Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0781010 | sp|Q14919|NC2A_HUMAN | 41.463 | 164 | 70 | 3 | 2 | 165 | 5 | 142 | 9.50e-32 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0781010 | A0A072UGZ0 | 91.409 | 291 | 19 | 3 | 1 | 286 | 1 | 290 | 2.29e-160 | 457 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0781010 | TF | NF-YC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0781010 | MtrunA17_Chr5g0441241 | 87.956 | 274 | 27 | 3 | 18 | 286 | 1 | 273 | 8.54e-151 | 423 |
| Msa0781010 | MtrunA17_Chr3g0081161 | 49.329 | 298 | 122 | 9 | 1 | 287 | 1 | 280 | 5.66e-78 | 239 |
| Msa0781010 | MtrunA17_Chr8g0354151 | 44.337 | 309 | 135 | 6 | 1 | 287 | 1 | 294 | 1.57e-74 | 230 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0781010 | AT3G12480.1 | 69.925 | 133 | 34 | 1 | 1 | 127 | 1 | 133 | 1.02e-58 | 190 |
| Msa0781010 | AT5G19490.1 | 43.667 | 300 | 125 | 8 | 1 | 297 | 1 | 259 | 2.99e-58 | 188 |
Find 81 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTAACTTCCTCGATTTC+CGG | 0.228284 | 5_2:+63247500 | None:intergenic |
| AACTAGCCAACTTAAGTAAA+AGG | 0.241392 | 5_2:-63247208 | Msa0781010:CDS |
| AACGTTGTTGTTTAGGAGTT+TGG | 0.260945 | 5_2:+63250303 | None:intergenic |
| GTGAGCAAAGTTCCTGATTT+AGG | 0.300821 | 5_2:-63248372 | Msa0781010:CDS |
| TAGTCAGTACCTTCATTTAG+AGG | 0.303078 | 5_2:-63247002 | Msa0781010:three_prime_UTR |
| GGAAGGGGCGGTAGGGGTAG+AGG | 0.322327 | 5_2:-63247647 | Msa0781010:CDS |
| AGTGTTAGACAAATCCTTAT+TGG | 0.327540 | 5_2:-63247045 | Msa0781010:three_prime_UTR |
| GCTTAACTTCCTCGATTTCC+GGG | 0.330124 | 5_2:+63247501 | None:intergenic |
| ATGCAAGCTGATGAAGATAT+AGG | 0.348420 | 5_2:-63248806 | Msa0781010:CDS |
| TTGGTTTAACGTTGTTGTTT+AGG | 0.350161 | 5_2:+63250296 | None:intergenic |
| TTATGACTTCTCACATATAT+AGG | 0.351806 | 5_2:-63247126 | Msa0781010:three_prime_UTR |
| AGGGGTAGAGGCAGGGGTCG+TGG | 0.362105 | 5_2:-63247635 | Msa0781010:CDS |
| ACTTAAGTTGGCTAGTTGTA+AGG | 0.372538 | 5_2:+63247214 | None:intergenic |
| GGAGACCAAGAGAAGTAAAA+TGG | 0.382690 | 5_2:-63248187 | Msa0781010:intron |
| TAGACAAATCCTTATTGGTT+AGG | 0.392591 | 5_2:-63247040 | Msa0781010:three_prime_UTR |
| TCAATGCCTCCTAACCAATA+AGG | 0.394814 | 5_2:+63247031 | None:intergenic |
| TAAAAGGATTGATGAAGATA+TGG | 0.395167 | 5_2:-63247192 | Msa0781010:CDS |
| GGGGCGGTAGGGGTAGAGGC+AGG | 0.396184 | 5_2:-63247643 | Msa0781010:CDS |
| TTTCGATTTAAATCTGAATC+CGG | 0.397431 | 5_2:-63247399 | Msa0781010:CDS |
| TGCAAGCTGATGAAGATATA+GGG | 0.408049 | 5_2:-63248805 | Msa0781010:CDS |
| AGAGGCAGGGGTCGTGGCCG+CGG | 0.410518 | 5_2:-63247629 | Msa0781010:CDS |
| GGCGGTAGGGGTAGAGGCAG+GGG | 0.411291 | 5_2:-63247641 | Msa0781010:CDS |
| AGGGGTCGTGGCCGCGGCCA+TGG | 0.415201 | 5_2:-63247623 | Msa0781010:CDS |
| GCAGCAGAACCGCCTAAATC+AGG | 0.433277 | 5_2:+63248360 | None:intergenic |
| GAACAATGCTTAACTTCCTC+AGG | 0.444484 | 5_2:+63247458 | None:intergenic |
| TCCATGTCGTCATCCGGATC+CGG | 0.447116 | 5_2:+63247380 | None:intergenic |
| ACTTCCTCAGGTTCTTTGAC+TGG | 0.454445 | 5_2:+63247470 | None:intergenic |
| TTTCGAACTACCACTTCAGC+TGG | 0.460443 | 5_2:+63247422 | None:intergenic |
| TTAGGCGGTTCTGCTGCAAC+TGG | 0.479475 | 5_2:-63248354 | Msa0781010:CDS |
| CTTAAGTTGGCTAGTTGTAA+GGG | 0.481167 | 5_2:+63247215 | None:intergenic |
| ATTTCATCCATGTCGTCATC+CGG | 0.486479 | 5_2:+63247374 | None:intergenic |
| ACAAATCCTTATTGGTTAGG+AGG | 0.487491 | 5_2:-63247037 | Msa0781010:three_prime_UTR |
| ACCAGTGGAAGGGGCGGTAG+GGG | 0.488619 | 5_2:-63247653 | Msa0781010:CDS |
| ACCTCCTCTTATTGACAGCT+TGG | 0.490413 | 5_2:+63248325 | None:intergenic |
| TTACAAATGAAAAGCATTCA+CGG | 0.491312 | 5_2:+63248550 | None:intergenic |
