AlfalfaGEDB | Msa0782160

M. sativa cultivar zhongmu-4 / Msa0782160

KEGG: K11644
GO: GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: PF02671.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0782160	sp\|O04539\|SNL4_ARATH	57.143	77	32	1	108	184	108	183	8.75e-18	84.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0782160	G7K6W4	88.608	79	9	0	109	187	137	215	6.74e-37	147

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TFs/TRs:

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Gene ID	Type	Classification
Msa0782160	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0782160	MtrunA17_Chr5g0415031	88.608	79	9	0	109	187	137	215	1.30e-40	147
Msa0782160	MtrunA17_Chr8g0364231	58.025	81	33	1	108	187	135	215	3.18e-20	88.2
Msa0782160	MtrunA17_Chr6g0452001	60.526	76	28	2	108	181	156	231	5.44e-20	87.4
Msa0782160	MtrunA17_Chr6g0452021	55.385	65	29	0	108	172	134	198	9.89e-16	74.7
Msa0782160	MtrunA17_Chr1g0156171	68.519	54	3	1	134	187	64	103	1.47e-15	70.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0782160	AT1G70060.2	57.143	77	32	1	108	184	108	183	8.89e-19	84.3
Msa0782160	AT1G70060.1	57.143	77	32	1	108	184	108	183	8.89e-19	84.3
Msa0782160	AT1G24190.1	61.905	63	24	0	108	170	107	169	5.31e-18	82.0
Msa0782160	AT1G24190.3	61.905	63	24	0	108	170	107	169	5.53e-18	82.0
Msa0782160	AT1G24190.2	61.905	63	24	0	108	170	107	169	5.63e-18	82.0
Msa0782160	AT1G59890.4	40.909	110	52	2	108	204	136	245	9.26e-18	81.6
Msa0782160	AT1G59890.3	40.909	110	52	2	108	204	136	245	9.27e-18	81.6
Msa0782160	AT1G59890.1	40.909	110	52	2	108	204	136	245	9.54e-18	81.3
Msa0782160	AT1G59890.2	40.909	110	52	2	108	204	136	245	9.73e-18	81.3
Msa0782160	AT1G24200.1	45.455	88	44	1	108	191	104	191	2.65e-15	71.6

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Find 92 sgRNAs with CRISPR-Local

