Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0781990 | RHN50387.1 | 75.325 | 154 | 29 | 1 | 15 | 159 | 709 | 862 | 1.64e-68 | 236 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0781990 | sp|Q9LE42|HAC5_ARATH | 47.788 | 113 | 56 | 1 | 15 | 124 | 1252 | 1364 | 1.48e-23 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0781990 | A0A396HHL1 | 75.325 | 154 | 29 | 1 | 15 | 159 | 709 | 862 | 7.83e-69 | 236 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0781990 | TR | TAZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0781990 | MtrunA17_Chr6g0456851 | 75.325 | 154 | 29 | 1 | 15 | 159 | 709 | 862 | 1.51e-72 | 236 |
| Msa0781990 | MtrunA17_Chr3g0133461 | 62.727 | 110 | 41 | 0 | 15 | 124 | 920 | 1029 | 1.17e-41 | 151 |
| Msa0781990 | MtrunA17_Chr3g0133461 | 73.438 | 64 | 14 | 1 | 151 | 211 | 1239 | 1302 | 2.38e-23 | 98.2 |
| Msa0781990 | MtrunA17_Chr3g0138411 | 54.545 | 121 | 55 | 0 | 4 | 124 | 780 | 900 | 3.19e-38 | 141 |
| Msa0781990 | MtrunA17_Chr3g0138411 | 74.603 | 63 | 13 | 1 | 152 | 211 | 1103 | 1165 | 1.85e-23 | 98.6 |
| Msa0781990 | MtrunA17_Chr6g0456931 | 83.562 | 73 | 12 | 0 | 15 | 87 | 170 | 242 | 6.77e-38 | 132 |
| Msa0781990 | MtrunA17_Chr6g0456861 | 50.413 | 121 | 55 | 2 | 4 | 124 | 401 | 516 | 5.69e-31 | 120 |
| Msa0781990 | MtrunA17_Chr6g0456861 | 67.647 | 68 | 17 | 2 | 151 | 213 | 673 | 740 | 1.05e-20 | 90.5 |
| Msa0781990 | MtrunA17_Chr5g0438991 | 49.587 | 121 | 56 | 2 | 4 | 124 | 598 | 713 | 1.78e-30 | 119 |
| Msa0781990 | MtrunA17_Chr5g0438991 | 77.778 | 63 | 11 | 1 | 152 | 211 | 871 | 933 | 5.63e-25 | 102 |
| Msa0781990 | MtrunA17_Chr5g0439001 | 48.485 | 99 | 46 | 2 | 26 | 124 | 1 | 94 | 4.56e-24 | 93.2 |
| Msa0781990 | MtrunA17_Chr4g0000031 | 48.673 | 113 | 55 | 1 | 15 | 124 | 1285 | 1397 | 1.01e-23 | 99.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0781990 | AT3G12980.1 | 47.788 | 113 | 56 | 1 | 15 | 124 | 1252 | 1364 | 1.50e-24 | 102 |
| Msa0781990 | AT3G12980.2 | 47.788 | 113 | 56 | 1 | 15 | 124 | 1171 | 1283 | 1.72e-24 | 102 |
| Msa0781990 | AT1G16710.9 | 46.018 | 113 | 58 | 1 | 15 | 124 | 1255 | 1367 | 3.08e-24 | 101 |
| Msa0781990 | AT1G16710.1 | 46.018 | 113 | 58 | 1 | 15 | 124 | 1281 | 1393 | 3.29e-24 | 101 |
| Msa0781990 | AT1G16710.6 | 46.018 | 113 | 58 | 1 | 15 | 124 | 1216 | 1328 | 3.64e-24 | 101 |
| Msa0781990 | AT1G16710.4 | 46.018 | 113 | 58 | 1 | 15 | 124 | 1216 | 1328 | 3.64e-24 | 101 |
| Msa0781990 | AT1G16710.5 | 46.018 | 113 | 58 | 1 | 15 | 124 | 1216 | 1328 | 3.64e-24 | 101 |
| Msa0781990 | AT1G16710.2 | 46.018 | 113 | 58 | 1 | 15 | 124 | 1252 | 1364 | 3.79e-24 | 100 |