| ATACCAGTGGAAGGGGCGGT+AGG | 0.493238 | 5_2:-63247655 | Msa0781010:CDS |
| TACCAGTGGAAGGGGCGGTA+GGG | 0.494206 | 5_2:-63247654 | Msa0781010:CDS |
| GAAGATGAACCGGATGGGAT+AGG | 0.503037 | 5_2:+63247338 | None:intergenic |
| ACCCCTACCGCCCCTTCCAC+TGG | 0.506809 | 5_2:+63247652 | None:intergenic |
| TTTAAATCTGAATCCGGATC+CGG | 0.510680 | 5_2:-63247393 | Msa0781010:CDS |
| GGGCGGTAGGGGTAGAGGCA+GGG | 0.515614 | 5_2:-63247642 | Msa0781010:CDS |
| CATGCGCATACCAGTGGAAG+GGG | 0.522977 | 5_2:-63247662 | Msa0781010:CDS |
| CACTCAAAATAATGTAAGCC+CGG | 0.532719 | 5_2:-63247519 | Msa0781010:CDS |
| ACGACCAAGCTGTCAATAAG+AGG | 0.533342 | 5_2:-63248329 | Msa0781010:CDS |
| TCCGGATCCGGATGACGACA+TGG | 0.537250 | 5_2:-63247381 | Msa0781010:CDS |
| GACTACTTACAAACTAGAAG+AGG | 0.544073 | 5_2:+63248764 | None:intergenic |
| TGTGAAGCATTGAAGCAAAA+CGG | 0.548283 | 5_2:-63247548 | Msa0781010:CDS |
| AATTTCAGAAGAGAAGATTG+AGG | 0.553548 | 5_2:-63247285 | Msa0781010:CDS |
| CATACGAGATAACACTTAGG+AGG | 0.553719 | 5_2:-63248583 | Msa0781010:CDS |
| TAATCATTAGAAAGTTCTGA+TGG | 0.554324 | 5_2:-63247102 | Msa0781010:three_prime_UTR |
| GAACCGGATGGGATAGGAGT+TGG | 0.555156 | 5_2:+63247344 | None:intergenic |
| GAGAAGATTGAGGAATACCC+TGG | 0.559641 | 5_2:-63247275 | Msa0781010:CDS |
| TCTACTGAGCCTCTAAATGA+AGG | 0.562344 | 5_2:+63246993 | None:intergenic |
| ATATCAGAAAAGGACCATCC+AGG | 0.563775 | 5_2:+63247257 | None:intergenic |
| GGAAGTTAAGCATTGTTCAC+CGG | 0.563902 | 5_2:-63247453 | Msa0781010:CDS |
| ACACCAACTCCTATCCCATC+CGG | 0.568917 | 5_2:-63247347 | Msa0781010:CDS |
| TTCTTCACAACAACAACATG+AGG | 0.578374 | 5_2:-63250173 | Msa0781010:exon |
| AACATGCGCATACCAGTGGA+AGG | 0.579451 | 5_2:-63247664 | Msa0781010:CDS |
| TAATGTAAGCCCGGAAATCG+AGG | 0.583882 | 5_2:-63247510 | Msa0781010:CDS |
| GGTAAGAAAACCAGCTGAAG+TGG | 0.584865 | 5_2:-63247432 | Msa0781010:CDS |
| TATCAGAAAAGGACCATCCA+GGG | 0.585690 | 5_2:+63247258 | None:intergenic |
| ATACGAGATAACACTTAGGA+GGG | 0.600468 | 5_2:-63248582 | Msa0781010:CDS |
| AGATATAGGGAAGATTGCAT+TGG | 0.616410 | 5_2:-63248792 | Msa0781010:CDS |
| TGTTGTTGTGAAGAAGAAGA+TGG | 0.620292 | 5_2:+63250181 | None:intergenic |
| TTGAAGAAGACGAAGAGGGA+AGG | 0.620409 | 5_2:+63250249 | None:intergenic |
| AGCAAAGTTCCTGATTTAGG+CGG | 0.623500 | 5_2:-63248369 | Msa0781010:CDS |
| ACGCGTTGAAGAAGACGAAG+AGG | 0.626457 | 5_2:+63250244 | None:intergenic |
| TTCCCCTTTATAAAACCACA+AGG | 0.629555 | 5_2:-63250215 | Msa0781010:five_prime_UTR |
| CGAGAACATGCGCATACCAG+TGG | 0.633781 | 5_2:-63247668 | Msa0781010:CDS |
| GGATGGGATAGGAGTTGGTG+TGG | 0.637023 | 5_2:+63247349 | None:intergenic |
| GCGCATACCAGTGGAAGGGG+CGG | 0.637896 | 5_2:-63247659 | Msa0781010:CDS |
| GAACATACGAGATAACACTT+AGG | 0.637954 | 5_2:-63248586 | Msa0781010:CDS |
| ACATGCGCATACCAGTGGAA+GGG | 0.649450 | 5_2:-63247663 | Msa0781010:CDS |
| CGCGTTGAAGAAGACGAAGA+GGG | 0.650949 | 5_2:+63250245 | None:intergenic |
| AGATTGAGGAATACCCTGGA+TGG | 0.653139 | 5_2:-63247271 | Msa0781010:CDS |
| TTCACCAGTCAAAGAACCTG+AGG | 0.656260 | 5_2:-63247474 | Msa0781010:CDS |
| ACCAAGCTGTCAATAAGAGG+AGG | 0.667672 | 5_2:-63248326 | Msa0781010:intron |
| CTTACAAACTAGAAGAGGCA+CGG | 0.671946 | 5_2:+63248769 | None:intergenic |
| TACGAGATAACACTTAGGAG+GGG | 0.675136 | 5_2:-63248581 | Msa0781010:CDS |
| TGACGATGATGACAGCGATG+AGG | 0.685240 | 5_2:-63248208 | Msa0781010:CDS |
| ATGGTGAAGACAAAACCTTG+TGG | 0.755545 | 5_2:+63250200 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGTAAAAAAAAATGTTAAA+AGG | + | chr5_2:63248157-63248176 | None:intergenic | 10.0% |
| !!! | TTAAGATTTTGTAAAGATTT+TGG | + | chr5_2:63246979-63246998 | None:intergenic | 15.0% |
| !!! | TTTTCTGTTTTTGTTTTATT+GGG | - | chr5_2:63247213-63247232 | Msa0781010:CDS | 15.0% |
