Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0781470 | XP_003617086.1 | 97.120 | 625 | 8 | 1 | 12 | 636 | 1 | 615 | 0.0 | 1265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0781470 | sp|O24606|EIN3_ARATH | 61.035 | 657 | 191 | 13 | 13 | 634 | 1 | 627 | 0.0 | 743 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0781470 | G7K2Y0 | 97.120 | 625 | 8 | 1 | 12 | 636 | 1 | 615 | 0.0 | 1265 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0781470 | TF | EIL |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0781470 | MtrunA17_Chr5g0440591 | 97.120 | 625 | 8 | 1 | 12 | 636 | 1 | 615 | 0.0 | 1265 |
| Msa0781470 | MtrunA17_Chr3g0118361 | 67.278 | 654 | 155 | 21 | 12 | 634 | 2 | 627 | 0.0 | 801 |
| Msa0781470 | MtrunA17_Chr2g0329151 | 60.417 | 336 | 117 | 6 | 18 | 344 | 1 | 329 | 1.10e-133 | 405 |
| Msa0781470 | MtrunA17_Chr3g0124291 | 62.791 | 258 | 85 | 4 | 57 | 309 | 29 | 280 | 1.24e-109 | 337 |
| Msa0781470 | MtrunA17_Chr8g0382561 | 60.837 | 263 | 97 | 3 | 50 | 309 | 12 | 271 | 4.67e-105 | 325 |
| Msa0781470 | MtrunA17_Chr6g0476301 | 54.430 | 237 | 106 | 2 | 114 | 349 | 1 | 236 | 4.39e-89 | 281 |
| Msa0781470 | MtrunA17_Chr3g0080401 | 55.702 | 228 | 100 | 1 | 114 | 341 | 1 | 227 | 1.84e-88 | 278 |
| Msa0781470 | MtrunA17_Chr6g0473191 | 54.852 | 237 | 105 | 2 | 114 | 349 | 1 | 236 | 2.37e-88 | 277 |
| Msa0781470 | MtrunA17_Chr6g0476291 | 59.024 | 205 | 83 | 1 | 114 | 317 | 1 | 205 | 4.35e-86 | 270 |
| Msa0781470 | MtrunA17_Chr7g0260281 | 43.902 | 123 | 56 | 4 | 103 | 215 | 1 | 120 | 1.20e-18 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0781470 | AT3G20770.1 | 61.035 | 657 | 191 | 13 | 13 | 634 | 1 | 627 | 0.0 | 743 |
| Msa0781470 | AT2G27050.1 | 59.594 | 641 | 183 | 20 | 12 | 634 | 1 | 583 | 0.0 | 672 |
| Msa0781470 | AT1G73730.2 | 61.682 | 321 | 92 | 6 | 45 | 347 | 11 | 318 | 1.84e-131 | 397 |
| Msa0781470 | AT1G73730.1 | 61.682 | 321 | 92 | 6 | 45 | 347 | 23 | 330 | 3.87e-131 | 397 |
| Msa0781470 | AT5G21120.2 | 46.824 | 425 | 177 | 9 | 33 | 443 | 31 | 420 | 2.47e-114 | 352 |
| Msa0781470 | AT5G21120.3 | 46.824 | 425 | 177 | 9 | 33 | 443 | 24 | 413 | 2.85e-114 | 352 |
| Msa0781470 | AT5G21120.1 | 46.824 | 425 | 177 | 9 | 33 | 443 | 24 | 413 | 2.85e-114 | 352 |
| Msa0781470 | AT5G10120.1 | 57.818 | 275 | 109 | 4 | 39 | 309 | 4 | 275 | 4.02e-105 | 327 |
| Msa0781470 | AT5G65100.1 | 42.958 | 426 | 190 | 10 | 55 | 440 | 33 | 445 | 3.10e-100 | 317 |
Find 190 sgRNAs with CRISPR-Local
Find 257 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGCACAAGGCTTTGTTTA+TGG | 0.190580 | 5_2:-63990751 | Msa0781470:CDS |
| ACCTCGGTAGCATGAAAATT+AGG | 0.199653 | 5_2:+63989755 | None:intergenic |
| CCACCTTCATTCGATTTAAC+TGG | 0.245739 | 5_2:-63989665 | Msa0781470:CDS |
| GGTGGAGGGCCTTGATCTTT+AGG | 0.277617 | 5_2:+63990397 | None:intergenic |
| TTTAACTGGGTTTGGAGTTT+CGG | 0.307024 | 5_2:-63989651 | Msa0781470:CDS |
| AAGCTTTGTGGGAAAATAAC+TGG | 0.313704 | 5_2:+63989728 | None:intergenic |
| GCAGGCTGAACTGTAGAATT+AGG | 0.320347 | 5_2:+63989698 | None:intergenic |
| GATCTTTAGGCAAACCGATC+TGG | 0.332130 | 5_2:+63990410 | None:intergenic |
| AGGCACAAGGCTTTGTTTAT+GGG | 0.334965 | 5_2:-63990750 | Msa0781470:CDS |
| ATCTGCTTGATACTTGGATA+TGG | 0.336300 | 5_2:+63990630 | None:intergenic |
| GTATGGTTCTTCATGTGATT+TGG | 0.348025 | 5_2:-63989321 | Msa0781470:CDS |
| ACACACCTTGCAAGAATTAC+AGG | 0.349517 | 5_2:-63990557 | Msa0781470:CDS |
| TCATCCTCGACCACCGAATC+TGG | 0.353514 | 5_2:+63990985 | None:intergenic |
| TGCGTTATCTGCTTGATACT+TGG | 0.353824 | 5_2:+63990624 | None:intergenic |
| AAGCCAGGTTGCGCTTTCCT+TGG | 0.356760 | 5_2:+63990237 | None:intergenic |
| AACAACAAGATGTTTCAATA+TGG | 0.364077 | 5_2:-63989235 | Msa0781470:CDS |
| CCTTTCAAGATAGGTCTTCC+AGG | 0.366977 | 5_2:-63989838 | Msa0781470:CDS |
| TTGCATCCATCATTCTTTCC+TGG | 0.368112 | 5_2:+63990598 | None:intergenic |
| ATCTTTAGGCAAACCGATCT+GGG | 0.368749 | 5_2:+63990411 | None:intergenic |
| TACCTCCACCAGAGGATAAC+GGG | 0.368904 | 5_2:+63990158 | None:intergenic |
| AAGTCATGAGGTTTCTTGTA+TGG | 0.369753 | 5_2:+63990376 | None:intergenic |
| ATTATTGTTGTTGTTGAGGT+TGG | 0.371583 | 5_2:+63989355 | None:intergenic |
| TTGCGAATCTTGGCTATATC+AGG | 0.374628 | 5_2:+63990301 | None:intergenic |
| GTCCTGTTGTTGCTGAATGA+TGG | 0.379003 | 5_2:+63989478 | None:intergenic |
| CCTCCACCATGGTGGCCAAC+CGG | 0.379505 | 5_2:-63990451 | Msa0781470:CDS |
| ATCAATTCCTTCTTTAGCCT+TGG | 0.381143 | 5_2:+63990876 | None:intergenic |
| TCATTCGATTTAACTGGGTT+TGG | 0.382118 | 5_2:-63989659 | Msa0781470:CDS |
| TTCAATAACTACACAATTGG+TGG | 0.384657 | 5_2:+63989553 | None:intergenic |
| CCTCACGAGCTTGCGAATCT+TGG | 0.387734 | 5_2:+63990291 | None:intergenic |
| TGGTGGAGGTACTGGTTCTA+TGG | 0.388085 | 5_2:-63990146 | Msa0781470:CDS |
| GGTTTCAAAAGGAGAGTTCA+TGG | 0.396115 | 5_2:+63989376 | None:intergenic |
| TTATCCTCTGGTGGAGGTAC+TGG | 0.399202 | 5_2:-63990154 | Msa0781470:CDS |
| AATCTTCATCCATCCAATCT+TGG | 0.400017 | 5_2:-63990043 | Msa0781470:CDS |
| CATTCTATCCATCCCAAGAT+TGG | 0.409448 | 5_2:+63990030 | None:intergenic |
