AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0781610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0781610 MtrunA17_Chr5g0440741 90.323 279 22 2 355 632 15 289 3.45e-171 489
Msa0781610 MtrunA17_Chr5g0440731 89.085 284 21 4 355 632 15 294 1.19e-166 477
Msa0781610 MtrunA17_Chr5g0440751 90.857 175 16 0 1 175 1 175 4.87e-105 316
Msa0781610 MtrunA17_Chr5g0440751 70.556 180 18 3 176 354 17 162 2.13e-69 223
Msa0781610 MtrunA17_Chr5g0409841 65.957 235 65 7 357 580 1 231 2.40e-85 266
Msa0781610 MtrunA17_Chr5g0440721 82.209 163 16 1 5 167 12 161 6.66e-85 263
Msa0781610 MtrunA17_Chr5g0440721 65.000 180 15 3 176 354 24 156 1.84e-62 204
Msa0781610 MtrunA17_Chr5g0440821 72.038 211 15 3 9 175 23 233 3.05e-83 280
Msa0781610 MtrunA17_Chr5g0409951 64.417 163 24 3 176 329 113 250 4.46e-54 185
Msa0781610 MtrunA17_Chr5g0409951 61.842 152 41 2 3 137 99 250 6.16e-45 160
Msa0781610 MtrunA17_Chr5g0409951 56.701 97 28 3 355 445 22 110 2.16e-20 91.3
Msa0781610 MtrunA17_Chr5g0409831 42.761 297 81 8 357 632 1 229 6.68e-54 184
Msa0781610 MtrunA17_Chr5g0429521 58.228 79 29 2 442 519 134 209 3.58e-22 97.8
Msa0781610 MtrunA17_Chr1g0162081 57.692 78 28 3 438 513 119 193 4.40e-22 97.1
Msa0781610 MtrunA17_Chr3g0104071 64.179 67 21 1 442 508 149 212 6.41e-22 97.1
Msa0781610 MtrunA17_Chr1g0210471 62.687 67 22 1 442 508 126 189 3.65e-21 93.2
Msa0781610 MtrunA17_Chr7g0241761 46.087 115 48 3 442 554 142 244 3.69e-21 94.7
Msa0781610 MtrunA17_Chr5g0436501 56.790 81 33 2 429 508 113 192 5.11e-21 93.6
Msa0781610 MtrunA17_Chr4g0062741 53.165 79 32 3 438 514 135 210 5.10e-20 91.3
Msa0781610 MtrunA17_Chr8g0365011 45.283 106 45 2 422 515 74 178 2.98e-19 88.6
Msa0781610 MtrunA17_Chr5g0432921 42.241 116 64 2 397 512 72 184 1.73e-18 84.7
Msa0781610 MtrunA17_Chr3g0135671 48.571 70 36 0 442 511 93 162 1.90e-18 85.1
Msa0781610 MtrunA17_Chr8g0364731 55.224 67 29 1 449 515 10 75 4.86e-18 82.4
Msa0781610 MtrunA17_Chr2g0331031 53.846 65 27 1 442 506 111 172 1.07e-17 85.1
Msa0781610 MtrunA17_Chr4g0055931 51.515 66 27 2 442 506 97 158 7.80e-17 82.0
Msa0781610 MtrunA17_Chr5g0409941 43.802 121 20 2 7 124 31 106 1.33e-16 75.9
Msa0781610 MtrunA17_Chr5g0409941 83.333 36 6 0 176 211 44 79 1.82e-11 61.2
Msa0781610 MtrunA17_Chr5g0409941 81.818 33 6 0 284 316 74 106 8.07e-11 59.7
Msa0781610 MtrunA17_Chr6g0488471 52.308 65 28 1 442 506 99 160 5.04e-16 79.0
Msa0781610 MtrunA17_Chr8g0389241 65.217 46 16 0 442 487 107 152 5.14e-16 79.0
Msa0781610 MtrunA17_Chr5g0415191 67.391 46 15 0 442 487 104 149 5.80e-16 79.3
Msa0781610 MtrunA17_Chr4g0059701 68.889 45 14 0 442 486 86 130 7.73e-16 78.6
Msa0781610 MtrunA17_Chr5g0432941 39.200 125 54 3 397 512 73 184 1.16e-15 76.6
Msa0781610 MtrunA17_Chr1g0192061 39.683 126 55 7 408 515 13 135 3.31e-15 74.3
Msa0781610 MtrunA17_Chr6g0452791 54.545 55 25 0 442 496 82 136 4.30e-15 73.6
Msa0781610 MtrunA17_Chr3g0092621 42.857 70 37 1 442 511 86 152 2.14e-13 68.9
Msa0781610 MtrunA17_Chr3g0113121 52.778 72 30 2 441 508 96 167 2.60e-13 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0781610 AT5G58900.1 41.176 136 64 3 442 572 143 267 2.51e-23 100
Msa0781610 AT5G08520.1 56.790 81 31 2 438 517 115 192 1.88e-22 98.6
Msa0781610 AT5G04760.1 60.526 76 27 1 433 508 92 164 2.52e-22 96.3
Msa0781610 AT5G01200.1 61.194 67 23 1 442 508 148 211 4.40e-21 94.0
Msa0781610 AT2G38090.1 57.692 78 28 3 435 510 135 209 1.92e-20 92.8
Msa0781610 AT1G49010.1 53.659 82 33 3 438 517 131 209 5.57e-20 91.7
Msa0781610 AT5G61620.1 43.651 126 51 5 434 551 101 214 4.17e-19 89.4
Msa0781610 AT3G11280.2 43.443 122 50 5 442 552 129 242 2.56e-18 85.9
Msa0781610 AT3G11280.1 43.443 122 50 5 442 552 129 242 2.56e-18 85.9
Msa0781610 AT5G23650.1 52.632 76 33 1 442 517 122 194 4.95e-18 86.3
Msa0781610 AT3G10580.2 39.552 134 63 5 429 552 77 202 1.14e-17 83.6
Msa0781610 AT3G10580.1 38.028 142 70 5 429 560 77 210 1.50e-17 84.0
Msa0781610 AT5G05790.2 55.000 80 28 3 438 512 128 204 2.63e-17 83.2
Msa0781610 AT5G05790.1 55.000 80 28 3 438 512 128 204 2.63e-17 83.2
Msa0781610 AT5G47390.1 45.745 94 44 4 442 532 98 187 4.35e-17 84.0
Msa0781610 AT1G70000.1 67.391 46 15 0 442 487 100 145 1.90e-16 80.1
Msa0781610 AT1G70000.2 67.391 46 15 0 442 487 100 145 1.90e-16 80.1
Msa0781610 AT5G56840.1 55.172 58 26 0 442 499 93 150 2.43e-16 79.3
Msa0781610 AT4G09450.1 54.412 68 28 1 442 509 93 157 3.81e-16 77.8
Msa0781610 AT1G74840.2 68.889 45 14 0 442 486 98 142 1.38e-15 77.0
Msa0781610 AT3G16350.1 65.217 46 16 0 442 487 139 184 1.41e-15 79.7
Msa0781610 AT1G74840.1 68.889 45 14 0 442 486 98 142 2.26e-15 77.0
Msa0781610 AT1G19000.2 68.889 45 14 0 442 486 104 148 3.52e-15 77.0
Msa0781610 AT1G19000.1 68.889 45 14 0 442 486 104 148 3.52e-15 77.0
Msa0781610 AT3G10590.1 50.000 68 30 2 442 509 113 176 1.80e-12 67.4

Find 179 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCCATATCTTTCACATTT+TGG 0.099316 5_2:-64174507 None:intergenic