| Msa0781990 | AT1G16710.3 | 46.018 | 113 | 58 | 1 | 15 | 124 | 1255 | 1367 | 3.83e-24 | 100 |
| Msa0781990 | AT1G16710.10 | 46.018 | 113 | 58 | 1 | 15 | 124 | 1255 | 1367 | 3.83e-24 | 100 |
| Msa0781990 | AT1G16710.8 | 46.018 | 113 | 58 | 1 | 15 | 124 | 1255 | 1367 | 3.83e-24 | 100 |
| Msa0781990 | AT1G16710.7 | 46.018 | 113 | 58 | 1 | 15 | 124 | 1255 | 1367 | 3.83e-24 | 100 |
| Msa0781990 | AT1G79000.2 | 44.248 | 113 | 60 | 1 | 15 | 124 | 1272 | 1384 | 1.66e-23 | 99.4 |
| Msa0781990 | AT1G79000.3 | 44.248 | 113 | 60 | 1 | 15 | 124 | 1248 | 1360 | 1.96e-23 | 99.0 |
| Msa0781990 | AT1G79000.1 | 44.248 | 113 | 60 | 1 | 15 | 124 | 1272 | 1384 | 1.98e-23 | 99.0 |
| Msa0781990 | AT1G55970.1 | 45.614 | 114 | 58 | 1 | 15 | 124 | 1047 | 1160 | 8.47e-23 | 97.1 |
| Msa0781990 | AT1G55970.2 | 45.614 | 114 | 58 | 1 | 15 | 124 | 1033 | 1146 | 8.96e-23 | 97.1 |
| Msa0781990 | AT1G67220.1 | 39.024 | 123 | 60 | 5 | 8 | 124 | 966 | 1079 | 1.53e-15 | 75.9 |
Find 36 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGAAATTTAGATCTTTAA+AGG | 0.127431 | 5_2:-64679853 | Msa0781990:CDS |
| CCTTGTGGTCTTCTGAGTTT+TGG | 0.138277 | 5_2:+64680218 | None:intergenic |
| TTCGATAACCAGAATGTCTT+TGG | 0.282466 | 5_2:+64679797 | None:intergenic |
| AAAGAGTGTCGAGGAGAATA+TGG | 0.290905 | 5_2:-64679894 | Msa0781990:CDS |
| AGGAAAAGCCAAAGACATTC+TGG | 0.339525 | 5_2:-64679805 | Msa0781990:CDS |
| TTCTTGATTTGAGAATAGTA+TGG | 0.382229 | 5_2:+64677641 | None:intergenic |
| CTGCTGGTCTGCTGCTGCTA+TGG | 0.383607 | 5_2:-64679937 | Msa0781990:CDS |
| ATCATACTGTTTAGTGTTGA+AGG | 0.389369 | 5_2:+64678106 | None:intergenic |
| GCTCGTCTGCCGTACTTTGA+TGG | 0.394305 | 5_2:-64679963 | Msa0781990:CDS |
| AAAGCAAAATTCAAGTGAAT+CGG | 0.404509 | 5_2:-64677598 | Msa0781990:CDS |
| ATTTAGATCTTTAAAGGCCA+TGG | 0.423922 | 5_2:-64679847 | Msa0781990:CDS |
| AAGCAAAATTCAAGTGAATC+GGG | 0.431908 | 5_2:-64677597 | Msa0781990:CDS |
| ACTAAAGAAAATGTAGTTGT+TGG | 0.437632 | 5_2:-64680050 | Msa0781990:CDS |
| ATCTCAATGCCGCGCAACTA+AGG | 0.439497 | 5_2:-64677681 | Msa0781990:CDS |
| AGACATTCTGGTTATCGAAA+AGG | 0.479902 | 5_2:-64679793 | Msa0781990:intron |
| TTAGTATCTTTCTACAGTGC+TGG | 0.481282 | 5_2:+64677570 | None:intergenic |
| TTTAGATCTTTAAAGGCCAT+GGG | 0.526461 | 5_2:-64679846 | Msa0781990:CDS |
| TTTCAAATAATGCATTCTCA+AGG | 0.532999 | 5_2:+64678078 | None:intergenic |
| AGATACTAACTGCTCACTCT+AGG | 0.533980 | 5_2:-64677556 | Msa0781990:CDS |
| CAGACGAGCAGTGGTTACCT+TGG | 0.555091 | 5_2:+64679977 | None:intergenic |
| ACCACAAGGATGATAAGCTA+CGG | 0.568877 | 5_2:-64680204 | Msa0781990:CDS |
| CGTACTTTGATGGAGACTGC+TGG | 0.578417 | 5_2:-64679953 | Msa0781990:CDS |
| CAGCAGTCTCCATCAAAGTA+CGG | 0.583174 | 5_2:+64679954 | None:intergenic |