| !! | TCCTTTATTAAAATTTGATA+TGG | - | chr5_2:63247701-63247720 | Msa0781010:intron | 15.0% |
| !!! | ACCATATCAAATTTTAATAA+AGG | + | chr5_2:63247705-63247724 | None:intergenic | 15.0% |
| !! | GTTTCAAAAAACAAAAAATA+GGG | + | chr5_2:63248521-63248540 | None:intergenic | 15.0% |
| !! | TGTTTCAAAAAACAAAAAAT+AGG | + | chr5_2:63248522-63248541 | None:intergenic | 15.0% |
| !!! | TGATTTGTATTTTGTATATT+AGG | - | chr5_2:63249003-63249022 | Msa0781010:intron | 15.0% |
| !!! | AATCACTTAAATCAATTTTT+TGG | + | chr5_2:63249406-63249425 | None:intergenic | 15.0% |
| !!! | AAAATTGATTTAAGTGATTA+TGG | - | chr5_2:63249407-63249426 | Msa0781010:intron | 15.0% |
| !!! | ACAATTAGAAAAGATTTTTT+AGG | - | chr5_2:63250169-63250188 | Msa0781010:exon | 15.0% |
| !!! | ATTTTGTAAAGATTTTGGTT+TGG | + | chr5_2:63246974-63246993 | None:intergenic | 20.0% |
| !!! | GTTTTCTGTTTTTGTTTTAT+TGG | - | chr5_2:63247212-63247231 | Msa0781010:CDS | 20.0% |
| !! | TCCTTATTATTACTATCATT+AGG | - | chr5_2:63247246-63247265 | Msa0781010:CDS | 20.0% |
| !! | ACCTAATGATAGTAATAATA+AGG | + | chr5_2:63247250-63247269 | None:intergenic | 20.0% |
| !!! | ATCATTAGGTTTATTTTTGT+TGG | - | chr5_2:63247260-63247279 | Msa0781010:CDS | 20.0% |
| !!! | TCATTAGGTTTATTTTTGTT+GGG | - | chr5_2:63247261-63247280 | Msa0781010:CDS | 20.0% |
| !!! | TATTTTGATTATATGGATGA+TGG | - | chr5_2:63247290-63247309 | Msa0781010:CDS | 20.0% |
| !!! | ATTTTGATTATATGGATGAT+GGG | - | chr5_2:63247291-63247310 | Msa0781010:CDS | 20.0% |
| !! | AAATCTTCTTTACCATAAAT+GGG | - | chr5_2:63247810-63247829 | Msa0781010:intron | 20.0% |
| !! | AAACAAATATTTCCAAACAA+AGG | + | chr5_2:63247871-63247890 | None:intergenic | 20.0% |
| !!! | TGTATTGTAATTTGTAAACA+GGG | - | chr5_2:63247985-63248004 | Msa0781010:intron | 20.0% |
| !! | GATATAGAACAAATATAACA+TGG | + | chr5_2:63248761-63248780 | None:intergenic | 20.0% |
| !! | TTGTACAAAATGTTGTTAAA+TGG | + | chr5_2:63249260-63249279 | None:intergenic | 20.0% |
| !!! | AAACCTTGTGGTTTTATAAA+GGG | + | chr5_2:63247039-63247058 | None:intergenic | 25.0% |
| !!! | AAAACCTTGTGGTTTTATAA+AGG | + | chr5_2:63247040-63247059 | None:intergenic | 25.0% |
| !!! | CATTAGGTTTATTTTTGTTG+GGG | - | chr5_2:63247262-63247281 | Msa0781010:CDS | 25.0% |
| !!! | GGTTGGTTATTTTGATTATA+TGG | - | chr5_2:63247283-63247302 | Msa0781010:CDS | 25.0% |
| ! | TGAGCAAAACAATAACATTA+GGG | + | chr5_2:63247602-63247621 | None:intergenic | 25.0% |
| ! | ATGAGCAAAACAATAACATT+AGG | + | chr5_2:63247603-63247622 | None:intergenic | 25.0% |
| !!! | TGGGAAATAAGATTTGTTTT+TGG | - | chr5_2:63247664-63247683 | Msa0781010:CDS | 25.0% |
| ! | GAAATCTTCTTTACCATAAA+TGG | - | chr5_2:63247809-63247828 | Msa0781010:intron | 25.0% |
| !! | CTGTATTGTAATTTGTAAAC+AGG | - | chr5_2:63247984-63248003 | Msa0781010:intron | 25.0% |
| ! | ATGATCAATGATATCAATAG+TGG | - | chr5_2:63248041-63248060 | Msa0781010:intron | 25.0% |
| !! | TATTTCACATAGCGTATTTT+TGG | + | chr5_2:63248088-63248107 | None:intergenic | 25.0% |
| ! | AAATGTTAAAAGGACAAAAC+TGG | + | chr5_2:63248147-63248166 | None:intergenic | 25.0% |
| !!! | TCTTTTCACCATTCATTTTT+TGG | - | chr5_2:63248192-63248211 | Msa0781010:CDS | 25.0% |
| ! | AATGAGTGAGAATTCAATAA+TGG | + | chr5_2:63248324-63248343 | None:intergenic | 25.0% |
| ! | TTGCATAATTGATTATTGAC+AGG | - | chr5_2:63248402-63248421 | Msa0781010:CDS | 25.0% |
| !!! | ATTTTTTTGTACTGTGCTTT+TGG | - | chr5_2:63248544-63248563 | Msa0781010:intron | 25.0% |
| !!! | TTACAAATGAAAAGCATTCA+CGG | + | chr5_2:63248701-63248720 | None:intergenic | 25.0% |
| !! | TAGTTTATCTGTATTGCTTT+TGG | - | chr5_2:63248734-63248753 | Msa0781010:intron | 25.0% |
