TAGAGTAGGAGAATTTGTAA+TGG | - | chr5_2:60332515-60332534 | None:intergenic | 30.0% | |
| TATTACAACAATCTCATGCA+AGG | + | chr5_2:60332616-60332635 | Msa0779180:CDS | 30.0% | |
| CTGCAAATTATTGTTCTCAT+TGG | - | chr5_2:60332683-60332702 | None:intergenic | 30.0% | |
| ! | AGAACAATAATTTGCAGCAA+TGG | + | chr5_2:60332686-60332705 | Msa0779180:CDS | 30.0% |
| !! | AATAGCTTTGAAACTTCAAG+TGG | + | chr5_2:60332760-60332779 | Msa0779180:CDS | 30.0% |
| AATGCAAAAGAGAAGCAAAA+TGG | + | chr5_2:60332805-60332824 | Msa0779180:CDS | 30.0% | |
| CAACTATGTGCAATATATCA+AGG | - | chr5_2:60333049-60333068 | None:intergenic | 30.0% | |
| TGATATATTGCACATAGTTG+CGG | + | chr5_2:60333049-60333068 | Msa0779180:intron | 30.0% | |
| TAAGATTTGTGTTTATAGGG+GGG | + | chr5_2:60333255-60333274 | Msa0779180:intron | 30.0% | |
| !! | ATTCTGATGATGAATTTTGC+AGG | + | chr5_2:60333650-60333669 | Msa0779180:intron | 30.0% |
| !!! | ATGAATTTTGCAGGTTGATT+TGG | + | chr5_2:60333659-60333678 | Msa0779180:intron | 30.0% |
| ATGAGAGAAAATGAAAGTTC+AGG | + | chr5_2:60333778-60333797 | Msa0779180:intron | 30.0% | |
| TGAGAGAAAATGAAAGTTCA+GGG | + | chr5_2:60333779-60333798 | Msa0779180:intron | 30.0% | |
| TCTATATTTGTTCATGGTGT+AGG | + | chr5_2:60333878-60333897 | Msa0779180:intron | 30.0% | |
| ACAATGTAGAATGTTGTTGT+TGG | - | chr5_2:60332353-60332372 | None:intergenic | 30.0% | |
| TCTATGATTGAAGAAGAAGA+TGG | + | chr5_2:60332454-60332473 | Msa0779180:CDS | 30.0% | |
| TAGAGTAGGAGAATTTGTAA+TGG | - | chr5_2:60332515-60332534 | None:intergenic | 30.0% | |
| TATTACAACAATCTCATGCA+AGG | + | chr5_2:60332616-60332635 | Msa0779180:CDS | 30.0% | |
| CTGCAAATTATTGTTCTCAT+TGG | - | chr5_2:60332683-60332702 | None:intergenic | 30.0% | |
| ! | AGAACAATAATTTGCAGCAA+TGG | + | chr5_2:60332686-60332705 | Msa0779180:CDS | 30.0% |
| !! | AATAGCTTTGAAACTTCAAG+TGG | + | chr5_2:60332760-60332779 | Msa0779180:CDS | 30.0% |
| AATGCAAAAGAGAAGCAAAA+TGG | + | chr5_2:60332805-60332824 | Msa0779180:CDS | 30.0% | |
| CAACTATGTGCAATATATCA+AGG | - | chr5_2:60333049-60333068 | None:intergenic | 30.0% | |
| TGATATATTGCACATAGTTG+CGG | + | chr5_2:60333049-60333068 | Msa0779180:intron | 30.0% | |
| TAAGATTTGTGTTTATAGGG+GGG | + | chr5_2:60333255-60333274 | Msa0779180:intron | 30.0% | |
| !! | ATTCTGATGATGAATTTTGC+AGG | + | chr5_2:60333650-60333669 | Msa0779180:intron | 30.0% |
| !!! | ATGAATTTTGCAGGTTGATT+TGG | + | chr5_2:60333659-60333678 | Msa0779180:intron | 30.0% |
| ATGAGAGAAAATGAAAGTTC+AGG | + | chr5_2:60333778-60333797 | Msa0779180:intron | 30.0% | |
| TGAGAGAAAATGAAAGTTCA+GGG | + | chr5_2:60333779-60333798 | Msa0779180:intron | 30.0% | |
