AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0781620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0781620 MtrunA17_Chr5g0441141 71.233 292 25 9 8 266 10 275 1.11e-127 363
Msa0781620 MtrunA17_Chr5g0440761 70.819 281 29 7 8 261 10 264 3.33e-125 357
Msa0781620 MtrunA17_Chr5g0440781 87.079 178 18 2 8 181 10 186 3.02e-107 308
Msa0781620 MtrunA17_Chr5g0441131 73.418 158 38 2 2 156 1 157 1.87e-76 230
Msa0781620 MtrunA17_Chr5g0425591 93.548 93 6 0 2 94 1 93 7.11e-60 184
Msa0781620 MtrunA17_Chr1g0192411 51.678 149 66 4 2 146 1 147 1.55e-40 144
Msa0781620 MtrunA17_Chr1g0154031 41.860 172 85 4 11 169 77 246 7.81e-39 140
Msa0781620 MtrunA17_Chr4g0072451 52.532 158 20 5 5 154 2 112 1.35e-38 131
Msa0781620 MtrunA17_Chr1g0151941 41.111 180 95 5 10 180 12 189 4.31e-38 134
Msa0781620 MtrunA17_Chr3g0099131 52.101 119 55 2 8 126 39 155 2.92e-37 137
Msa0781620 MtrunA17_Chr2g0322521 54.167 120 53 2 11 130 30 147 1.93e-36 133
Msa0781620 MtrunA17_Chr8g0354661 38.947 190 98 4 11 193 38 216 2.52e-36 135
Msa0781620 MtrunA17_Chr3g0103281 50.420 119 56 3 9 126 11 127 1.07e-35 129
Msa0781620 MtrunA17_Chr4g0037141 48.855 131 62 4 8 137 10 136 1.82e-35 128
Msa0781620 MtrunA17_Chr4g0022881 50.420 119 57 2 10 128 12 128 3.50e-35 125
Msa0781620 MtrunA17_Chr3g0080861 38.889 162 91 4 11 166 38 197 5.16e-35 131
Msa0781620 MtrunA17_Chr7g0228231 50.427 117 56 2 3 119 7 121 7.59e-35 124
Msa0781620 MtrunA17_Chr5g0410961 50.820 122 57 3 10 130 12 131 2.01e-34 127
Msa0781620 MtrunA17_Chr5g0395281 46.043 139 70 4 4 139 6 142 6.95e-34 124
Msa0781620 MtrunA17_Chr8g0385321 53.509 114 50 3 10 122 12 123 9.31e-34 124
Msa0781620 MtrunA17_Chr2g0323411 51.754 114 52 3 11 123 13 124 9.51e-34 124
Msa0781620 MtrunA17_Chr6g0450101 50.893 112 53 2 3 114 7 116 1.34e-33 121
Msa0781620 MtrunA17_Chr3g0131121 52.632 114 51 3 10 122 12 123 1.68e-33 123
Msa0781620 MtrunA17_Chr4g0048511 50.877 114 53 3 11 123 14 125 1.93e-33 124
Msa0781620 MtrunA17_Chr2g0281071 52.212 113 51 3 11 122 14 124 2.78e-33 124
Msa0781620 MtrunA17_Chr7g0270891 45.638 149 69 5 11 149 13 159 2.83e-33 124
Msa0781620 MtrunA17_Chr1g0203411 43.651 126 69 2 10 135 12 135 3.40e-33 122
Msa0781620 MtrunA17_Chr1g0167691 50.962 104 49 2 11 114 13 114 5.69e-33 120
Msa0781620 MtrunA17_Chr7g0274581 50.000 108 51 3 11 117 13 118 6.43e-33 119
Msa0781620 MtrunA17_Chr4g0039971 46.923 130 63 4 1 126 1 128 7.25e-33 123
Msa0781620 MtrunA17_Chr2g0309911 48.305 118 58 3 6 122 7 122 8.17e-33 122
Msa0781620 MtrunA17_Chr3g0115821 47.934 121 60 3 11 130 13 131 8.29e-33 122
Msa0781620 MtrunA17_Chr1g0193801 45.926 135 70 3 11 144 13 145 8.43e-33 123
Msa0781620 MtrunA17_Chr1g0193371 51.327 113 52 3 11 122 13 123 1.04e-32 122
Msa0781620 MtrunA17_Chr1g0187761 50.962 104 49 2 11 114 13 114 1.29e-32 120
Msa0781620 MtrunA17_Chr4g0058631 42.657 143 79 3 11 152 13 153 1.97e-32 122
Msa0781620 MtrunA17_Chr1g0152011 55.556 108 45 3 8 114 10 115 2.61e-32 121
Msa0781620 MtrunA17_Chr1g0209661 37.288 177 80 5 11 158 28 202 3.62e-32 120
Msa0781620 MtrunA17_Chr6g0453751 63.043 92 26 1 11 94 21 112 3.96e-32 115
Msa0781620 MtrunA17_Chr1g0211161 48.000 125 62 3 3 126 6 128 4.00e-32 118
Msa0781620 MtrunA17_Chr4g0032401 42.759 145 75 4 11 149 18 160 4.05e-32 120
Msa0781620 MtrunA17_Chr1g0167661 49.123 114 54 3 11 122 13 124 5.81e-32 118
Msa0781620 MtrunA17_Chr3g0117091 50.427 117 55 3 11 126 13 127 7.00e-32 120
Msa0781620 MtrunA17_Chr5g0400821 54.630 108 46 3 8 114 10 115 7.23e-32 119
Msa0781620 MtrunA17_Chr6g0452271 47.500 120 60 3 8 126 10 127 9.62e-32 119
Msa0781620 MtrunA17_Chr5g0434571 45.324 139 71 4 11 148 49 183 1.11e-31 119
Msa0781620 MtrunA17_Chr2g0328771 48.780 123 57 4 11 132 21 138 1.15e-31 119
Msa0781620 MtrunA17_Chr5g0435101 39.073 151 89 3 9 158 10 158 1.52e-31 116
Msa0781620 MtrunA17_Chr4g0022901 44.286 140 65 5 2 137 1 131 1.56e-31 117
Msa0781620 MtrunA17_Chr4g0054391 56.311 103 42 3 8 109 10 110 2.13e-31 117
Msa0781620 MtrunA17_Chr3g0135311 52.778 108 48 3 8 114 10 115 2.25e-31 119
Msa0781620 MtrunA17_Chr3g0110351 46.094 128 66 3 11 137 13 138 2.28e-31 118
Msa0781620 MtrunA17_Chr2g0327351 55.769 104 43 3 8 110 10 111 2.37e-31 118
Msa0781620 MtrunA17_Chr6g0453471 45.669 127 66 3 11 136 13 137 2.84e-31 119
Msa0781620 MtrunA17_Chr8g0342521 47.107 121 61 3 3 122 5 123 4.45e-31 118
Msa0781620 MtrunA17_Chr7g0217741 47.009 117 59 3 11 126 13 127 4.95e-31 117
Msa0781620 MtrunA17_Chr4g0022931 39.103 156 80 5 2 152 1 146 5.45e-31 116
Msa0781620 MtrunA17_Chr2g0330041 47.107 121 61 3 3 122 5 123 6.12e-31 118
Msa0781620 MtrunA17_Chr1g0194301 47.222 108 55 2 11 118 34 139 7.57e-31 115
Msa0781620 MtrunA17_Chr8g0349261 49.123 114 54 4 11 122 14 125 8.64e-31 116
Msa0781620 MtrunA17_Chr1g0193901 68.132 91 28 1 3 92 4 94 1.00e-30 110
Msa0781620 MtrunA17_Chr1g0193891 68.132 91 28 1 3 92 4 94 1.00e-30 110
Msa0781620 MtrunA17_Chr1g0193871 68.132 91 28 1 3 92 4 94 1.00e-30 110
Msa0781620 MtrunA17_Chr1g0193881 68.132 91 28 1 3 92 4 94 1.00e-30 110
Msa0781620 MtrunA17_Chr7g0228891 47.863 117 58 3 11 126 13 127 1.01e-30 115
Msa0781620 MtrunA17_Chr7g0271241 55.556 99 42 2 11 109 13 109 1.11e-30 117
Msa0781620 MtrunA17_Chr4g0042671 45.185 135 69 4 11 142 13 145 1.21e-30 118
Msa0781620 MtrunA17_Chr8g0342541 47.321 112 57 2 3 114 5 114 1.69e-30 116
Msa0781620 MtrunA17_Chr4g0044421 46.087 115 59 3 9 122 11 123 2.02e-30 112
