AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0782160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0782160 MtrunA17_Chr5g0415031 88.608 79 9 0 109 187 137 215 1.30e-40 147
Msa0782160 MtrunA17_Chr8g0364231 58.025 81 33 1 108 187 135 215 3.18e-20 88.2
Msa0782160 MtrunA17_Chr6g0452001 60.526 76 28 2 108 181 156 231 5.44e-20 87.4
Msa0782160 MtrunA17_Chr6g0452021 55.385 65 29 0 108 172 134 198 9.89e-16 74.7
Msa0782160 MtrunA17_Chr1g0156171 68.519 54 3 1 134 187 64 103 1.47e-15 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0782160 AT1G70060.2 57.143 77 32 1 108 184 108 183 8.89e-19 84.3
Msa0782160 AT1G70060.1 57.143 77 32 1 108 184 108 183 8.89e-19 84.3
Msa0782160 AT1G24190.1 61.905 63 24 0 108 170 107 169 5.31e-18 82.0
Msa0782160 AT1G24190.3 61.905 63 24 0 108 170 107 169 5.53e-18 82.0
Msa0782160 AT1G24190.2 61.905 63 24 0 108 170 107 169 5.63e-18 82.0
Msa0782160 AT1G59890.4 40.909 110 52 2 108 204 136 245 9.26e-18 81.6
Msa0782160 AT1G59890.3 40.909 110 52 2 108 204 136 245 9.27e-18 81.6
Msa0782160 AT1G59890.1 40.909 110 52 2 108 204 136 245 9.54e-18 81.3
Msa0782160 AT1G59890.2 40.909 110 52 2 108 204 136 245 9.73e-18 81.3
Msa0782160 AT1G24200.1 45.455 88 44 1 108 191 104 191 2.65e-15 71.6
Msa0782160 AT3G01320.1 46.835 79 40 1 108 184 149 227 5.42e-15 73.6
Msa0782160 AT3G01320.2 46.835 79 40 1 108 184 149 227 5.57e-15 73.6
Msa0782160 AT1G10450.3 50.769 65 32 0 107 171 174 238 1.05e-13 69.7
Msa0782160 AT1G10450.2 50.769 65 32 0 107 171 123 187 1.07e-13 69.7
Msa0782160 AT1G10450.1 50.769 65 32 0 107 171 123 187 1.07e-13 69.7
Msa0782160 AT5G15020.2 45.946 74 40 0 108 181 143 216 1.75e-13 68.9
Msa0782160 AT5G15020.1 45.946 74 40 0 108 181 143 216 1.86e-13 68.9

Find 92 sgRNAs with CRISPR-Local

Find 600 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCAAATTTGATTGCTTTA+TGG 0.186233 5_2:-64945770 Msa0782160:CDS
GCTGATGATTTCCATCTTTC+CGG 0.205156 5_2:-64945097 Msa0782160:CDS
TCATGTTTACAAGTCATTTC+TGG 0.210390 5_2:-64934692 Msa0782160:CDS
GATGCAGCTGTGGTGGCTTC+TGG 0.252610 5_2:+64934439 None:intergenic
TTACCATGTGATAAAATCAT+AGG 0.274962 5_2:+64933784 None:intergenic
TTGCTGCATAATGATAGATA+TGG 0.282050 5_2:-64933734 Msa0782160:three_prime_UTR
GTACAAATAGATTCTAGATT+TGG 0.290540 5_2:-64934081 Msa0782160:three_prime_UTR
CAAGAAGATCCGGGTGGTTT+TGG 0.291474 5_2:+64934482 None:intergenic
ATGCCGCCATCTGAAAATTT+AGG 0.303892 5_2:+64933165 None:intergenic
ATGCACACCTTCACATAGTT+TGG 0.308272 5_2:+64933631 None:intergenic
ATGCACACCTTCACATAGTT+TGG 0.312712 5_2:+64933579 None:intergenic
ATGCACACCTTAACATAGTT+TGG 0.325115 5_2:+64933432 None:intergenic