| TAGGTTGAACAAAGCTTTGT+GGG | 0.411860 | 5_2:+63989717 | None:intergenic |
| AGAAACAGTCCTGCAGGTTA+TGG | 0.412726 | 5_2:-63989782 | Msa0781470:CDS |
| CTCGCCTTGCCTTTCAAGAT+AGG | 0.415938 | 5_2:-63989847 | Msa0781470:CDS |
| CAAGCAGATAACGCAATTCC+AGG | 0.415992 | 5_2:-63990616 | Msa0781470:CDS |
| TTGTGGTACACTTGGGGAAG+GGG | 0.423585 | 5_2:-63991034 | Msa0781470:CDS |
| TTGATTGATGATGGCAAGCC+AGG | 0.425788 | 5_2:+63990222 | None:intergenic |
| AATAATATGCATCCCATGTA+TGG | 0.430283 | 5_2:-63989338 | Msa0781470:CDS |
| TCCTGTTGTTGCTGAATGAT+GGG | 0.434795 | 5_2:+63989479 | None:intergenic |
| ATCTTCATCCATCCAATCTT+GGG | 0.436018 | 5_2:-63990042 | Msa0781470:CDS |
| GGCAAGGCAGTCTCAAGAAC+AGG | 0.441318 | 5_2:-63990845 | Msa0781470:CDS |
| TGATGAGAAGGTTGCTGCAC+TGG | 0.445924 | 5_2:+63989995 | None:intergenic |
| TGAGGTTTCTTGTATGGTGG+AGG | 0.446444 | 5_2:+63990382 | None:intergenic |
| TTGTTGAGGTTGGTTTCAAA+AGG | 0.451254 | 5_2:+63989365 | None:intergenic |
| GGGAGAGGTTGTCACAAACT+TGG | 0.451465 | 5_2:-63989966 | Msa0781470:CDS |
| CCTCGGTAGCATGAAAATTA+GGG | 0.456819 | 5_2:+63989756 | None:intergenic |
| CACCTTCATTCGATTTAACT+GGG | 0.462918 | 5_2:-63989664 | Msa0781470:CDS |
| GGCTATGATACACATGTTAT+AGG | 0.462962 | 5_2:-63989593 | Msa0781470:CDS |
| TCACAAACTTGGATTTCATT+CGG | 0.464079 | 5_2:-63989955 | Msa0781470:CDS |
| TGATTATAGTGATGAAGAAA+TGG | 0.464489 | 5_2:-63990965 | Msa0781470:CDS |
| GGATTCCTCTTGATTGATGA+TGG | 0.464516 | 5_2:+63990213 | None:intergenic |
| GCCCATCATTCAGCAACAAC+AGG | 0.469177 | 5_2:-63989480 | Msa0781470:CDS |
| GGCCAACCGGGACTGAAGAC+TGG | 0.469478 | 5_2:-63990438 | Msa0781470:CDS |
| TTGGATGGATGAAGATTCTC+GGG | 0.470657 | 5_2:+63990049 | None:intergenic |
| GCATATTATTGTTGTTGTTG+AGG | 0.474406 | 5_2:+63989351 | None:intergenic |
| CAGGCAAACCGAGCCAGATT+CGG | 0.479153 | 5_2:-63990998 | Msa0781470:CDS |
| TCGTGAATGGTGGAAGGATA+AGG | 0.479265 | 5_2:-63990680 | Msa0781470:CDS |
| TTTGTGGTACACTTGGGGAA+GGG | 0.482049 | 5_2:-63991035 | Msa0781470:CDS |
| GAAAATGATGGAGGTTTGTA+AGG | 0.484505 | 5_2:-63990770 | Msa0781470:CDS |
| TCCTCAGAGGCGTTTCCCAT+TGG | 0.490597 | 5_2:-63990485 | Msa0781470:CDS |
| GAGAGTTCATGGCCTTGAAC+CGG | 0.490862 | 5_2:+63989387 | None:intergenic |
| AAGGGGATATTTCTTCTGTC+AGG | 0.493214 | 5_2:-63991017 | Msa0781470:CDS |
| GAGGATTGCCCTTCTCCAAT+GGG | 0.493994 | 5_2:+63990470 | None:intergenic |
| ACGAAGATTGTCAGATGCTC+CGG | 0.495666 | 5_2:+63990699 | None:intergenic |
| ATTGGATGGATGAAGATTCT+CGG | 0.495807 | 5_2:+63990048 | None:intergenic |
| AATTCCCGAGAAGGGAAAAC+CGG | 0.496336 | 5_2:-63990725 | Msa0781470:CDS |
| TTGTCAGATGCTCCGGTCAC+CGG | 0.496468 | 5_2:+63990706 | None:intergenic |
| GCAACCTTCTCATCAAATCA+AGG | 0.497251 | 5_2:-63989987 | Msa0781470:CDS |
| GGGCCACCAGTCTTCAGTCC+CGG | 0.499009 | 5_2:+63990432 | None:intergenic |
| CCGGTTGGCCACCATGGTGG+AGG | 0.499341 | 5_2:+63990451 | None:intergenic |
| AAATCAGTTTGACCGGTTCA+AGG | 0.500225 | 5_2:-63989399 | Msa0781470:CDS |
| CATCAATCAAGAGGAATCCT+TGG | 0.505411 | 5_2:-63990209 | Msa0781470:CDS |
| GATGATGATGTTTGAGGACA+TGG | 0.505605 | 5_2:-63991082 | Msa0781470:CDS |
| TCTTGCAAGGTGTGTGGAGT+TGG | 0.508004 | 5_2:+63990565 | None:intergenic |
| TGCAGTGAGTATGATGTTGA+TGG | 0.508204 | 5_2:-63990112 | Msa0781470:CDS |
| ATGATCAGCGACCTTATGTC+AGG | 0.516438 | 5_2:-63989614 | Msa0781470:CDS |
| CGAGCCAGATTCGGTGGTCG+AGG | 0.516671 | 5_2:-63990989 | Msa0781470:CDS |
| CTCGACCACCGAATCTGGCT+CGG | 0.517344 | 5_2:+63990990 | None:intergenic |
| GAATTACAGGACACAACCTT+GGG | 0.517537 | 5_2:-63990544 | Msa0781470:CDS |
| TAACGACTTCAACATGATGA+TGG | 0.518203 | 5_2:-63989918 | Msa0781470:CDS |
| GGAGGATTGCCCTTCTCCAA+TGG | 0.519182 | 5_2:+63990469 | None:intergenic |
| ATCGGTTTGCCTAAAGATCA+AGG | 0.519416 | 5_2:-63990406 | Msa0781470:CDS |
| ATGAGCTTGAGCGGAGGATG+TGG | 0.520497 | 5_2:-63990936 | Msa0781470:CDS |
| ATCACATGAAGAACCATACA+TGG | 0.521967 | 5_2:+63989325 | None:intergenic |
| AGAATTACAGGACACAACCT+TGG | 0.524464 | 5_2:-63990545 | Msa0781470:CDS |
| CTCCACCATGGTGGCCAACC+GGG | 0.526692 | 5_2:-63990450 | Msa0781470:CDS |
| GTGTATCATAGCCTGACATA+AGG | 0.531266 | 5_2:+63989603 | None:intergenic |
| GAGGCGTTTCCCATTGGAGA+AGG | 0.531537 | 5_2:-63990479 | Msa0781470:CDS |
| GAGGTTTCTTGTATGGTGGA+GGG | 0.533491 | 5_2:+63990383 | None:intergenic |
| GCAATTCCAGGAAAGAATGA+TGG | 0.536106 | 5_2:-63990604 | Msa0781470:CDS |
| TCTCCCTTGATTTGATGAGA+AGG | 0.537373 | 5_2:+63989983 | None:intergenic |
| ATTCAATTGATGATTGTCCC+TGG | 0.537403 | 5_2:+63989820 | None:intergenic |
| ATCTTGGGATGGATAGAATG+AGG | 0.537865 | 5_2:-63990027 | Msa0781470:CDS |
| TAGATCCTCCTTAAAATCAA+AGG | 0.539849 | 5_2:+63989295 | None:intergenic |
| GTACCTCCACCAGAGGATAA+CGG | 0.539881 | 5_2:+63990157 | None:intergenic |
| TCAGTCCCGGTTGGCCACCA+TGG | 0.540302 | 5_2:+63990445 | None:intergenic |
| ACTTGGATTTCATTCGGAAG+AGG | 0.540565 | 5_2:-63989949 | Msa0781470:CDS |
| TTAGGTTGAACAAAGCTTTG+TGG | 0.541625 | 5_2:+63989716 | None:intergenic |
| GGGTTTGGAGTTTCGGAGGA+CGG | 0.542268 | 5_2:-63989644 | Msa0781470:CDS |
| GAACAAACCAAGGCTAAAGA+AGG | 0.542936 | 5_2:-63990883 | Msa0781470:CDS |