Msa0781620 MtrunA17_Chr4g0072751 53.846 104 45 3 8 110 10 111 2.11e-30 116
Msa0781620 MtrunA17_Chr1g0194951 34.973 183 91 6 11 170 13 190 2.26e-30 116
Msa0781620 MtrunA17_Chr3g0088461 50.962 104 49 2 11 114 23 124 2.33e-30 116
Msa0781620 MtrunA17_Chr4g0028311 52.778 108 48 3 8 114 10 115 2.47e-30 115
Msa0781620 MtrunA17_Chr4g0068061 49.038 104 51 2 11 114 13 114 3.96e-30 115
Msa0781620 MtrunA17_Chr7g0261281 48.077 104 52 2 11 114 13 114 4.41e-30 114
Msa0781620 MtrunA17_Chr8g0343831 47.368 114 57 3 6 118 4 115 5.18e-30 113
Msa0781620 MtrunA17_Chr2g0323351 49.038 104 51 2 11 114 13 114 7.60e-30 112
Msa0781620 MtrunA17_Chr4g0022911 42.647 136 66 5 11 143 14 140 8.30e-30 113
Msa0781620 MtrunA17_Chr7g0264641 41.558 154 73 5 8 160 10 147 8.80e-30 113
Msa0781620 MtrunA17_Chr4g0057031 48.696 115 56 3 10 123 12 124 9.27e-30 112
Msa0781620 MtrunA17_Chr1g0186061 48.598 107 53 2 11 117 21 125 1.10e-29 112
Msa0781620 MtrunA17_Chr5g0397231 47.222 108 55 2 3 110 5 110 1.54e-29 114
Msa0781620 MtrunA17_Chr5g0417821 46.341 123 63 3 5 126 2 122 1.57e-29 112
Msa0781620 MtrunA17_Chr1g0194291 45.872 109 57 2 10 118 21 127 2.10e-29 112
Msa0781620 MtrunA17_Chr4g0022891 45.370 108 57 2 10 117 12 117 3.27e-29 110
Msa0781620 MtrunA17_Chr3g0121241 42.623 122 67 3 6 126 38 157 3.66e-29 112
Msa0781620 MtrunA17_Chr8g0387421 45.299 117 61 3 3 118 5 119 3.91e-29 112
Msa0781620 MtrunA17_Chr4g0055981 47.475 99 50 2 12 110 57 153 4.49e-29 110
Msa0781620 MtrunA17_Chr4g0060721 48.148 108 53 3 11 117 14 119 8.44e-29 111
Msa0781620 MtrunA17_Chr2g0293911 45.763 118 62 2 1 118 15 130 1.33e-28 111
Msa0781620 MtrunA17_Chr4g0068921 46.154 117 61 2 1 117 15 129 1.84e-28 107
Msa0781620 MtrunA17_Chr8g0346561 46.729 107 55 2 12 118 14 118 2.07e-28 110
Msa0781620 MtrunA17_Chr1g0180391 45.690 116 58 3 3 118 12 122 2.22e-28 108
Msa0781620 MtrunA17_Chr6g0487491 35.052 194 109 7 8 192 10 195 2.96e-28 108
Msa0781620 MtrunA17_Chr4g0070641 48.485 99 49 2 12 110 14 110 3.62e-28 105
Msa0781620 MtrunA17_Chr7g0275911 44.762 105 56 2 6 110 8 110 4.99e-28 108
Msa0781620 MtrunA17_Chr1g0168661 44.248 113 58 3 11 123 22 129 7.06e-28 107
Msa0781620 MtrunA17_Chr4g0013361 42.857 147 77 5 11 153 11 154 8.32e-28 108
Msa0781620 MtrunA17_Chr6g0453211 47.525 101 51 2 10 110 12 110 8.60e-28 108
Msa0781620 MtrunA17_Chr8g0342481 46.018 113 58 3 3 114 5 115 9.10e-28 110
Msa0781620 MtrunA17_Chr4g0070611 48.485 99 49 2 12 110 14 110 9.27e-28 108
Msa0781620 MtrunA17_Chr3g0099141 55.294 85 37 1 8 92 38 121 9.76e-28 103
Msa0781620 MtrunA17_Chr2g0311221 50.000 104 50 2 8 111 12 113 9.93e-28 108
Msa0781620 MtrunA17_Chr3g0092401 45.872 109 57 2 10 118 13 119 1.03e-27 108
Msa0781620 MtrunA17_Chr7g0217221 47.706 109 54 3 10 117 12 118 1.06e-27 107
Msa0781620 MtrunA17_Chr7g0254411 49.074 108 52 3 11 117 13 118 1.31e-27 108
Msa0781620 MtrunA17_Chr7g0269831 52.000 100 46 2 11 110 13 110 5.09e-27 107
Msa0781620 MtrunA17_Chr6g0470971 46.789 109 56 2 11 119 15 121 5.70e-27 105
Msa0781620 MtrunA17_Chr8g0334881 45.872 109 56 3 10 117 10 116 6.61e-27 106
Msa0781620 MtrunA17_Chr1g0203441 45.455 110 58 2 11 120 14 121 6.98e-27 105
Msa0781620 MtrunA17_Chr7g0220341 31.698 265 157 12 2 249 17 274 2.32e-26 103
Msa0781620 MtrunA17_Chr8g0360111 43.810 105 57 2 6 110 21 123 3.50e-26 103
Msa0781620 MtrunA17_Chr5g0434931 44.762 105 56 2 10 114 35 137 5.10e-26 103
Msa0781620 MtrunA17_Chr5g0434911 42.478 113 63 2 2 114 13 123 9.21e-26 102
Msa0781620 MtrunA17_Chr7g0240821 46.000 100 52 2 15 114 6 103 1.71e-25 100
Msa0781620 MtrunA17_Chr2g0327821 44.340 106 57 2 9 114 5 108 5.32e-25 99.4
Msa0781620 MtrunA17_Chr4g0030881 41.463 123 60 4 10 122 7 127 1.85e-24 98.6
Msa0781620 MtrunA17_Chr7g0247131 52.439 82 36 3 42 122 10 89 1.94e-24 98.6
Msa0781620 MtrunA17_Chr3g0133601 45.133 113 59 3 9 121 34 143 2.05e-24 97.8
Msa0781620 MtrunA17_Chr5g0434841 45.192 104 55 2 11 114 21 122 3.62e-24 99.0
Msa0781620 MtrunA17_Chr3g0117511 44.348 115 59 4 12 124 183 294 4.59e-24 100
Msa0781620 MtrunA17_Chr7g0228991 42.857 105 58 2 10 114 29 131 5.71e-24 97.8
Msa0781620 MtrunA17_Chr5g0434831 44.231 104 56 2 11 114 8 109 8.87e-24 95.1
Msa0781620 MtrunA17_Chr5g0401731 48.598 107 51 4 9 114 12 115 1.25e-23 97.8
Msa0781620 MtrunA17_Chr4g0008551 47.273 110 50 5 12 120 38 140 1.54e-23 97.8
Msa0781620 MtrunA17_Chr6g0454921 48.039 102 48 4 9 109 12 109 4.56e-23 93.6
Msa0781620 MtrunA17_Chr4g0058991 45.192 104 52 4 12 114 209 308 2.53e-22 95.5
Msa0781620 MtrunA17_Chr5g0429661 44.444 108 55 4 12 118 122 225 4.70e-22 94.0
Msa0781620 MtrunA17_Chr5g0437321 46.154 104 53 3 7 110 14 114 7.23e-22 92.0
Msa0781620 MtrunA17_Chr6g0480581 38.679 106 62 3 12 117 4 106 1.63e-21 90.1
Msa0781620 MtrunA17_Chr4g0053431 47.664 107 52 4 9 114 2 105 1.89e-21 90.9
Msa0781620 MtrunA17_Chr2g0323321 50.000 74 37 0 11 84 12 85 2.32e-21 86.3
Msa0781620 MtrunA17_Chr5g0397841 47.115 104 52 3 6 109 104 204 3.29e-21 92.4
Msa0781620 MtrunA17_Chr6g0460661 37.391 115 69 3 12 126 16 127 3.51e-21 87.4
Msa0781620 MtrunA17_Chr8g0342511 47.561 82 43 0 3 84 5 86 3.53e-21 85.5
Msa0781620 MtrunA17_Chr5g0395221 45.349 86 45 1 1 84 1 86 4.09e-21 85.1
Msa0781620 MtrunA17_Chr7g0228401 39.695 131 52 4 9 115 252 379 1.53e-20 90.5
Msa0781620 MtrunA17_Chr3g0125801 43.697 119 56 6 3 114 4 118 2.28e-20 88.2
Msa0781620 MtrunA17_Chr4g0042611 47.297 74 39 0 11 84 13 86 2.34e-20 83.2
Msa0781620 MtrunA17_Chr8g0342531 47.561 82 43 0 3 84 5 86 5.00e-20 84.3