CGGCAAGGTTGGTGTGTTGC+TGG 0.346048 5_2:-64944674 Msa0782160:CDS
GGAATTCCATGTTTCGTGAT+AGG 0.385326 5_2:-64934399 Msa0782160:CDS
TAATTGCAAGCAATGAGATT+TGG 0.390645 5_2:-64933870 Msa0782160:three_prime_UTR
CGATCTCAGTTCAGCTCCTT+AGG 0.393834 5_2:+64934312 None:intergenic
GTAAGCACTATGCAACAATA+TGG 0.397559 5_2:+64933475 None:intergenic
GTAAGCACTATGCAGCAATA+TGG 0.399421 5_2:+64933674 None:intergenic
AGATAAAACAAATATAGATT+AGG 0.403080 5_2:-64933985 Msa0782160:three_prime_UTR
TGCTGCATAATGATAGATAT+GGG 0.439704 5_2:-64933733 Msa0782160:three_prime_UTR
AGTTCAAAGTTTCATGATGC+AGG 0.455312 5_2:-64945202 Msa0782160:intron
ACCACCCGGATCTTCTTGAA+TGG 0.456644 5_2:-64934477 Msa0782160:CDS
ATAAACCATTCAAGAAGATC+CGG 0.459794 5_2:+64934472 None:intergenic
TTTATTCAGACTCGGTTTCA+GGG 0.460856 5_2:-64934721 Msa0782160:intron
CTGTCATCCAAACTATGTTA+AGG 0.468221 5_2:-64933439 Msa0782160:intron
TAGTTTGGATGGCAGCTTCA+AGG 0.469023 5_2:+64933594 None:intergenic
TAGTTTGGATGGCAGCTTCA+AGG 0.469023 5_2:+64933646 None:intergenic
TTACAACTTATCAAAACGTA+TGG 0.469598 5_2:+64933226 None:intergenic
ATCTATCATTATGCAGCAAA+AGG 0.470288 5_2:+64933738 None:intergenic
CACATACCTCTTTGTAGACC+AGG 0.470385 5_2:+64934629 None:intergenic
TAAAATATTTGTTACCACAT+AGG 0.479092 5_2:+64933708 None:intergenic
ATCCATGATTGATTCAGTTA+TGG 0.480855 5_2:+64945072 None:intergenic
CACCATAACTGAATCAATCA+TGG 0.481592 5_2:-64945074 Msa0782160:CDS
ATCTGCCATTATGCAGCAAA+AGG 0.488961 5_2:+64933539 None:intergenic
TAGTTTGGATGACAGCTTCA+AGG 0.490162 5_2:+64933447 None:intergenic
CAGTTATGGTGCCGGAAAGA+TGG 0.496361 5_2:+64945086 None:intergenic
GGAGCGAGTGCATGTTGAAA+AGG 0.499220 5_2:-64934378 Msa0782160:CDS
CGATGTTGGTTGCGTTAAAG+TGG 0.506854 5_2:+64945122 None:intergenic
GGTGTGCATAGTGGCAGATA+TGG 0.509951 5_2:-64933565 Msa0782160:three_prime_UTR
CTAAGATGCGGTTTAACCGT+TGG 0.512069 5_2:-64945147 Msa0782160:CDS
TTAGGATTGTTGCTTTACAT+AGG 0.518730 5_2:-64933967 Msa0782160:three_prime_UTR
TCCTTGAGCTAGCAGCGGCA+AGG 0.522884 5_2:-64944689 Msa0782160:intron
TGAGCTAGCAGCGGCAAGGT+TGG 0.531949 5_2:-64944685 Msa0782160:intron
AGCTATATATATTGCGTGGT+GGG 0.536333 5_2:-64934136 Msa0782160:three_prime_UTR
CTCGCTCCTATCACGAAACA+TGG 0.539403 5_2:+64934393 None:intergenic
GATTGATTCAGTTATGGTGC+CGG 0.540195 5_2:+64945078 None:intergenic
ATGTCCCTTTCTGTAGTCAA+AGG 0.541221 5_2:-64934339 Msa0782160:CDS
TACCATGTGATAAAATCATA+GGG 0.542759 5_2:+64933785 None:intergenic
GGTTGGTGTGTTGCTGGAGA+CGG 0.544110 5_2:-64944668 Msa0782160:CDS
TTGCTGCATAATGGCAGATG+TGG 0.561704 5_2:-64933535 Msa0782160:three_prime_UTR