| AAACAAATGATCATACATGT+TGG | 0.584306 | 5_2:+64680022 | None:intergenic |
| AAAGTACGGCAGACGAGCAG+TGG | 0.584630 | 5_2:+64679968 | None:intergenic |
| GGGAGGATTGACATATCCCA+TGG | 0.590100 | 5_2:+64679830 | None:intergenic |
| ACGGTTCAGCCTTAGTTGCG+CGG | 0.593805 | 5_2:+64677672 | None:intergenic |
| TATTGAAACACAGTGCTCCA+AGG | 0.599476 | 5_2:-64679994 | Msa0781990:CDS |
| CCACAAGGATGATAAGCTAC+GGG | 0.605576 | 5_2:-64680203 | Msa0781990:CDS |
| GAATAGTATGGATGAGAGCA+CGG | 0.621666 | 5_2:+64677653 | None:intergenic |
| GGATATGTCAATCCTCCCAA+AGG | 0.625231 | 5_2:-64679825 | Msa0781990:CDS |
| CCAAAACTCAGAAGACCACA+AGG | 0.626907 | 5_2:-64680218 | Msa0781990:CDS |
| AGGATGATAAGCTACGGGAG+TGG | 0.642064 | 5_2:-64680198 | Msa0781990:intron |
| AGCAAAATTCAAGTGAATCG+GGG | 0.645586 | 5_2:-64677596 | Msa0781990:CDS |
| GTATATATCAATGCTTACAA+AGG | 0.651727 | 5_2:-64680075 | Msa0781990:CDS |
| CCCGTAGCTTATCATCCTTG+TGG | 0.668536 | 5_2:+64680203 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGAAATTTTTAAGAAAAA+TGG | + | chr5_2:64678657-64678676 | None:intergenic | 10.0% |
| !!! | ATGTAGTTTTGATTATAATT+TGG | - | chr5_2:64678249-64678268 | Msa0781990:intron | 15.0% |
| !!! | AAACTTTTATTATGATAACA+AGG | + | chr5_2:64678389-64678408 | None:intergenic | 15.0% |
| !! | TATAAAATCATATATCTCAT+TGG | + | chr5_2:64678737-64678756 | None:intergenic | 15.0% |
| !!! | TATTTTCTTCCTTTAAAAAA+TGG | - | chr5_2:64679321-64679340 | Msa0781990:intron | 15.0% |
| !! | TATTATTCTTTAGATGATAA+AGG | + | chr5_2:64679749-64679768 | None:intergenic | 15.0% |
| !! | ACAAGAATATAAATACTCAA+TGG | + | chr5_2:64677613-64677632 | None:intergenic | 20.0% |
| !! | ACTGAAATTTAGATCTTTAA+AGG | - | chr5_2:64677863-64677882 | Msa0781990:intron | 20.0% |
| !! | TGAATTGGTTATTAGTAAAT+TGG | - | chr5_2:64677991-64678010 | Msa0781990:intron | 20.0% |
| !!! | TTTTAAAAATCACGCATTTT+GGG | + | chr5_2:64678126-64678145 | None:intergenic | 20.0% |
| !!! | TTTTTAAAAATCACGCATTT+TGG | + | chr5_2:64678127-64678146 | None:intergenic | 20.0% |
| !! | AAATGAATATTGAACTTGAT+TGG | - | chr5_2:64678144-64678163 | Msa0781990:intron | 20.0% |
| !! | GATTATAATTTGGCTATTAA+TGG | - | chr5_2:64678259-64678278 | Msa0781990:intron | 20.0% |
| !!! | TTACTATTTTGGATAAACTA+AGG | + | chr5_2:64678339-64678358 | None:intergenic | 20.0% |
| !! | TTTATTATGATAACAAGGAA+AGG | + | chr5_2:64678384-64678403 | None:intergenic | 20.0% |
| !!! | AGTTTGGAATTAAAAACTAA+GGG | + | chr5_2:64678700-64678719 | None:intergenic | 20.0% |
| !!! | ATATTGGTTGAAAAAAGAAA+AGG | + | chr5_2:64678843-64678862 | None:intergenic | 20.0% |
| !! | GATGATCATTTCAAATTTAT+AGG | + | chr5_2:64679207-64679226 | None:intergenic | 20.0% |