| TTTGAATCAAGGAATGGTGA+TGG | 0.544516 | 5_2:-63989447 | Msa0781470:CDS |
| CAGCCAAGGAAAGCGCAACC+TGG | 0.544615 | 5_2:-63990240 | Msa0781470:CDS |
| GAAGTACATGCTGAAAATGA+TGG | 0.545558 | 5_2:-63990782 | Msa0781470:CDS |
| AGCTTGAGCGGAGGATGTGG+AGG | 0.545764 | 5_2:-63990933 | Msa0781470:CDS |
| GAGAAGGGAAAACCGGTGAC+CGG | 0.547110 | 5_2:-63990718 | Msa0781470:CDS |
| AGAAACAGAAACAGTCCTGC+AGG | 0.548675 | 5_2:-63989788 | Msa0781470:CDS |
| GGACTGTTTCTGTTTCTATG+TGG | 0.550312 | 5_2:+63989794 | None:intergenic |
| GAAGGTGGAACTAAACTAGC+AGG | 0.551330 | 5_2:+63989680 | None:intergenic |
| AGGATAAGGTTCGGTTCGAT+AGG | 0.552012 | 5_2:-63990666 | Msa0781470:CDS |
| TTAGGGTCGCCATAACCTGC+AGG | 0.552645 | 5_2:+63989773 | None:intergenic |
| GCTGAATGATGGGCTGAGAA+AGG | 0.553081 | 5_2:+63989489 | None:intergenic |
| GCTGAATGATGGGCTGAGAA+AGG | 0.553081 | 5_2:+63989522 | None:intergenic |
| TTCTCATCAAATCAAGGGAG+AGG | 0.554659 | 5_2:-63989981 | Msa0781470:CDS |
| CTTTCAAGATAGGTCTTCCA+GGG | 0.555713 | 5_2:-63989837 | Msa0781470:CDS |
| TATGGGATAATTCCCGAGAA+GGG | 0.556990 | 5_2:-63990733 | Msa0781470:CDS |
| GGAAAAGATGATGATGTTTG+AGG | 0.557260 | 5_2:-63991088 | Msa0781470:CDS |
| CTATCCATCCCAAGATTGGA+TGG | 0.557944 | 5_2:+63990034 | None:intergenic |
| CTGACAATCTTCGTGAATGG+TGG | 0.558385 | 5_2:-63990690 | Msa0781470:CDS |
| GGTGTGTGGAGTTGGACCTA+TGG | 0.558968 | 5_2:+63990573 | None:intergenic |
| CCTGGAAGACCTATCTTGAA+AGG | 0.560673 | 5_2:+63989838 | None:intergenic |
| TTGATACTTGGATATGGCAG+CGG | 0.562030 | 5_2:+63990636 | None:intergenic |
| CTACAACTACAAGGAGGAGT+AGG | 0.563021 | 5_2:-63989275 | Msa0781470:CDS |
| AACCCAGTTAAATCGAATGA+AGG | 0.563631 | 5_2:+63989662 | None:intergenic |
| TGATACTTGGATATGGCAGC+GGG | 0.565531 | 5_2:+63990637 | None:intergenic |
| GCGAGGAAAATCAGTTTGAC+CGG | 0.565875 | 5_2:-63989406 | Msa0781470:CDS |
| CATCTGACAATCTTCGTGAA+TGG | 0.567255 | 5_2:-63990693 | Msa0781470:CDS |
| CCAAGATTCGCAAGCTCGTG+AGG | 0.567603 | 5_2:-63990291 | Msa0781470:CDS |
| TCATGAGGTTTCTTGTATGG+TGG | 0.567990 | 5_2:+63990379 | None:intergenic |
| CACCAGTCTTCAGTCCCGGT+TGG | 0.570122 | 5_2:+63990436 | None:intergenic |
| TTATGGGATAATTCCCGAGA+AGG | 0.572124 | 5_2:-63990734 | Msa0781470:CDS |
| AATGGTGGAAGGATAAGGTT+CGG | 0.572803 | 5_2:-63990675 | Msa0781470:CDS |
| AGGCGTTTCCCATTGGAGAA+GGG | 0.573544 | 5_2:-63990478 | Msa0781470:CDS |
| GGCAGTCTCAAGAACAGGCA+AGG | 0.574300 | 5_2:-63990840 | Msa0781470:CDS |
| AGAAGGAATTGATGCTGCAA+AGG | 0.574701 | 5_2:-63990866 | Msa0781470:CDS |
| GCAGTGAGTATGATGTTGAT+GGG | 0.574936 | 5_2:-63990111 | Msa0781470:CDS |
| GTCCCGGTTGGCCACCATGG+TGG | 0.575585 | 5_2:+63990448 | None:intergenic |
| TGGATATAGTTCTCGAGCCA+AGG | 0.577085 | 5_2:+63990192 | None:intergenic |
| AACTGGGTTTGGAGTTTCGG+AGG | 0.578482 | 5_2:-63989648 | Msa0781470:CDS |
| AATGATGGATGCAATTCCAT+AGG | 0.584074 | 5_2:-63990589 | Msa0781470:CDS |
| CGAGTCAAACTTTGATGTGG+AGG | 0.584361 | 5_2:-63990080 | Msa0781470:CDS |
| AATGGGAAACGCCTCTGAGG+AGG | 0.586375 | 5_2:+63990487 | None:intergenic |
| TGCTGATAAGAGAGAACCCA+AGG | 0.586902 | 5_2:+63990528 | None:intergenic |
| TAGTGATGAAGAAATGGATG+TGG | 0.587114 | 5_2:-63990959 | Msa0781470:CDS |
| TGTAATTCTTGCAAGGTGTG+TGG | 0.593213 | 5_2:+63990559 | None:intergenic |
| TGTGTCCTGTAATTCTTGCA+AGG | 0.594212 | 5_2:+63990552 | None:intergenic |
| TCTTGGGATGGATAGAATGA+GGG | 0.594489 | 5_2:-63990026 | Msa0781470:CDS |
| TCAAGATAAAATGACAGCCA+AGG | 0.597129 | 5_2:-63990254 | Msa0781470:CDS |
| TCATCCATCCAATCTTGGGA+TGG | 0.598664 | 5_2:-63990038 | Msa0781470:CDS |
| CCAGTTAAATCGAATGAAGG+TGG | 0.598931 | 5_2:+63989665 | None:intergenic |
| CTTGGGATGGATAGAATGAG+GGG | 0.601634 | 5_2:-63990025 | Msa0781470:CDS |
| CAATCTTCGTGAATGGTGGA+AGG | 0.601878 | 5_2:-63990686 | Msa0781470:CDS |
| CAACCTTCTCATCAAATCAA+GGG | 0.606873 | 5_2:-63989986 | Msa0781470:CDS |
| AAGGAGGATCTACAACTACA+AGG | 0.608788 | 5_2:-63989284 | Msa0781470:CDS |
| AAGGTTCGGTTCGATAGGAA+TGG | 0.610184 | 5_2:-63990661 | Msa0781470:CDS |
| GCAAACCGAGCCAGATTCGG+TGG | 0.610299 | 5_2:-63990995 | Msa0781470:CDS |
| ACTACAAGGAGGAGTAGGAA+TGG | 0.611304 | 5_2:-63989270 | Msa0781470:CDS |
| AAGATGTCAAGAGCTCAAGA+TGG | 0.612194 | 5_2:-63990811 | Msa0781470:CDS |
| GCTTCGCTGTAAGCGCATTG+AGG | 0.613195 | 5_2:+63989869 | None:intergenic |
| CGGCGAGTCAAACTTTGATG+TGG | 0.614982 | 5_2:-63990083 | Msa0781470:CDS |
| TCCAATGGGAAACGCCTCTG+AGG | 0.618975 | 5_2:+63990484 | None:intergenic |
| GAAGACTGGTGGCCCCAGAT+CGG | 0.620125 | 5_2:-63990424 | Msa0781470:CDS |
| AAGACCTATCTTGAAAGGCA+AGG | 0.620631 | 5_2:+63989843 | None:intergenic |
| TATGATGTTGATGGGGCTGA+CGG | 0.622733 | 5_2:-63990103 | Msa0781470:CDS |
| GCTTGCCATCATCAATCAAG+AGG | 0.624863 | 5_2:-63990218 | Msa0781470:CDS |
| GAATTGATGCTGCAAAGGCA+AGG | 0.624873 | 5_2:-63990861 | Msa0781470:CDS |
| GAATCAAGGAATGGTGATGG+AGG | 0.630262 | 5_2:-63989444 | Msa0781470:CDS |
| ATGGAGGTTTGTAAGGCACA+AGG | 0.638043 | 5_2:-63990763 | Msa0781470:CDS |
| GAAAATAACTGGCTTAACCT+CGG | 0.643010 | 5_2:+63989739 | None:intergenic |
| GCTTGAGCGGAGGATGTGGA+GGG | 0.653404 | 5_2:-63990932 | Msa0781470:CDS |