Msa0781620 MtrunA17_Chr7g0228531 43.689 103 54 4 12 114 220 318 2.01e-19 87.0
Msa0781620 MtrunA17_Chr1g0157731 40.777 103 58 3 12 114 91 190 2.60e-19 87.4
Msa0781620 MtrunA17_Chr1g0157731 37.000 100 61 2 10 109 37 134 1.29e-13 70.5
Msa0781620 MtrunA17_Chr3g0139671 40.777 103 58 3 12 114 85 184 2.93e-19 87.4
Msa0781620 MtrunA17_Chr3g0139671 37.000 100 61 2 10 109 31 128 6.60e-14 71.2
Msa0781620 MtrunA17_Chr8g0342461 48.193 83 42 1 3 84 5 87 3.07e-19 81.6
Msa0781620 MtrunA17_Chr2g0294811 43.210 81 46 0 4 84 6 86 3.15e-19 80.9
Msa0781620 MtrunA17_Chr8g0342471 48.193 83 42 1 3 84 5 87 6.63e-19 80.9
Msa0781620 MtrunA17_Chr7g0238651 40.741 108 60 3 12 117 7 112 2.10e-18 83.6
Msa0781620 MtrunA17_Chr7g0238631 38.983 118 64 4 12 124 113 227 2.97e-18 84.0
Msa0781620 MtrunA17_Chr7g0238631 35.714 98 61 2 12 109 61 156 4.66e-12 65.9
Msa0781620 MtrunA17_Chr5g0417621 39.640 111 61 4 7 114 129 236 3.42e-18 83.6
Msa0781620 MtrunA17_Chr7g0228481 42.056 107 58 4 12 118 220 322 4.28e-18 83.2
Msa0781620 MtrunA17_Chr4g0042501 42.056 107 54 5 12 114 105 207 5.00e-18 83.2
Msa0781620 MtrunA17_Chr7g0254261 43.434 99 53 3 12 110 89 184 4.57e-17 79.7
Msa0781620 MtrunA17_Chr7g0233061 37.607 117 62 5 5 118 173 281 5.19e-17 79.7
Msa0781620 MtrunA17_Chr1g0177901 30.159 189 111 6 22 194 4 187 1.49e-16 76.3
Msa0781620 MtrunA17_Chr6g0460671 37.391 115 69 3 12 126 99 210 3.18e-16 77.4
Msa0781620 MtrunA17_Chr5g0434901 45.588 68 35 2 46 113 9 74 1.62e-14 68.2
Msa0781620 MtrunA17_Chr7g0229131 35.000 100 63 2 42 141 4 101 1.74e-14 69.7
Msa0781620 MtrunA17_Chr3g0093811 40.625 96 51 4 35 126 4 97 2.26e-14 71.2
Msa0781620 MtrunA17_Chr7g0229101 44.444 72 38 2 42 113 4 73 4.91e-14 69.3
Msa0781620 MtrunA17_Chr8g0362231 33.981 103 65 3 15 117 25 124 1.11e-12 67.4
Msa0781620 MtrunA17_Chr5g0416341 35.922 103 63 3 15 117 29 128 1.28e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0781620 AT2G26960.1 45.283 159 73 3 12 158 22 178 6.56e-42 149
Msa0781620 AT2G32460.1 44.828 145 71 3 11 155 19 154 3.31e-39 142
Msa0781620 AT2G32460.2 44.828 145 71 3 11 155 7 142 3.40e-39 142
Msa0781620 AT5G55020.1 52.101 119 55 2 11 129 27 143 3.82e-38 140
Msa0781620 AT3G11440.2 51.240 121 57 2 11 131 42 160 2.68e-37 137
Msa0781620 AT5G06100.1 52.137 117 54 2 11 127 33 147 4.56e-37 136
Msa0781620 AT3G11440.3 44.099 161 82 4 11 165 42 200 6.44e-37 137
Msa0781620 AT3G11440.4 44.099 161 82 4 11 165 42 200 6.44e-37 137
Msa0781620 AT3G11440.1 44.099 161 82 4 11 165 42 200 6.44e-37 137
Msa0781620 AT5G56110.1 52.101 119 54 3 9 126 11 127 8.94e-37 132
Msa0781620 AT5G06100.5 52.137 117 54 2 11 127 33 147 1.09e-36 136
Msa0781620 AT5G06100.2 52.137 117 54 2 11 127 33 147 1.09e-36 136
Msa0781620 AT5G06100.3 52.137 117 54 2 11 127 33 147 1.09e-36 136
Msa0781620 AT5G06100.4 52.137 117 54 2 11 127 33 147 1.09e-36 136
Msa0781620 AT4G38620.1 44.872 156 79 5 8 160 10 161 1.17e-36 131
Msa0781620 AT4G26930.1 45.000 140 71 3 11 150 20 153 3.92e-36 132
Msa0781620 AT4G09460.1 44.371 151 79 4 8 155 10 158 9.78e-36 128
Msa0781620 AT4G01680.3 47.101 138 67 4 11 144 13 148 7.38e-35 125
Msa0781620 AT2G26950.1 50.862 116 55 2 12 127 18 131 1.14e-34 129
Msa0781620 AT5G26660.1 50.000 126 60 3 11 135 13 136 1.20e-34 128
Msa0781620 AT3G27810.1 50.442 113 54 2 6 118 16 126 4.02e-34 123
Msa0781620 AT4G01680.1 47.101 138 67 4 11 144 13 148 4.14e-34 126
Msa0781620 AT1G57560.2 46.528 144 70 4 11 149 13 154 5.18e-34 124
Msa0781620 AT1G35515.1 50.000 116 55 3 8 122 10 123 6.84e-34 122
Msa0781620 AT3G12720.1 48.760 121 59 3 10 129 22 140 7.23e-34 125
Msa0781620 AT4G21440.1 52.212 113 51 3 11 122 13 123 7.95e-34 125
Msa0781620 AT4G34990.1 46.377 138 69 4 10 146 12 145 1.06e-33 123
Msa0781620 AT1G57560.1 41.436 181 92 6 11 182 13 188 1.08e-33 124
Msa0781620 AT5G40350.1 51.402 107 50 2 8 114 15 119 1.19e-33 122
Msa0781620 AT5G54230.1 50.435 115 54 3 10 123 12 124 1.42e-33 124
Msa0781620 AT1G09540.1 53.097 113 50 3 11 122 13 123 2.26e-33 125
Msa0781620 AT3G61250.1 49.558 113 54 3 11 122 13 123 2.55e-33 123
Msa0781620 AT5G10280.1 49.587 121 58 3 11 130 13 131 2.70e-33 124
Msa0781620 AT1G22640.1 48.760 121 59 3 8 127 10 128 2.74e-33 122
Msa0781620 AT5G65230.1 48.062 129 64 3 4 131 6 132 4.04e-33 123
Msa0781620 AT4G28110.1 51.304 115 53 3 10 123 12 124 5.22e-33 122
Msa0781620 AT3G49690.1 55.556 108 45 3 8 114 10 115 1.24e-32 121
Msa0781620 AT4G05100.1 52.632 114 51 3 11 123 14 125 1.34e-32 122
Msa0781620 AT4G37780.1 52.212 113 49 4 10 119 12 122 2.41e-32 120
Msa0781620 AT5G16770.4 46.281 121 62 3 11 130 13 131 3.26e-32 120
Msa0781620 AT5G16770.3 46.281 121 62 3 11 130 13 131 3.26e-32 120
Msa0781620 AT1G18570.1 47.863 117 58 3 11 126 14 128 4.17e-32 121
Msa0781620 AT5G16770.1 46.281 121 62 3 11 130 13 131 6.02e-32 120
Msa0781620 AT5G16770.2 46.281 121 62 3 11 130 13 131 6.02e-32 120
Msa0781620 AT3G23250.1 49.533 107 51 3 11 116 13 117 6.27e-32 119
Msa0781620 AT2G16720.1 43.511 131 71 3 12 141 14 142 8.95e-32 118
Msa0781620 AT1G74080.1 46.457 127 65 3 11 136 13 137 9.90e-32 120
Msa0781620 AT3G01140.2 42.647 136 75 3 8 142 10 143 1.41e-31 119
Msa0781620 AT5G65790.1 55.556 108 45 3 8 114 10 115 1.41e-31 120
Msa0781620 AT3G01140.1 42.647 136 75 3 8 142 53 186 1.66e-31 120
Msa0781620 AT5G15310.4 45.238 126 66 3 11 135 13 136 1.89e-31 117
Msa0781620 AT4G17785.1 49.565 115 55 3 10 123 13 125 3.29e-31 119