| !! | AATTACCATTTTACTTCTCT+TGG | + | chr5_2:63249069-63249088 | None:intergenic | 25.0% |
| ! | CAAAAAACAAATATGCAAAG+TGG | + | chr5_2:63249148-63249167 | None:intergenic | 25.0% |
| ! | CGGATTGAAAAAGAAAATAA+CGG | - | chr5_2:63249185-63249204 | Msa0781010:intron | 25.0% |
| !! | TTGTACAAAATCATGTTTTG+CGG | - | chr5_2:63249272-63249291 | Msa0781010:intron | 25.0% |
| ! | ATAAAAATACTGTCAGATAG+CGG | + | chr5_2:63249372-63249391 | None:intergenic | 25.0% |
| ! | TTTCGATTTAAATCTGAATC+CGG | - | chr5_2:63249849-63249868 | Msa0781010:intron | 25.0% |
| !!! | CATTTTTTCCATATCAGAAA+AGG | + | chr5_2:63250004-63250023 | None:intergenic | 25.0% |
| !! | CTTTTCTGATATGGAAAAAA+TGG | - | chr5_2:63250002-63250021 | Msa0781010:intron | 25.0% |
| !! | ATCAATCCTTTTACTTAAGT+TGG | + | chr5_2:63250049-63250068 | None:intergenic | 25.0% |
| ! | TAAAAGGATTGATGAAGATA+TGG | - | chr5_2:63250056-63250075 | Msa0781010:intron | 25.0% |
| ! | TTATGACTTCTCACATATAT+AGG | - | chr5_2:63250122-63250141 | Msa0781010:intron | 25.0% |
| !! | TAATCATTAGAAAGTTCTGA+TGG | - | chr5_2:63250146-63250165 | Msa0781010:CDS | 25.0% |
| !! | TTGGTTTAACGTTGTTGTTT+AGG | + | chr5_2:63246955-63246974 | None:intergenic | 30.0% |
| !!! | AACCTTGTGGTTTTATAAAG+GGG | + | chr5_2:63247038-63247057 | None:intergenic | 30.0% |
| GACAAGAAAAAAAACCGAAA+GGG | + | chr5_2:63247152-63247171 | None:intergenic | 30.0% | |
| ! | AAAAACAACCTTTTCAACGA+GGG | + | chr5_2:63247174-63247193 | None:intergenic | 30.0% |
| ! | AAAAAACAACCTTTTCAACG+AGG | + | chr5_2:63247175-63247194 | None:intergenic | 30.0% |
| TACTTGCTTAATATTGATGC+CGG | - | chr5_2:63247363-63247382 | Msa0781010:CDS | 30.0% | |
| GGATAAAATAACTCTGTTGT+GGG | - | chr5_2:63247386-63247405 | Msa0781010:CDS | 30.0% | |
| GATAAAATAACTCTGTTGTG+GGG | - | chr5_2:63247387-63247406 | Msa0781010:CDS | 30.0% | |
| ATAAAATAACTCTGTTGTGG+GGG | - | chr5_2:63247388-63247407 | Msa0781010:CDS | 30.0% | |
| AACATTAGGGTACATAGTAA+GGG | + | chr5_2:63247589-63247608 | None:intergenic | 30.0% | |
| TAACATTAGGGTACATAGTA+AGG | + | chr5_2:63247590-63247609 | None:intergenic | 30.0% | |
| AACTGTACTACACAATTTGT+CGG | + | chr5_2:63247754-63247773 | None:intergenic | 30.0% | |
| CAAATTGTGTAGTACAGTTA+CGG | - | chr5_2:63247755-63247774 | Msa0781010:intron | 30.0% | |
| AACAGATGCCAAAAAATGAA+TGG | + | chr5_2:63248203-63248222 | None:intergenic | 30.0% | |
| CATCTGTTAGAAATCTGTTT+GGG | - | chr5_2:63248215-63248234 | Msa0781010:CDS | 30.0% | |
| CAAGAAGATAAACAGTCATT+TGG | + | chr5_2:63248355-63248374 | None:intergenic | 30.0% | |
| TAATTGATTATTGACAGGCT+AGG | - | chr5_2:63248407-63248426 | Msa0781010:CDS | 30.0% | |
| TTGTTCTATATCCTCTTTCT+TGG | - | chr5_2:63248769-63248788 | Msa0781010:intron | 30.0% | |
| AAAAGCTTTACATGTCTTCT+TGG | - | chr5_2:63248796-63248815 | Msa0781010:CDS | 30.0% | |
| !!! | TTTCTTTTTCAATCCGTGAT+AGG | + | chr5_2:63249181-63249200 | None:intergenic | 30.0% |
| ! | TCCACTATATTATAGCTCTA+TGG | - | chr5_2:63249317-63249336 | Msa0781010:intron | 30.0% |
| ! | AGCTATAACATAGTGGAATA+TGG | + | chr5_2:63249343-63249362 | None:intergenic | 30.0% |
| TGATTATGGAAGTTCACTAA+TGG | - | chr5_2:63249421-63249440 | Msa0781010:intron | 30.0% | |
| ! | AATGGCTTTTCTGCAATTTA+TGG | - | chr5_2:63249456-63249475 | Msa0781010:intron | 30.0% |
| CTCGGAAAAAAAAAATCAGT+TGG | + | chr5_2:63249495-63249514 | None:intergenic | 30.0% | |
| !! | AACTGATTTTGAAGATGAAC+CGG | + | chr5_2:63249923-63249942 | None:intergenic | 30.0% |
| AATTTCAGAAGAGAAGATTG+AGG | - | chr5_2:63249963-63249982 | Msa0781010:intron | 30.0% | |
| AACTAGCCAACTTAAGTAAA+AGG | - | chr5_2:63250040-63250059 | Msa0781010:intron | 30.0% | |
| AGTGTTAGACAAATCCTTAT+TGG | - | chr5_2:63250203-63250222 | Msa0781010:five_prime_UTR | 30.0% | |