TCACCTTGTTCTTGGGTATT+TGG 0.139349 5_2:-64172398 None:intergenic
TCAACATGATTCATAGGTTT+TGG 0.219569 5_2:-64171668 None:intergenic
TCAACATGATTCATAGGTTT+TGG 0.219569 5_2:-64172521 None:intergenic
CCTGCTGCTGCCGGGGATAC+AGG 0.250754 5_2:-64172272 None:intergenic
CTGTCCAATGCCCTTTCCTT+GGG 0.257949 5_2:-64174134 None:intergenic
TCCTATAGCTCCTTCTGTTC+AGG 0.275418 5_2:+64172577 Msa0781610:CDS
CTTGGGGCATGACTTTCTTC+TGG 0.281577 5_2:-64174117 None:intergenic
TCCTAGAGCTCCTTCTGTTC+AGG 0.288148 5_2:+64171724 Msa0781610:CDS
CCTGCTGCAGCCGGGGATAC+AGG 0.292706 5_2:-64173219 None:intergenic
TTCTCAAGTTTGTTCATATC+AGG 0.295923 5_2:-64174889 None:intergenic
TCACATGGTCACCTTGTTCT+TGG 0.300461 5_2:-64172406 None:intergenic
TCTGTCCAATGCCCTTTCCT+TGG 0.314383 5_2:-64174135 None:intergenic
CTGAACATGTTTGGCATCAT+TGG 0.316454 5_2:-64172321 None:intergenic
TGGGTATTTGGCCTTCCATT+TGG 0.324095 5_2:-64172386 None:intergenic
TATGCTTTCCCACCTGGTTC+AGG 0.329227 5_2:+64173168 Msa0781610:CDS
CCATTTGTGTTGTTGCGCTT+GGG 0.329671 5_2:-64173042 None:intergenic
TGGATATTTGGCCTTCCATT+TGG 0.341904 5_2:-64173333 None:intergenic
CCACCAAAATGTGAAAGATA+TGG 0.352224 5_2:+64174504 Msa0781610:CDS
CACATGGTCACCTTGTTCTT+GGG 0.355028 5_2:-64172405 None:intergenic
GCCATTTGTGTTGTTGCGCT+TGG 0.355090 5_2:-64173043 None:intergenic
TAGAAGAAATCAAACGGTTC+TGG 0.355215 5_2:+64172967 Msa0781610:intron
CCTGCATATGCTTTCCCACC+TGG 0.358776 5_2:+64173162 Msa0781610:CDS
TGAGAAGATGCGCAACTTGT+TGG 0.359768 5_2:+64174906 Msa0781610:CDS
CACCGGAGGCTGAACATGTT+TGG 0.362724 5_2:-64172330 None:intergenic
CACCGGAGGCTGAACATGTT+TGG 0.362724 5_2:-64173277 None:intergenic
ACATTCTCAACATGATTCAT+AGG 0.366509 5_2:-64171674 None:intergenic
ACATTCTCAACATGATTCAT+AGG 0.366509 5_2:-64172527 None:intergenic
GATGCTCCTGTGTTGGTTGT+TGG 0.370634 5_2:+64172461 Msa0781610:CDS
TTGGATAAAGCAACACCAAC+TGG 0.371101 5_2:-64174852 None:intergenic
GATGTTCCTGTGTTGGTTGT+TGG 0.372353 5_2:+64171608 Msa0781610:CDS
AAACAGAAATCAAACGGTTC+TGG 0.380690 5_2:+64172116 Msa0781610:intron
TGCTATGCTCAGAGGGATCT+TGG 0.382368 5_2:-64173960 None:intergenic
GTGTTGTTGCGCTTGGGGCC+TGG 0.396203 5_2:-64173036 None:intergenic
AACCTTGTCCTGCTGCTGCC+GGG 0.402092 5_2:-64172280 None:intergenic
TTCTGTGCCTAGTGTTGGTC+AGG 0.402578 5_2:+64171697 Msa0781610:CDS
TTCTGTGCCTAGTGTTGGTC+AGG 0.402578 5_2:+64172550 Msa0781610:CDS
GGACGAAAATTCGGAGCAAC+AGG 0.414645 5_2:-64173111 None:intergenic
CTGAACATGTTTGGCATCAA+TGG 0.415429 5_2:-64173268 None:intergenic
TATGCTATTGATTATCCAAA+TGG 0.421444 5_2:+64173318 Msa0781610:CDS
CCCAAGCGCAACAACACAAA+TGG 0.425501 5_2:+64173042 Msa0781610:CDS
AAATATTTCAAAAGAATTTG+TGG 0.425853 5_2:+64174432 Msa0781610:CDS
TCCTTTAGTCACTGCTCCTA+TGG 0.430956 5_2:+64174762 Msa0781610:CDS
GGATTCTCGCCATTAGGATA+AGG 0.435944 5_2:-64172245 None:intergenic
TATGCTGTTAATTATCCAAA+TGG 0.436533 5_2:+64172371 Msa0781610:CDS
GGATTCTCACCATTAGGATA+AGG 0.437709 5_2:-64173192 None:intergenic
GGCTTAGGATTCTCGCCATT+AGG 0.439906 5_2:-64172251 None:intergenic
TGTGAAAGATATGGAGAAGA+AGG 0.441203 5_2:+64174513 Msa0781610:CDS
GAACAACAACAGGAGAAAAC+TGG 0.441684 5_2:+64173985 Msa0781610:CDS
GGCTTAGGATTCTCACCATT+AGG 0.442479 5_2:-64173198 None:intergenic
ATTTGTGTTACTGTTGCGCT+TGG 0.444589 5_2:-64172192 None:intergenic
AATCGGTTCTACAATTCCTT+CGG 0.444800 5_2:+64174717 Msa0781610:CDS
GGTGATGGCATCTTATTCTT+CGG 0.445274 5_2:-64172149 None:intergenic
ATTGTCCTTGTTGTTTAAGA+TGG 0.446908 5_2:-64174815 None:intergenic
AAACCTTGTCCTGCTGCTGC+CGG 0.447814 5_2:-64172281 None:intergenic
ACCACCCGACTCAATGATAT+CGG 0.449690 5_2:-64174010 None:intergenic
TTACTGTTGCGCTTGGGACC+TGG 0.453629 5_2:-64172185 None:intergenic
CCTGTATCCCCGGCTGCAGC+AGG 0.462309 5_2:+64173219 Msa0781610:CDS
TTGGTGTTGCTTTATCCAAT+CGG 0.462526 5_2:+64174856 Msa0781610:CDS
CCTGTATCCCCGGCAGCAGC+AGG 0.464792 5_2:+64172272 Msa0781610:CDS
GGTTCAGGACCTTATCCTAA+TGG 0.464993 5_2:+64173183 Msa0781610:CDS
AACCTTGTCCTGCTGCAGCC+GGG 0.469596 5_2:-64173227 None:intergenic
GGTACCCTAGGACGAAAATT+CGG 0.472201 5_2:-64173120 None:intergenic
GCTCATTTAAATCAATTTGA+AGG 0.475975 5_2:-64173927 None:intergenic
TCAAATTGATTTAAATGAGC+CGG 0.477484 5_2:+64173930 Msa0781610:CDS
AAACCTTGTCCTGCTGCAGC+CGG 0.478250 5_2:-64173228 None:intergenic
GCATAGCATGGAACAACAAC+AGG 0.485938 5_2:+64173975 Msa0781610:CDS
ACAGGCGGCTGCTGATGATA+AGG 0.487188 5_2:-64173093 None:intergenic
GGCTTTCGATAGCGCGGTGA+TGG 0.487676 5_2:-64172164 None:intergenic
AGAAAGAGCTGGCGAAGACT+TGG 0.491824 5_2:-64171633 None:intergenic
AGAAAGAGCCGGCGAAGACT+TGG 0.492169 5_2:-64172486 None:intergenic
GCTGCCGGGGATACAGGCTT+AGG 0.492601 5_2:-64172266 None:intergenic
AAAGTCATGCCCCAAGGAAA+GGG 0.493395 5_2:+64174124 Msa0781610:CDS
ATGTTGTGCTTGCTGCCAAT+CGG 0.496477 5_2:+64174700 Msa0781610:CDS
ACGGTTCTGGAAATTTCAAT+CGG 0.496809 5_2:+64172980 Msa0781610:CDS
GTGACGATGCCTTATCCTAA+TGG 0.498221 5_2:+64172236 Msa0781610:CDS
GAATCCTAAGCCTGTATCCC+CGG 0.504373 5_2:+64172262 Msa0781610:CDS