Msa0781620 AT4G17785.2 49.565 115 55 3 10 123 13 125 3.53e-31 119
Msa0781620 AT3G01530.1 49.533 107 52 2 8 114 23 127 3.58e-31 115
Msa0781620 AT3G27920.1 50.962 104 49 2 11 114 15 116 3.77e-31 115
Msa0781620 AT5G12870.1 49.138 116 57 2 3 118 11 124 4.02e-31 117
Msa0781620 AT5G15310.1 45.238 126 66 3 11 135 13 136 4.19e-31 118
Msa0781620 AT5G15310.2 45.238 126 66 3 11 135 13 136 4.46e-31 117
Msa0781620 AT1G56160.1 50.476 105 50 2 10 114 14 116 4.60e-31 117
Msa0781620 AT5G14750.1 49.550 111 49 3 5 110 6 114 5.34e-31 114
Msa0781620 AT1G79180.1 43.151 146 74 4 10 148 14 157 5.74e-31 117
Msa0781620 AT5G16600.1 47.328 131 64 4 11 140 13 139 6.02e-31 117
Msa0781620 AT4G01680.2 43.333 150 67 5 11 144 13 160 6.40e-31 118
Msa0781620 AT3G02940.2 45.455 121 63 3 11 130 13 131 6.68e-31 117
Msa0781620 AT3G13890.2 47.321 112 57 2 3 114 5 114 1.10e-30 117
Msa0781620 AT5G61420.2 46.154 117 60 3 11 126 13 127 1.13e-30 117
Msa0781620 AT3G02940.1 45.455 121 63 3 11 130 13 131 1.33e-30 116
Msa0781620 AT3G02940.3 45.455 121 63 3 11 130 13 131 1.33e-30 116
Msa0781620 AT3G08500.1 49.533 107 52 2 11 117 31 135 1.51e-30 117
Msa0781620 AT2G47190.1 47.273 110 56 2 8 117 18 125 1.52e-30 115
Msa0781620 AT3G12820.1 48.214 112 55 3 8 118 12 121 1.52e-30 114
Msa0781620 AT1G16490.1 49.524 105 51 2 10 114 14 116 1.74e-30 115
Msa0781620 AT1G74430.1 44.737 114 60 3 11 123 13 124 1.98e-30 115
Msa0781620 AT5G40330.1 48.077 104 52 2 11 114 13 114 2.28e-30 113
Msa0781620 AT5G52600.1 43.478 138 66 4 10 137 12 147 2.41e-30 112
Msa0781620 AT3G13540.1 39.706 136 72 4 11 138 24 157 4.24e-30 113
Msa0781620 AT5G57620.1 53.097 113 49 4 8 118 10 120 4.26e-30 115
Msa0781620 AT1G68320.1 46.296 108 56 2 11 118 20 125 5.03e-30 114
Msa0781620 AT5G14340.1 46.154 117 60 3 11 126 25 139 5.96e-30 114
Msa0781620 AT5G07690.1 47.009 117 59 3 11 126 13 127 6.00e-30 115
Msa0781620 AT1G48000.1 46.789 109 56 2 9 117 31 137 6.45e-30 113
Msa0781620 AT5G07700.1 46.154 117 60 3 11 126 13 127 6.68e-30 115
Msa0781620 AT5G07700.2 46.154 117 60 3 11 126 13 127 6.68e-30 115
Msa0781620 AT3G28470.1 50.485 103 49 2 8 110 10 110 7.72e-30 114
Msa0781620 AT1G34670.1 49.123 114 55 3 11 123 13 124 7.79e-30 115
Msa0781620 AT1G25340.1 45.045 111 59 2 8 118 16 124 9.24e-30 113
Msa0781620 AT1G18710.1 42.609 115 63 3 11 124 13 125 1.05e-29 113
Msa0781620 AT5G60890.1 46.154 117 60 3 11 126 13 127 1.09e-29 113
Msa0781620 AT1G06180.1 50.000 104 50 2 11 114 13 114 1.11e-29 112
Msa0781620 AT1G66230.1 46.457 127 61 4 11 132 13 137 1.15e-29 113
Msa0781620 AT2G31180.1 44.643 112 60 2 10 121 12 121 1.87e-29 112
Msa0781620 AT4G22680.1 41.935 155 83 5 10 160 12 163 2.16e-29 112
Msa0781620 AT2G36890.1 46.610 118 60 3 8 124 10 125 2.51e-29 112
Msa0781620 AT1G63910.1 47.414 116 58 3 3 117 5 118 2.83e-29 114
Msa0781620 AT2G36890.2 46.610 118 60 3 8 124 51 166 4.95e-29 112
Msa0781620 AT5G62320.1 43.796 137 67 4 11 139 14 148 6.70e-29 110
Msa0781620 AT3G24310.1 48.598 107 53 2 11 117 19 123 1.11e-28 110
Msa0781620 AT5G23000.1 51.887 106 48 3 10 114 12 115 1.29e-28 111
Msa0781620 AT4G13480.1 49.533 107 52 2 11 117 7 111 1.38e-28 110
Msa0781620 AT1G74650.1 46.226 106 55 2 9 114 11 114 1.92e-28 111
Msa0781620 AT1G08810.1 49.074 108 52 3 11 117 13 118 2.15e-28 109
Msa0781620 AT3G28910.1 48.624 109 53 3 10 117 12 118 2.83e-28 110
Msa0781620 AT2G47460.1 49.057 106 51 3 11 115 13 116 3.15e-28 111
Msa0781620 AT3G62610.1 48.113 106 52 3 11 115 13 116 6.33e-28 110
Msa0781620 AT3G47600.1 47.706 109 54 3 10 117 12 118 6.49e-28 109
Msa0781620 AT3G13890.1 43.802 121 57 3 3 114 5 123 1.02e-27 109
Msa0781620 AT5G62470.2 47.706 109 54 3 10 117 12 118 1.36e-27 109
Msa0781620 AT3G30210.1 46.729 107 55 2 11 117 28 132 1.55e-27 107
Msa0781620 AT5G49330.1 47.000 100 51 2 11 110 13 110 2.03e-27 108
Msa0781620 AT3G60460.1 45.455 110 57 3 9 117 10 117 2.69e-27 107
Msa0781620 AT5G59780.3 46.087 115 57 3 11 122 9 121 9.09e-27 104
Msa0781620 AT5G35550.1 42.857 112 62 2 3 114 7 116 1.17e-26 104
Msa0781620 AT5G62470.1 47.706 109 53 4 10 117 12 117 2.55e-26 105
Msa0781620 AT3G46130.1 45.217 115 58 3 11 122 10 122 2.67e-26 103
Msa0781620 AT4G12350.1 47.368 114 57 3 10 122 12 123 3.31e-26 104
Msa0781620 AT3G06490.1 48.182 110 55 2 9 118 18 125 5.83e-26 104
Msa0781620 AT1G79180.2 35.754 179 73 5 10 148 14 190 1.22e-25 103
Msa0781620 AT3G53200.1 47.115 104 53 2 11 114 10 111 1.26e-25 101
Msa0781620 AT1G25340.2 42.342 111 57 3 8 118 16 119 1.45e-25 102
Msa0781620 AT1G25340.3 43.925 107 53 3 8 114 16 115 2.00e-25 102
Msa0781620 AT5G49620.1 46.364 110 57 2 9 118 25 132 2.52e-25 102
Msa0781620 AT4G18770.1 48.544 103 50 3 12 114 217 316 5.33e-25 103
Msa0781620 AT1G56650.1 39.535 129 67 3 5 124 3 129 6.49e-25 100
Msa0781620 AT5G26660.2 50.000 94 44 3 43 135 14 105 7.63e-25 101
Msa0781620 AT3G27785.1 42.982 114 62 3 5 118 182 292 1.05e-24 102
Msa0781620 AT5G40360.1 48.077 104 51 3 12 115 158 258 1.20e-24 101
Msa0781620 AT3G48920.1 44.037 109 59 2 6 114 14 120 1.89e-24 99.0
Msa0781620 AT5G52260.1 47.368 114 55 3 11 124 13 121 3.00e-24 98.6
Msa0781620 AT4G25560.1 46.154 104 54 2 11 114 11 112 3.71e-24 98.6
Msa0781620 AT1G66380.1 44.340 106 57 2 5 110 3 106 4.88e-24 94.7
Msa0781620 AT5G49620.2 42.276 123 57 2 9 118 25 146 1.18e-23 98.2
Msa0781620 AT3G50060.1 44.737 114 60 3 8 121 2 112 2.02e-23 97.1
Msa0781620 AT1G66370.1 43.000 100 55 2 11 110 9 106 2.67e-23 95.5
Msa0781620 AT1G66390.1 42.727 110 61 2 5 114 3 110 6.03e-23 94.7