TACAACTTATCAAAACGTAT+GGG 0.565267 5_2:+64933227 None:intergenic
GCATGCCTTTGACTACAGAA+AGG 0.565598 5_2:+64934334 None:intergenic
CATATTGAATACATACAGAA+AGG 0.566288 5_2:-64934668 Msa0782160:CDS
CATGCCTTTGACTACAGAAA+GGG 0.567694 5_2:+64934335 None:intergenic
GCAGTAGTGATAATAATGAC+AGG 0.569901 5_2:+64933343 None:intergenic
GCTGGAGACGGTGCAAATGA+AGG 0.569996 5_2:-64944656 Msa0782160:intron
TGCTGCATAATGGCAGATGT+GGG 0.571015 5_2:-64933534 Msa0782160:three_prime_UTR
ATCTCATACATCAAGGTGAA+GGG 0.575302 5_2:+64934166 None:intergenic
TGTAGTCAAAGGCATGCCTA+AGG 0.575426 5_2:-64934328 Msa0782160:exon
GAAATCATCAGCATCGATGT+TGG 0.576874 5_2:+64945108 None:intergenic
ATGAAGCTCAAGAATTTACA+TGG 0.584053 5_2:-64933918 Msa0782160:three_prime_UTR
ACACCTTCACATAGTTTGGA+TGG 0.584468 5_2:+64933583 None:intergenic
ACACCTTCACATAGTTTGGA+TGG 0.584468 5_2:+64933635 None:intergenic
GGCAGATGTGGGCACTTATG+TGG 0.590605 5_2:-64933523 Msa0782160:three_prime_UTR
AGCTTGCATCTCATACATCA+AGG 0.591109 5_2:+64934159 None:intergenic
AAGATGCTCAATTCTAACAA+TGG 0.593467 5_2:+64934021 None:intergenic
TTGCGTTAAAGTGGTTCCAA+CGG 0.599126 5_2:+64945131 None:intergenic
CAATCATGGATTCCAACTCA+AGG 0.600035 5_2:-64945060 Msa0782160:intron
GATAGATATGGGCACCTATG+TGG 0.606646 5_2:-64933722 Msa0782160:three_prime_UTR
TAAACCATTCAAGAAGATCC+GGG 0.611295 5_2:+64934473 None:intergenic
CATCTCATACATCAAGGTGA+AGG 0.611363 5_2:+64934165 None:intergenic
AAAACATTGCCTCTAAGATG+CGG 0.617095 5_2:-64945159 Msa0782160:CDS
GTACAGTTATAAGTCTGTGC+AGG 0.625107 5_2:-64945299 Msa0782160:intron
TGCAAGCAATGAGATTTGGT+AGG 0.629379 5_2:-64933866 Msa0782160:three_prime_UTR
AGTATGAGAGAGATATTCCA+TGG 0.629874 5_2:-64945723 Msa0782160:intron
CTGCCATCCAAACTATGTGA+AGG 0.634548 5_2:-64933586 Msa0782160:three_prime_UTR
CTGCCATCCAAACTATGTGA+AGG 0.634548 5_2:-64933638 Msa0782160:three_prime_UTR
TAGCTATATATATTGCGTGG+TGG 0.636378 5_2:-64934137 Msa0782160:three_prime_UTR
TCTCATACATCAAGGTGAAG+GGG 0.636849 5_2:+64934167 None:intergenic
TTGCAGTGAAGATGCTGCAA+AGG 0.638120 5_2:-64945332 Msa0782160:intron
ATGAGTAGATGCAGCTGTGG+TGG 0.641754 5_2:+64934432 None:intergenic
TATCAATGTTGTGTATCTCA+TGG 0.644304 5_2:-64933811 Msa0782160:three_prime_UTR
TGCACTCTACCAAAACCACC+CGG 0.648841 5_2:-64934491 Msa0782160:CDS
CTATGTGAAGGTGTGCATAG+TGG 0.657846 5_2:-64933574 Msa0782160:three_prime_UTR
AGCTAGCTATATATATTGCG+TGG 0.664640 5_2:-64934140 Msa0782160:three_prime_UTR
AAAAGTTATCCTCTCCGCTG+TGG 0.665072 5_2:+64933134 None:intergenic
TAACACCCTGGTCTACAAAG+AGG 0.665433 5_2:-64934635 Msa0782160:intron
GGAAAGTAAGTCTAACACCC+TGG 0.674822 5_2:-64934647 Msa0782160:CDS