GCAGCCGGGGATACAGGCTT+AGG 0.505668 5_2:-64173213 None:intergenic
GAATCCTAAGCCTGTATCCC+CGG 0.509484 5_2:+64173209 Msa0781610:CDS
CATTTGTGTTGTTGCGCTTG+GGG 0.510276 5_2:-64173041 None:intergenic
TGCCAAACATGTTCAGCCTC+CGG 0.511829 5_2:+64173275 Msa0781610:CDS
TGCCAAACATGTTCAGCCTC+CGG 0.513848 5_2:+64172328 Msa0781610:CDS
TAATTAACAGCATAAGCATT+CGG 0.516489 5_2:-64172362 None:intergenic
TCACCGCGCTATCGAAAGCC+AGG 0.521803 5_2:+64172167 Msa0781610:CDS
TTTGTGTTACTGTTGCGCTT+GGG 0.522204 5_2:-64172191 None:intergenic
GGAGTCTCATGTTGTTCCAT+AGG 0.524662 5_2:-64174778 None:intergenic
ATGCCCCAAGGAAAGGGCAT+TGG 0.524782 5_2:+64174130 Msa0781610:CDS
TCACCATGCTATCGAAAGCC+AGG 0.525059 5_2:+64173018 Msa0781610:CDS
GCATGGCTAGCAATTTGAGT+TGG 0.525594 5_2:-64174466 None:intergenic
TAGTGTTGATGCTCCTGTGT+TGG 0.526887 5_2:+64172454 Msa0781610:CDS
GAAAGTCATGCCCCAAGGAA+AGG 0.527463 5_2:+64174123 Msa0781610:CDS
GTAATTATGGTGAGGATCAG+AGG 0.529504 5_2:+64171548 None:intergenic
ATTAAATAGAAGAAATCAAA+CGG 0.530787 5_2:+64172961 Msa0781610:intron
GGCACCGATATCATTGAGTC+GGG 0.531762 5_2:+64174006 Msa0781610:CDS
TAATCAATAGCATAAGCATT+CGG 0.533630 5_2:-64173309 None:intergenic
CAAGGTGACCATGTGAATCA+TGG 0.533701 5_2:+64172413 Msa0781610:CDS
GTGATTAAACAGAAATCAAA+CGG 0.535847 5_2:+64172110 Msa0781610:intron
TGTTCCATGCTATGCTCAGA+GGG 0.536332 5_2:-64173967 None:intergenic
ACCTGAACAGAAGGAGCTAT+AGG 0.539393 5_2:-64172578 None:intergenic
AAGCGCAACAGTAACACAAA+TGG 0.541697 5_2:+64172194 Msa0781610:CDS
TGTTGGAACCAAGTCTTCGC+CGG 0.542383 5_2:+64172478 Msa0781610:CDS
TGATAAGGCCTCGTCGCCAC+AGG 0.544440 5_2:-64173078 None:intergenic
GGCTTTCGATAGCATGGTGA+TGG 0.547691 5_2:-64173015 None:intergenic
ATCAGAGTTTAGAATTGCAA+TGG 0.548775 5_2:-64174034 None:intergenic
AATGTTTCTGTGCCTAGTGT+TGG 0.550067 5_2:+64171692 Msa0781610:CDS
AATGTTTCTGTGCCTAGTGT+TGG 0.550067 5_2:+64172545 Msa0781610:CDS
GTCTGTTGCATTCCTTGAGG+AGG 0.550846 5_2:-64174649 None:intergenic
TCCCCGGCTGCAGCAGGACA+AGG 0.550986 5_2:+64173225 Msa0781610:CDS
GGGCCTGGCTTTCGATAGCA+TGG 0.552238 5_2:-64173021 None:intergenic
TTTAAGATGGCAGTGTCTTG+AGG 0.553601 5_2:-64174802 None:intergenic
ATTTAAATCAATTTGAAGGA+GGG 0.554059 5_2:-64173923 None:intergenic
AACAAACGAACCTGAACAGA+AGG 0.557127 5_2:-64172587 None:intergenic
TCCATAGGAGCAGTGACTAA+AGG 0.557140 5_2:-64174763 None:intergenic
TTCGGATCTCCTTGCACCGG+AGG 0.558249 5_2:-64172344 None:intergenic
TTCGGATCTCCTTGCACCGG+AGG 0.558249 5_2:-64173291 None:intergenic
TGTCCAATGCCCTTTCCTTG+GGG 0.558952 5_2:-64174133 None:intergenic
ATGTGAGGTGGAGGTACCCT+AGG 0.561843 5_2:-64173132 None:intergenic
ACCTGAACAGAAGGAGCTCT+AGG 0.562137 5_2:-64171725 None:intergenic
CATGTTCAGCCTCCGGTGCA+AGG 0.562364 5_2:+64172335 Msa0781610:CDS
CATGTTCAGCCTCCGGTGCA+AGG 0.562364 5_2:+64173282 Msa0781610:CDS
TTGGCATCATTGGCATGAGC+AGG 0.563369 5_2:-64172311 None:intergenic
AACAATCGAACCTGAACAGA+AGG 0.565912 5_2:-64171734 None:intergenic
ACCTTGTCCTGCTGCTGCCG+GGG 0.566255 5_2:-64172279 None:intergenic
TTGTTCCATGCTATGCTCAG+AGG 0.567759 5_2:-64173968 None:intergenic
GAGGGATCTTGGACTGAAGC+CGG 0.570243 5_2:-64173949 None:intergenic
CATTTAAATCAATTTGAAGG+AGG 0.570848 5_2:-64173924 None:intergenic
TCCCCGGCAGCAGCAGGACA+AGG 0.572616 5_2:+64172278 Msa0781610:CDS
GGATAAGGCATCGTCACCAC+AGG 0.573697 5_2:-64172230 None:intergenic
TCAGGAAGTGTAGAACCGAT+TGG 0.577352 5_2:-64174871 None:intergenic
ACCTTGTCCTGCTGCAGCCG+GGG 0.578501 5_2:-64173226 None:intergenic
AAGTGTTGATGTTCCTGTGT+TGG 0.580284 5_2:+64171601 Msa0781610:CDS
GCATCATTGGCATGAGCAGG+TGG 0.581815 5_2:-64172308 None:intergenic
TGGCACCGATATCATTGAGT+CGG 0.583638 5_2:+64174005 Msa0781610:CDS
GGAACAGCAATGTGAGGTGG+AGG 0.583732 5_2:-64173141 None:intergenic
GAAGAAAAGTAATTATGGTG+AGG 0.586984 5_2:+64171540 None:intergenic
ATTGGCAGCAAGCACAACAT+AGG 0.587278 5_2:-64174697 None:intergenic
GTTTGAGCATGAGAAAGAGC+TGG 0.587648 5_2:-64171644 None:intergenic
CCAGGTGGGAAAGCATATGC+AGG 0.588904 5_2:-64173162 None:intergenic
TTAGGATAAGGTCCTGAACC+AGG 0.588996 5_2:-64173180 None:intergenic
ACACTTTGTAGCTCAACTGA+AGG 0.589388 5_2:-64174622 None:intergenic
GGAGCAACCTGACCAACACT+AGG 0.591510 5_2:-64171704 None:intergenic
GTTTGAGCATCAGAAAGAGC+CGG 0.593248 5_2:-64172497 None:intergenic
AGATCCCTCTGAGCATAGCA+TGG 0.596307 5_2:+64173963 Msa0781610:CDS
TGGATAAAGCAACACCAACT+GGG 0.597123 5_2:-64174851 None:intergenic
CTGTTAATTATCCAAATGGA+AGG 0.601168 5_2:+64172375 Msa0781610:CDS
GAAGGAATTGTAGAACCGAT+TGG 0.605792 5_2:-64174715 None:intergenic
CGAAAATTCGGAGCAACAGG+CGG 0.606908 5_2:-64173108 None:intergenic
CACTGCCATCTTAAACAACA+AGG 0.607403 5_2:+64174810 Msa0781610:CDS
ATTAAACAAGAATGACACAT+TGG 0.608999 5_2:+64174567 Msa0781610:CDS
GCATCAATGGCATGAGCAGG+TGG 0.609092 5_2:-64173255 None:intergenic
GGAGCAACCTGACCAACACT+AGG 0.611273 5_2:-64172557 None:intergenic
ACCGATATCATTGAGTCGGG+TGG 0.615037 5_2:+64174009 Msa0781610:CDS
CTATTGATTATCCAAATGGA+AGG 0.618008 5_2:+64173322 Msa0781610:CDS