| TCTATATTTGTTCATGGTGT+AGG | + | chr5_2:60333878-60333897 | Msa0779180:intron | 30.0% | |
| !! | AAGTTTGAAACTTGCTGCTT+AGG | - | chr5_2:60332381-60332400 | None:intergenic | 35.0% |
| ACAAATTTGTGTATGCTGCA+AGG | + | chr5_2:60332733-60332752 | Msa0779180:CDS | 35.0% | |
| CAAAATGGTGAAAGTTCATG+TGG | + | chr5_2:60332820-60332839 | Msa0779180:CDS | 35.0% | |
| AAGATTTGTGTTTATAGGGG+GGG | + | chr5_2:60333256-60333275 | Msa0779180:intron | 35.0% | |
| ACATAAGTCAAATCCATCCA+AGG | + | chr5_2:60333335-60333354 | Msa0779180:CDS | 35.0% | |
| AAATCTACCTTGGAACCATT+TGG | - | chr5_2:60333528-60333547 | None:intergenic | 35.0% | |
| ! | TGTTTTACTTGACCAATGTC+AGG | - | chr5_2:60333948-60333967 | None:intergenic | 35.0% |
| !! | AAGTTTGAAACTTGCTGCTT+AGG | - | chr5_2:60332381-60332400 | None:intergenic | 35.0% |
| ACAAATTTGTGTATGCTGCA+AGG | + | chr5_2:60332733-60332752 | Msa0779180:CDS | 35.0% | |
| CAAAATGGTGAAAGTTCATG+TGG | + | chr5_2:60332820-60332839 | Msa0779180:CDS | 35.0% | |
| AAGATTTGTGTTTATAGGGG+GGG | + | chr5_2:60333256-60333275 | Msa0779180:intron | 35.0% | |
| ACATAAGTCAAATCCATCCA+AGG | + | chr5_2:60333335-60333354 | Msa0779180:CDS | 35.0% | |
| AAATCTACCTTGGAACCATT+TGG | - | chr5_2:60333528-60333547 | None:intergenic | 35.0% | |
| ! | TGTTTTACTTGACCAATGTC+AGG | - | chr5_2:60333948-60333967 | None:intergenic | 35.0% |
| ! | GATGGTTCACAAAGCACTAA+TGG | + | chr5_2:60332472-60332491 | Msa0779180:CDS | 40.0% |
| TCTCCTACTCTATGCAGAAA+AGG | + | chr5_2:60332523-60332542 | Msa0779180:CDS | 40.0% | |
| CTCCTACTCTATGCAGAAAA+GGG | + | chr5_2:60332524-60332543 | Msa0779180:CDS | 40.0% | |
| ! | TTCCCTTTTCTGCATAGAGT+AGG | - | chr5_2:60332529-60332548 | None:intergenic | 40.0% |
| !! | TGCTTAGTTTTCAGCAGAGT+TGG | + | chr5_2:60332650-60332669 | Msa0779180:CDS | 40.0% |
| ! | TAGTTTTCAGCAGAGTTGGA+TGG | + | chr5_2:60332654-60332673 | Msa0779180:CDS | 40.0% |
| GAAACTTCAAGTGGTAGCTA+TGG | + | chr5_2:60332769-60332788 | Msa0779180:CDS | 40.0% | |
| ATGGTGAAAGTTCATGTGGA+TGG | + | chr5_2:60332824-60332843 | Msa0779180:CDS | 40.0% | |
| TCGTCATCACAAGGAACATT+TGG | - | chr5_2:60332862-60332881 | None:intergenic | 40.0% | |
| AGAAGATCGCTTCTTCAAGA+CGG | - | chr5_2:60332929-60332948 | None:intergenic | 40.0% | |
| CTTGAAGAAGCGATCTTCTA+TGG | + | chr5_2:60332930-60332949 | Msa0779180:CDS | 40.0% | |
| GGCGAATACAACCTCAATTA+CGG | + | chr5_2:60333080-60333099 | Msa0779180:intron | 40.0% | |
| TCACAACACAACCGTAATTG+AGG | - | chr5_2:60333094-60333113 | None:intergenic | 40.0% | |