ACATACCTCTTTGTAGACCA+GGG 0.680303 5_2:+64934630 None:intergenic
AGCATGAGTAGATGCAGCTG+TGG 0.685753 5_2:+64934429 None:intergenic
TGAACTGAGATCGTAGATCG+CGG 0.711913 5_2:-64934302 Msa0782160:three_prime_UTR
ACCATTCAAGAAGATCCGGG+TGG 0.747614 5_2:+64934476 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+AGG + chr5_2:64940185-64940204 None:intergenic 0.0%
!! TAATATAAATTTAAACATGT+TGG - chr5_2:64934552-64934571 Msa0782160:intron 10.0%
!! TAATATTATACATTTATTGA+AGG + chr5_2:64935392-64935411 None:intergenic 10.0%
!!! TAATATTACTTTTTTTGATA+AGG - chr5_2:64935404-64935423 Msa0782160:intron 10.0%
!! AAAGTAAATTATACATTTAT+GGG + chr5_2:64935449-64935468 None:intergenic 10.0%
!! AAAAGTAAATTATACATTTA+TGG + chr5_2:64935450-64935469 None:intergenic 10.0%
!!! AATGATGTAATATTTTTTTA+AGG - chr5_2:64936207-64936226 Msa0782160:intron 10.0%
!!! TTTAATTGAGTTTAATTTTT+TGG - chr5_2:64937407-64937426 Msa0782160:intron 10.0%
!!! TGATTTTATAGTAATTTTAT+CGG + chr5_2:64937472-64937491 None:intergenic 10.0%
!!! ATTTGTTTTTGTTAATTTTT+AGG - chr5_2:64938007-64938026 Msa0782160:intron 10.0%
!!! TTTTTAATGATTCTAATATT+AGG - chr5_2:64938231-64938250 Msa0782160:intron 10.0%
!! TTTCTTAAGAAAAAAATTTA+TGG + chr5_2:64939119-64939138 None:intergenic 10.0%
!!! AGAAAATAATTGATATTTTA+AGG + chr5_2:64939158-64939177 None:intergenic 10.0%
!!! GTTTTTCTTAAAAAAAAAAT+TGG + chr5_2:64940510-64940529 None:intergenic 10.0%
!!! TAATTTTTTTTTACCAAAAA+TGG + chr5_2:64940595-64940614 None:intergenic 10.0%
!! TAAAATGTATAATTAAATGA+AGG + chr5_2:64941038-64941057 None:intergenic 10.0%
!!! TTCAATTTTTTAACAAAATA+TGG - chr5_2:64941551-64941570 Msa0782160:intron 10.0%
!!! CAAATATTTGTTTTAATTTT+TGG + chr5_2:64941622-64941641 None:intergenic 10.0%
!! CAAAAATTAAAACAAATATT+TGG - chr5_2:64941620-64941639 Msa0782160:intron 10.0%
!!! TATTTTATTAAATTTTTCGT+AGG - chr5_2:64941648-64941667 Msa0782160:intron 10.0%
!!! ATATGATTTAGTTTTTTTTA+AGG + chr5_2:64942477-64942496 None:intergenic 10.0%
!!! TGTTGATAATTTATTTTTTT+TGG + chr5_2:64942507-64942526 None:intergenic 10.0%
!!! TAATATTTTTCAAAAATTCT+TGG - chr5_2:64942650-64942669 Msa0782160:intron 10.0%
!!! TGATTTTTTTTTTAACTATT+TGG - chr5_2:64943763-64943782 Msa0782160:intron 10.0%
!!! TTTTTGGATAAAAAAAATTT+AGG + chr5_2:64944106-64944125 None:intergenic 10.0%
!! ATGTTTAAAAAAATATAAAG+TGG + chr5_2:64945614-64945633 None:intergenic 10.0%
!! ATAAAGAAGAAAATAAGAAT+GGG + chr5_2:64933283-64933302 None:intergenic 15.0%
!!! AAATCAATTTTACAAAACAT+TGG + chr5_2:64933386-64933405 None:intergenic 15.0%
!! TGTTTATAAAAAATCAGAAT+TGG - chr5_2:64933507-64933526 Msa0782160:three_prime_UTR 15.0%