GCATTCGGATCTCCTTGCAC+CGG 0.618195 5_2:-64172347 None:intergenic
GCATTCGGATCTCCTTGCAC+CGG 0.618195 5_2:-64173294 None:intergenic
CAAAGTGTGATTCCTCCTCA+AGG 0.618896 5_2:+64174637 Msa0781610:CDS
TTCACTTTCCTGTGGCGACG+AGG 0.622515 5_2:+64173070 Msa0781610:CDS
TTGGCATCAATGGCATGAGC+AGG 0.623729 5_2:-64173258 None:intergenic
ATCGTCACCACAGGAAAGTG+AGG 0.627432 5_2:-64172221 None:intergenic
CAGAAGAAAGTCATGCCCCA+AGG 0.636413 5_2:+64174118 Msa0781610:CDS
GCAGGAACAGCAATGTGAGG+TGG 0.639750 5_2:-64173144 None:intergenic
GTGACCATGTGAATCATGGT+CGG 0.644274 5_2:+64172417 Msa0781610:CDS
AAGATGGCAGTGTCTTGAGG+AGG 0.644314 5_2:-64174799 None:intergenic
AGGCCAAATACCCAAGAACA+AGG 0.645778 5_2:+64172395 Msa0781610:CDS
TGACAACTTGCAAACCCAGT+TGG 0.648867 5_2:+64174837 Msa0781610:CDS
AACACAGGAGCATCAACACT+AGG 0.653659 5_2:-64172452 None:intergenic
ATTATGGTGAGGATCAGAGG+AGG 0.653905 5_2:+64171551 None:intergenic
TGGCACGCTTCACTTTCCTG+TGG 0.655390 5_2:+64173062 Msa0781610:CDS
GATAAGGTCCTGAACCAGGT+GGG 0.657071 5_2:-64173176 None:intergenic
AAGGAAAGGGCATTGGACAG+AGG 0.658250 5_2:+64174137 Msa0781610:CDS
GGATCAGAGGAGGAAAGCAG+AGG 0.659593 5_2:+64171561 Msa0781610:CDS
TGGCATGCCTCACTTTCCTG+TGG 0.662752 5_2:+64172214 Msa0781610:CDS
GGACCTGGCTTTCGATAGCG+CGG 0.664348 5_2:-64172170 None:intergenic
TTGGTTCCAACAACCAACAC+AGG 0.665985 5_2:-64171614 None:intergenic
TTGGTTCCAACAACCAACAC+AGG 0.665985 5_2:-64172467 None:intergenic
TGTGTCTGTTGCATTCCTTG+AGG 0.673315 5_2:-64174652 None:intergenic
TATGCAGGAACAGCAATGTG+AGG 0.684479 5_2:-64173147 None:intergenic
GGATAAGGTCCTGAACCAGG+TGG 0.691288 5_2:-64173177 None:intergenic
GATGCCGACCATGATTCACA+TGG 0.766610 5_2:-64172421 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATAGAAGAAATCAAA+CGG + chr5_2:64172961-64172980 Msa0781610:intron 15.0%
!! AAAAAATAACTTTCAAACAT+AGG - chr5_2:64174201-64174220 None:intergenic 15.0%
!! AAATATTTCAAAAGAATTTG+TGG + chr5_2:64174432-64174451 Msa0781610:CDS 15.0%
!! ATTATGATATCTTCTTGTTA+TGG + chr5_2:64173622-64173641 Msa0781610:intron 20.0%
!! TGAAAGTTAAGAAAATTACT+TGG - chr5_2:64173673-64173692 None:intergenic 20.0%
!!! ATTTTCTTAACTTTCATGAT+TGG + chr5_2:64173677-64173696 Msa0781610:intron 20.0%
!!! CATGCATAATATTTTTTGAA+TGG - chr5_2:64173808-64173827 None:intergenic 20.0%
!! TTCAAAAAATATTATGCATG+TGG + chr5_2:64173808-64173827 Msa0781610:intron 20.0%
!! TAATTCAAATTGGATGAAAT+TGG + chr5_2:64173834-64173853 Msa0781610:intron 20.0%
!!! TATTTTTTGTATAGAAAGCA+TGG + chr5_2:64173876-64173895 Msa0781610:intron 20.0%
!! ATTTAAATCAATTTGAAGGA+GGG - chr5_2:64173926-64173945 None:intergenic 20.0%
!!! TATATATAGGTTGTTTTTGA+AGG + chr5_2:64174378-64174397 Msa0781610:intron 20.0%
!!! ATATATAGGTTGTTTTTGAA+GGG + chr5_2:64174379-64174398 Msa0781610:intron 20.0%
!! TTAGTGTAATGTGATTTTGA+TGG + chr5_2:64171811-64171830 Msa0781610:intron 25.0%
! TAAACAACGAGTGAAAAATA+TGG + chr5_2:64171955-64171974 Msa0781610:intron 25.0%
! TTCTACAATATTCTTAACTC+TGG + chr5_2:64172041-64172060 Msa0781610:intron 25.0%
! TCTACAATATTCTTAACTCT+GGG + chr5_2:64172042-64172061 Msa0781610:intron 25.0%
!! GTTTGATTTCTGTTTAATCA+CGG - chr5_2:64172111-64172130 None:intergenic 25.0%
! GTGATTAAACAGAAATCAAA+CGG + chr5_2:64172110-64172129 Msa0781610:intron 25.0%
! TAATTAACAGCATAAGCATT+CGG - chr5_2:64172365-64172384 None:intergenic 25.0%
! TATGCTGTTAATTATCCAAA+TGG + chr5_2:64172371-64172390 Msa0781610:CDS 25.0%
!! TTAGAGTAATGTGATTTTGA+TGG + chr5_2:64172664-64172683 Msa0781610:intron 25.0%
! TTCTTATGCTTGCAATAATA+TGG - chr5_2:64172744-64172763 None:intergenic 25.0%
! AAACAACGAGTCAAAAATAT+TGG + chr5_2:64172806-64172825 Msa0781610:intron 25.0%
!!! TATTGTTTTTTTCCCTTCAA+TGG + chr5_2:64172852-64172871 Msa0781610:intron 25.0%
! TTCTACAATATTCTTAACTC+TGG + chr5_2:64172041-64172060 Msa0781610:intron 25.0%
! TCTACAATATTCTTAACTCT+GGG + chr5_2:64172042-64172061 Msa0781610:intron 25.0%
! TAATCAATAGCATAAGCATT+CGG - chr5_2:64173312-64173331 None:intergenic 25.0%
!! TATGCTATTGATTATCCAAA+TGG + chr5_2:64173318-64173337 Msa0781610:CDS 25.0%
! ATCATATAAAAGACAAGATC+AGG - chr5_2:64173509-64173528 None:intergenic 25.0%
!!! AGGCATAATTGATTTGATTA+AGG + chr5_2:64173716-64173735 Msa0781610:intron 25.0%
! CATGTGGATATAATTCAAAT+TGG + chr5_2:64173824-64173843 Msa0781610:intron 25.0%
! CATTTAAATCAATTTGAAGG+AGG - chr5_2:64173927-64173946 None:intergenic 25.0%
! GCTCATTTAAATCAATTTGA+AGG - chr5_2:64173930-64173949 None:intergenic 25.0%
!! TCAAATTGATTTAAATGAGC+CGG + chr5_2:64173930-64173949 Msa0781610:CDS 25.0%
! CACATTCATTCTCTATATAT+AGG + chr5_2:64174365-64174384 Msa0781610:intron 25.0%
!!! TATATAGGTTGTTTTTGAAG+GGG + chr5_2:64174380-64174399 Msa0781610:intron 25.0%
!!! TTGGTGGATAAAGTATTTTT+GGG - chr5_2:64174491-64174510 None:intergenic 25.0%
!!! TTTGGTGGATAAAGTATTTT+TGG - chr5_2:64174492-64174511 None:intergenic 25.0%
! ATTAAACAAGAATGACACAT+TGG + chr5_2:64174567-64174586 Msa0781610:CDS 25.0%