| AGTCTCAAGAACAGGCAAGG+AGG | 0.658159 | 5_2:-63990837 | Msa0781470:CDS |
| TGGATGTGGATGAGCTTGAG+CGG | 0.660750 | 5_2:-63990945 | Msa0781470:CDS |
| CAACCGGGACTGAAGACTGG+TGG | 0.661902 | 5_2:-63990435 | Msa0781470:CDS |
| TCTTTAGGCAAACCGATCTG+GGG | 0.665997 | 5_2:+63990412 | None:intergenic |
| ATGATGATGTTTGAGGACAT+GGG | 0.668420 | 5_2:-63991081 | Msa0781470:CDS |
| AGCACTGCGATCCTCCTCAG+AGG | 0.670631 | 5_2:-63990498 | Msa0781470:CDS |
| ACCTCCACCAGAGGATAACG+GGG | 0.673590 | 5_2:+63990159 | None:intergenic |
| TCACATGAAGAACCATACAT+GGG | 0.685805 | 5_2:+63989326 | None:intergenic |
| GCGACTGAAAGAACAAACCA+AGG | 0.688069 | 5_2:-63990893 | Msa0781470:CDS |
| CAGTGAGTATGATGTTGATG+GGG | 0.693933 | 5_2:-63990110 | Msa0781470:CDS |
| AGGGCAATCCTCCACCATGG+TGG | 0.709968 | 5_2:-63990459 | Msa0781470:CDS |
| ATGTGGATGAGCTTGAGCGG+AGG | 0.710465 | 5_2:-63990942 | Msa0781470:CDS |
| AGAAGGGCAATCCTCCACCA+TGG | 0.713618 | 5_2:-63990462 | Msa0781470:CDS |
| AGAACCAGTACCTCCACCAG+AGG | 0.719646 | 5_2:+63990150 | None:intergenic |
| GTACATGCTGAAAATGATGG+AGG | 0.724912 | 5_2:-63990779 | Msa0781470:CDS |
| CTCCACCAGAGGATAACGGG+GGG | 0.729921 | 5_2:+63990161 | None:intergenic |
| CCTCCACCAGAGGATAACGG+GGG | 0.744768 | 5_2:+63990160 | None:intergenic |
| GAGGATCTACAACTACAAGG+AGG | 0.776973 | 5_2:-63989281 | Msa0781470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTATTTCATTTATTGAT+TGG | - | chr5_2:63989583-63989602 | Msa0781470:CDS | 15.0% |
| !!! | TGTTTTTTTTTTACTGCTTT+TGG | - | chr5_2:63989230-63989249 | Msa0781470:CDS | 20.0% |
| !!! | GTTTTTTTTTTACTGCTTTT+GGG | - | chr5_2:63989231-63989250 | Msa0781470:CDS | 20.0% |
| !! | GCTTCAATAAAAATTGTTAA+AGG | + | chr5_2:63989419-63989438 | None:intergenic | 20.0% |
| !!! | ATATTTTTACTTCATCTAGA+AGG | - | chr5_2:63989762-63989781 | Msa0781470:CDS | 20.0% |
| !!! | ATTTTCAATAACTACACAAT+TGG | + | chr5_2:63991525-63991544 | None:intergenic | 20.0% |
| !!! | ATTAGTTTTGTTGCTATTCA+TGG | - | chr5_2:63989316-63989335 | Msa0781470:CDS | 25.0% |
| !!! | AAGTATCTGCTTTTGAAAAT+TGG | - | chr5_2:63989686-63989705 | Msa0781470:CDS | 25.0% |
| !!! | AGTATCTGCTTTTGAAAATT+GGG | - | chr5_2:63989687-63989706 | Msa0781470:CDS | 25.0% |
| ! | TGATTATAGTGATGAAGAAA+TGG | - | chr5_2:63990107-63990126 | Msa0781470:CDS | 25.0% |
| !! | GACAATTTCTTTTTGAATCA+AGG | - | chr5_2:63991614-63991633 | Msa0781470:intron | 25.0% |
| !! | TTTCTTTTTGAATCAAGGAA+TGG | - | chr5_2:63991619-63991638 | Msa0781470:intron | 25.0% |
| ! | AACAACAAGATGTTTCAATA+TGG | - | chr5_2:63991837-63991856 | Msa0781470:intron | 25.0% |
| GAATAGCAACAAAACTAATC+AGG | + | chr5_2:63989315-63989334 | None:intergenic | 30.0% | |
| !!! | CTAAATTGTTCTTGGTTTTG+TGG | - | chr5_2:63989807-63989826 | Msa0781470:CDS | 30.0% |
| ! | TTTTGATAGGTTTAAAGGTG+TGG | - | chr5_2:63989831-63989850 | Msa0781470:CDS | 30.0% |
| !! | GAGAATTCATTGATTTGAGT+TGG | - | chr5_2:63989863-63989882 | Msa0781470:CDS | 30.0% |
| ! | ATCGGCTTCAAACTATAAAT+TGG | + | chr5_2:63989923-63989942 | None:intergenic | 30.0% |
| ! | TTGAAAAAAGCATGGAAAGT+TGG | - | chr5_2:63990717-63990736 | Msa0781470:CDS | 30.0% |
| !!! | CATTTTATCTTGAAGGCATT+TGG | + | chr5_2:63990811-63990830 | None:intergenic | 30.0% |
| TCACAAACTTGGATTTCATT+CGG | - | chr5_2:63991117-63991136 | Msa0781470:intron | 30.0% | |
| TTCAATAACTACACAATTGG+TGG | + | chr5_2:63991522-63991541 | None:intergenic | 30.0% | |
| !!! | TTTTGTTGTTGCTGAATGAT+GGG | + | chr5_2:63991563-63991582 | None:intergenic | 30.0% |
| ! | ATTATTGTTGTTGTTGAGGT+TGG | + | chr5_2:63991720-63991739 | None:intergenic | 30.0% |
| ! | GCATATTATTGTTGTTGTTG+AGG | + | chr5_2:63991724-63991743 | None:intergenic | 30.0% |
| AATAATATGCATCCCATGTA+TGG | - | chr5_2:63991734-63991753 | Msa0781470:intron | 30.0% | |
| !! | TTTGGCATCCTTTGATTTTA+AGG | - | chr5_2:63991769-63991788 | Msa0781470:intron | 30.0% |
| TAGATCCTCCTTAAAATCAA+AGG | + | chr5_2:63991780-63991799 | None:intergenic | 30.0% | |
| AGATGTTTGAATCCATGTTC+TGG | - | chr5_2:63989618-63989637 | Msa0781470:CDS | 35.0% | |
| AACAATATCAGACAGACTAG+AGG | + | chr5_2:63989652-63989671 | None:intergenic | 35.0% | |
| !! | ATCTGCTTTTGAAAATTGGG+TGG | - | chr5_2:63989690-63989709 | Msa0781470:CDS | 35.0% |
| TGCTCTGTCTAAATTGTTCT+TGG | - | chr5_2:63989799-63989818 | Msa0781470:CDS | 35.0% | |
| !!! | TTGGTTTTGTGGCTTTTGAT+AGG | - | chr5_2:63989818-63989837 | Msa0781470:CDS | 35.0% |
| ! | GTGGCTTTTGATAGGTTTAA+AGG | - | chr5_2:63989826-63989845 | Msa0781470:CDS | 35.0% |
| !! | AGCCGATTTTTGTGTTCATT+TGG | - | chr5_2:63989936-63989955 | Msa0781470:CDS | 35.0% |
| !! | GCCGATTTTTGTGTTCATTT+GGG | - | chr5_2:63989937-63989956 | Msa0781470:CDS | 35.0% |
| GCCCAAATGAACACAAAAAT+CGG | + | chr5_2:63989941-63989960 | None:intergenic | 35.0% | |
| TTCATTTGGGCCATCTTTAA+GGG | - | chr5_2:63989950-63989969 | Msa0781470:CDS | 35.0% | |
| ! | AACATCATCATCTTTTCCCA+GGG | + | chr5_2:63989982-63990001 | None:intergenic | 35.0% |
| ! | AAACATCATCATCTTTTCCC+AGG | + | chr5_2:63989983-63990002 | None:intergenic | 35.0% |