Msa0781620 AT5G58850.1 47.273 110 53 4 6 114 99 204 9.16e-23 97.1
Msa0781620 AT5G67300.1 48.148 108 52 4 8 114 2 106 4.44e-22 93.6
Msa0781620 AT4G37260.1 45.946 111 56 4 12 121 13 120 6.44e-22 93.2
Msa0781620 AT2G23290.1 45.133 113 58 4 3 114 4 113 1.36e-21 92.0
Msa0781620 AT1G17950.1 30.808 198 121 8 12 203 5 192 2.22e-21 90.5
Msa0781620 AT5G17800.1 37.838 148 83 5 2 143 80 224 2.39e-21 91.7
Msa0781620 AT5G40350.2 52.703 74 33 2 41 114 3 74 2.99e-21 88.2
Msa0781620 AT3G27810.2 52.632 76 34 2 43 118 4 77 3.26e-21 88.2
Msa0781620 AT2G25230.1 44.538 119 60 5 8 124 22 136 6.79e-21 89.0
Msa0781620 AT3G09230.1 43.396 106 57 3 9 114 52 154 9.06e-21 90.9
Msa0781620 AT5G11050.1 46.154 104 51 4 12 114 105 204 1.05e-20 91.3
Msa0781620 AT1G69560.2 42.056 107 57 4 5 110 116 218 2.01e-20 89.4
Msa0781620 AT1G69560.1 40.566 106 60 3 5 110 100 202 2.12e-20 89.4
Msa0781620 AT2G39880.1 47.573 103 51 3 12 114 50 149 3.39e-20 89.0
Msa0781620 AT3G55730.1 44.660 103 54 3 12 114 56 155 3.93e-20 89.4
Msa0781620 AT4G32730.1 41.525 118 65 4 12 128 87 201 7.50e-20 89.4
Msa0781620 AT4G32730.1 34.579 107 68 2 3 109 26 130 1.14e-13 71.2
Msa0781620 AT4G32730.5 41.525 118 65 4 12 128 87 201 7.66e-20 89.4
Msa0781620 AT4G32730.5 34.579 107 68 2 3 109 26 130 1.06e-13 71.2
Msa0781620 AT4G32730.4 41.525 118 65 4 12 128 87 201 7.66e-20 89.4
Msa0781620 AT4G32730.4 34.579 107 68 2 3 109 26 130 1.06e-13 71.2
Msa0781620 AT4G32730.3 41.525 118 65 4 12 128 87 201 7.66e-20 89.4
Msa0781620 AT4G32730.3 34.579 107 68 2 3 109 26 130 1.06e-13 71.2
Msa0781620 AT4G32730.2 41.525 118 65 4 12 128 87 201 7.66e-20 89.4
Msa0781620 AT4G32730.2 34.579 107 68 2 3 109 26 130 1.06e-13 71.2
Msa0781620 AT4G33450.1 39.344 122 63 5 1 114 3 121 1.03e-19 85.9
Msa0781620 AT1G73410.2 35.503 169 88 7 12 166 6 167 1.29e-19 84.7
Msa0781620 AT3G53200.2 54.167 72 31 2 43 114 9 78 1.31e-19 84.7
Msa0781620 AT3G12820.2 52.000 75 33 3 45 118 1 73 2.08e-19 84.0
Msa0781620 AT1G73410.1 35.503 169 88 7 12 166 6 167 3.20e-19 84.3
Msa0781620 AT3G09370.3 30.348 201 125 7 9 201 140 333 8.81e-19 85.9
Msa0781620 AT3G09370.3 38.776 98 58 2 12 109 91 186 1.12e-13 70.9
Msa0781620 AT3G09370.2 30.348 201 125 7 9 201 132 325 1.04e-18 85.9
Msa0781620 AT3G09370.2 38.776 98 58 2 12 109 83 178 1.00e-13 70.9
Msa0781620 AT3G09370.1 30.348 201 125 7 9 201 127 320 1.16e-18 85.5
Msa0781620 AT3G09370.1 38.776 98 58 2 12 109 78 173 1.20e-13 70.9
Msa0781620 AT5G11510.3 39.806 103 59 3 12 114 81 180 1.77e-18 85.5
Msa0781620 AT5G11510.3 32.710 107 70 2 3 109 20 124 1.89e-12 67.4
Msa0781620 AT5G11510.1 39.806 103 59 3 12 114 81 180 1.77e-18 85.5
Msa0781620 AT5G11510.1 32.710 107 70 2 3 109 20 124 1.89e-12 67.4
Msa0781620 AT5G11510.4 39.806 103 59 3 12 114 81 180 1.77e-18 85.5
Msa0781620 AT5G11510.4 32.710 107 70 2 3 109 20 124 1.89e-12 67.4
Msa0781620 AT5G11510.2 39.806 103 59 3 12 114 81 180 1.85e-18 85.1
Msa0781620 AT5G11510.2 32.710 107 70 2 3 109 20 124 1.88e-12 67.4
Msa0781620 AT5G11510.5 39.806 103 59 3 12 114 81 180 1.88e-18 85.1
Msa0781620 AT5G11510.5 32.710 107 70 2 3 109 20 124 1.79e-12 67.4
Msa0781620 AT3G46130.3 48.235 85 39 3 41 122 8 90 1.96e-18 82.0
Msa0781620 AT1G26780.1 42.000 100 53 4 12 110 98 193 2.00e-18 83.2
Msa0781620 AT5G14750.3 48.571 70 34 2 45 114 17 84 2.15e-18 80.5
Msa0781620 AT5G02320.1 41.509 106 58 4 12 116 127 229 2.39e-18 84.7
Msa0781620 AT5G02320.1 37.755 98 59 2 12 109 75 170 2.60e-13 69.7
Msa0781620 AT5G02320.2 41.509 106 58 4 12 116 127 229 2.39e-18 84.7
Msa0781620 AT5G02320.2 37.755 98 59 2 12 109 75 170 2.60e-13 69.7
Msa0781620 AT1G26780.2 40.566 106 57 4 12 114 98 200 2.90e-18 83.6
Msa0781620 AT5G02320.3 41.509 106 58 4 12 116 67 169 3.13e-18 84.3
Msa0781620 AT5G02320.3 37.755 98 59 2 12 109 15 110 3.20e-13 69.3
Msa0781620 AT5G59780.2 49.398 83 37 3 43 122 20 100 4.21e-18 80.9
Msa0781620 AT3G46130.4 49.398 83 37 3 43 122 20 100 6.33e-18 80.9
Msa0781620 AT2G37630.1 40.650 123 68 4 12 132 4 123 1.07e-17 82.0
Msa0781620 AT5G40430.1 40.708 113 61 5 8 119 50 157 3.11e-17 79.3
Msa0781620 AT5G35550.2 50.000 72 34 2 43 114 50 119 4.26e-17 79.0
Msa0781620 AT3G29020.1 38.053 113 64 4 5 114 58 167 8.55e-17 77.8
Msa0781620 AT3G29020.2 36.441 118 71 4 5 121 60 174 1.21e-16 78.6
Msa0781620 AT4G00540.2 40.541 111 59 5 11 117 102 209 1.37e-16 79.3
Msa0781620 AT1G66380.2 47.761 67 35 0 6 72 4 70 1.55e-16 73.9
Msa0781620 AT4G00540.1 40.541 111 59 5 11 117 100 207 1.61e-16 79.0
Msa0781620 AT3G47600.2 48.684 76 36 3 43 117 39 112 2.19e-16 77.8
Msa0781620 AT1G66380.3 49.275 69 33 2 42 110 7 73 9.72e-15 68.9
Msa0781620 AT3G18100.1 39.394 99 57 3 10 108 544 639 7.54e-13 68.6
Msa0781620 AT3G18100.3 39.394 99 57 3 10 108 496 591 8.14e-13 68.6
Msa0781620 AT3G18100.4 39.394 99 57 3 10 108 383 478 1.15e-12 68.2
Msa0781620 AT3G18100.2 39.394 99 57 3 10 108 331 426 1.16e-12 68.2
Msa0781620 AT1G14350.2 34.951 103 64 3 15 117 28 127 2.82e-12 66.6
Msa0781620 AT1G14350.1 34.951 103 64 3 15 117 28 127 2.82e-12 66.6
Msa0781620 AT2G02820.2 34.951 103 64 3 15 117 33 132 3.05e-12 66.6
Msa0781620 AT2G02820.1 34.951 103 64 3 15 117 33 132 3.96e-12 66.2
Msa0781620 AT2G02820.3 36.957 92 55 3 15 106 33 121 8.83e-12 64.7
Msa0781620 AT5G39700.1 36.000 100 61 3 11 110 55 151 3.59e-11 61.2
Msa0781620 AT1G71030.2 32.323 99 64 3 49 146 5 101 6.08e-11 60.5
Msa0781620 AT1G71030.1 32.323 99 64 3 49 146 19 115 8.53e-11 60.5