| ! | TAGACAAATCCTTATTGGTT+AGG | - | chr5_2:63250208-63250227 | Msa0781010:five_prime_UTR | 30.0% |
| !! | AACGTTGTTGTTTAGGAGTT+TGG | + | chr5_2:63246948-63246967 | None:intergenic | 35.0% |
| TTCCCCTTTATAAAACCACA+AGG | - | chr5_2:63247033-63247052 | Msa0781010:three_prime_UTR | 35.0% | |
| TGTTGTTGTGAAGAAGAAGA+TGG | + | chr5_2:63247070-63247089 | None:intergenic | 35.0% | |
| TTCTTCACAACAACAACATG+AGG | - | chr5_2:63247075-63247094 | Msa0781010:three_prime_UTR | 35.0% | |
| AAAAACCGAAAGGGTAAACA+AGG | + | chr5_2:63247143-63247162 | None:intergenic | 35.0% | |
| GGACAAGAAAAAAAACCGAA+AGG | + | chr5_2:63247153-63247172 | None:intergenic | 35.0% | |
| !!! | AGGTTTATTTTTGTTGGGGT+TGG | - | chr5_2:63247266-63247285 | Msa0781010:CDS | 35.0% |
| ACTTGCTTAATATTGATGCC+GGG | - | chr5_2:63247364-63247383 | Msa0781010:CDS | 35.0% | |
| !! | CAACAGAGTTATTTTATCCC+CGG | + | chr5_2:63247385-63247404 | None:intergenic | 35.0% |
| GGGATAAAATAACTCTGTTG+TGG | - | chr5_2:63247385-63247404 | Msa0781010:CDS | 35.0% | |
| TAAAATAACTCTGTTGTGGG+GGG | - | chr5_2:63247389-63247408 | Msa0781010:CDS | 35.0% | |
| !! | CTATTTCGTTCAAAGTGTTG+AGG | - | chr5_2:63247516-63247535 | Msa0781010:CDS | 35.0% |
| ! | GTTTAAGGGGTAGTAGTTTT+TGG | - | chr5_2:63247557-63247576 | Msa0781010:CDS | 35.0% |
| !! | ATGCTCATAGATAGCTTTGT+GGG | - | chr5_2:63247645-63247664 | Msa0781010:CDS | 35.0% |
| ACTAAGCAAATGCCCATTTA+TGG | + | chr5_2:63247825-63247844 | None:intergenic | 35.0% | |
| TGCATTTACATGCCTTTGTT+TGG | - | chr5_2:63247856-63247875 | Msa0781010:intron | 35.0% | |
| AAGCATGTAGGTACTTCATA+AGG | + | chr5_2:63247895-63247914 | None:intergenic | 35.0% | |
| ! | ATGAAGTACCTACATGCTTT+CGG | - | chr5_2:63247896-63247915 | Msa0781010:intron | 35.0% |
| ! | AATTGAAACCGAAAGCATGT+AGG | + | chr5_2:63247907-63247926 | None:intergenic | 35.0% |
| TCGGTTTCAATTACCAATAG+CGG | - | chr5_2:63247915-63247934 | Msa0781010:intron | 35.0% | |
| TATGATACGTTGTCATAGGT+TGG | - | chr5_2:63247940-63247959 | Msa0781010:intron | 35.0% | |
| ACAGAAAACATGACCAAAAG+CGG | + | chr5_2:63247968-63247987 | None:intergenic | 35.0% | |
| !! | TAGTGGATTGCAGAAAATAG+CGG | - | chr5_2:63248058-63248077 | Msa0781010:intron | 35.0% |
| GCATCTGTTAGAAATCTGTT+TGG | - | chr5_2:63248214-63248233 | Msa0781010:CDS | 35.0% | |
| TAGAAATCTGTTTGGGAACA+TGG | - | chr5_2:63248222-63248241 | Msa0781010:CDS | 35.0% | |
| GACACAATCAAATTGCTAGT+TGG | + | chr5_2:63248281-63248300 | None:intergenic | 35.0% | |
| ATTGAATTCTCACTCATTGC+AGG | - | chr5_2:63248326-63248345 | Msa0781010:intron | 35.0% | |
| ATGCAAGCTGATGAAGATAT+AGG | - | chr5_2:63248442-63248461 | Msa0781010:intron | 35.0% | |
| TGCAAGCTGATGAAGATATA+GGG | - | chr5_2:63248443-63248462 | Msa0781010:intron | 35.0% | |
| AGATATAGGGAAGATTGCAT+TGG | - | chr5_2:63248456-63248475 | Msa0781010:intron | 35.0% | |
| GACTACTTACAAACTAGAAG+AGG | + | chr5_2:63248487-63248506 | None:intergenic | 35.0% | |
| GAACATACGAGATAACACTT+AGG | - | chr5_2:63248662-63248681 | Msa0781010:intron | 35.0% | |
| ATACGAGATAACACTTAGGA+GGG | - | chr5_2:63248666-63248685 | Msa0781010:intron | 35.0% | |
| !!! | AGCTTTTAGAACCAAGAAAG+AGG | + | chr5_2:63248783-63248802 | None:intergenic | 35.0% |
| CAGGAATATTACTCAGCAAA+AGG | + | chr5_2:63249115-63249134 | None:intergenic | 35.0% | |
| GCCATAGAGCTATAATATAG+TGG | + | chr5_2:63249321-63249340 | None:intergenic | 35.0% | |
| GCTATAGAGCTATAACATAG+TGG | + | chr5_2:63249350-63249369 | None:intergenic | 35.0% | |
| ! | TAATGGCTTGTGAATGCAAA+TGG | - | chr5_2:63249438-63249457 | Msa0781010:intron | 35.0% |
| !! | CAGCTGATAGCTATTTTACT+CGG | + | chr5_2:63249513-63249532 | None:intergenic | 35.0% |