! TCAACATGATTCATAGGTTT+TGG - chr5_2:64171671-64171690 None:intergenic 30.0%
ACATTCTCAACATGATTCAT+AGG - chr5_2:64171677-64171696 None:intergenic 30.0%
CTCTTATGCTTGCAATAATA+TGG - chr5_2:64171892-64171911 None:intergenic 30.0%
!!! ATTGTTTTTTATCCCTTCGA+TGG + chr5_2:64172004-64172023 Msa0781610:intron 30.0%
CTGTTAATTATCCAAATGGA+AGG + chr5_2:64172375-64172394 Msa0781610:CDS 30.0%
! TCAACATGATTCATAGGTTT+TGG - chr5_2:64171671-64171690 None:intergenic 30.0%
ACATTCTCAACATGATTCAT+AGG - chr5_2:64171677-64171696 None:intergenic 30.0%
TGGAGTCGACAAATTTATTT+AGG + chr5_2:64172826-64172845 Msa0781610:intron 30.0%
!! CAGCTTTTATTTCCATTGAA+GGG - chr5_2:64172867-64172886 None:intergenic 30.0%
!! ACAGCTTTTATTTCCATTGA+AGG - chr5_2:64172868-64172887 None:intergenic 30.0%
TTTAATCACAGATCCATACA+CGG - chr5_2:64172947-64172966 None:intergenic 30.0%
! CTATTGATTATCCAAATGGA+AGG + chr5_2:64173322-64173341 Msa0781610:CDS 30.0%
!!! TCACCTTGTTTTTGGATATT+TGG - chr5_2:64173348-64173367 None:intergenic 30.0%
TTACTTTGATACCATTGAAG+TGG + chr5_2:64173553-64173572 Msa0781610:intron 30.0%
! TCTTGTTATGGTTCTGTAAT+TGG + chr5_2:64173634-64173653 Msa0781610:intron 30.0%
!! CTGTAATTGGTTTGAGTAAT+TGG + chr5_2:64173647-64173666 Msa0781610:intron 30.0%
!!! GCATCATTTTTTGAGTAAAC+CGG + chr5_2:64173738-64173757 Msa0781610:intron 30.0%
!!! CATCATTTTTTGAGTAAACC+GGG + chr5_2:64173739-64173758 Msa0781610:intron 30.0%
! ATCAGAGTTTAGAATTGCAA+TGG - chr5_2:64174037-64174056 None:intergenic 30.0%
! TCTCCATATCTTTCACATTT+TGG - chr5_2:64174510-64174529 None:intergenic 30.0%
AGAAGGAGAAAAAGAGAAAA+AGG + chr5_2:64174530-64174549 Msa0781610:CDS 30.0%
!! ATTGTCCTTGTTGTTTAAGA+TGG - chr5_2:64174818-64174837 None:intergenic 30.0%
! TTCTCAAGTTTGTTCATATC+AGG - chr5_2:64174892-64174911 None:intergenic 30.0%
!! CAGCTTTTATTTCCATCGAA+GGG - chr5_2:64172019-64172038 None:intergenic 35.0%
!! ACAGCTTTTATTTCCATCGA+AGG - chr5_2:64172020-64172039 None:intergenic 35.0%
TTTAATCACGGATCCATACA+CGG - chr5_2:64172099-64172118 None:intergenic 35.0%
AAACAGAAATCAAACGGTTC+TGG + chr5_2:64172116-64172135 Msa0781610:intron 35.0%
TAGAAGAAATCAAACGGTTC+TGG + chr5_2:64172967-64172986 Msa0781610:intron 35.0%
!! ACGGTTCTGGAAATTTCAAT+CGG + chr5_2:64172980-64172999 Msa0781610:CDS 35.0%
AGGCCAAATATCCAAAAACA+AGG + chr5_2:64173342-64173361 Msa0781610:CDS 35.0%
GTCAATGAAGTTCATTCACA+TGG - chr5_2:64173371-64173390 None:intergenic 35.0%
!! AGATTTTAGCCTCGTTTTCT+TGG + chr5_2:64173430-64173449 Msa0781610:intron 35.0%
GAAACTTAACCAAGAAAACG+AGG - chr5_2:64173442-64173461 None:intergenic 35.0%
GCAACTAAAATCCACTTCAA+TGG - chr5_2:64173567-64173586 None:intergenic 35.0%
! TTGGCTAGTTCATCTGATTA+AGG + chr5_2:64173696-64173715 Msa0781610:intron 35.0%
TTGAAGGGGATGAAAAAACA+TGG + chr5_2:64174394-64174413 Msa0781610:CDS 35.0%
GGGATGAAAAAACATGGAAA+GGG + chr5_2:64174400-64174419 Msa0781610:CDS 35.0%
!!! GGATAAAGTATTTTTGGGCA+TGG - chr5_2:64174486-64174505 None:intergenic 35.0%
! CCATATCTTTCACATTTTGG+TGG - chr5_2:64174507-64174526 None:intergenic 35.0%
CCACCAAAATGTGAAAGATA+TGG + chr5_2:64174504-64174523 Msa0781610:CDS 35.0%
TGTGAAAGATATGGAGAAGA+AGG + chr5_2:64174513-64174532 Msa0781610:CDS 35.0%
! AATCGGTTCTACAATTCCTT+CGG + chr5_2:64174717-64174736 Msa0781610:CDS 35.0%
!! TTGGTGTTGCTTTATCCAAT+CGG + chr5_2:64174856-64174875 Msa0781610:CDS 35.0%
!! AAGTGTTGATGTTCCTGTGT+TGG + chr5_2:64171601-64171620 Msa0781610:CDS 40.0%
! AATGTTTCTGTGCCTAGTGT+TGG + chr5_2:64171692-64171711 Msa0781610:CDS 40.0%
AACAATCGAACCTGAACAGA+AGG - chr5_2:64171737-64171756 None:intergenic 40.0%
! TTTGCCTGATTTTCCGTGTA+TGG + chr5_2:64172083-64172102 Msa0781610:intron 40.0%
! GGTGATGGCATCTTATTCTT+CGG - chr5_2:64172152-64172171 None:intergenic 40.0%
! TTTGTGTTACTGTTGCGCTT+GGG - chr5_2:64172194-64172213 None:intergenic 40.0%
! ATTTGTGTTACTGTTGCGCT+TGG - chr5_2:64172195-64172214 None:intergenic 40.0%
AAGCGCAACAGTAACACAAA+TGG + chr5_2:64172194-64172213 Msa0781610:CDS 40.0%
CTGAACATGTTTGGCATCAT+TGG - chr5_2:64172324-64172343 None:intergenic 40.0%
TCACCTTGTTCTTGGGTATT+TGG - chr5_2:64172401-64172420 None:intergenic 40.0%
! AATGTTTCTGTGCCTAGTGT+TGG + chr5_2:64171692-64171711 Msa0781610:CDS 40.0%
AACAAACGAACCTGAACAGA+AGG - chr5_2:64172590-64172609 None:intergenic 40.0%
! TTTGCCTGATTTTCCGTGTA+TGG + chr5_2:64172083-64172102 Msa0781610:intron 40.0%
AGATCCATACACGGAAAATC+AGG - chr5_2:64172938-64172957 None:intergenic 40.0%
GGATTCTCACCATTAGGATA+AGG - chr5_2:64173195-64173214 None:intergenic 40.0%
CTGAACATGTTTGGCATCAA+TGG - chr5_2:64173271-64173290 None:intergenic 40.0%
! TGGATATTTGGCCTTCCATT+TGG - chr5_2:64173336-64173355 None:intergenic 40.0%
!!! TCACATGGTCACCTTGTTTT+TGG - chr5_2:64173356-64173375 None:intergenic 40.0%
!! AAGATTCTAGCTTAACCCTG+TGG + chr5_2:64173462-64173481 Msa0781610:intron 40.0%
!!! TTAACCCTGTGGTGCTTTTT+TGG + chr5_2:64173473-64173492 Msa0781610:intron 40.0%
!!! TAACCCTGTGGTGCTTTTTT+GGG + chr5_2:64173474-64173493 Msa0781610:intron 40.0%