| !!! | TGTTGATTTTCTTAATGATT+TGG | - | chr5_2:64679295-64679314 | Msa0781990:intron | 20.0% |
| !!! | AAAGATTATACTAATTTGCA+TGG | + | chr5_2:64679551-64679570 | None:intergenic | 20.0% |
| !! | ATTTATATTCTTGTTTGTGC+AGG | - | chr5_2:64677619-64677638 | Msa0781990:CDS | 25.0% |
| ! | GTATATATCAATGCTTACAA+AGG | - | chr5_2:64677641-64677660 | Msa0781990:CDS | 25.0% |
| !! | AACAACTACATTTTCTTTAG+TGG | + | chr5_2:64677667-64677686 | None:intergenic | 25.0% |
| ! | ACTAAAGAAAATGTAGTTGT+TGG | - | chr5_2:64677666-64677685 | Msa0781990:CDS | 25.0% |
| ! | AAACAAATGATCATACATGT+TGG | + | chr5_2:64677697-64677716 | None:intergenic | 25.0% |
| ! | CTACATCTAATAACAAGATT+TGG | + | chr5_2:64678235-64678254 | None:intergenic | 25.0% |
| !!! | TTGATAATGGGAATAATAAC+TGG | + | chr5_2:64678310-64678329 | None:intergenic | 25.0% |
| !!! | CTAAGGTATAAGTTGATAAT+GGG | + | chr5_2:64678322-64678341 | None:intergenic | 25.0% |
| !!! | ACTAAGGTATAAGTTGATAA+TGG | + | chr5_2:64678323-64678342 | None:intergenic | 25.0% |
| !! | AACATAGTGGTTTACTATTT+TGG | + | chr5_2:64678350-64678369 | None:intergenic | 25.0% |
| !! | TAGTAAACCACTATGTTTTA+TGG | - | chr5_2:64678353-64678372 | Msa0781990:intron | 25.0% |
| ! | TAATAGAATAACGATCGAAT+GGG | + | chr5_2:64678467-64678486 | None:intergenic | 25.0% |
| !! | AAACTAAGGGTATATTTGAA+AGG | + | chr5_2:64678687-64678706 | None:intergenic | 25.0% |
| !! | CAGTTTGGAATTAAAAACTA+AGG | + | chr5_2:64678701-64678720 | None:intergenic | 25.0% |
| !!! | CTCTTGATATTTTTTGCATT+TGG | + | chr5_2:64678982-64679001 | None:intergenic | 25.0% |
| !! | AAAAATATCAAGAGTGTGAA+AGG | - | chr5_2:64678988-64679007 | Msa0781990:intron | 25.0% |
| ! | ATATGTGTAACCAAATTTCA+CGG | + | chr5_2:64679082-64679101 | None:intergenic | 25.0% |
| ! | TTCTTTGTTCATGTAAAATG+TGG | - | chr5_2:64679178-64679197 | Msa0781990:intron | 25.0% |
| ! | ACACACTTATATCTCATATT+TGG | + | chr5_2:64679278-64679297 | None:intergenic | 25.0% |
| !!! | GCATTTTGTCCATTTTTTAA+AGG | + | chr5_2:64679333-64679352 | None:intergenic | 25.0% |
| ! | CTAACGATTCAGAATAAAAA+AGG | - | chr5_2:64679374-64679393 | Msa0781990:intron | 25.0% |
| ! | ACACACTTCAATTAAAAATG+AGG | - | chr5_2:64679454-64679473 | Msa0781990:intron | 25.0% |
| ! | AATCATATGAACTTAACTTC+AGG | + | chr5_2:64679510-64679529 | None:intergenic | 25.0% |
| ! | TTTCAAATAATGCATTCTCA+AGG | + | chr5_2:64679641-64679660 | None:intergenic | 25.0% |
| !! | TTCTTGATTTGAGAATAGTA+TGG | + | chr5_2:64680078-64680097 | None:intergenic | 25.0% |
| ! | AAAGCAAAATTCAAGTGAAT+CGG | - | chr5_2:64680118-64680137 | Msa0781990:intron | 25.0% |