Find 50 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGATACCTCGTTCCAATTTC+TGG 0.078607 5_2:+64181188 None:intergenic
TAATATTTCATCTTCTTCTT+TGG 0.201233 5_2:+64181236 None:intergenic
GATTTCAGGGGTAGCATTAT+TGG 0.227047 5_2:-64180639 Msa0781620:CDS
CCTACAACCAGATGTGAAAA+AGG 0.249095 5_2:-64181109 Msa0781620:CDS
ATGTATTGACTTCAGTAATT+TGG 0.259715 5_2:-64180427 Msa0781620:CDS
TCAGTATCATGGTGACTTTA+TGG 0.269513 5_2:-64180535 Msa0781620:CDS
ATAATGACATCAAGAACTTT+TGG 0.308735 5_2:-64180845 Msa0781620:CDS
CTTGTGAATCCTCAACTTGT+TGG 0.318952 5_2:+64180739 None:intergenic
ATGGTCTAAGCTGGCTGATC+AGG 0.359655 5_2:-64181022 Msa0781620:CDS
AAAACCATGGAACCAGAAAT+TGG 0.371902 5_2:-64181200 Msa0781620:CDS
AAACCTCCTTGATGACTTCA+TGG 0.396227 5_2:-64180460 Msa0781620:CDS
ATGTCATTATCGCTTCTTCC+CGG 0.399929 5_2:+64180858 None:intergenic
CGTTCCAATTTCTGGTTCCA+TGG 0.417198 5_2:+64181196 None:intergenic
TCATCCGGTTCCATCTTGTC+AGG 0.436579 5_2:+64180777 None:intergenic
TCCTCAAATTCCACCACCTA+TGG 0.442042 5_2:-64180562 Msa0781620:CDS
GGATAGTCACCAAGCATCAT+AGG 0.444307 5_2:+64180582 None:intergenic
TGAAATATTAAAAGCATATG+TGG 0.459693 5_2:-64181223 Msa0781620:CDS
TCCATAGGTGGTGGAATTTG+AGG 0.460831 5_2:+64180561 None:intergenic
AAAAGTATGGTGAATTCAAA+TGG 0.466521 5_2:-64181041 Msa0781620:CDS
CTACTATTCAACTCATCATC+CGG 0.471736 5_2:+64180762 None:intergenic
TGGAACTTCTCATATACCTA+TGG 0.477216 5_2:-64180619 Msa0781620:CDS
CTTCCTTCACCTATGATGCT+TGG 0.481674 5_2:-64180591 Msa0781620:CDS
GTCACCCTTCCCTGACAAGA+TGG 0.495250 5_2:-64180787 Msa0781620:CDS
GTAAAAGTTGTCGTCTAAGA+TGG 0.497716 5_2:-64181140 Msa0781620:CDS
TATTGACTTCAGTAATTTGG+AGG 0.499792 5_2:-64180424 Msa0781620:CDS
CGGTTCCATCTTGTCAGGGA+AGG 0.508810 5_2:+64180782 None:intergenic
CTTCCCTGACAAGATGGAAC+CGG 0.509188 5_2:-64180781 Msa0781620:CDS
TTGGAGGACGATGTTGAAGC+CGG 0.528092 5_2:-64180408 Msa0781620:CDS
TACTGAGTCTCCATAGGTGG+TGG 0.534844 5_2:+64180552 None:intergenic
GAATAGTAGCCAACAAGTTG+AGG 0.541704 5_2:-64180748 Msa0781620:CDS
ATTTGTATTCGTCAGTTACC+GGG 0.569731 5_2:-64180876 Msa0781620:intron
AGCATCATAGGTGAAGGAAG+TGG 0.575321 5_2:+64180594 None:intergenic
TGAATTCAAATGGTCTAAGC+TGG 0.578323 5_2:-64181031 Msa0781620:CDS
CCTATGGAGACTCAGTATCA+TGG 0.585538 5_2:-64180546 Msa0781620:CDS
CCATGATACTGAGTCTCCAT+AGG 0.586617 5_2:+64180546 None:intergenic
GGTGAAGGAAGTGGAGCCAT+AGG 0.590422 5_2:+64180603 None:intergenic
GTCTAAGCTGGCTGATCAGG+AGG 0.591282 5_2:-64181019 Msa0781620:intron
ATGGATCCATGAAGTCATCA+AGG 0.595005 5_2:+64180454 None:intergenic
TCACCAAGCATCATAGGTGA+AGG 0.597667 5_2:+64180588 None:intergenic
GGTTCCATCTTGTCAGGGAA+GGG 0.605286 5_2:+64180783 None:intergenic
CTGAAGTCAATACATAGACA+TGG 0.618549 5_2:+64180435 None:intergenic
AAAGCATATGTGGAAAACCA+TGG 0.619332 5_2:-64181213 Msa0781620:CDS
CATCCGGTTCCATCTTGTCA+GGG 0.638065 5_2:+64180778 None:intergenic
GAGGACGATGTTGAAGCCGG+CGG 0.660817 5_2:-64180405 Msa0781620:CDS
AAACGAAAACTTGAAAAGCG+TGG 0.664372 5_2:-64180813 Msa0781620:CDS
ACTGTCAAATAAACGACCGC+CGG 0.667707 5_2:+64180389 None:intergenic
TGATACTGAGTCTCCATAGG+TGG 0.687296 5_2:+64180549 None:intergenic
AATGCGGGGCTTATACGTTG+CGG 0.693414 5_2:-64181162 Msa0781620:CDS
GATCCATGAAGTCATCAAGG+AGG 0.752147 5_2:+64180457 None:intergenic
TGGAACCAGAAATTGGAACG+AGG 0.771577 5_2:-64181193 Msa0781620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTCTAAATTTCAATTG+TGG + chr5_2:64180954-64180973 None:intergenic 15.0%
!!! TATTTTCTAAATTTCAATTG+TGG + chr5_2:64180954-64180973 None:intergenic 15.0%
!! TAATATTTCATCTTCTTCTT+TGG + chr5_2:64180417-64180436 None:intergenic 20.0%
!!! TGAAATATTAAAAGCATATG+TGG - chr5_2:64180427-64180446 Msa0781620:CDS 20.0%
!!! TTTGAGTTCTATAAAAAGTA+TGG - chr5_2:64180596-64180615 Msa0781620:CDS 20.0%
!! TTTATCTCATCAAAAATTGA+TGG + chr5_2:64180978-64180997 None:intergenic 20.0%
!!! ATGAAAAACTTTTAGATTTC+AGG - chr5_2:64180997-64181016 Msa0781620:intron 20.0%
!!! TGAAAAACTTTTAGATTTCA+GGG - chr5_2:64180998-64181017 Msa0781620:intron 20.0%
!! TAATATTTCATCTTCTTCTT+TGG + chr5_2:64180417-64180436 None:intergenic 20.0%
!!! TGAAATATTAAAAGCATATG+TGG - chr5_2:64180427-64180446 Msa0781620:CDS 20.0%
!!! TTTGAGTTCTATAAAAAGTA+TGG - chr5_2:64180596-64180615 Msa0781620:CDS 20.0%
!! TTTATCTCATCAAAAATTGA+TGG + chr5_2:64180978-64180997 None:intergenic 20.0%
!!! ATGAAAAACTTTTAGATTTC+AGG - chr5_2:64180997-64181016 Msa0781620:intron 20.0%
!!! TGAAAAACTTTTAGATTTCA+GGG - chr5_2:64180998-64181017 Msa0781620:intron 20.0%
!!! CCATTTTCCTTTTTTAGTAT+CGG + chr5_2:64180393-64180412 None:intergenic 25.0%
!!! GTTTTTTCTTCTTCACTAAA+TGG + chr5_2:64180569-64180588 None:intergenic 25.0%
!! AAAAGTATGGTGAATTCAAA+TGG - chr5_2:64180609-64180628 Msa0781620:CDS 25.0%
! GATCAACAAAATAATCAACA+AGG + chr5_2:64180745-64180764 None:intergenic 25.0%
!! ATAATGACATCAAGAACTTT+TGG - chr5_2:64180805-64180824 Msa0781620:CDS 25.0%
!! GAAAAACTTTTAGATTTCAG+GGG - chr5_2:64180999-64181018 Msa0781620:intron 25.0%
!!! ATGTATTGACTTCAGTAATT+TGG - chr5_2:64181223-64181242 Msa0781620:CDS 25.0%
!!! CCATTTTCCTTTTTTAGTAT+CGG + chr5_2:64180393-64180412 None:intergenic 25.0%
!!! GTTTTTTCTTCTTCACTAAA+TGG + chr5_2:64180569-64180588 None:intergenic 25.0%
!! AAAAGTATGGTGAATTCAAA+TGG - chr5_2:64180609-64180628 Msa0781620:CDS 25.0%
! GATCAACAAAATAATCAACA+AGG + chr5_2:64180745-64180764 None:intergenic 25.0%
!! ATAATGACATCAAGAACTTT+TGG - chr5_2:64180805-64180824 Msa0781620:CDS 25.0%