!! ATACCCAAAAAAGCACCACA+GGG - chr5_2:64173480-64173499 None:intergenic 40.0%
!! AATACCCAAAAAAGCACCAC+AGG - chr5_2:64173481-64173500 None:intergenic 40.0%
GAACAACAACAGGAGAAAAC+TGG + chr5_2:64173985-64174004 Msa0781610:CDS 40.0%
GGGGATGAAAAAACATGGAA+AGG + chr5_2:64174399-64174418 Msa0781610:CDS 40.0%
ACACTTTGTAGCTCAACTGA+AGG - chr5_2:64174625-64174644 None:intergenic 40.0%
GAAGGAATTGTAGAACCGAT+TGG - chr5_2:64174718-64174737 None:intergenic 40.0%
! TTTAAGATGGCAGTGTCTTG+AGG - chr5_2:64174805-64174824 None:intergenic 40.0%
CACTGCCATCTTAAACAACA+AGG + chr5_2:64174810-64174829 Msa0781610:CDS 40.0%
TGGATAAAGCAACACCAACT+GGG - chr5_2:64174854-64174873 None:intergenic 40.0%
TTGGATAAAGCAACACCAAC+TGG - chr5_2:64174855-64174874 None:intergenic 40.0%
!! GATGTTCCTGTGTTGGTTGT+TGG + chr5_2:64171608-64171627 Msa0781610:CDS 45.0%
TTGGTTCCAACAACCAACAC+AGG - chr5_2:64171617-64171636 None:intergenic 45.0%
GTTTGAGCATGAGAAAGAGC+TGG - chr5_2:64171647-64171666 None:intergenic 45.0%
! GCGAGTCGACAAATCTGTTT+TGG + chr5_2:64171977-64171996 Msa0781610:intron 45.0%
GGATCCATACACGGAAAATC+AGG - chr5_2:64172090-64172109 None:intergenic 45.0%
GTGACGATGCCTTATCCTAA+TGG + chr5_2:64172236-64172255 Msa0781610:CDS 45.0%
GGATTCTCGCCATTAGGATA+AGG - chr5_2:64172248-64172267 None:intergenic 45.0%
! TGGGTATTTGGCCTTCCATT+TGG - chr5_2:64172389-64172408 None:intergenic 45.0%
AGGCCAAATACCCAAGAACA+AGG + chr5_2:64172395-64172414 Msa0781610:CDS 45.0%
CACATGGTCACCTTGTTCTT+GGG - chr5_2:64172408-64172427 None:intergenic 45.0%
TCACATGGTCACCTTGTTCT+TGG - chr5_2:64172409-64172428 None:intergenic 45.0%
CAAGGTGACCATGTGAATCA+TGG + chr5_2:64172413-64172432 Msa0781610:CDS 45.0%
GTGACCATGTGAATCATGGT+CGG + chr5_2:64172417-64172436 Msa0781610:CDS 45.0%
!! AACACAGGAGCATCAACACT+AGG - chr5_2:64172455-64172474 None:intergenic 45.0%
!! TAGTGTTGATGCTCCTGTGT+TGG + chr5_2:64172454-64172473 Msa0781610:CDS 45.0%
TTGGTTCCAACAACCAACAC+AGG - chr5_2:64171617-64171636 None:intergenic 45.0%
GTTTGAGCATCAGAAAGAGC+CGG - chr5_2:64172500-64172519 None:intergenic 45.0%
TCCTATAGCTCCTTCTGTTC+AGG + chr5_2:64172577-64172596 Msa0781610:CDS 45.0%
ACCTGAACAGAAGGAGCTAT+AGG - chr5_2:64172581-64172600 None:intergenic 45.0%
! CATTTGTGTTGTTGCGCTTG+GGG - chr5_2:64173044-64173063 None:intergenic 45.0%
! CCATTTGTGTTGTTGCGCTT+GGG - chr5_2:64173045-64173064 None:intergenic 45.0%
! TTGCTCCGAATTTTCGTCCT+AGG + chr5_2:64173115-64173134 Msa0781610:CDS 45.0%
! TGCTCCGAATTTTCGTCCTA+GGG + chr5_2:64173116-64173135 Msa0781610:CDS 45.0%
GGTACCCTAGGACGAAAATT+CGG - chr5_2:64173123-64173142 None:intergenic 45.0%
TATGCAGGAACAGCAATGTG+AGG - chr5_2:64173150-64173169 None:intergenic 45.0%
TTAGGATAAGGTCCTGAACC+AGG - chr5_2:64173183-64173202 None:intergenic 45.0%
GGTTCAGGACCTTATCCTAA+TGG + chr5_2:64173183-64173202 Msa0781610:CDS 45.0%
GGCTTAGGATTCTCACCATT+AGG - chr5_2:64173201-64173220 None:intergenic 45.0%
TGTTCCATGCTATGCTCAGA+GGG - chr5_2:64173970-64173989 None:intergenic 45.0%
TTGTTCCATGCTATGCTCAG+AGG - chr5_2:64173971-64173990 None:intergenic 45.0%
GCATAGCATGGAACAACAAC+AGG + chr5_2:64173975-64173994 Msa0781610:CDS 45.0%
!! TGGCACCGATATCATTGAGT+CGG + chr5_2:64174005-64174024 Msa0781610:CDS 45.0%
ACCACCCGACTCAATGATAT+CGG - chr5_2:64174013-64174032 None:intergenic 45.0%
AAAGTCATGCCCCAAGGAAA+GGG + chr5_2:64174124-64174143 Msa0781610:CDS 45.0%
AAAAACATGGAAAGGGACGC+TGG + chr5_2:64174407-64174426 Msa0781610:CDS 45.0%
GCATGGCTAGCAATTTGAGT+TGG - chr5_2:64174469-64174488 None:intergenic 45.0%
CAAAGTGTGATTCCTCCTCA+AGG + chr5_2:64174637-64174656 Msa0781610:CDS 45.0%
TGTGTCTGTTGCATTCCTTG+AGG - chr5_2:64174655-64174674 None:intergenic 45.0%
ATTGGCAGCAAGCACAACAT+AGG - chr5_2:64174700-64174719 None:intergenic 45.0%
! ATGTTGTGCTTGCTGCCAAT+CGG + chr5_2:64174700-64174719 Msa0781610:CDS 45.0%
!! TCGTTTTGTTGCTGAACCGA+AGG - chr5_2:64174736-64174755 None:intergenic 45.0%
TCCTTTAGTCACTGCTCCTA+TGG + chr5_2:64174762-64174781 Msa0781610:CDS 45.0%
TCCATAGGAGCAGTGACTAA+AGG - chr5_2:64174766-64174785 None:intergenic 45.0%
GGAGTCTCATGTTGTTCCAT+AGG - chr5_2:64174781-64174800 None:intergenic 45.0%
TGACAACTTGCAAACCCAGT+TGG + chr5_2:64174837-64174856 Msa0781610:CDS 45.0%
! TCAGGAAGTGTAGAACCGAT+TGG - chr5_2:64174874-64174893 None:intergenic 45.0%
TGAGAAGATGCGCAACTTGT+TGG + chr5_2:64174906-64174925 Msa0781610:CDS 45.0%
AGAAAGAGCTGGCGAAGACT+TGG - chr5_2:64171636-64171655 None:intergenic 50.0%
!! TTCTGTGCCTAGTGTTGGTC+AGG + chr5_2:64171697-64171716 Msa0781610:CDS 50.0%
TCCTAGAGCTCCTTCTGTTC+AGG + chr5_2:64171724-64171743 Msa0781610:CDS 50.0%
ACCTGAACAGAAGGAGCTCT+AGG - chr5_2:64171728-64171747 None:intergenic 50.0%
ATCGTCACCACAGGAAAGTG+AGG - chr5_2:64172224-64172243 None:intergenic 50.0%
GGCTTAGGATTCTCGCCATT+AGG - chr5_2:64172254-64172273 None:intergenic 50.0%
GAATCCTAAGCCTGTATCCC+CGG + chr5_2:64172262-64172281 Msa0781610:CDS 50.0%
TTGGCATCATTGGCATGAGC+AGG - chr5_2:64172314-64172333 None:intergenic 50.0%