| !!! | TCACATCAGTCTTTTTTTTT+TGG | - | chr5_2:64680218-64680237 | Msa0781990:CDS | 25.0% |
| ! | ATTTAGATCTTTAAAGGCCA+TGG | - | chr5_2:64677869-64677888 | Msa0781990:intron | 30.0% |
| ! | TTTAGATCTTTAAAGGCCAT+GGG | - | chr5_2:64677870-64677889 | Msa0781990:intron | 30.0% |
| GTTGTCATGAAAGTTTGAAT+TGG | - | chr5_2:64677976-64677995 | Msa0781990:intron | 30.0% | |
| TAATGGGAATAATAACTGGA+TGG | + | chr5_2:64678306-64678325 | None:intergenic | 30.0% | |
| GTTTACTATTCCTTACTCAT+TGG | - | chr5_2:64678405-64678424 | Msa0781990:intron | 30.0% | |
| GAATAACTTTCCAATGAGTA+AGG | + | chr5_2:64678418-64678437 | None:intergenic | 30.0% | |
| GTAATAGAATAACGATCGAA+TGG | + | chr5_2:64678468-64678487 | None:intergenic | 30.0% | |
| !! | TGTTTCTGAAGTCAATGAAA+AGG | - | chr5_2:64678591-64678610 | Msa0781990:intron | 30.0% |
| !! | GTTTCTGAAGTCAATGAAAA+GGG | - | chr5_2:64678592-64678611 | Msa0781990:intron | 30.0% |
| GGATAAATAGCATATCAGTT+TGG | + | chr5_2:64678716-64678735 | None:intergenic | 30.0% | |
| GGAAGAAAAATCAGATTACA+TGG | + | chr5_2:64678822-64678841 | None:intergenic | 30.0% | |
| TCAACCAATATCTATTAGCT+TGG | - | chr5_2:64678852-64678871 | Msa0781990:intron | 30.0% | |
| GCTTCATAGGCAATATAATT+TGG | + | chr5_2:64678878-64678897 | None:intergenic | 30.0% | |
| ! | ACAATGAAGTTTTGCTTCAT+AGG | + | chr5_2:64678891-64678910 | None:intergenic | 30.0% |
| !!! | TTGAATTTTATGCCGTTTTC+AGG | - | chr5_2:64679569-64679588 | Msa0781990:intron | 30.0% |
| ! | ATCATACTGTTTAGTGTTGA+AGG | + | chr5_2:64679613-64679632 | None:intergenic | 30.0% |
| CAAACTGAAAATGATTCTTC+TGG | + | chr5_2:64679689-64679708 | None:intergenic | 30.0% | |
| ATGATAAAGGATCATCATTG+AGG | + | chr5_2:64679736-64679755 | None:intergenic | 30.0% | |
| ! | TCACATACTTTTCAAACTGT+CGG | + | chr5_2:64679777-64679796 | None:intergenic | 30.0% |
| AGACGAGTTAAATAAGAAAC+CGG | - | chr5_2:64679857-64679876 | Msa0781990:CDS | 30.0% | |
| AAGCAAAATTCAAGTGAATC+GGG | - | chr5_2:64680119-64680138 | Msa0781990:intron | 30.0% | |
| !! | ATCATTGAAAAAGAGTGTCG+AGG | - | chr5_2:64677813-64677832 | Msa0781990:intron | 35.0% |
| !!! | ATGTCTTTGGCTTTTCCTTT+GGG | + | chr5_2:64677909-64677928 | None:intergenic | 35.0% |
| !!! | AATGTCTTTGGCTTTTCCTT+TGG | + | chr5_2:64677910-64677929 | None:intergenic | 35.0% |
| TTCGATAACCAGAATGTCTT+TGG | + | chr5_2:64677922-64677941 | None:intergenic | 35.0% | |
| ! | AGACATTCTGGTTATCGAAA+AGG | - | chr5_2:64677923-64677942 | Msa0781990:intron | 35.0% |
| ! | ATTACATGCATTTGGGACAT+TGG | + | chr5_2:64678197-64678216 | None:intergenic | 35.0% |
| CAGTTGGATTACATGCATTT+GGG | + | chr5_2:64678204-64678223 | None:intergenic | 35.0% | |
| GGTGAAACCATAAAACATAG+TGG | + | chr5_2:64678363-64678382 | None:intergenic | 35.0% | |