Find 600 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATTGCCTCTAAGATG+CGG	0.617095	5_2:-64945159	Msa0782160:CDS
AAAAGTTATCCTCTCCGCTG+TGG	0.665072	5_2:+64933134	None:intergenic
AAGATGCTCAATTCTAACAA+TGG	0.593467	5_2:+64934021	None:intergenic
ACACCTTCACATAGTTTGGA+TGG	0.584468	5_2:+64933583	None:intergenic
ACACCTTCACATAGTTTGGA+TGG	0.584468	5_2:+64933635	None:intergenic
ACATACCTCTTTGTAGACCA+GGG	0.680303	5_2:+64934630	None:intergenic
ACCACCCGGATCTTCTTGAA+TGG	0.456644	5_2:-64934477	Msa0782160:CDS
ACCATTCAAGAAGATCCGGG+TGG	0.747614	5_2:+64934476	None:intergenic
AGATAAAACAAATATAGATT+AGG	0.403080	5_2:-64933985	Msa0782160:three_prime_UTR
AGCATGAGTAGATGCAGCTG+TGG	0.685753	5_2:+64934429	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTAAAGATCTCAGCTAATA+AGG	+	chr5_2:64934013-64934032	None:intergenic	30.0%
AGATCTTTACAGAGAATCAA+TGG	-	chr5_2:64934022-64934041	Msa0782160:three_prime_UTR	30.0%
ACCATTTGTATTAGTTGGAT+TGG	-	chr5_2:64934184-64934203	Msa0782160:three_prime_UTR	30.0%
TCCAATCCAACTAATACAAA+TGG	+	chr5_2:64934188-64934207	None:intergenic	30.0%
TTTCATATGAATGTAGGAGT+TGG	+	chr5_2:64934415-64934434	None:intergenic	30.0%
ACAAGAAAGGTTGAAGTAAT+TGG	-	chr5_2:64934529-64934548	Msa0782160:intron	30.0%
GAGTGAAAAACTCATACTTA+AGG	-	chr5_2:64934718-64934737	Msa0782160:intron	30.0%
AATAATGTGGATCAACTCAT+CGG	+	chr5_2:64934799-64934818	None:intergenic	30.0%
GAATGAATCAGATATAACAG+AGG	+	chr5_2:64935212-64935231	None:intergenic	30.0%
CCTGCACTTTGTAAAAATAT+TGG	-	chr5_2:64936309-64936328	Msa0782160:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	64933148	64945806	64933148	ID=Msa0782160;Name=Msa0782160
chr5_2	mRNA	64933148	64945806	64933148	ID=Msa0782160-mRNA-1;Parent=Msa0782160;Name=Msa0782160-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0\|0.33\|0.28\|0.42\|0.83\|0.71\|7\|1130\|205
chr5_2	exon	64933148	64933387	64933148	ID=Msa0782160-mRNA-1:exon:19493;Parent=Msa0782160-mRNA-1
chr5_2	exon	64933440	64934518	64933440	ID=Msa0782160-mRNA-1:exon:19492;Parent=Msa0782160-mRNA-1
chr5_2	exon	64934636	64934734	64934636	ID=Msa0782160-mRNA-1:exon:19491;Parent=Msa0782160-mRNA-1
chr5_2	exon	64944657	64944699	64944657	ID=Msa0782160-mRNA-1:exon:19490;Parent=Msa0782160-mRNA-1
chr5_2	exon	64945061	64945215	64945061	ID=Msa0782160-mRNA-1:exon:19489;Parent=Msa0782160-mRNA-1
chr5_2	exon	64945300	64945348	64945300	ID=Msa0782160-mRNA-1:exon:19488;Parent=Msa0782160-mRNA-1
chr5_2	exon	64945724	64945806	64945724	ID=Msa0782160-mRNA-1:exon:19487;Parent=Msa0782160-mRNA-1
chr5_2	CDS	64945724	64945806	64945724	ID=Msa0782160-mRNA-1:cds;Parent=Msa0782160-mRNA-1
chr5_2	CDS	64945300	64945348	64945300	ID=Msa0782160-mRNA-1:cds;Parent=Msa0782160-mRNA-1
chr5_2	CDS	64945061	64945215	64945061	ID=Msa0782160-mRNA-1:cds;Parent=Msa0782160-mRNA-1
chr5_2	CDS	64944657	64944699	64944657	ID=Msa0782160-mRNA-1:cds;Parent=Msa0782160-mRNA-1
chr5_2	CDS	64934636	64934734	64934636	ID=Msa0782160-mRNA-1:cds;Parent=Msa0782160-mRNA-1
chr5_2	CDS	64934330	64934518	64934330	ID=Msa0782160-mRNA-1:cds;Parent=Msa0782160-mRNA-1
chr5_2	three_prime_UTR	64933440	64934329	64933440	ID=Msa0782160-mRNA-1:three_prime_utr;Parent=Msa0782160-mRNA-1
chr5_2	three_prime_UTR	64933148	64933387	64933148	ID=Msa0782160-mRNA-1:three_prime_utr;Parent=Msa0782160-mRNA-1

Gene Sequence

>Msa0782160

ATGAATTTATATGATATCAAATTTGATTGCTTTATGGTGTTGTTTAAGTGCAGTGAAAGTGAGTATGAGAGAGATATTCCATGTGAAGATGCTGCAAAGGATGCTTTGTTGTACAGTTATAAGTCTGTGCAGTTTCATGATGCAGGAATAACCACAACTGCAACTAAAAACATTGCCTCTAAGATGCGGTTTAACCGTTGGAACCACTTTAACGCAACCAACATCGATGCTGATGATTTCCATCTTTCCGGCACCATAACTGAATCAATCATGGATTCCAACTCAAGCAGCGGCAAGGTTGGTGTGTTGCTGGAGACGGTGCAAATGAAGACTCGGTTTCAGGGCGATGTTCATGTTTACAAGTCATTTCTGGACATATTGAATACATACAGAAAGGAAAGTAAGTCTAACACCCTGGTCTACAAAGAGGTTGCTGCACTCTACCAAAACCACCCGGATCTTCTTGAATGGTTTATTCATTTTCATCCAGAAGCCACCACAGCTGCATCTACTCATGCTTTTGCTCGGAATTCCATGTTTCGTGATAGGAGCGAGTGCATGTTGAAAAGGTTTGTCTTCAGTTCTTATGTCCCTTTCTGTAGTCAAAGGCATGCCTAA

Protein sequence

>Msa0782160

MNLYDIKFDCFMVLFKCSESEYERDIPCEDAAKDALLYSYKSVQFHDAGITTTATKNIASKMRFNRWNHFNATNIDADDFHLSGTITESIMDSNSSSGKVGVLLETVQMKTRFQGDVHVYKSFLDILNTYRKESKSNTLVYKEVAALYQNHPDLLEWFIHFHPEATTAASTHAFARNSMFRDRSECMLKRFVFSSYVPFCSQRHA*