| ! | GATCTACAGTTTTACTTCCA+TGG | + | chr5_2:63249645-63249664 | None:intergenic | 35.0% |
| !! | TGTGAAGCATTGAAGCAAAA+CGG | - | chr5_2:63249700-63249719 | Msa0781010:intron | 35.0% |
| !!! | GGCTTACATTATTTTGAGTG+TGG | + | chr5_2:63249729-63249748 | None:intergenic | 35.0% |
| CACTCAAAATAATGTAAGCC+CGG | - | chr5_2:63249729-63249748 | Msa0781010:intron | 35.0% | |
| TTTAAATCTGAATCCGGATC+CGG | - | chr5_2:63249855-63249874 | Msa0781010:intron | 35.0% | |
| !! | ATTTTGAAGATGAACCGGAT+GGG | + | chr5_2:63249918-63249937 | None:intergenic | 35.0% |
| !! | CTTAAGTTGGCTAGTTGTAA+GGG | + | chr5_2:63250036-63250055 | None:intergenic | 35.0% |
| !! | ACTTAAGTTGGCTAGTTGTA+AGG | + | chr5_2:63250037-63250056 | None:intergenic | 35.0% |
| ! | ACAAATCCTTATTGGTTAGG+AGG | - | chr5_2:63250211-63250230 | Msa0781010:five_prime_UTR | 35.0% |
| TAGTCAGTACCTTCATTTAG+AGG | - | chr5_2:63250246-63250265 | Msa0781010:five_prime_UTR | 35.0% | |
| ATGGTGAAGACAAAACCTTG+TGG | + | chr5_2:63247051-63247070 | None:intergenic | 40.0% | |
| AAAGGGTAAACAAGGAAAGG+TGG | + | chr5_2:63247135-63247154 | None:intergenic | 40.0% | |
| ! | CCTTTCCTTGTTTACCCTTT+CGG | - | chr5_2:63247135-63247154 | Msa0781010:three_prime_UTR | 40.0% |
| TTTCTTGTCCCTCGTTGAAA+AGG | - | chr5_2:63247163-63247182 | Msa0781010:exon | 40.0% | |
| !! | TATGGATGATGGGTTTCTCT+TGG | - | chr5_2:63247301-63247320 | Msa0781010:CDS | 40.0% |
| CTTGCTTAATATTGATGCCG+GGG | - | chr5_2:63247365-63247384 | Msa0781010:CDS | 40.0% | |
| !! | TTTCGTTCAAAGTGTTGAGG+AGG | - | chr5_2:63247519-63247538 | Msa0781010:CDS | 40.0% |
| TGCATAGCAACTTGGGTTTA+AGG | - | chr5_2:63247542-63247561 | Msa0781010:CDS | 40.0% | |
| GCATAGCAACTTGGGTTTAA+GGG | - | chr5_2:63247543-63247562 | Msa0781010:CDS | 40.0% | |
| CATAGCAACTTGGGTTTAAG+GGG | - | chr5_2:63247544-63247563 | Msa0781010:CDS | 40.0% | |
| ! | CATGCTCATAGATAGCTTTG+TGG | - | chr5_2:63247644-63247663 | Msa0781010:CDS | 40.0% |
| AACGTATCATATGCCGCTAT+TGG | + | chr5_2:63247931-63247950 | None:intergenic | 40.0% | |
| GGCATATGATACGTTGTCAT+AGG | - | chr5_2:63247936-63247955 | Msa0781010:intron | 40.0% | |
| TGAAATAGCAGACAGTTTCG+CGG | - | chr5_2:63248101-63248120 | Msa0781010:intron | 40.0% | |
| CTTACAAACTAGAAGAGGCA+CGG | + | chr5_2:63248482-63248501 | None:intergenic | 40.0% | |
| CATACGAGATAACACTTAGG+AGG | - | chr5_2:63248665-63248684 | Msa0781010:intron | 40.0% | |
| TACGAGATAACACTTAGGAG+GGG | - | chr5_2:63248667-63248686 | Msa0781010:intron | 40.0% | |
| GTGAGCAAAGTTCCTGATTT+AGG | - | chr5_2:63248876-63248895 | Msa0781010:intron | 40.0% | |
| AGCAAAGTTCCTGATTTAGG+CGG | - | chr5_2:63248879-63248898 | Msa0781010:intron | 40.0% | |
| GGAGACCAAGAGAAGTAAAA+TGG | - | chr5_2:63249061-63249080 | Msa0781010:intron | 40.0% | |
| AGCTTAACTTCCTCGATTTC+CGG | + | chr5_2:63249751-63249770 | None:intergenic | 40.0% | |
| GAACAATGCTTAACTTCCTC+AGG | + | chr5_2:63249793-63249812 | None:intergenic | 40.0% | |
| ! | GGAAGTTAAGCATTGTTCAC+CGG | - | chr5_2:63249795-63249814 | Msa0781010:intron | 40.0% |
| !!! | ACTTCAGCTGGTTTTCTTAC+CGG | + | chr5_2:63249817-63249836 | None:intergenic | 40.0% |
| ATTTCATCCATGTCGTCATC+CGG | + | chr5_2:63249877-63249896 | None:intergenic | 40.0% | |
| !! | GATTTTGAAGATGAACCGGA+TGG | + | chr5_2:63249919-63249938 | None:intergenic | 40.0% |
| TATCAGAAAAGGACCATCCA+GGG | + | chr5_2:63249993-63250012 | None:intergenic | 40.0% | |
| ATATCAGAAAAGGACCATCC+AGG | + | chr5_2:63249994-63250013 | None:intergenic | 40.0% | |
| ! | TGGATGGTCCTTTTCTGATA+TGG | - | chr5_2:63249993-63250012 | Msa0781010:intron | 40.0% |
| TCAATGCCTCCTAACCAATA+AGG | + | chr5_2:63250220-63250239 | None:intergenic | 40.0% | |