!! AAGTTAAAAAAAATGCAATA+GGG + chr5_2:64934101-64934120 None:intergenic 15.0%
!! TAAGTTAAAAAAAATGCAAT+AGG + chr5_2:64934102-64934121 None:intergenic 15.0%
!!! TGCATTTTTTTTAACTTATA+TGG - chr5_2:64934104-64934123 Msa0782160:three_prime_UTR 15.0%
!!! ATTTAATTTCATATGAATGT+AGG + chr5_2:64934421-64934440 None:intergenic 15.0%
!! ATTAAATAACATCTTAATCT+TGG - chr5_2:64934434-64934453 Msa0782160:CDS 15.0%
!!! ATATTATCTTTTAAGTTTGA+CGG + chr5_2:64934633-64934652 None:intergenic 15.0%
!!! TTAGAAATTTTAAATTGTTG+TGG - chr5_2:64935310-64935329 Msa0782160:intron 15.0%
!!! TTTTAATGAGTCTAATATTT+TGG - chr5_2:64935338-64935357 Msa0782160:intron 15.0%
!! TAAAGTATATAATGAGTTAT+TGG + chr5_2:64935495-64935514 None:intergenic 15.0%
!! CATAACATGTTAAAAAATAT+GGG + chr5_2:64935672-64935691 None:intergenic 15.0%
!!! GAACTATTTTTTTTAGTTTT+TGG - chr5_2:64935962-64935981 Msa0782160:intron 15.0%
!!! TGTGATTTTTTTTTTTTTGA+GGG + chr5_2:64936168-64936187 None:intergenic 15.0%
!!! ATGTGATTTTTTTTTTTTTG+AGG + chr5_2:64936169-64936188 None:intergenic 15.0%
!! AAAAAGTTTAAATGTGTAAT+TGG + chr5_2:64936640-64936659 None:intergenic 15.0%
!! AAAGATAATAGAAATGATAA+AGG + chr5_2:64936781-64936800 None:intergenic 15.0%
!! CCTTAAAATATTATGTATAT+TGG + chr5_2:64937069-64937088 None:intergenic 15.0%
!!! CCAATATACATAATATTTTA+AGG - chr5_2:64937066-64937085 Msa0782160:intron 15.0%
!!! TACATAATATTTTAAGGTTT+TGG - chr5_2:64937072-64937091 Msa0782160:intron 15.0%
!!! ACATAATATTTTAAGGTTTT+GGG - chr5_2:64937073-64937092 Msa0782160:intron 15.0%
!!! AGTTAAAATTTTACGATAAA+TGG - chr5_2:64937823-64937842 Msa0782160:intron 15.0%
!! TGATGAAGTTATAAATTATT+GGG + chr5_2:64938268-64938287 None:intergenic 15.0%
!! TTGATGAAGTTATAAATTAT+TGG + chr5_2:64938269-64938288 None:intergenic 15.0%
!! AAATTTAAACATGAGAAAAA+TGG + chr5_2:64938330-64938349 None:intergenic 15.0%
!!! TTAAAAAGCATTTGTTTAAT+AGG + chr5_2:64939296-64939315 None:intergenic 15.0%
!!! ATTAAACAAATGCTTTTTAA+TGG - chr5_2:64939296-64939315 Msa0782160:intron 15.0%
!!! ATATAATCTGACATATTTTT+AGG - chr5_2:64939561-64939580 Msa0782160:intron 15.0%
!!! GTTTTGATAAAAAAAAAACA+AGG + chr5_2:64939589-64939608 None:intergenic 15.0%
!! GAATTAATTCAAATTATTTC+TGG + chr5_2:64939619-64939638 None:intergenic 15.0%
!!! ATTATTCGTTGTATTTTTAA+AGG - chr5_2:64939779-64939798 Msa0782160:intron 15.0%
!! TAAATTCTTAATACTCAAAT+TGG - chr5_2:64939925-64939944 Msa0782160:intron 15.0%
!!! AAATTCAATTAGTTTTTCAT+TGG - chr5_2:64940431-64940450 Msa0782160:intron 15.0%
!!! TTTTGGTAAAAAAAAATTAG+CGG - chr5_2:64940596-64940615 Msa0782160:intron 15.0%
!!! TTCCTTAACAAATTTTTTTT+TGG - chr5_2:64940670-64940689 Msa0782160:intron 15.0%