| TATAGCACGAGTTTGAGAAA+AGG | - | chr5_2:64678523-64678542 | Msa0781990:intron | 35.0% | |
| TTGGCCAAGCTAATAGATAT+TGG | + | chr5_2:64678859-64678878 | None:intergenic | 35.0% | |
| TTTCCTCTTACCGTGAAATT+TGG | - | chr5_2:64679069-64679088 | Msa0781990:intron | 35.0% | |
| TAACCAAATTTCACGGTAAG+AGG | + | chr5_2:64679075-64679094 | None:intergenic | 35.0% | |
| TCTTCTATTAGGGTTATGCT+AGG | - | chr5_2:64679235-64679254 | Msa0781990:intron | 35.0% | |
| GATCATCATTGAGGAATACT+TGG | + | chr5_2:64679727-64679746 | None:intergenic | 35.0% | |
| GCATCTCTCTCTTTATATTC+TGG | + | chr5_2:64679810-64679829 | None:intergenic | 35.0% | |
| !!! | CTCGATTCAACTTGTTTTGA+TGG | + | chr5_2:64679839-64679858 | None:intergenic | 35.0% |
| AGCAAAATTCAAGTGAATCG+GGG | - | chr5_2:64680120-64680139 | Msa0781990:intron | 35.0% | |
| TTAGTATCTTTCTACAGTGC+TGG | + | chr5_2:64680149-64680168 | None:intergenic | 35.0% | |
| ! | CTTGTGGTCTTCTGAGTTTT+GGG | + | chr5_2:64677500-64677519 | None:intergenic | 40.0% |
| ACCACAAGGATGATAAGCTA+CGG | - | chr5_2:64677512-64677531 | Msa0781990:CDS | 40.0% | |
| TATTGAAACACAGTGCTCCA+AGG | - | chr5_2:64677722-64677741 | Msa0781990:intron | 40.0% | |
| !! | AAAGAGTGTCGAGGAGAATA+TGG | - | chr5_2:64677822-64677841 | Msa0781990:intron | 40.0% |
| AGGAAAAGCCAAAGACATTC+TGG | - | chr5_2:64677911-64677930 | Msa0781990:intron | 40.0% | |
| CCATTCGATGAAAGATTGGA+CGG | + | chr5_2:64678171-64678190 | None:intergenic | 40.0% | |
| GCAGTTGGATTACATGCATT+TGG | + | chr5_2:64678205-64678224 | None:intergenic | 40.0% | |
| !! | AGATTTGGCTCTAATGCAGT+TGG | + | chr5_2:64678220-64678239 | None:intergenic | 40.0% |
| CACGAGTTTGAGAAAAGGAT+GGG | - | chr5_2:64678528-64678547 | Msa0781990:intron | 40.0% | |
| TGCTGTAAACCAATTGTGTC+TGG | - | chr5_2:64678939-64678958 | Msa0781990:intron | 40.0% | |
| GCTGTAAACCAATTGTGTCT+GGG | - | chr5_2:64678940-64678959 | Msa0781990:intron | 40.0% | |
| ATCCCTTCGCTTCTTCTATT+AGG | - | chr5_2:64679224-64679243 | Msa0781990:intron | 40.0% | |
| TCCCTTCGCTTCTTCTATTA+GGG | - | chr5_2:64679225-64679244 | Msa0781990:intron | 40.0% | |
| ACCCTAATAGAAGAAGCGAA+GGG | + | chr5_2:64679229-64679248 | None:intergenic | 40.0% | |
| AACCCTAATAGAAGAAGCGA+AGG | + | chr5_2:64679230-64679249 | None:intergenic | 40.0% | |
| TAGACTGTTACCTCACTAAG+TGG | + | chr5_2:64679485-64679504 | None:intergenic | 40.0% | |
| CATCCACAAAGACCTGAAAA+CGG | + | chr5_2:64679584-64679603 | None:intergenic | 40.0% | |
| GTTAAATAAGAAACCGGTGC+TGG | - | chr5_2:64679863-64679882 | Msa0781990:CDS | 40.0% | |
| AACTATGTACTTACCAGCAC+CGG | + | chr5_2:64679879-64679898 | None:intergenic | 40.0% | |