!! GAAAAACTTTTAGATTTCAG+GGG - chr5_2:64180999-64181018 Msa0781620:intron 25.0%
!!! ATGTATTGACTTCAGTAATT+TGG - chr5_2:64181223-64181242 Msa0781620:CDS 25.0%
!!! TTTTCCTTTTTTAGTATCGG+CGG + chr5_2:64180390-64180409 None:intergenic 30.0%
CCGATACTAAAAAAGGAAAA+TGG - chr5_2:64180390-64180409 Msa0781620:CDS 30.0%
AATTTGTATTCGTCAGTTAC+CGG - chr5_2:64180773-64180792 Msa0781620:CDS 30.0%
! ACTTTATGGATCCAGATTTT+TGG - chr5_2:64181129-64181148 Msa0781620:CDS 30.0%
!! TATTGACTTCAGTAATTTGG+AGG - chr5_2:64181226-64181245 Msa0781620:CDS 30.0%
!!! TTTTCCTTTTTTAGTATCGG+CGG + chr5_2:64180390-64180409 None:intergenic 30.0%
CCGATACTAAAAAAGGAAAA+TGG - chr5_2:64180390-64180409 Msa0781620:CDS 30.0%
AATTTGTATTCGTCAGTTAC+CGG - chr5_2:64180773-64180792 Msa0781620:CDS 30.0%
! ACTTTATGGATCCAGATTTT+TGG - chr5_2:64181129-64181148 Msa0781620:CDS 30.0%
!! TATTGACTTCAGTAATTTGG+AGG - chr5_2:64181226-64181245 Msa0781620:CDS 30.0%
AAAGCATATGTGGAAAACCA+TGG - chr5_2:64180437-64180456 Msa0781620:CDS 35.0%
AAAACCATGGAACCAGAAAT+TGG - chr5_2:64180450-64180469 Msa0781620:CDS 35.0%
GTAAAAGTTGTCGTCTAAGA+TGG - chr5_2:64180510-64180529 Msa0781620:CDS 35.0%
CTACAACCAGATGTGAAAAA+GGG - chr5_2:64180542-64180561 Msa0781620:CDS 35.0%
TGAATTCAAATGGTCTAAGC+TGG - chr5_2:64180619-64180638 Msa0781620:CDS 35.0%
CATGTGGTGAATATCATAGA+AGG + chr5_2:64180715-64180734 None:intergenic 35.0%
TCAACAAGGTATAACACATG+TGG + chr5_2:64180731-64180750 None:intergenic 35.0%
ATTTGTATTCGTCAGTTACC+GGG - chr5_2:64180774-64180793 Msa0781620:CDS 35.0%
AAACGAAAACTTGAAAAGCG+TGG - chr5_2:64180837-64180856 Msa0781620:CDS 35.0%
CTACTATTCAACTCATCATC+CGG + chr5_2:64180891-64180910 None:intergenic 35.0%
TGGAACTTCTCATATACCTA+TGG - chr5_2:64181031-64181050 Msa0781620:CDS 35.0%
TCAGTATCATGGTGACTTTA+TGG - chr5_2:64181115-64181134 Msa0781620:CDS 35.0%
CTGTTGTGAAACCAAAAATC+TGG + chr5_2:64181143-64181162 None:intergenic 35.0%
CTGAAGTCAATACATAGACA+TGG + chr5_2:64181218-64181237 None:intergenic 35.0%
AAAGCATATGTGGAAAACCA+TGG - chr5_2:64180437-64180456 Msa0781620:CDS 35.0%
AAAACCATGGAACCAGAAAT+TGG - chr5_2:64180450-64180469 Msa0781620:CDS 35.0%
GTAAAAGTTGTCGTCTAAGA+TGG - chr5_2:64180510-64180529 Msa0781620:CDS 35.0%
CTACAACCAGATGTGAAAAA+GGG - chr5_2:64180542-64180561 Msa0781620:CDS 35.0%
TGAATTCAAATGGTCTAAGC+TGG - chr5_2:64180619-64180638 Msa0781620:CDS 35.0%
CATGTGGTGAATATCATAGA+AGG + chr5_2:64180715-64180734 None:intergenic 35.0%
TCAACAAGGTATAACACATG+TGG + chr5_2:64180731-64180750 None:intergenic 35.0%
ATTTGTATTCGTCAGTTACC+GGG - chr5_2:64180774-64180793 Msa0781620:CDS 35.0%
AAACGAAAACTTGAAAAGCG+TGG - chr5_2:64180837-64180856 Msa0781620:CDS 35.0%
CTACTATTCAACTCATCATC+CGG + chr5_2:64180891-64180910 None:intergenic 35.0%
TGGAACTTCTCATATACCTA+TGG - chr5_2:64181031-64181050 Msa0781620:CDS 35.0%
TCAGTATCATGGTGACTTTA+TGG - chr5_2:64181115-64181134 Msa0781620:CDS 35.0%
CTGTTGTGAAACCAAAAATC+TGG + chr5_2:64181143-64181162 None:intergenic 35.0%
CTGAAGTCAATACATAGACA+TGG + chr5_2:64181218-64181237 None:intergenic 35.0%
TCATCCGCCGATACTAAAAA+AGG - chr5_2:64180383-64180402 Msa0781620:CDS 40.0%
!! GAACGAGGTATCGAAAAATG+CGG - chr5_2:64180472-64180491 Msa0781620:CDS 40.0%
!! AACGAGGTATCGAAAAATGC+GGG - chr5_2:64180473-64180492 Msa0781620:CDS 40.0%
!! CCTTTTTCACATCTGGTTGT+AGG + chr5_2:64180544-64180563 None:intergenic 40.0%
CCTACAACCAGATGTGAAAA+AGG - chr5_2:64180541-64180560 Msa0781620:CDS 40.0%
!! AATGGACCCTTTTTCACATC+TGG + chr5_2:64180551-64180570 None:intergenic 40.0%
ATGTCATTATCGCTTCTTCC+CGG + chr5_2:64180795-64180814 None:intergenic 40.0%
GAATAGTAGCCAACAAGTTG+AGG - chr5_2:64180902-64180921 Msa0781620:intron 40.0%
CTTGTGAATCCTCAACTTGT+TGG + chr5_2:64180914-64180933 None:intergenic 40.0%
GATTTCAGGGGTAGCATTAT+TGG - chr5_2:64181011-64181030 Msa0781620:intron 40.0%
! AAACCTCCTTGATGACTTCA+TGG - chr5_2:64181190-64181209 Msa0781620:CDS 40.0%
ATGGATCCATGAAGTCATCA+AGG + chr5_2:64181199-64181218 None:intergenic 40.0%
TCATCCGCCGATACTAAAAA+AGG - chr5_2:64180383-64180402 Msa0781620:CDS 40.0%
!! GAACGAGGTATCGAAAAATG+CGG - chr5_2:64180472-64180491 Msa0781620:CDS 40.0%
!! AACGAGGTATCGAAAAATGC+GGG - chr5_2:64180473-64180492 Msa0781620:CDS 40.0%
!! CCTTTTTCACATCTGGTTGT+AGG + chr5_2:64180544-64180563 None:intergenic 40.0%
CCTACAACCAGATGTGAAAA+AGG - chr5_2:64180541-64180560 Msa0781620:CDS 40.0%
!! AATGGACCCTTTTTCACATC+TGG + chr5_2:64180551-64180570 None:intergenic 40.0%
ATGTCATTATCGCTTCTTCC+CGG + chr5_2:64180795-64180814 None:intergenic 40.0%
GAATAGTAGCCAACAAGTTG+AGG - chr5_2:64180902-64180921 Msa0781620:intron 40.0%
CTTGTGAATCCTCAACTTGT+TGG + chr5_2:64180914-64180933 None:intergenic 40.0%
GATTTCAGGGGTAGCATTAT+TGG - chr5_2:64181011-64181030 Msa0781620:intron 40.0%
! AAACCTCCTTGATGACTTCA+TGG - chr5_2:64181190-64181209 Msa0781620:CDS 40.0%
ATGGATCCATGAAGTCATCA+AGG + chr5_2:64181199-64181218 None:intergenic 40.0%
!! CGTTCCAATTTCTGGTTCCA+TGG + chr5_2:64180457-64180476 None:intergenic 45.0%
TGGAACCAGAAATTGGAACG+AGG - chr5_2:64180457-64180476 Msa0781620:CDS 45.0%
CGATACCTCGTTCCAATTTC+TGG + chr5_2:64180465-64180484 None:intergenic 45.0%
!! ACGAGGTATCGAAAAATGCG+GGG - chr5_2:64180474-64180493 Msa0781620:CDS 45.0%
AGCATCATAGGTGAAGGAAG+TGG + chr5_2:64181059-64181078 None:intergenic 45.0%
CTTCCTTCACCTATGATGCT+TGG - chr5_2:64181059-64181078 Msa0781620:CDS 45.0%
TCACCAAGCATCATAGGTGA+AGG + chr5_2:64181065-64181084 None:intergenic 45.0%
GGATAGTCACCAAGCATCAT+AGG + chr5_2:64181071-64181090 None:intergenic 45.0%