| TCTACTGAGCCTCTAAATGA+AGG | + | chr5_2:63250258-63250277 | None:intergenic | 40.0% | |
| TTGAAGAAGACGAAGAGGGA+AGG | + | chr5_2:63247002-63247021 | None:intergenic | 45.0% | |
| GAAAGGTGGAACTTACAGCA+GGG | + | chr5_2:63247121-63247140 | None:intergenic | 45.0% | |
| CCGAAAGGGTAAACAAGGAA+AGG | + | chr5_2:63247138-63247157 | None:intergenic | 45.0% | |
| GTACAGTTACGGTTCCTGAT+CGG | - | chr5_2:63247766-63247785 | Msa0781010:intron | 45.0% | |
| GAAATAGCAGACAGTTTCGC+GGG | - | chr5_2:63248102-63248121 | Msa0781010:intron | 45.0% | |
| ACGACCAAGCTGTCAATAAG+AGG | - | chr5_2:63248919-63248938 | Msa0781010:intron | 45.0% | |
| ACCAAGCTGTCAATAAGAGG+AGG | - | chr5_2:63248922-63248941 | Msa0781010:intron | 45.0% | |
| ACCTCCTCTTATTGACAGCT+TGG | + | chr5_2:63248926-63248945 | None:intergenic | 45.0% | |
| ACAGAACTCGCGCAAGAAAT+AGG | + | chr5_2:63248972-63248991 | None:intergenic | 45.0% | |
| ATATGCAAAGTGGTGTGCAG+TGG | + | chr5_2:63249138-63249157 | None:intergenic | 45.0% | |
| TTGTGCAGTGTTGCCTATCA+CGG | - | chr5_2:63249165-63249184 | Msa0781010:intron | 45.0% | |
| TAATGTAAGCCCGGAAATCG+AGG | - | chr5_2:63249738-63249757 | Msa0781010:intron | 45.0% | |
| GCTTAACTTCCTCGATTTCC+GGG | + | chr5_2:63249750-63249769 | None:intergenic | 45.0% | |
| TTCACCAGTCAAAGAACCTG+AGG | - | chr5_2:63249774-63249793 | Msa0781010:intron | 45.0% | |
| ACTTCCTCAGGTTCTTTGAC+TGG | + | chr5_2:63249781-63249800 | None:intergenic | 45.0% | |
| GGTAAGAAAACCAGCTGAAG+TGG | - | chr5_2:63249816-63249835 | Msa0781010:intron | 45.0% | |
| TTTCGAACTACCACTTCAGC+TGG | + | chr5_2:63249829-63249848 | None:intergenic | 45.0% | |
| GAGAAGATTGAGGAATACCC+TGG | - | chr5_2:63249973-63249992 | Msa0781010:intron | 45.0% | |
| AGATTGAGGAATACCCTGGA+TGG | - | chr5_2:63249977-63249996 | Msa0781010:intron | 45.0% | |
| CGCGTTGAAGAAGACGAAGA+GGG | + | chr5_2:63247006-63247025 | None:intergenic | 50.0% | |
| ACGCGTTGAAGAAGACGAAG+AGG | + | chr5_2:63247007-63247026 | None:intergenic | 50.0% | |
| GGAAAGGTGGAACTTACAGC+AGG | + | chr5_2:63247122-63247141 | None:intergenic | 50.0% | |
| ! | ACTCTGTTGTGGGGGGTTTT+TGG | - | chr5_2:63247396-63247415 | Msa0781010:CDS | 50.0% |
| ! | TGAGGAGGTGCATAGCAACT+TGG | - | chr5_2:63247534-63247553 | Msa0781010:CDS | 50.0% |
| ! | GAGGAGGTGCATAGCAACTT+GGG | - | chr5_2:63247535-63247554 | Msa0781010:CDS | 50.0% |
| !! | TCATAGGTTGGCACCGCTTT+TGG | - | chr5_2:63247952-63247971 | Msa0781010:intron | 50.0% |
| GGCTGTCATGCTGTGTACTA+CGG | - | chr5_2:63248006-63248025 | Msa0781010:intron | 50.0% | |
| ATGCTGTGTACTACGGTACG+AGG | - | chr5_2:63248013-63248032 | Msa0781010:intron | 50.0% | |
| TGCTGTGTACTACGGTACGA+GGG | - | chr5_2:63248014-63248033 | Msa0781010:intron | 50.0% | |
| AGTTTCGCGGGCAATTGTGT+CGG | - | chr5_2:63248114-63248133 | Msa0781010:intron | 50.0% | |
| TGACGATGATGACAGCGATG+AGG | - | chr5_2:63249040-63249059 | Msa0781010:intron | 50.0% | |
| AACATGCGCATACCAGTGGA+AGG | - | chr5_2:63249584-63249603 | Msa0781010:intron | 50.0% | |
| ACATGCGCATACCAGTGGAA+GGG | - | chr5_2:63249585-63249604 | Msa0781010:intron | 50.0% | |
| ! | CAGTTTTACTTCCATGGCCG+CGG | + | chr5_2:63249639-63249658 | None:intergenic | 50.0% |
| ACACCAACTCCTATCCCATC+CGG | - | chr5_2:63249901-63249920 | Msa0781010:intron | 50.0% | |
| GAAGATGAACCGGATGGGAT+AGG | + | chr5_2:63249913-63249932 | None:intergenic | 50.0% | |
| ! | GCATACACAACGCACCGATC+AGG | + | chr5_2:63247783-63247802 | None:intergenic | 55.0% |
| GCAGCAGAACCGCCTAAATC+AGG | + | chr5_2:63248891-63248910 | None:intergenic | 55.0% | |
| TTAGGCGGTTCTGCTGCAAC+TGG | - | chr5_2:63248894-63248913 | Msa0781010:intron | 55.0% | |
| CTCGCGCAAGAAATAGGAGC+AGG | + | chr5_2:63248966-63248985 | None:intergenic | 55.0% | |