| TTACGGTTGTGTTGTGATCA+CGG | + | chr5_2:60333097-60333116 | Msa0779180:intron | 40.0% | |
| ! | CTTGTGTTTGAAGCAAACCT+TGG | - | chr5_2:60333379-60333398 | None:intergenic | 40.0% |
| GAAGAGAGAGAATAAGTGAG+AGG | + | chr5_2:60333478-60333497 | Msa0779180:CDS | 40.0% | |
| CATTTGGCACAAGTTCTTGT+AGG | - | chr5_2:60333512-60333531 | None:intergenic | 40.0% | |
| CTACAAGAACTTGTGCCAAA+TGG | + | chr5_2:60333510-60333529 | Msa0779180:CDS | 40.0% | |
| !! | GGTTGATTTGGTTACCATGT+TGG | + | chr5_2:60333671-60333690 | Msa0779180:intron | 40.0% |
| GCTAATTGCTTTCTCCAACA+TGG | - | chr5_2:60333688-60333707 | None:intergenic | 40.0% | |
| GTTTCTTCAGTTGCAAGTGA+AGG | + | chr5_2:60333716-60333735 | Msa0779180:intron | 40.0% | |
| TTTGTTCATGGTGTAGGTGT+TGG | + | chr5_2:60333884-60333903 | Msa0779180:intron | 40.0% | |
| ! | TGTTGGCAGCTGATGAATTT+TGG | + | chr5_2:60333901-60333920 | Msa0779180:CDS | 40.0% |
| !! | GATGAATTTTGGCCTGTCAA+TGG | + | chr5_2:60333912-60333931 | Msa0779180:CDS | 40.0% |
| ! | GATGGTTCACAAAGCACTAA+TGG | + | chr5_2:60332472-60332491 | Msa0779180:CDS | 40.0% |
| TCTCCTACTCTATGCAGAAA+AGG | + | chr5_2:60332523-60332542 | Msa0779180:CDS | 40.0% | |
| CTCCTACTCTATGCAGAAAA+GGG | + | chr5_2:60332524-60332543 | Msa0779180:CDS | 40.0% | |
| ! | TTCCCTTTTCTGCATAGAGT+AGG | - | chr5_2:60332529-60332548 | None:intergenic | 40.0% |
| !! | TGCTTAGTTTTCAGCAGAGT+TGG | + | chr5_2:60332650-60332669 | Msa0779180:CDS | 40.0% |
| ! | TAGTTTTCAGCAGAGTTGGA+TGG | + | chr5_2:60332654-60332673 | Msa0779180:CDS | 40.0% |
| GAAACTTCAAGTGGTAGCTA+TGG | + | chr5_2:60332769-60332788 | Msa0779180:CDS | 40.0% | |
| ATGGTGAAAGTTCATGTGGA+TGG | + | chr5_2:60332824-60332843 | Msa0779180:CDS | 40.0% | |
| TCGTCATCACAAGGAACATT+TGG | - | chr5_2:60332862-60332881 | None:intergenic | 40.0% | |
| AGAAGATCGCTTCTTCAAGA+CGG | - | chr5_2:60332929-60332948 | None:intergenic | 40.0% | |
| CTTGAAGAAGCGATCTTCTA+TGG | + | chr5_2:60332930-60332949 | Msa0779180:CDS | 40.0% | |
| GGCGAATACAACCTCAATTA+CGG | + | chr5_2:60333080-60333099 | Msa0779180:intron | 40.0% | |
| TCACAACACAACCGTAATTG+AGG | - | chr5_2:60333094-60333113 | None:intergenic | 40.0% | |
| TTACGGTTGTGTTGTGATCA+CGG | + | chr5_2:60333097-60333116 | Msa0779180:intron | 40.0% | |
| ! | CTTGTGTTTGAAGCAAACCT+TGG | - | chr5_2:60333379-60333398 | None:intergenic | 40.0% |
| GAAGAGAGAGAATAAGTGAG+AGG | + | chr5_2:60333478-60333497 | Msa0779180:CDS | 40.0% | |
| CATTTGGCACAAGTTCTTGT+AGG | - | chr5_2:60333512-60333531 | None:intergenic | 40.0% | |
| CTACAAGAACTTGTGCCAAA+TGG | + | chr5_2:60333510-60333529 | Msa0779180:CDS | 40.0% | |