!!! TACCAAAAAAAAATTTGTTA+AGG + chr5_2:64940675-64940694 None:intergenic 15.0%
!!! AATTTTTTTTTGGTAATGAA+TGG - chr5_2:64940680-64940699 Msa0782160:intron 15.0%
!!! ATTTTTTTTTGGTAATGAAT+GGG - chr5_2:64940681-64940700 Msa0782160:intron 15.0%
!!! GCTTAATAATATTTGTTTTT+TGG + chr5_2:64940854-64940873 None:intergenic 15.0%
!! AACAAATATTATTAAGCAAA+AGG - chr5_2:64940857-64940876 Msa0782160:intron 15.0%
!!! AGAATTAAGCTTTATTTTAA+CGG - chr5_2:64940966-64940985 Msa0782160:intron 15.0%
!!! TTGAACAAATTATTTTTTAG+AGG - chr5_2:64941343-64941362 Msa0782160:intron 15.0%
!!! AATTATTTTTTAGAGGAAAA+AGG - chr5_2:64941350-64941369 Msa0782160:intron 15.0%
!!! ATTTTTGGAAAAATAAATCA+AGG + chr5_2:64941607-64941626 None:intergenic 15.0%
!!! AAATGATTTTCTATTTACTT+AGG - chr5_2:64941686-64941705 Msa0782160:intron 15.0%
!! CAACAAAAATAAATCAAAAT+AGG + chr5_2:64941849-64941868 None:intergenic 15.0%
!!! ATAAAATTTTCACCATAAAA+AGG - chr5_2:64941919-64941938 Msa0782160:intron 15.0%
!! AGCAAAATTATAATTTGAAA+CGG - chr5_2:64942414-64942433 Msa0782160:intron 15.0%
!! TTCTCCTTAAAAAAATAATT+TGG + chr5_2:64942440-64942459 None:intergenic 15.0%
!!! TGTACTTTTCAAAAAAATTA+AGG - chr5_2:64943385-64943404 Msa0782160:intron 15.0%
!! TAGTAAATAACAACTAAAAA+AGG - chr5_2:64943631-64943650 Msa0782160:intron 15.0%
!!! TTATTTTTACTAAAAATCTC+AGG + chr5_2:64943897-64943916 None:intergenic 15.0%
!!! TAGTTAAGACATATTTTTTT+TGG + chr5_2:64944122-64944141 None:intergenic 15.0%
!! AGATAAAACAAATATAGATT+AGG - chr5_2:64944947-64944966 Msa0782160:intron 15.0%
!! TATCAAATTTGATTGCTTTA+TGG - chr5_2:64933162-64933181 Msa0782160:three_prime_UTR 20.0%
!! CATAAAGAAGAAAATAAGAA+TGG + chr5_2:64933284-64933303 None:intergenic 20.0%
!! GCATTTCTTAAATTTCTTTA+TGG - chr5_2:64933303-64933322 Msa0782160:three_prime_UTR 20.0%
!!! AAATTTCTTTATGGTTTTGT+TGG - chr5_2:64933312-64933331 Msa0782160:three_prime_UTR 20.0%
!!! AATTTCTTTATGGTTTTGTT+GGG - chr5_2:64933313-64933332 Msa0782160:three_prime_UTR 20.0%
!!! ATTTTAATTTTACCTTGAGT+TGG + chr5_2:64933887-64933906 None:intergenic 20.0%
!! AGTTAAAAAAAATGCAATAG+GGG + chr5_2:64934100-64934119 None:intergenic 20.0%
!!! ATACTTAAGGCTTAAATTTT+TGG - chr5_2:64934731-64934750 Msa0782160:intron 20.0%
!! GGATCATATTATTTATTTGT+TGG + chr5_2:64934996-64935015 None:intergenic 20.0%
!! AAATAAAAATATCACAACGT+CGG + chr5_2:64935129-64935148 None:intergenic 20.0%
!! TAAATTATACATTTATGGGT+TGG + chr5_2:64935445-64935464 None:intergenic 20.0%
!! GCATAACATGTTAAAAAATA+TGG + chr5_2:64935673-64935692 None:intergenic 20.0%
!!! GTATTTAAAATAGTAGAGAT+TGG + chr5_2:64936063-64936082 None:intergenic 20.0%