| CGAGAACATGCGCATACCAG+TGG | - | chr5_2:63249580-63249599 | Msa0781010:intron | 55.0% | |
| CATGCGCATACCAGTGGAAG+GGG | - | chr5_2:63249586-63249605 | Msa0781010:intron | 55.0% | |
| TCCATGTCGTCATCCGGATC+CGG | + | chr5_2:63249871-63249890 | None:intergenic | 55.0% | |
| !! | GGATGGGATAGGAGTTGGTG+TGG | + | chr5_2:63249902-63249921 | None:intergenic | 55.0% |
| GAACCGGATGGGATAGGAGT+TGG | + | chr5_2:63249907-63249926 | None:intergenic | 55.0% | |
| GCAAAGTGGTGTGCAGTGGC+AGG | + | chr5_2:63249134-63249153 | None:intergenic | 60.0% | |
| CGCATGTTCTCGCTGTGCGA+AGG | + | chr5_2:63249572-63249591 | None:intergenic | 60.0% | |
| ATACCAGTGGAAGGGGCGGT+AGG | - | chr5_2:63249593-63249612 | Msa0781010:intron | 60.0% | |
| TACCAGTGGAAGGGGCGGTA+GGG | - | chr5_2:63249594-63249613 | Msa0781010:intron | 60.0% | |
| TCCGGATCCGGATGACGACA+TGG | - | chr5_2:63249867-63249886 | Msa0781010:intron | 60.0% | |
| GCGCATACCAGTGGAAGGGG+CGG | - | chr5_2:63249589-63249608 | Msa0781010:intron | 65.0% | |
| ACCAGTGGAAGGGGCGGTAG+GGG | - | chr5_2:63249595-63249614 | Msa0781010:intron | 65.0% | |
| ACCCCTACCGCCCCTTCCAC+TGG | + | chr5_2:63249599-63249618 | None:intergenic | 70.0% | |
| GGAAGGGGCGGTAGGGGTAG+AGG | - | chr5_2:63249601-63249620 | Msa0781010:intron | 70.0% | |
| GGGCGGTAGGGGTAGAGGCA+GGG | - | chr5_2:63249606-63249625 | Msa0781010:intron | 70.0% | |
| GGCGGTAGGGGTAGAGGCAG+GGG | - | chr5_2:63249607-63249626 | Msa0781010:intron | 70.0% | |
| AGGGGTAGAGGCAGGGGTCG+TGG | - | chr5_2:63249613-63249632 | Msa0781010:intron | 70.0% | |
| GGGGCGGTAGGGGTAGAGGC+AGG | - | chr5_2:63249605-63249624 | Msa0781010:intron | 75.0% | |
| AGAGGCAGGGGTCGTGGCCG+CGG | - | chr5_2:63249619-63249638 | Msa0781010:intron | 75.0% | |
| ! | AGGGGTCGTGGCCGCGGCCA+TGG | - | chr5_2:63249625-63249644 | Msa0781010:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 63246945 | 63250325 | 63246945 | ID=Msa0781010;Name=Msa0781010 |
| chr5_2 | mRNA | 63246945 | 63250325 | 63246945 | ID=Msa0781010-mRNA-1;Parent=Msa0781010;Name=Msa0781010-mRNA-1;_AED=0.07;_eAED=0.07;_QI=147|1|1|1|0.8|0.83|6|224|298 |
| chr5_2 | exon | 63246945 | 63247690 | 63246945 | ID=Msa0781010-mRNA-1:exon:18838;Parent=Msa0781010-mRNA-1 |
| chr5_2 | exon | 63248188 | 63248245 | 63248188 | ID=Msa0781010-mRNA-1:exon:18837;Parent=Msa0781010-mRNA-1 |
| chr5_2 | exon | 63248327 | 63248443 | 63248327 | ID=Msa0781010-mRNA-1:exon:18836;Parent=Msa0781010-mRNA-1 |
| chr5_2 | exon | 63248554 | 63248647 | 63248554 | ID=Msa0781010-mRNA-1:exon:18835;Parent=Msa0781010-mRNA-1 |
| chr5_2 | exon | 63248774 | 63248846 | 63248774 | ID=Msa0781010-mRNA-1:exon:18834;Parent=Msa0781010-mRNA-1 |
| chr5_2 | exon | 63250146 | 63250325 | 63250146 | ID=Msa0781010-mRNA-1:exon:18833;Parent=Msa0781010-mRNA-1 |
| chr5_2 | five_prime_UTR | 63250179 | 63250325 | 63250179 | ID=Msa0781010-mRNA-1:five_prime_utr;Parent=Msa0781010-mRNA-1 |
| chr5_2 | CDS | 63250146 | 63250178 | 63250146 | ID=Msa0781010-mRNA-1:cds;Parent=Msa0781010-mRNA-1 |
| chr5_2 | CDS | 63248774 | 63248846 | 63248774 | ID=Msa0781010-mRNA-1:cds;Parent=Msa0781010-mRNA-1 |
| chr5_2 | CDS | 63248554 | 63248647 | 63248554 | ID=Msa0781010-mRNA-1:cds;Parent=Msa0781010-mRNA-1 |
| chr5_2 | CDS | 63248327 | 63248443 | 63248327 | ID=Msa0781010-mRNA-1:cds;Parent=Msa0781010-mRNA-1 |
| chr5_2 | CDS | 63248188 | 63248245 | 63248188 | ID=Msa0781010-mRNA-1:cds;Parent=Msa0781010-mRNA-1 |
| chr5_2 | CDS | 63247169 | 63247690 | 63247169 | ID=Msa0781010-mRNA-1:cds;Parent=Msa0781010-mRNA-1 |
| chr5_2 | three_prime_UTR | 63246945 | 63247168 | 63246945 | ID=Msa0781010-mRNA-1:three_prime_utr;Parent=Msa0781010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