TGCCAAACATGTTCAGCCTC+CGG + chr5_2:64172328-64172347 Msa0781610:CDS 50.0%
GATGCCGACCATGATTCACA+TGG - chr5_2:64172424-64172443 None:intergenic 50.0%
!! GATGCTCCTGTGTTGGTTGT+TGG + chr5_2:64172461-64172480 Msa0781610:CDS 50.0%
TGTTGGAACCAAGTCTTCGC+CGG + chr5_2:64171625-64171644 Msa0781610:CDS 50.0%
!! TTCTGTGCCTAGTGTTGGTC+AGG + chr5_2:64171697-64171716 Msa0781610:CDS 50.0%
GGCTTTCGATAGCATGGTGA+TGG - chr5_2:64173018-64173037 None:intergenic 50.0%
TCACCATGCTATCGAAAGCC+AGG + chr5_2:64173018-64173037 Msa0781610:CDS 50.0%
CCCAAGCGCAACAACACAAA+TGG + chr5_2:64173042-64173061 Msa0781610:CDS 50.0%
! GCCATTTGTGTTGTTGCGCT+TGG - chr5_2:64173046-64173065 None:intergenic 50.0%
CGAAAATTCGGAGCAACAGG+CGG - chr5_2:64173111-64173130 None:intergenic 50.0%
GGACGAAAATTCGGAGCAAC+AGG - chr5_2:64173114-64173133 None:intergenic 50.0%
TATGCTTTCCCACCTGGTTC+AGG + chr5_2:64173168-64173187 Msa0781610:CDS 50.0%
GATAAGGTCCTGAACCAGGT+GGG - chr5_2:64173179-64173198 None:intergenic 50.0%
GAATCCTAAGCCTGTATCCC+CGG + chr5_2:64172262-64172281 Msa0781610:CDS 50.0%
TTGGCATCAATGGCATGAGC+AGG - chr5_2:64173261-64173280 None:intergenic 50.0%
TGCCAAACATGTTCAGCCTC+CGG + chr5_2:64172328-64172347 Msa0781610:CDS 50.0%
TGAGTAAACCGGGTGATGCT+AGG + chr5_2:64173749-64173768 Msa0781610:intron 50.0%
GAGTAAACCGGGTGATGCTA+GGG + chr5_2:64173750-64173769 Msa0781610:intron 50.0%
TCTTAGTCCCTAGCATCACC+CGG - chr5_2:64173760-64173779 None:intergenic 50.0%
TGCTATGCTCAGAGGGATCT+TGG - chr5_2:64173963-64173982 None:intergenic 50.0%
AGATCCCTCTGAGCATAGCA+TGG + chr5_2:64173963-64173982 Msa0781610:CDS 50.0%
!! GGCACCGATATCATTGAGTC+GGG + chr5_2:64174006-64174025 Msa0781610:CDS 50.0%
ACCGATATCATTGAGTCGGG+TGG + chr5_2:64174009-64174028 Msa0781610:CDS 50.0%
CTTGGGGCATGACTTTCTTC+TGG - chr5_2:64174120-64174139 None:intergenic 50.0%
CAGAAGAAAGTCATGCCCCA+AGG + chr5_2:64174118-64174137 Msa0781610:CDS 50.0%
GAAAGTCATGCCCCAAGGAA+AGG + chr5_2:64174123-64174142 Msa0781610:CDS 50.0%
TGTCCAATGCCCTTTCCTTG+GGG - chr5_2:64174136-64174155 None:intergenic 50.0%
CTGTCCAATGCCCTTTCCTT+GGG - chr5_2:64174137-64174156 None:intergenic 50.0%
TCTGTCCAATGCCCTTTCCT+TGG - chr5_2:64174138-64174157 None:intergenic 50.0%
!! AAGGAAAGGGCATTGGACAG+AGG + chr5_2:64174137-64174156 Msa0781610:CDS 50.0%
GTCTGTTGCATTCCTTGAGG+AGG - chr5_2:64174652-64174671 None:intergenic 50.0%
AAGATGGCAGTGTCTTGAGG+AGG - chr5_2:64174802-64174821 None:intergenic 50.0%
GGATCAGAGGAGGAAAGCAG+AGG + chr5_2:64171561-64171580 Msa0781610:CDS 55.0%
GGAGCAACCTGACCAACACT+AGG - chr5_2:64171707-64171726 None:intergenic 55.0%
TTACTGTTGCGCTTGGGACC+TGG - chr5_2:64172188-64172207 None:intergenic 55.0%
TGGCATGCCTCACTTTCCTG+TGG + chr5_2:64172214-64172233 Msa0781610:CDS 55.0%
!! GGATAAGGCATCGTCACCAC+AGG - chr5_2:64172233-64172252 None:intergenic 55.0%
AAACCTTGTCCTGCTGCTGC+CGG - chr5_2:64172284-64172303 None:intergenic 55.0%
GCATCATTGGCATGAGCAGG+TGG - chr5_2:64172311-64172330 None:intergenic 55.0%
CACCGGAGGCTGAACATGTT+TGG - chr5_2:64172333-64172352 None:intergenic 55.0%
GCATTCGGATCTCCTTGCAC+CGG - chr5_2:64172350-64172369 None:intergenic 55.0%
AGAAAGAGCCGGCGAAGACT+TGG - chr5_2:64172489-64172508 None:intergenic 55.0%
GGAGCAACCTGACCAACACT+AGG - chr5_2:64171707-64171726 None:intergenic 55.0%
TGGCACGCTTCACTTTCCTG+TGG + chr5_2:64173062-64173081 Msa0781610:CDS 55.0%
TTCACTTTCCTGTGGCGACG+AGG + chr5_2:64173070-64173089 Msa0781610:CDS 55.0%
ACAGGCGGCTGCTGATGATA+AGG - chr5_2:64173096-64173115 None:intergenic 55.0%
!! ATGTGAGGTGGAGGTACCCT+AGG - chr5_2:64173135-64173154 None:intergenic 55.0%
GGAACAGCAATGTGAGGTGG+AGG - chr5_2:64173144-64173163 None:intergenic 55.0%
GCAGGAACAGCAATGTGAGG+TGG - chr5_2:64173147-64173166 None:intergenic 55.0%
! CCAGGTGGGAAAGCATATGC+AGG - chr5_2:64173165-64173184 None:intergenic 55.0%
CCTGCATATGCTTTCCCACC+TGG + chr5_2:64173162-64173181 Msa0781610:CDS 55.0%
GGATAAGGTCCTGAACCAGG+TGG - chr5_2:64173180-64173199 None:intergenic 55.0%
AAACCTTGTCCTGCTGCAGC+CGG - chr5_2:64173231-64173250 None:intergenic 55.0%
GCATCAATGGCATGAGCAGG+TGG - chr5_2:64173258-64173277 None:intergenic 55.0%
CACCGGAGGCTGAACATGTT+TGG - chr5_2:64172333-64172352 None:intergenic 55.0%
GCATTCGGATCTCCTTGCAC+CGG - chr5_2:64172350-64172369 None:intergenic 55.0%
GAGGGATCTTGGACTGAAGC+CGG - chr5_2:64173952-64173971 None:intergenic 55.0%
! ATGCCCCAAGGAAAGGGCAT+TGG + chr5_2:64174130-64174149 Msa0781610:CDS 55.0%
GGCTTTCGATAGCGCGGTGA+TGG - chr5_2:64172167-64172186 None:intergenic 60.0%
TCACCGCGCTATCGAAAGCC+AGG + chr5_2:64172167-64172186 Msa0781610:CDS 60.0%
! GGACCTGGCTTTCGATAGCG+CGG - chr5_2:64172173-64172192 None:intergenic 60.0%
AACCTTGTCCTGCTGCTGCC+GGG - chr5_2:64172283-64172302 None:intergenic 60.0%
CATGTTCAGCCTCCGGTGCA+AGG + chr5_2:64172335-64172354 Msa0781610:CDS 60.0%
TTCGGATCTCCTTGCACCGG+AGG - chr5_2:64172347-64172366 None:intergenic 60.0%
! GGGCCTGGCTTTCGATAGCA+TGG - chr5_2:64173024-64173043 None:intergenic 60.0%
TGATAAGGCCTCGTCGCCAC+AGG - chr5_2:64173081-64173100 None:intergenic 60.0%