| ! | GGAAAAGATGATGATGTTTG+AGG | - | chr5_2:63989984-63990003 | Msa0781470:CDS | 35.0% |
| ! | ATGATGATGTTTGAGGACAT+GGG | - | chr5_2:63989991-63990010 | Msa0781470:CDS | 35.0% |
| TAGTGATGAAGAAATGGATG+TGG | - | chr5_2:63990113-63990132 | Msa0781470:CDS | 35.0% | |
| ATCAATTCCTTCTTTAGCCT+TGG | + | chr5_2:63990199-63990218 | None:intergenic | 35.0% | |
| GAAGTACATGCTGAAAATGA+TGG | - | chr5_2:63990290-63990309 | Msa0781470:CDS | 35.0% | |
| ! | GAAAATGATGGAGGTTTGTA+AGG | - | chr5_2:63990302-63990321 | Msa0781470:CDS | 35.0% |
| ATCTGCTTGATACTTGGATA+TGG | + | chr5_2:63990445-63990464 | None:intergenic | 35.0% | |
| !! | AATGATGGATGCAATTCCAT+AGG | - | chr5_2:63990483-63990502 | Msa0781470:CDS | 35.0% |
| AAGTCATGAGGTTTCTTGTA+TGG | + | chr5_2:63990699-63990718 | None:intergenic | 35.0% | |
| !!! | CATGCTTTTTTCAAGTCATG+AGG | + | chr5_2:63990711-63990730 | None:intergenic | 35.0% |
| CTCATGACTTGAAAAAAGCA+TGG | - | chr5_2:63990709-63990728 | Msa0781470:CDS | 35.0% | |
| !!! | TGGCTGTCATTTTATCTTGA+AGG | + | chr5_2:63990818-63990837 | None:intergenic | 35.0% |
| TCAAGATAAAATGACAGCCA+AGG | - | chr5_2:63990818-63990837 | Msa0781470:CDS | 35.0% | |
| ATTGGATGGATGAAGATTCT+CGG | + | chr5_2:63991027-63991046 | None:intergenic | 35.0% | |
| AATCTTCATCCATCCAATCT+TGG | - | chr5_2:63991029-63991048 | Msa0781470:CDS | 35.0% | |
| ATCTTCATCCATCCAATCTT+GGG | - | chr5_2:63991030-63991049 | Msa0781470:CDS | 35.0% | |
| CAACCTTCTCATCAAATCAA+GGG | - | chr5_2:63991086-63991105 | Msa0781470:CDS | 35.0% | |
| TAACGACTTCAACATGATGA+TGG | - | chr5_2:63991154-63991173 | Msa0781470:intron | 35.0% | |
| ! | ATTCAATTGATGATTGTCCC+TGG | + | chr5_2:63991255-63991274 | None:intergenic | 35.0% |
| ! | GAAAATAACTGGCTTAACCT+CGG | + | chr5_2:63991336-63991355 | None:intergenic | 35.0% |
| ! | AAGCTTTGTGGGAAAATAAC+TGG | + | chr5_2:63991347-63991366 | None:intergenic | 35.0% |
| ! | TAGGTTGAACAAAGCTTTGT+GGG | + | chr5_2:63991358-63991377 | None:intergenic | 35.0% |
| !! | TTAGGTTGAACAAAGCTTTG+TGG | + | chr5_2:63991359-63991378 | None:intergenic | 35.0% |
| CACCTTCATTCGATTTAACT+GGG | - | chr5_2:63991408-63991427 | Msa0781470:intron | 35.0% | |
| AACCCAGTTAAATCGAATGA+AGG | + | chr5_2:63991413-63991432 | None:intergenic | 35.0% | |
| TCATTCGATTTAACTGGGTT+TGG | - | chr5_2:63991413-63991432 | Msa0781470:intron | 35.0% | |
| ! | TTTAACTGGGTTTGGAGTTT+CGG | - | chr5_2:63991421-63991440 | Msa0781470:intron | 35.0% |
| GGCTATGATACACATGTTAT+AGG | - | chr5_2:63991479-63991498 | Msa0781470:intron | 35.0% | |
| !!! | GTTTTGTTGTTGCTGAATGA+TGG | + | chr5_2:63991564-63991583 | None:intergenic | 35.0% |
| TTTGAATCAAGGAATGGTGA+TGG | - | chr5_2:63991625-63991644 | Msa0781470:intron | 35.0% | |
| !! | TTGTTGAGGTTGGTTTCAAA+AGG | + | chr5_2:63991710-63991729 | None:intergenic | 35.0% |
| TCACATGAAGAACCATACAT+GGG | + | chr5_2:63991749-63991768 | None:intergenic | 35.0% | |
| ATCACATGAAGAACCATACA+TGG | + | chr5_2:63991750-63991769 | None:intergenic | 35.0% | |
| GTATGGTTCTTCATGTGATT+TGG | - | chr5_2:63991751-63991770 | Msa0781470:intron | 35.0% | |
| !!! | TTTTGGGATGTGTCAGTGAT+TGG | - | chr5_2:63989247-63989266 | Msa0781470:CDS | 40.0% |
| AGTTACCACGTGTTTGATGA+TGG | - | chr5_2:63989379-63989398 | Msa0781470:CDS | 40.0% | |
| ! | GTTACCACGTGTTTGATGAT+GGG | - | chr5_2:63989380-63989399 | Msa0781470:CDS | 40.0% |
| GAGGCTAAAAAACCAGAACA+TGG | + | chr5_2:63989633-63989652 | None:intergenic | 40.0% | |
| GTGGCTAGTGAATCTGAATT+AGG | - | chr5_2:63989709-63989728 | Msa0781470:CDS | 40.0% | |
| TGGCGTTTAAGAGTTAAACG+AGG | - | chr5_2:63989883-63989902 | Msa0781470:CDS | 40.0% | |
| GGCGTTTAAGAGTTAAACGA+GGG | - | chr5_2:63989884-63989903 | Msa0781470:CDS | 40.0% | |
| GTTCATTTGGGCCATCTTTA+AGG | - | chr5_2:63989949-63989968 | Msa0781470:CDS | 40.0% | |
| AGGGAAAACACCCTTAAAGA+TGG | + | chr5_2:63989963-63989982 | None:intergenic | 40.0% | |
| !!! | ATCTTTAAGGGTGTTTTCCC+TGG | - | chr5_2:63989962-63989981 | Msa0781470:CDS | 40.0% |
| !!! | TCTTTAAGGGTGTTTTCCCT+GGG | - | chr5_2:63989963-63989982 | Msa0781470:CDS | 40.0% |
| ! | GATGATGATGTTTGAGGACA+TGG | - | chr5_2:63989990-63990009 | Msa0781470:CDS | 40.0% |
| ! | TTTGAGGACATGGGATTTTG+TGG | - | chr5_2:63990000-63990019 | Msa0781470:CDS | 40.0% |
| ! | CATGGGATTTTGTGGTGATT+TGG | - | chr5_2:63990008-63990027 | Msa0781470:CDS | 40.0% |
| ! | ATGCGTTTTGTGGTACACTT+GGG | - | chr5_2:63990031-63990050 | Msa0781470:CDS | 40.0% |
| AAGGGGATATTTCTTCTGTC+AGG | - | chr5_2:63990055-63990074 | Msa0781470:CDS | 40.0% | |
| GAACAAACCAAGGCTAAAGA+AGG | - | chr5_2:63990189-63990208 | Msa0781470:CDS | 40.0% | |
| AGAAGGAATTGATGCTGCAA+AGG | - | chr5_2:63990206-63990225 | Msa0781470:CDS | 40.0% | |
| AAGATGTCAAGAGCTCAAGA+TGG | - | chr5_2:63990261-63990280 | Msa0781470:CDS | 40.0% | |
| GTACATGCTGAAAATGATGG+AGG | - | chr5_2:63990293-63990312 | Msa0781470:CDS | 40.0% | |
| !! | AAGGCACAAGGCTTTGTTTA+TGG | - | chr5_2:63990321-63990340 | Msa0781470:CDS | 40.0% |
| !! | AGGCACAAGGCTTTGTTTAT+GGG | - | chr5_2:63990322-63990341 | Msa0781470:CDS | 40.0% |
| TTATGGGATAATTCCCGAGA+AGG | - | chr5_2:63990338-63990357 | Msa0781470:CDS | 40.0% | |