| !! | GGTTGATTTGGTTACCATGT+TGG | + | chr5_2:60333671-60333690 | Msa0779180:intron | 40.0% |
| GCTAATTGCTTTCTCCAACA+TGG | - | chr5_2:60333688-60333707 | None:intergenic | 40.0% | |
| GTTTCTTCAGTTGCAAGTGA+AGG | + | chr5_2:60333716-60333735 | Msa0779180:intron | 40.0% | |
| TTTGTTCATGGTGTAGGTGT+TGG | + | chr5_2:60333884-60333903 | Msa0779180:intron | 40.0% | |
| ! | TGTTGGCAGCTGATGAATTT+TGG | + | chr5_2:60333901-60333920 | Msa0779180:CDS | 40.0% |
| !! | GATGAATTTTGGCCTGTCAA+TGG | + | chr5_2:60333912-60333931 | Msa0779180:CDS | 40.0% |
| TGCACATAGTTGCGGTCAAA+TGG | + | chr5_2:60333057-60333076 | Msa0779180:intron | 45.0% | |
| GCACATAGTTGCGGTCAAAT+GGG | + | chr5_2:60333058-60333077 | Msa0779180:intron | 45.0% | |
| CACATAGTTGCGGTCAAATG+GGG | + | chr5_2:60333059-60333078 | Msa0779180:intron | 45.0% | |
| ! | TGATGTTTCTGTCGTGATCG+CGG | + | chr5_2:60333135-60333154 | Msa0779180:intron | 45.0% |
| TTCTTACTTGCAGCTGTGCA+TGG | - | chr5_2:60333309-60333328 | None:intergenic | 45.0% | |
| ! | ACACTTTGAGGATCCTTGGA+TGG | - | chr5_2:60333351-60333370 | None:intergenic | 45.0% |
| ! | AGCAACACTTTGAGGATCCT+TGG | - | chr5_2:60333355-60333374 | None:intergenic | 45.0% |
| ACTTGTGCCAAATGGTTCCA+AGG | + | chr5_2:60333518-60333537 | Msa0779180:CDS | 45.0% | |
| !! | GAATTTTGGCCTGTCAATGG+TGG | + | chr5_2:60333915-60333934 | Msa0779180:CDS | 45.0% |
| TGCACATAGTTGCGGTCAAA+TGG | + | chr5_2:60333057-60333076 | Msa0779180:intron | 45.0% | |
| GCACATAGTTGCGGTCAAAT+GGG | + | chr5_2:60333058-60333077 | Msa0779180:intron | 45.0% | |
| CACATAGTTGCGGTCAAATG+GGG | + | chr5_2:60333059-60333078 | Msa0779180:intron | 45.0% | |
| ! | TGATGTTTCTGTCGTGATCG+CGG | + | chr5_2:60333135-60333154 | Msa0779180:intron | 45.0% |
| TTCTTACTTGCAGCTGTGCA+TGG | - | chr5_2:60333309-60333328 | None:intergenic | 45.0% | |
| ! | ACACTTTGAGGATCCTTGGA+TGG | - | chr5_2:60333351-60333370 | None:intergenic | 45.0% |
| ! | AGCAACACTTTGAGGATCCT+TGG | - | chr5_2:60333355-60333374 | None:intergenic | 45.0% |
| ACTTGTGCCAAATGGTTCCA+AGG | + | chr5_2:60333518-60333537 | Msa0779180:CDS | 45.0% | |
| !! | GAATTTTGGCCTGTCAATGG+TGG | + | chr5_2:60333915-60333934 | Msa0779180:CDS | 45.0% |
| !! | AAAAAAGTTAATAAAATTAA+CGG | - | chr5_2:60333168-60333187 | None:intergenic | 5.0% |
| !! | AAAAAAGTTAATAAAATTAA+CGG | - | chr5_2:60333168-60333187 | None:intergenic | 5.0% |
| TCATCGTCGTCGTCATCACA+AGG | - | chr5_2:60332871-60332890 | None:intergenic | 50.0% | |
| TGTGCATGGCTTCTTGGCAT+TGG | - | chr5_2:60333295-60333314 | None:intergenic | 50.0% | |
| !! | TCCTCAAAGTGTTGCTGCCA+AGG | + | chr5_2:60333359-60333378 | Msa0779180:CDS | 50.0% |