| GTGTAAGTCAGCAAGTAAGA+GGG | + | chr5_2:64679980-64679999 | None:intergenic | 40.0% | |
| TGTGTAAGTCAGCAAGTAAG+AGG | + | chr5_2:64679981-64680000 | None:intergenic | 40.0% | |
| GAATAGTATGGATGAGAGCA+CGG | + | chr5_2:64680066-64680085 | None:intergenic | 40.0% | |
| AGATACTAACTGCTCACTCT+AGG | - | chr5_2:64680160-64680179 | Msa0781990:intron | 40.0% | |
| ! | CCTTGTGGTCTTCTGAGTTT+TGG | + | chr5_2:64677501-64677520 | None:intergenic | 45.0% |
| CCAAAACTCAGAAGACCACA+AGG | - | chr5_2:64677498-64677517 | Msa0781990:CDS | 45.0% | |
| CCACAAGGATGATAAGCTAC+GGG | - | chr5_2:64677513-64677532 | Msa0781990:CDS | 45.0% | |
| AAGGAGGTGAAAAGAGAGAG+GGG | + | chr5_2:64677548-64677567 | None:intergenic | 45.0% | |
| CAAGGAGGTGAAAAGAGAGA+GGG | + | chr5_2:64677549-64677568 | None:intergenic | 45.0% | |
| ACAAGGAGGTGAAAAGAGAG+AGG | + | chr5_2:64677550-64677569 | None:intergenic | 45.0% | |
| CAGCAGTCTCCATCAAAGTA+CGG | + | chr5_2:64677765-64677784 | None:intergenic | 45.0% | |
| GGATATGTCAATCCTCCCAA+AGG | - | chr5_2:64677891-64677910 | Msa0781990:intron | 45.0% | |
| !!! | TCTTTGGCTTTTCCTTTGGG+AGG | + | chr5_2:64677906-64677925 | None:intergenic | 45.0% |
| !! | ATGTCCCGAAAGCGTTAATG+CGG | + | chr5_2:64678025-64678044 | None:intergenic | 45.0% |
| AGTGACTGTCTGAACTCGAT+TGG | - | chr5_2:64678046-64678065 | Msa0781990:intron | 45.0% | |
| ACTGTCTGAACTCGATTGGA+CGG | - | chr5_2:64678050-64678069 | Msa0781990:intron | 45.0% | |
| CCGTCCAATCTTTCATCGAA+TGG | - | chr5_2:64678168-64678187 | Msa0781990:intron | 45.0% | |
| GTGGCCATTCGATGAAAGAT+TGG | + | chr5_2:64678175-64678194 | None:intergenic | 45.0% | |
| ! | ACATGCATTTGGGACATTGG+TGG | + | chr5_2:64678194-64678213 | None:intergenic | 45.0% |
| GCACGAGTTTGAGAAAAGGA+TGG | - | chr5_2:64678527-64678546 | Msa0781990:intron | 45.0% | |
| AATTGAAGTGTGTGCGTCAG+CGG | + | chr5_2:64679447-64679466 | None:intergenic | 45.0% | |
| TGAGGTTCATCCACTTAGTG+AGG | - | chr5_2:64679472-64679491 | Msa0781990:intron | 45.0% | |
| !!! | ATGCCGTTTTCAGGTCTTTG+TGG | - | chr5_2:64679578-64679597 | Msa0781990:intron | 45.0% |
| TCATTGAGGAATACTTGGCG+TGG | + | chr5_2:64679722-64679741 | None:intergenic | 45.0% | |
| !! | CTTGCTGACTTACACACAGA+TGG | - | chr5_2:64679985-64680004 | Msa0781990:CDS | 45.0% |
| !!! | TTTTAAAGTTAATTTTTTTT+TGG | + | chr5_2:64678077-64678096 | None:intergenic | 5.0% |
| !!! | ATTTTAAAATTTCTTTAATT+TGG | + | chr5_2:64678572-64678591 | None:intergenic | 5.0% |
| CCCGTAGCTTATCATCCTTG+TGG | + | chr5_2:64677516-64677535 | None:intergenic | 50.0% | |
| AGGATGATAAGCTACGGGAG+TGG | - | chr5_2:64677518-64677537 | Msa0781990:CDS | 50.0% | |