| TATGGGATAATTCCCGAGAA+GGG | - | chr5_2:63990339-63990358 | Msa0781470:CDS | 40.0% | |
| CATCTGACAATCTTCGTGAA+TGG | - | chr5_2:63990379-63990398 | Msa0781470:CDS | 40.0% | |
| ! | AATGGTGGAAGGATAAGGTT+CGG | - | chr5_2:63990397-63990416 | Msa0781470:CDS | 40.0% |
| TTGATACTTGGATATGGCAG+CGG | + | chr5_2:63990439-63990458 | None:intergenic | 40.0% | |
| TGCGTTATCTGCTTGATACT+TGG | + | chr5_2:63990451-63990470 | None:intergenic | 40.0% | |
| GCAATTCCAGGAAAGAATGA+TGG | - | chr5_2:63990468-63990487 | Msa0781470:CDS | 40.0% | |
| TTGCATCCATCATTCTTTCC+TGG | + | chr5_2:63990477-63990496 | None:intergenic | 40.0% | |
| TGTAATTCTTGCAAGGTGTG+TGG | + | chr5_2:63990516-63990535 | None:intergenic | 40.0% | |
| ACACACCTTGCAAGAATTAC+AGG | - | chr5_2:63990515-63990534 | Msa0781470:CDS | 40.0% | |
| TGTGTCCTGTAATTCTTGCA+AGG | + | chr5_2:63990523-63990542 | None:intergenic | 40.0% | |
| AGAATTACAGGACACAACCT+TGG | - | chr5_2:63990527-63990546 | Msa0781470:CDS | 40.0% | |
| GAATTACAGGACACAACCTT+GGG | - | chr5_2:63990528-63990547 | Msa0781470:CDS | 40.0% | |
| ATCTTTAGGCAAACCGATCT+GGG | + | chr5_2:63990664-63990683 | None:intergenic | 40.0% | |
| !! | ATCGGTTTGCCTAAAGATCA+AGG | - | chr5_2:63990666-63990685 | Msa0781470:CDS | 40.0% |
| TCATGAGGTTTCTTGTATGG+TGG | + | chr5_2:63990696-63990715 | None:intergenic | 40.0% | |
| TTGCGAATCTTGGCTATATC+AGG | + | chr5_2:63990774-63990793 | None:intergenic | 40.0% | |
| GGATTCCTCTTGATTGATGA+TGG | + | chr5_2:63990862-63990881 | None:intergenic | 40.0% | |
| CATCAATCAAGAGGAATCCT+TGG | - | chr5_2:63990863-63990882 | Msa0781470:CDS | 40.0% | |
| TGCAGTGAGTATGATGTTGA+TGG | - | chr5_2:63990960-63990979 | Msa0781470:CDS | 40.0% | |
| GCAGTGAGTATGATGTTGAT+GGG | - | chr5_2:63990961-63990980 | Msa0781470:CDS | 40.0% | |
| CAGTGAGTATGATGTTGATG+GGG | - | chr5_2:63990962-63990981 | Msa0781470:CDS | 40.0% | |
| ! | GATGAAGATTCTCGGGTTTT+CGG | + | chr5_2:63991019-63991038 | None:intergenic | 40.0% |
| TTGGATGGATGAAGATTCTC+GGG | + | chr5_2:63991026-63991045 | None:intergenic | 40.0% | |
| CATTCTATCCATCCCAAGAT+TGG | + | chr5_2:63991045-63991064 | None:intergenic | 40.0% | |
| ATCTTGGGATGGATAGAATG+AGG | - | chr5_2:63991045-63991064 | Msa0781470:CDS | 40.0% | |
| TCTTGGGATGGATAGAATGA+GGG | - | chr5_2:63991046-63991065 | Msa0781470:CDS | 40.0% | |
| GCAACCTTCTCATCAAATCA+AGG | - | chr5_2:63991085-63991104 | Msa0781470:CDS | 40.0% | |
| ! | TCTCCCTTGATTTGATGAGA+AGG | + | chr5_2:63991092-63991111 | None:intergenic | 40.0% |
| TTCTCATCAAATCAAGGGAG+AGG | - | chr5_2:63991091-63991110 | Msa0781470:CDS | 40.0% | |
| ACTTGGATTTCATTCGGAAG+AGG | - | chr5_2:63991123-63991142 | Msa0781470:intron | 40.0% | |
| ! | TGCTCGCATGTGTACATTTT+CGG | + | chr5_2:63991182-63991201 | None:intergenic | 40.0% |
| AAGACCTATCTTGAAAGGCA+AGG | + | chr5_2:63991232-63991251 | None:intergenic | 40.0% | |
| CTTTCAAGATAGGTCTTCCA+GGG | - | chr5_2:63991235-63991254 | Msa0781470:intron | 40.0% | |
| !! | GGACTGTTTCTGTTTCTATG+TGG | + | chr5_2:63991281-63991300 | None:intergenic | 40.0% |
| CCTCGGTAGCATGAAAATTA+GGG | + | chr5_2:63991319-63991338 | None:intergenic | 40.0% | |
| ACCTCGGTAGCATGAAAATT+AGG | + | chr5_2:63991320-63991339 | None:intergenic | 40.0% | |
| CCAGTTAAATCGAATGAAGG+TGG | + | chr5_2:63991410-63991429 | None:intergenic | 40.0% | |
| CCACCTTCATTCGATTTAAC+TGG | - | chr5_2:63991407-63991426 | Msa0781470:intron | 40.0% | |
| ! | TAAGGTCGCTGATCATTTTC+TGG | + | chr5_2:63991454-63991473 | None:intergenic | 40.0% |
| GTGTATCATAGCCTGACATA+AGG | + | chr5_2:63991472-63991491 | None:intergenic | 40.0% | |
| TCCTGTTGTTGCTGAATGAT+GGG | + | chr5_2:63991596-63991615 | None:intergenic | 40.0% | |
| ! | AAATCAGTTTGACCGGTTCA+AGG | - | chr5_2:63991673-63991692 | Msa0781470:intron | 40.0% |
| GGTTTCAAAAGGAGAGTTCA+TGG | + | chr5_2:63991699-63991718 | None:intergenic | 40.0% | |
| !! | GGCATCCTTTGATTTTAAGG+AGG | - | chr5_2:63991772-63991791 | Msa0781470:intron | 40.0% |
| AAGGAGGATCTACAACTACA+AGG | - | chr5_2:63991788-63991807 | Msa0781470:intron | 40.0% | |
| TAGACCCATCATCAAACACG+TGG | + | chr5_2:63989387-63989406 | None:intergenic | 45.0% | |
| !! | GGTGATTTGGATGCGTTTTG+TGG | - | chr5_2:63990021-63990040 | Msa0781470:CDS | 45.0% |
| ! | GATGCGTTTTGTGGTACACT+TGG | - | chr5_2:63990030-63990049 | Msa0781470:CDS | 45.0% |
| ! | TGCGTTTTGTGGTACACTTG+GGG | - | chr5_2:63990032-63990051 | Msa0781470:CDS | 45.0% |
| ! | TTTTGTGGTACACTTGGGGA+AGG | - | chr5_2:63990036-63990055 | Msa0781470:CDS | 45.0% |
| TTTGTGGTACACTTGGGGAA+GGG | - | chr5_2:63990037-63990056 | Msa0781470:CDS | 45.0% | |
| GCGACTGAAAGAACAAACCA+AGG | - | chr5_2:63990179-63990198 | Msa0781470:CDS | 45.0% | |
| GAATTGATGCTGCAAAGGCA+AGG | - | chr5_2:63990211-63990230 | Msa0781470:CDS | 45.0% | |
| ATGGAGGTTTGTAAGGCACA+AGG | - | chr5_2:63990309-63990328 | Msa0781470:CDS | 45.0% | |
| AATTCCCGAGAAGGGAAAAC+CGG | - | chr5_2:63990347-63990366 | Msa0781470:CDS | 45.0% | |
| ACGAAGATTGTCAGATGCTC+CGG | + | chr5_2:63990376-63990395 | None:intergenic | 45.0% | |
| CTGACAATCTTCGTGAATGG+TGG | - | chr5_2:63990382-63990401 | Msa0781470:CDS | 45.0% | |