!!! ATTTTAAATACCTTCTCTTT+TGG - chr5_2:64936072-64936091 Msa0782160:intron 20.0%
!! TTAAGGTTTAAATGTGTAAT+TGG - chr5_2:64936224-64936243 Msa0782160:intron 20.0%
!! CTTTGTAAAAATATTGGTAT+TGG - chr5_2:64936375-64936394 Msa0782160:intron 20.0%
!!! CTTTGAAAAAATATTGGTAT+TGG + chr5_2:64936458-64936477 None:intergenic 20.0%
!! CTTTGTAAAAATATTGGTAT+TGG + chr5_2:64936375-64936394 None:intergenic 20.0%
!! ATCTTTCATAAAAAAGAGAA+AGG + chr5_2:64936839-64936858 None:intergenic 20.0%
!!! TTGAACATTTTTAAATGTTG+TGG - chr5_2:64937378-64937397 Msa0782160:intron 20.0%
!!! TTGATGTAATTTAATGGATT+GGG + chr5_2:64937646-64937665 None:intergenic 20.0%
!!! ATTGATGTAATTTAATGGAT+TGG + chr5_2:64937647-64937666 None:intergenic 20.0%
!!! ATACATGTATCTAAAGATTT+TGG - chr5_2:64937886-64937905 Msa0782160:intron 20.0%
!!! AAAGATTTTGGATAAAAATG+TGG - chr5_2:64937898-64937917 Msa0782160:intron 20.0%
!! AAACAAATCATTGTAATGAT+GGG + chr5_2:64937995-64938014 None:intergenic 20.0%
!! AAAACAAATCATTGTAATGA+TGG + chr5_2:64937996-64938015 None:intergenic 20.0%
!!! ACTTTGATGGAATTATTTTT+TGG - chr5_2:64938082-64938101 Msa0782160:intron 20.0%
!!! ATTTAAAATTCCTTCACTTT+TGG - chr5_2:64938115-64938134 Msa0782160:intron 20.0%
!! CCTAATCTGATAAAAATTTA+GGG + chr5_2:64939070-64939089 None:intergenic 20.0%
!! ACCTAATCTGATAAAAATTT+AGG + chr5_2:64939071-64939090 None:intergenic 20.0%
!! TTATGGAGAAAAAAAAAACT+AGG + chr5_2:64939102-64939121 None:intergenic 20.0%
!!! AAGATTTTATTGATCATCAT+AGG - chr5_2:64939226-64939245 Msa0782160:intron 20.0%
!! GTCTAATTGAATGTATTTAT+TGG + chr5_2:64939451-64939470 None:intergenic 20.0%
!! TGAAAAATTGAAATAAACGT+GGG + chr5_2:64939695-64939714 None:intergenic 20.0%
!!! TAAAACTTTTTCAACTCAAA+TGG + chr5_2:64939907-64939926 None:intergenic 20.0%
!! ATGTTAGAAAGTTATATTTG+TGG - chr5_2:64940157-64940176 Msa0782160:intron 20.0%
!! AAACAATGATGATAATTTGA+TGG - chr5_2:64940376-64940395 Msa0782160:intron 20.0%
!! ACTTATTAATCATGTTTCAA+AGG + chr5_2:64940405-64940424 None:intergenic 20.0%
!! AAATGAAAGAAGATTTACAT+AGG - chr5_2:64940782-64940801 Msa0782160:intron 20.0%
!!! AATTTTTTTTCTAACGTTGA+TGG - chr5_2:64941114-64941133 Msa0782160:intron 20.0%
!! TGATTCATATTTAGAAACAA+CGG - chr5_2:64941138-64941157 Msa0782160:intron 20.0%
!!! TACCATTGCAAATTTTTTAA+AGG - chr5_2:64941180-64941199 Msa0782160:intron 20.0%
!!! TACCTTTAAAAAATTTGCAA+TGG + chr5_2:64941185-64941204 None:intergenic 20.0%
!!! AGTGATAATGTATGATTAAA+TGG - chr5_2:64941501-64941520 Msa0782160:intron 20.0%
!!! ATTTTCCAATCAAACTTATT+AGG + chr5_2:64941577-64941596 None:intergenic 20.0%
!!! ATCAAATCACTTTGTTTTAT+TGG - chr5_2:64942272-64942291 Msa0782160:intron 20.0%