| ACCTTGGCAGCAACACTTTG+AGG | - | chr5_2:60333363-60333382 | None:intergenic | 50.0% | |
| ! | GGAGCTTTTCCACCATTGAC+AGG | - | chr5_2:60333927-60333946 | None:intergenic | 50.0% |
| GGTGGAAAAGCTCCTGACAT+TGG | + | chr5_2:60333933-60333952 | Msa0779180:CDS | 50.0% | |
| TCATCGTCGTCGTCATCACA+AGG | - | chr5_2:60332871-60332890 | None:intergenic | 50.0% | |
| TGTGCATGGCTTCTTGGCAT+TGG | - | chr5_2:60333295-60333314 | None:intergenic | 50.0% | |
| !! | TCCTCAAAGTGTTGCTGCCA+AGG | + | chr5_2:60333359-60333378 | Msa0779180:CDS | 50.0% |
| ACCTTGGCAGCAACACTTTG+AGG | - | chr5_2:60333363-60333382 | None:intergenic | 50.0% | |
| ! | GGAGCTTTTCCACCATTGAC+AGG | - | chr5_2:60333927-60333946 | None:intergenic | 50.0% |
| GGTGGAAAAGCTCCTGACAT+TGG | + | chr5_2:60333933-60333952 | Msa0779180:CDS | 50.0% | |
| !! | CATGGCTTCTTGGCATTGGC+AGG | - | chr5_2:60333291-60333310 | None:intergenic | 55.0% |
| TGCAGCTGTGCATGGCTTCT+TGG | - | chr5_2:60333301-60333320 | None:intergenic | 55.0% | |
| !! | CATGGCTTCTTGGCATTGGC+AGG | - | chr5_2:60333291-60333310 | None:intergenic | 55.0% |
| TGCAGCTGTGCATGGCTTCT+TGG | - | chr5_2:60333301-60333320 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 60332340 | 60334001 | 60332340 | ID=Msa0779180;Name=Msa0779180 |
| chr5_2 | mRNA | 60332340 | 60334001 | 60332340 | ID=Msa0779180-mRNA-1;Parent=Msa0779180;Name=Msa0779180-mRNA-1;_AED=0.15;_eAED=0.17;_QI=0|0|0|1|1|1|5|0|315 |
| chr5_2 | exon | 60332340 | 60332951 | 60332340 | ID=Msa0779180-mRNA-1:exon:17634;Parent=Msa0779180-mRNA-1 |
| chr5_2 | exon | 60333273 | 60333380 | 60333273 | ID=Msa0779180-mRNA-1:exon:17635;Parent=Msa0779180-mRNA-1 |
| chr5_2 | exon | 60333474 | 60333539 | 60333474 | ID=Msa0779180-mRNA-1:exon:17636;Parent=Msa0779180-mRNA-1 |
| chr5_2 | exon | 60333672 | 60333731 | 60333672 | ID=Msa0779180-mRNA-1:exon:17637;Parent=Msa0779180-mRNA-1 |
| chr5_2 | exon | 60333900 | 60334001 | 60333900 | ID=Msa0779180-mRNA-1:exon:17638;Parent=Msa0779180-mRNA-1 |
| chr5_2 | CDS | 60332340 | 60332951 | 60332340 | ID=Msa0779180-mRNA-1:cds;Parent=Msa0779180-mRNA-1 |
| chr5_2 | CDS | 60333273 | 60333380 | 60333273 | ID=Msa0779180-mRNA-1:cds;Parent=Msa0779180-mRNA-1 |
| chr5_2 | CDS | 60333474 | 60333539 | 60333474 | ID=Msa0779180-mRNA-1:cds;Parent=Msa0779180-mRNA-1 |
| chr5_2 | CDS | 60333672 | 60333731 | 60333672 | ID=Msa0779180-mRNA-1:cds;Parent=Msa0779180-mRNA-1 |
| chr5_2 | CDS | 60333900 | 60334001 | 60333900 | ID=Msa0779180-mRNA-1:cds;Parent=Msa0779180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