| ! | CAATCTTCGTGAATGGTGGA+AGG | - | chr5_2:63990386-63990405 | Msa0781470:CDS | 45.0% |
| ! | TCGTGAATGGTGGAAGGATA+AGG | - | chr5_2:63990392-63990411 | Msa0781470:CDS | 45.0% |
| ! | AGGATAAGGTTCGGTTCGAT+AGG | - | chr5_2:63990406-63990425 | Msa0781470:CDS | 45.0% |
| ! | AAGGTTCGGTTCGATAGGAA+TGG | - | chr5_2:63990411-63990430 | Msa0781470:CDS | 45.0% |
| TGATACTTGGATATGGCAGC+GGG | + | chr5_2:63990438-63990457 | None:intergenic | 45.0% | |
| CAAGCAGATAACGCAATTCC+AGG | - | chr5_2:63990456-63990475 | Msa0781470:CDS | 45.0% | |
| TGCTGATAAGAGAGAACCCA+AGG | + | chr5_2:63990547-63990566 | None:intergenic | 45.0% | |
| TCTTTAGGCAAACCGATCTG+GGG | + | chr5_2:63990663-63990682 | None:intergenic | 45.0% | |
| GATCTTTAGGCAAACCGATC+TGG | + | chr5_2:63990665-63990684 | None:intergenic | 45.0% | |
| ! | GAGGTTTCTTGTATGGTGGA+GGG | + | chr5_2:63990692-63990711 | None:intergenic | 45.0% |
| TGAGGTTTCTTGTATGGTGG+AGG | + | chr5_2:63990693-63990712 | None:intergenic | 45.0% | |
| !! | TTGATTGATGATGGCAAGCC+AGG | + | chr5_2:63990853-63990872 | None:intergenic | 45.0% |
| GCTTGCCATCATCAATCAAG+AGG | - | chr5_2:63990854-63990873 | Msa0781470:CDS | 45.0% | |
| TGGATATAGTTCTCGAGCCA+AGG | + | chr5_2:63990883-63990902 | None:intergenic | 45.0% | |
| ! | TATGATGTTGATGGGGCTGA+CGG | - | chr5_2:63990969-63990988 | Msa0781470:CDS | 45.0% |
| CGAGTCAAACTTTGATGTGG+AGG | - | chr5_2:63990992-63991011 | Msa0781470:CDS | 45.0% | |
| TCATCCATCCAATCTTGGGA+TGG | - | chr5_2:63991034-63991053 | Msa0781470:CDS | 45.0% | |
| CTATCCATCCCAAGATTGGA+TGG | + | chr5_2:63991041-63991060 | None:intergenic | 45.0% | |
| CTTGGGATGGATAGAATGAG+GGG | - | chr5_2:63991047-63991066 | Msa0781470:CDS | 45.0% | |
| CCTGGAAGACCTATCTTGAA+AGG | + | chr5_2:63991237-63991256 | None:intergenic | 45.0% | |
| CCTTTCAAGATAGGTCTTCC+AGG | - | chr5_2:63991234-63991253 | Msa0781470:intron | 45.0% | |
| AGAAACAGAAACAGTCCTGC+AGG | - | chr5_2:63991284-63991303 | Msa0781470:intron | 45.0% | |
| AGAAACAGTCCTGCAGGTTA+TGG | - | chr5_2:63991290-63991309 | Msa0781470:intron | 45.0% | |
| ! | CCCTAATTTTCATGCTACCG+AGG | - | chr5_2:63991316-63991335 | Msa0781470:intron | 45.0% |
| GCAGGCTGAACTGTAGAATT+AGG | + | chr5_2:63991377-63991396 | None:intergenic | 45.0% | |
| GAAGGTGGAACTAAACTAGC+AGG | + | chr5_2:63991395-63991414 | None:intergenic | 45.0% | |
| ATGATCAGCGACCTTATGTC+AGG | - | chr5_2:63991458-63991477 | Msa0781470:intron | 45.0% | |
| GTCCTGTTGTTGCTGAATGA+TGG | + | chr5_2:63991597-63991616 | None:intergenic | 45.0% | |
| !! | GAATCAAGGAATGGTGATGG+AGG | - | chr5_2:63991628-63991647 | Msa0781470:intron | 45.0% |
| !!! | GGCAAACTTTTTTACTCGCG+AGG | - | chr5_2:63991649-63991668 | Msa0781470:intron | 45.0% |
| GCGAGGAAAATCAGTTTGAC+CGG | - | chr5_2:63991666-63991685 | Msa0781470:intron | 45.0% | |
| GAGGATCTACAACTACAAGG+AGG | - | chr5_2:63991791-63991810 | Msa0781470:intron | 45.0% | |
| CTACAACTACAAGGAGGAGT+AGG | - | chr5_2:63991797-63991816 | Msa0781470:intron | 45.0% | |
| ACTACAAGGAGGAGTAGGAA+TGG | - | chr5_2:63991802-63991821 | Msa0781470:intron | 45.0% | |
| TTGTGGTACACTTGGGGAAG+GGG | - | chr5_2:63990038-63990057 | Msa0781470:CDS | 50.0% | |
| TGGATGTGGATGAGCTTGAG+CGG | - | chr5_2:63990127-63990146 | Msa0781470:CDS | 50.0% | |
| AGTCTCAAGAACAGGCAAGG+AGG | - | chr5_2:63990235-63990254 | Msa0781470:CDS | 50.0% | |
| TCTTGCAAGGTGTGTGGAGT+TGG | + | chr5_2:63990510-63990529 | None:intergenic | 50.0% | |
| AGGCGTTTCCCATTGGAGAA+GGG | - | chr5_2:63990594-63990613 | Msa0781470:CDS | 50.0% | |
| GAGGATTGCCCTTCTCCAAT+GGG | + | chr5_2:63990605-63990624 | None:intergenic | 50.0% | |
| !! | GATAACGGGGGGCAATAATC+TGG | + | chr5_2:63990903-63990922 | None:intergenic | 50.0% |
| TACCTCCACCAGAGGATAAC+GGG | + | chr5_2:63990917-63990936 | None:intergenic | 50.0% | |
| GTACCTCCACCAGAGGATAA+CGG | + | chr5_2:63990918-63990937 | None:intergenic | 50.0% | |
| ! | TTATCCTCTGGTGGAGGTAC+TGG | - | chr5_2:63990918-63990937 | Msa0781470:CDS | 50.0% |
| !! | TGGTGGAGGTACTGGTTCTA+TGG | - | chr5_2:63990926-63990945 | Msa0781470:CDS | 50.0% |
| CGGCGAGTCAAACTTTGATG+TGG | - | chr5_2:63990989-63991008 | Msa0781470:CDS | 50.0% | |
| TGATGAGAAGGTTGCTGCAC+TGG | + | chr5_2:63991080-63991099 | None:intergenic | 50.0% | |
| GGGAGAGGTTGTCACAAACT+TGG | - | chr5_2:63991106-63991125 | Msa0781470:intron | 50.0% | |
| CTCGCCTTGCCTTTCAAGAT+AGG | - | chr5_2:63991225-63991244 | Msa0781470:intron | 50.0% | |
| ! | AACTGGGTTTGGAGTTTCGG+AGG | - | chr5_2:63991424-63991443 | Msa0781470:intron | 50.0% |
| !! | GCTGAATGATGGGCTGAGAA+AGG | + | chr5_2:63991553-63991572 | None:intergenic | 50.0% |
| !! | GCTGAATGATGGGCTGAGAA+AGG | + | chr5_2:63991553-63991572 | None:intergenic | 50.0% |
| GCCCATCATTCAGCAACAAC+AGG | - | chr5_2:63991559-63991578 | Msa0781470:intron | 50.0% | |
| ! | GAGAGTTCATGGCCTTGAAC+CGG | + | chr5_2:63991688-63991707 | None:intergenic | 50.0% |
| CAGGCAAACCGAGCCAGATT+CGG | - | chr5_2:63990074-63990093 | Msa0781470:CDS | 55.0% | |
| TCATCCTCGACCACCGAATC+TGG | + | chr5_2:63990090-63990109 | None:intergenic | 55.0% | |
| ATGTGGATGAGCTTGAGCGG+AGG | - | chr5_2:63990130-63990149 | Msa0781470:CDS | 55.0% | |