AACCTTGTCCTGCTGCAGCC+GGG - chr5_2:64173230-64173249 None:intergenic 60.0%
CATGTTCAGCCTCCGGTGCA+AGG + chr5_2:64172335-64172354 Msa0781610:CDS 60.0%
TTCGGATCTCCTTGCACCGG+AGG - chr5_2:64172347-64172366 None:intergenic 60.0%
GCTGCCGGGGATACAGGCTT+AGG - chr5_2:64172269-64172288 None:intergenic 65.0%
ACCTTGTCCTGCTGCTGCCG+GGG - chr5_2:64172282-64172301 None:intergenic 65.0%
! GTGTTGTTGCGCTTGGGGCC+TGG - chr5_2:64173039-64173058 None:intergenic 65.0%
GCAGCCGGGGATACAGGCTT+AGG - chr5_2:64173216-64173235 None:intergenic 65.0%
ACCTTGTCCTGCTGCAGCCG+GGG - chr5_2:64173229-64173248 None:intergenic 65.0%
CCTGCTGCTGCCGGGGATAC+AGG - chr5_2:64172275-64172294 None:intergenic 70.0%
CCTGTATCCCCGGCAGCAGC+AGG + chr5_2:64172272-64172291 Msa0781610:CDS 70.0%
TCCCCGGCAGCAGCAGGACA+AGG + chr5_2:64172278-64172297 Msa0781610:CDS 70.0%
CCTGCTGCAGCCGGGGATAC+AGG - chr5_2:64173222-64173241 None:intergenic 70.0%
CCTGTATCCCCGGCTGCAGC+AGG + chr5_2:64173219-64173238 Msa0781610:CDS 70.0%
TCCCCGGCTGCAGCAGGACA+AGG + chr5_2:64173225-64173244 Msa0781610:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 64171554 64174942 64171554 ID=Msa0781610;Name=Msa0781610
chr5_2 mRNA 64171554 64174942 64171554 ID=Msa0781610-mRNA-1;Parent=Msa0781610;Name=Msa0781610-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|5|0|632
chr5_2 exon 64171554 64171745 64171554 ID=Msa0781610-mRNA-1:exon:19049;Parent=Msa0781610-mRNA-1
chr5_2 exon 64172122 64172598 64172122 ID=Msa0781610-mRNA-1:exon:19050;Parent=Msa0781610-mRNA-1
chr5_2 exon 64172970 64173363 64172970 ID=Msa0781610-mRNA-1:exon:19051;Parent=Msa0781610-mRNA-1
chr5_2 exon 64173890 64174169 64173890 ID=Msa0781610-mRNA-1:exon:19052;Parent=Msa0781610-mRNA-1
chr5_2 exon 64174387 64174942 64174387 ID=Msa0781610-mRNA-1:exon:19053;Parent=Msa0781610-mRNA-1
chr5_2 CDS 64171554 64171745 64171554 ID=Msa0781610-mRNA-1:cds;Parent=Msa0781610-mRNA-1
chr5_2 CDS 64172122 64172598 64172122 ID=Msa0781610-mRNA-1:cds;Parent=Msa0781610-mRNA-1
chr5_2 CDS 64172970 64173363 64172970 ID=Msa0781610-mRNA-1:cds;Parent=Msa0781610-mRNA-1
chr5_2 CDS 64173890 64174169 64173890 ID=Msa0781610-mRNA-1:cds;Parent=Msa0781610-mRNA-1
chr5_2 CDS 64174387 64174942 64174387 ID=Msa0781610-mRNA-1:cds;Parent=Msa0781610-mRNA-1
Gene Sequence

>Msa0781610

ATGGTGAGGATCAGAGGAGGAAAGCAGAGGAAAAGTGTTGATGAGAAAAGTGTTGATGTTCCTGTGTTGGTTGTTGGAACCAAGTCTTCGCCAGCTCTTTCTCATGCTCAAACTCCAAAACCTATGAATCATGTTGAGAATGTTTCTGTGCCTAGTGTTGGTCAGGTTGCTCCTAGAGCTCCTTCTGTTCAGAAATCAAACGGTTCTGGAAACTTCAATCCGAAGAATAAGATGCCATCACCGCGCTATCGAAAGCCAGGTCCCAAGCGCAACAGTAACACAAATGGCATGCCTCACTTTCCTGTGGTGACGATGCCTTATCCTAATGGCGAGAATCCTAAGCCTGTATCCCCGGCAGCAGCAGGACAAGGTTTTACTCCACCTGCTCATGCCAATGATGCCAAACATGTTCAGCCTCCGGTGCAAGGAGATCCGAATGCTTATGCTGTTAATTATCCAAATGGAAGGCCAAATACCCAAGAACAAGGTGACCATGTGAATCATGGTCGGCATCATCAAAGACCTAGTGTTGATGCTCCTGTGTTGGTTGTTGGAACCAAGTCTTCGCCGGCTCTTTCTGATGCTCAAACTCCAAAACCTATGAATCATGTTGAGAATGTTTCTGTGCCTAGTGTTGGTCAGGTTGCTCCTATAGCTCCTTCTGTTCAGAAGAAATCAAACGGTTCTGGAAATTTCAATCGGATGAATAAGCTGCCATCACCATGCTATCGAAAGCCAGGCCCCAAGCGCAACAACACAAATGGCACGCTTCACTTTCCTGTGGCGACGAGGCCTTATCATCAGCAGCCGCCTGTTGCTCCGAATTTTCGTCCTAGGGTACCTCCACCTCACATTGCTGTTCCTGCATATGCTTTCCCACCTGGTTCAGGACCTTATCCTAATGGTGAGAATCCTAAGCCTGTATCCCCGGCTGCAGCAGGACAAGGTTTTACTCCACCTGCTCATGCCATTGATGCCAAACATGTTCAGCCTCCGGTGCAAGGAGATCCGAATGCTTATGCTATTGATTATCCAAATGGAAGGCCAAATATCCAAAAACAAGAAAGCATGGAAGAAAGAAAAAGTATACAATCATCCCTCCTTCAAATTGATTTAAATGAGCCGGCTTCAGTCCAAGATCCCTCTGAGCATAGCATGGAACAACAACAGGAGAAAACTGGCACCGATATCATTGAGTCGGGTGGTGCCATTGCAATTCTAAACTCTGATGATAATAACGTCACAACTCTAAACTCTGACGAAAATAACTTAATTCAAGCTGAGTCAGTACCAGAAGAAAGTCATGCCCCAAGGAAAGGGCATTGGACAGAGGATGAACACAAGTTGTTTTTGAAGGGGATGAAAAAACATGGAAAGGGACGCTGGAAAAATATTTCAAAAGAATTTGTGGTGACAAAAACTCCAACTCAAATTGCTAGCCATGCCCAAAAATACTTTATCCACCAAAATGTGAAAGATATGGAGAAGAAGGAGAAAAAGAGAAAAAGGATTCACGACACAACATTAAACAAGAATGACACATTGGTCACTGTCGCTGTTGATCAAGAAGATGAGATTCCTTCAGTTGAGCTACAAAGTGTGATTCCTCCTCAAGGAATGCAACAGACACAAACACAACAGAATGAGATTTCTCCTATGTTGTGCTTGCTGCCAATCGGTTCTACAATTCCTTCGGTTCAGCAACAAAACGAGCTTACTCCTTTAGTCACTGCTCCTATGGAACAACATGAGACTCCTCCTCAAGACACTGCCATCTTAAACAACAAGGACAATGACAACTTGCAAACCCAGTTGGTGTTGCTTTATCCAATCGGTTCTACACTTCCTGATATGAACAAACTTGAGAAGATGCGCAACTTGTTGGCAAAAGAACTTTGA
Protein sequence

>Msa0781610

MVRIRGGKQRKSVDEKSVDVPVLVVGTKSSPALSHAQTPKPMNHVENVSVPSVGQVAPRAPSVQKSNGSGNFNPKNKMPSPRYRKPGPKRNSNTNGMPHFPVVTMPYPNGENPKPVSPAAAGQGFTPPAHANDAKHVQPPVQGDPNAYAVNYPNGRPNTQEQGDHVNHGRHHQRPSVDAPVLVVGTKSSPALSDAQTPKPMNHVENVSVPSVGQVAPIAPSVQKKSNGSGNFNRMNKLPSPCYRKPGPKRNNTNGTLHFPVATRPYHQQPPVAPNFRPRVPPPHIAVPAYAFPPGSGPYPNGENPKPVSPAAAGQGFTPPAHAIDAKHVQPPVQGDPNAYAIDYPNGRPNIQKQESMEERKSIQSSLLQIDLNEPASVQDPSEHSMEQQQEKTGTDIIESGGAIAILNSDDNNVTTLNSDENNLIQAESVPEESHAPRKGHWTEDEHKLFLKGMKKHGKGRWKNISKEFVVTKTPTQIASHAQKYFIHQNVKDMEKKEKKRKRIHDTTLNKNDTLVTVAVDQEDEIPSVELQSVIPPQGMQQTQTQQNEISPMLCLLPIGSTIPSVQQQNELTPLVTAPMEQHETPPQDTAILNNKDNDNLQTQLVLLYPIGSTLPDMNKLEKMRNLLAKEL*