TCCTCAAATTCCACCACCTA+TGG - chr5_2:64181088-64181107 Msa0781620:CDS 45.0%
!! TCCATAGGTGGTGGAATTTG+AGG + chr5_2:64181092-64181111 None:intergenic 45.0%
TGATACTGAGTCTCCATAGG+TGG + chr5_2:64181104-64181123 None:intergenic 45.0%
CCATGATACTGAGTCTCCAT+AGG + chr5_2:64181107-64181126 None:intergenic 45.0%
CCTATGGAGACTCAGTATCA+TGG - chr5_2:64181104-64181123 Msa0781620:CDS 45.0%
GATCCATGAAGTCATCAAGG+AGG + chr5_2:64181196-64181215 None:intergenic 45.0%
ACTGTCAAATAAACGACCGC+CGG + chr5_2:64181264-64181283 None:intergenic 45.0%
!! CGTTCCAATTTCTGGTTCCA+TGG + chr5_2:64180457-64180476 None:intergenic 45.0%
TGGAACCAGAAATTGGAACG+AGG - chr5_2:64180457-64180476 Msa0781620:CDS 45.0%
CGATACCTCGTTCCAATTTC+TGG + chr5_2:64180465-64180484 None:intergenic 45.0%
!! ACGAGGTATCGAAAAATGCG+GGG - chr5_2:64180474-64180493 Msa0781620:CDS 45.0%
AGCATCATAGGTGAAGGAAG+TGG + chr5_2:64181059-64181078 None:intergenic 45.0%
CTTCCTTCACCTATGATGCT+TGG - chr5_2:64181059-64181078 Msa0781620:CDS 45.0%
TCACCAAGCATCATAGGTGA+AGG + chr5_2:64181065-64181084 None:intergenic 45.0%
GGATAGTCACCAAGCATCAT+AGG + chr5_2:64181071-64181090 None:intergenic 45.0%
TCCTCAAATTCCACCACCTA+TGG - chr5_2:64181088-64181107 Msa0781620:CDS 45.0%
!! TCCATAGGTGGTGGAATTTG+AGG + chr5_2:64181092-64181111 None:intergenic 45.0%
TGATACTGAGTCTCCATAGG+TGG + chr5_2:64181104-64181123 None:intergenic 45.0%
CCATGATACTGAGTCTCCAT+AGG + chr5_2:64181107-64181126 None:intergenic 45.0%
CCTATGGAGACTCAGTATCA+TGG - chr5_2:64181104-64181123 Msa0781620:CDS 45.0%
GATCCATGAAGTCATCAAGG+AGG + chr5_2:64181196-64181215 None:intergenic 45.0%
ACTGTCAAATAAACGACCGC+CGG + chr5_2:64181264-64181283 None:intergenic 45.0%
AATGCGGGGCTTATACGTTG+CGG - chr5_2:64180488-64180507 Msa0781620:CDS 50.0%
ATGGTCTAAGCTGGCTGATC+AGG - chr5_2:64180628-64180647 Msa0781620:CDS 50.0%
GGTTCCATCTTGTCAGGGAA+GGG + chr5_2:64180870-64180889 None:intergenic 50.0%
CTTCCCTGACAAGATGGAAC+CGG - chr5_2:64180869-64180888 Msa0781620:intron 50.0%
CATCCGGTTCCATCTTGTCA+GGG + chr5_2:64180875-64180894 None:intergenic 50.0%
TCATCCGGTTCCATCTTGTC+AGG + chr5_2:64180876-64180895 None:intergenic 50.0%
TACTGAGTCTCCATAGGTGG+TGG + chr5_2:64181101-64181120 None:intergenic 50.0%
TTGGAGGACGATGTTGAAGC+CGG - chr5_2:64181242-64181261 Msa0781620:CDS 50.0%
AATGCGGGGCTTATACGTTG+CGG - chr5_2:64180488-64180507 Msa0781620:CDS 50.0%
ATGGTCTAAGCTGGCTGATC+AGG - chr5_2:64180628-64180647 Msa0781620:CDS 50.0%
GGTTCCATCTTGTCAGGGAA+GGG + chr5_2:64180870-64180889 None:intergenic 50.0%
CTTCCCTGACAAGATGGAAC+CGG - chr5_2:64180869-64180888 Msa0781620:intron 50.0%
CATCCGGTTCCATCTTGTCA+GGG + chr5_2:64180875-64180894 None:intergenic 50.0%
TCATCCGGTTCCATCTTGTC+AGG + chr5_2:64180876-64180895 None:intergenic 50.0%
TACTGAGTCTCCATAGGTGG+TGG + chr5_2:64181101-64181120 None:intergenic 50.0%
TTGGAGGACGATGTTGAAGC+CGG - chr5_2:64181242-64181261 Msa0781620:CDS 50.0%
GTCTAAGCTGGCTGATCAGG+AGG - chr5_2:64180631-64180650 Msa0781620:CDS 55.0%
GTCACCCTTCCCTGACAAGA+TGG - chr5_2:64180863-64180882 Msa0781620:CDS 55.0%
CGGTTCCATCTTGTCAGGGA+AGG + chr5_2:64180871-64180890 None:intergenic 55.0%
GGTGAAGGAAGTGGAGCCAT+AGG + chr5_2:64181050-64181069 None:intergenic 55.0%
GTCTAAGCTGGCTGATCAGG+AGG - chr5_2:64180631-64180650 Msa0781620:CDS 55.0%
GTCACCCTTCCCTGACAAGA+TGG - chr5_2:64180863-64180882 Msa0781620:CDS 55.0%
CGGTTCCATCTTGTCAGGGA+AGG + chr5_2:64180871-64180890 None:intergenic 55.0%
GGTGAAGGAAGTGGAGCCAT+AGG + chr5_2:64181050-64181069 None:intergenic 55.0%
GAGGACGATGTTGAAGCCGG+CGG - chr5_2:64181245-64181264 Msa0781620:CDS 60.0%
GAGGACGATGTTGAAGCCGG+CGG - chr5_2:64181245-64181264 Msa0781620:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 64180368 64181304 64180368 ID=Msa0781620;Name=Msa0781620
chr5_2 mRNA 64180368 64181304 64180368 ID=Msa0781620-mRNA-1;Parent=Msa0781620;Name=Msa0781620-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|266
chr5_2 exon 64181020 64181304 64181020 ID=Msa0781620-mRNA-1:exon:19158;Parent=Msa0781620-mRNA-1
chr5_2 exon 64180368 64180883 64180368 ID=Msa0781620-mRNA-1:exon:19157;Parent=Msa0781620-mRNA-1
chr5_2 CDS 64181020 64181304 64181020 ID=Msa0781620-mRNA-1:cds;Parent=Msa0781620-mRNA-1
chr5_2 CDS 64180368 64180883 64180368 ID=Msa0781620-mRNA-1:cds;Parent=Msa0781620-mRNA-1
Gene Sequence

>Msa0781620

ATGATGTCTTCATCATCATCCGCCGATACTAAAAAAGGAAAATGGTCCAAAGAAGAAGATGAAATATTAAAAGCATATGTGGAAAACCATGGAACCAGAAATTGGAACGAGGTATCGAAAAATGCGGGGCTTATACGTTGCGGTAAAAGTTGTCGTCTAAGATGGTATAATCACCTACAACCAGATGTGAAAAAGGGTCCATTTAGTGAAGAAGAAAAAACAAAAGTTTTTGAGTTCTATAAAAAGTATGGTGAATTCAAATGGTCTAAGCTGGCTGATCAGGAGTTACCGGGAAGAAGCGATAATGACATCAAGAACTTTTGGAATGCGAGAAAACGAAAACTTGAAAAGCGTGGCTTGTCACCCTTCCCTGACAAGATGGAACCGGATGATGAGTTGAATAGTAGCCAACAAGTTGAGGATTCACAAGAAGATGAATTTAATATACCACAATTGAAATTTAGAAAATATCCATCAATTTTTGATGAGATAAATGAAAAACTTTTAGATTTCAGGGGTAGCATTATTGGAACTTCTCATATACCTATGGCTCCACTTCCTTCACCTATGATGCTTGGTGACTATCCTCAAATTCCACCACCTATGGAGACTCAGTATCATGGTGACTTTATGGATCCAGATTTTTGGTTTCACAACAGTTCATTAGACACTAACGATGCTGAAGCAAACCTCCTTGATGACTTCATGGATCCATGTCTATGTATTGACTTCAGTAATTTGGAGGACGATGTTGAAGCCGGCGGTCGTTTATTTGACAGTAACTTGCATGACAAGATATAA
Protein sequence

>Msa0781620

MMSSSSSADTKKGKWSKEEDEILKAYVENHGTRNWNEVSKNAGLIRCGKSCRLRWYNHLQPDVKKGPFSEEEKTKVFEFYKKYGEFKWSKLADQELPGRSDNDIKNFWNARKRKLEKRGLSPFPDKMEPDDELNSSQQVEDSQEDEFNIPQLKFRKYPSIFDEINEKLLDFRGSIIGTSHIPMAPLPSPMMLGDYPQIPPPMETQYHGDFMDPDFWFHNSSLDTNDAEANLLDDFMDPCLCIDFSNLEDDVEAGGRLFDSNLHDKI*