| ATGAGCTTGAGCGGAGGATG+TGG | - | chr5_2:63990136-63990155 | Msa0781470:CDS | 55.0% | |
| GGCAAGGCAGTCTCAAGAAC+AGG | - | chr5_2:63990227-63990246 | Msa0781470:CDS | 55.0% | |
| GGCAGTCTCAAGAACAGGCA+AGG | - | chr5_2:63990232-63990251 | Msa0781470:CDS | 55.0% | |
| !!! | GTCACCGGTTTTCCCTTCTC+GGG | + | chr5_2:63990354-63990373 | None:intergenic | 55.0% |
| !!! | GGTCACCGGTTTTCCCTTCT+CGG | + | chr5_2:63990355-63990374 | None:intergenic | 55.0% |
| GAGAAGGGAAAACCGGTGAC+CGG | - | chr5_2:63990354-63990373 | Msa0781470:CDS | 55.0% | |
| TTGTCAGATGCTCCGGTCAC+CGG | + | chr5_2:63990369-63990388 | None:intergenic | 55.0% | |
| GGTGTGTGGAGTTGGACCTA+TGG | + | chr5_2:63990502-63990521 | None:intergenic | 55.0% | |
| ! | AATGGGAAACGCCTCTGAGG+AGG | + | chr5_2:63990588-63990607 | None:intergenic | 55.0% |
| !! | TCCTCAGAGGCGTTTCCCAT+TGG | - | chr5_2:63990587-63990606 | Msa0781470:CDS | 55.0% |
| TCCAATGGGAAACGCCTCTG+AGG | + | chr5_2:63990591-63990610 | None:intergenic | 55.0% | |
| ! | GAGGCGTTTCCCATTGGAGA+AGG | - | chr5_2:63990593-63990612 | Msa0781470:CDS | 55.0% |
| GGAGGATTGCCCTTCTCCAA+TGG | + | chr5_2:63990606-63990625 | None:intergenic | 55.0% | |
| AGAAGGGCAATCCTCCACCA+TGG | - | chr5_2:63990610-63990629 | Msa0781470:CDS | 55.0% | |
| GGTGGAGGGCCTTGATCTTT+AGG | + | chr5_2:63990678-63990697 | None:intergenic | 55.0% | |
| CCTCACGAGCTTGCGAATCT+TGG | + | chr5_2:63990784-63990803 | None:intergenic | 55.0% | |
| CCAAGATTCGCAAGCTCGTG+AGG | - | chr5_2:63990781-63990800 | Msa0781470:CDS | 55.0% | |
| AAGCCAGGTTGCGCTTTCCT+TGG | + | chr5_2:63990838-63990857 | None:intergenic | 55.0% | |
| TATTGCCCCCCGTTATCCTC+TGG | - | chr5_2:63990906-63990925 | Msa0781470:CDS | 55.0% | |
| ACCTCCACCAGAGGATAACG+GGG | + | chr5_2:63990916-63990935 | None:intergenic | 55.0% | |
| AGAACCAGTACCTCCACCAG+AGG | + | chr5_2:63990925-63990944 | None:intergenic | 55.0% | |
| GCTTCGCTGTAAGCGCATTG+AGG | + | chr5_2:63991206-63991225 | None:intergenic | 55.0% | |
| TTAGGGTCGCCATAACCTGC+AGG | + | chr5_2:63991302-63991321 | None:intergenic | 55.0% | |
| ! | GGGTTTGGAGTTTCGGAGGA+CGG | - | chr5_2:63991428-63991447 | Msa0781470:intron | 55.0% |
| GCAAACCGAGCCAGATTCGG+TGG | - | chr5_2:63990077-63990096 | Msa0781470:CDS | 60.0% | |
| CTCGACCACCGAATCTGGCT+CGG | + | chr5_2:63990085-63990104 | None:intergenic | 60.0% | |
| AGCTTGAGCGGAGGATGTGG+AGG | - | chr5_2:63990139-63990158 | Msa0781470:CDS | 60.0% | |
| GCTTGAGCGGAGGATGTGGA+GGG | - | chr5_2:63990140-63990159 | Msa0781470:CDS | 60.0% | |
| AGCACTGCGATCCTCCTCAG+AGG | - | chr5_2:63990574-63990593 | Msa0781470:CDS | 60.0% | |
| AGGGCAATCCTCCACCATGG+TGG | - | chr5_2:63990613-63990632 | Msa0781470:CDS | 60.0% | |
| CACCAGTCTTCAGTCCCGGT+TGG | + | chr5_2:63990639-63990658 | None:intergenic | 60.0% | |
| CAACCGGGACTGAAGACTGG+TGG | - | chr5_2:63990637-63990656 | Msa0781470:CDS | 60.0% | |
| GAAGACTGGTGGCCCCAGAT+CGG | - | chr5_2:63990648-63990667 | Msa0781470:CDS | 60.0% | |
| ! | CAGCCAAGGAAAGCGCAACC+TGG | - | chr5_2:63990832-63990851 | Msa0781470:CDS | 60.0% |
| !! | CTCCACCAGAGGATAACGGG+GGG | + | chr5_2:63990914-63990933 | None:intergenic | 60.0% |
| ! | CCTCCACCAGAGGATAACGG+GGG | + | chr5_2:63990915-63990934 | None:intergenic | 60.0% |
| !! | CGAGCCAGATTCGGTGGTCG+AGG | - | chr5_2:63990083-63990102 | Msa0781470:CDS | 65.0% |
| CCTCCACCATGGTGGCCAAC+CGG | - | chr5_2:63990621-63990640 | Msa0781470:CDS | 65.0% | |
| CTCCACCATGGTGGCCAACC+GGG | - | chr5_2:63990622-63990641 | Msa0781470:CDS | 65.0% | |
| ! | TCAGTCCCGGTTGGCCACCA+TGG | + | chr5_2:63990630-63990649 | None:intergenic | 65.0% |
| GGCCAACCGGGACTGAAGAC+TGG | - | chr5_2:63990634-63990653 | Msa0781470:CDS | 65.0% | |
| GGGCCACCAGTCTTCAGTCC+CGG | + | chr5_2:63990643-63990662 | None:intergenic | 65.0% | |
| TGCCCCCCGTTATCCTCTGG+TGG | - | chr5_2:63990909-63990928 | Msa0781470:CDS | 65.0% | |
| CCCCCGTTATCCTCTGGTGG+AGG | - | chr5_2:63990912-63990931 | Msa0781470:CDS | 65.0% | |
| ! | CCGGTTGGCCACCATGGTGG+AGG | + | chr5_2:63990624-63990643 | None:intergenic | 70.0% |
| ! | GTCCCGGTTGGCCACCATGG+TGG | + | chr5_2:63990627-63990646 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 63989226 | 63991868 | 63989226 | ID=Msa0781470;Name=Msa0781470 |
| chr5_2 | mRNA | 63989226 | 63991868 | 63989226 | ID=Msa0781470-mRNA-1;Parent=Msa0781470;Name=Msa0781470-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|0.66|1|1|3|0|636 |
| chr5_2 | exon | 63991864 | 63991868 | 63991864 | ID=Msa0781470-mRNA-1:exon:19048;Parent=Msa0781470-mRNA-1 |
| chr5_2 | exon | 63991247 | 63991254 | 63991247 | ID=Msa0781470-mRNA-1:exon:19047;Parent=Msa0781470-mRNA-1 |
| chr5_2 | exon | 63989226 | 63991123 | 63989226 | ID=Msa0781470-mRNA-1:exon:19046;Parent=Msa0781470-mRNA-1 |
| chr5_2 | CDS | 63991864 | 63991868 | 63991864 | ID=Msa0781470-mRNA-1:cds;Parent=Msa0781470-mRNA-1 |
| chr5_2 | CDS | 63991247 | 63991254 | 63991247 | ID=Msa0781470-mRNA-1:cds;Parent=Msa0781470-mRNA-1 |
| chr5_2 | CDS | 63989226 | 63991123 | 63989226 | ID=Msa0781470-mRNA-1:cds;Parent=Msa0781470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