| ACACATGCGCATACACAAGG+AGG | + | chr5_2:64677564-64677583 | None:intergenic | 50.0% | |
| CACACACATGCGCATACACA+AGG | + | chr5_2:64677567-64677586 | None:intergenic | 50.0% | |
| CGTACTTTGATGGAGACTGC+TGG | - | chr5_2:64677763-64677782 | Msa0781990:intron | 50.0% | |
| GGGAGGATTGACATATCCCA+TGG | + | chr5_2:64677889-64677908 | None:intergenic | 50.0% | |
| CATCGCTTCCCAGACACAAT+TGG | + | chr5_2:64678951-64678970 | None:intergenic | 50.0% | |
| CAATTGTGTCTGGGAAGCGA+TGG | - | chr5_2:64678949-64678968 | Msa0781990:intron | 50.0% | |
| ATCTCAATGCCGCGCAACTA+AGG | - | chr5_2:64680035-64680054 | Msa0781990:CDS | 50.0% | |
| CAGACGAGCAGTGGTTACCT+TGG | + | chr5_2:64677742-64677761 | None:intergenic | 55.0% | |
| AAAGTACGGCAGACGAGCAG+TGG | + | chr5_2:64677751-64677770 | None:intergenic | 55.0% | |
| GCTCGTCTGCCGTACTTTGA+TGG | - | chr5_2:64677753-64677772 | Msa0781990:intron | 55.0% | |
| !! | CCGAAAGCGTTAATGCGGCA+CGG | + | chr5_2:64678020-64678039 | None:intergenic | 55.0% |
| CCGTGCCGCATTAACGCTTT+CGG | - | chr5_2:64678017-64678036 | Msa0781990:intron | 55.0% | |
| CGTGCCGCATTAACGCTTTC+GGG | - | chr5_2:64678018-64678037 | Msa0781990:intron | 55.0% | |
| GAGGAATACTTGGCGTGGCA+GGG | + | chr5_2:64679717-64679736 | None:intergenic | 55.0% | |
| TGAGGAATACTTGGCGTGGC+AGG | + | chr5_2:64679718-64679737 | None:intergenic | 55.0% | |
| ACGGTTCAGCCTTAGTTGCG+CGG | + | chr5_2:64680047-64680066 | None:intergenic | 55.0% | |
| ! | CTGCTGGTCTGCTGCTGCTA+TGG | - | chr5_2:64677779-64677798 | Msa0781990:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 64677475 | 64680263 | 64677475 | ID=Msa0781990;Name=Msa0781990 |
| chr5_2 | mRNA | 64677475 | 64680263 | 64677475 | ID=Msa0781990-mRNA-1;Parent=Msa0781990;Name=Msa0781990-mRNA-1;_AED=0.52;_eAED=0.56;_QI=0|0|0|1|0.33|0.5|4|0|234 |
| chr5_2 | exon | 64680199 | 64680263 | 64680199 | ID=Msa0781990-mRNA-1:exon:19394;Parent=Msa0781990-mRNA-1 |
| chr5_2 | exon | 64679794 | 64680097 | 64679794 | ID=Msa0781990-mRNA-1:exon:19393;Parent=Msa0781990-mRNA-1 |
| chr5_2 | exon | 64678072 | 64678147 | 64678072 | ID=Msa0781990-mRNA-1:exon:19392;Parent=Msa0781990-mRNA-1 |
| chr5_2 | exon | 64677475 | 64677734 | 64677475 | ID=Msa0781990-mRNA-1:exon:19391;Parent=Msa0781990-mRNA-1 |
| chr5_2 | CDS | 64680199 | 64680263 | 64680199 | ID=Msa0781990-mRNA-1:cds;Parent=Msa0781990-mRNA-1 |
| chr5_2 | CDS | 64679794 | 64680097 | 64679794 | ID=Msa0781990-mRNA-1:cds;Parent=Msa0781990-mRNA-1 |
| chr5_2 | CDS | 64678072 | 64678147 | 64678072 | ID=Msa0781990-mRNA-1:cds;Parent=Msa0781990-mRNA-1 |
| chr5_2 | CDS | 64677475 | 64677734 | 64677475 | ID=Msa0781990-mRNA-1:cds;Parent=Msa0781990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