!!! TTTTTTCTTTCTATGAAACA+TGG + chr5_2:64942587-64942606 None:intergenic 20.0%
!! TATAAGCGAGTTAAAAAAAA+TGG - chr5_2:64942825-64942844 Msa0782160:intron 20.0%
!! TTCTTTGAATGAATATGAAA+TGG - chr5_2:64942979-64942998 Msa0782160:intron 20.0%
!! CAATTGTTCTCTATAAATAT+TGG + chr5_2:64943016-64943035 None:intergenic 20.0%
!! ACGTAATTATAAGACATTTA+TGG - chr5_2:64943082-64943101 Msa0782160:intron 20.0%
!!! ATTTTTTTGAAAAGTACACT+TGG + chr5_2:64943383-64943402 None:intergenic 20.0%
!! TGAATTCAAATAACTACATA+AGG + chr5_2:64943477-64943496 None:intergenic 20.0%
!! TCTGATTAAAATCAATTTCA+CGG + chr5_2:64943715-64943734 None:intergenic 20.0%
!!! TTGTAAATTTTTTGATGTCA+TGG + chr5_2:64944082-64944101 None:intergenic 20.0%
!!! CTATATTTGTTTTATCTAAC+TGG + chr5_2:64944944-64944963 None:intergenic 20.0%
!!! TAAAATATTTGTTACCACAT+AGG + chr5_2:64945227-64945246 None:intergenic 20.0%
!!! CTCATTTGAATTTTGAATAT+TGG - chr5_2:64945645-64945664 Msa0782160:intron 20.0%
! GACAAAGAACAAAATCATTA+GGG + chr5_2:64933342-64933361 None:intergenic 25.0%
! TGACAAAGAACAAAATCATT+AGG + chr5_2:64933343-64933362 None:intergenic 25.0%
! AATTGTTGCACTAACATAAT+CGG - chr5_2:64934145-64934164 Msa0782160:three_prime_UTR 25.0%
!! ACATTTTATATACACTAGCA+TGG - chr5_2:64934579-64934598 Msa0782160:intron 25.0%
!! ATATCTGATTCATTCACTTT+TGG - chr5_2:64935217-64935236 Msa0782160:intron 25.0%
! AATGAAAAGAGAAACAAGTA+AGG + chr5_2:64935542-64935561 None:intergenic 25.0%
! ACATGTTAAAAAATATGGGT+TGG + chr5_2:64935668-64935687 None:intergenic 25.0%
!! AATATATACTTTTGCTTCCA+AGG + chr5_2:64935793-64935812 None:intergenic 25.0%
! CTGAAAGACATTATGTATAT+TGG + chr5_2:64935838-64935857 None:intergenic 25.0%
! CAATATACATAATGTCTTTC+AGG - chr5_2:64935836-64935855 Msa0782160:intron 25.0%
! AAATAGTTCATCATAGTGTT+TGG + chr5_2:64935951-64935970 None:intergenic 25.0%
!!! CAATATTTTTACAAAGTGCA+GGG + chr5_2:64936493-64936512 None:intergenic 25.0%
! CTTTGTAAAAATATTGGCAT+TGG - chr5_2:64936315-64936334 Msa0782160:intron 25.0%
!!! TACTTTTTTTTGTTTGGCAT+TGG - chr5_2:64936344-64936363 Msa0782160:intron 25.0%
!!! CAATATTTTTACAAAGTGCA+GGG + chr5_2:64936493-64936512 None:intergenic 25.0%
!! CTTTGGAAAAATATTGCTAT+TGG - chr5_2:64936406-64936425 Msa0782160:intron 25.0%
!!! CAATATTTTTTCAAAGTGCA+GGG - chr5_2:64936462-64936481 Msa0782160:intron 25.0%
!!! CAATATTTTTACAAAGTGCA+GGG - chr5_2:64936493-64936512 Msa0782160:intron 25.0%
! CTTTGTAAAAATATTGGCAT+TGG + chr5_2:64936315-64936334 None:intergenic 25.0%
!!! CAATATTTTTACAAAGTGCA+GGG - chr5_2:64936493-64936512 Msa0782160:intron 25.0%
!!! CACTTTTTTTTGTTTAGCAT+TGG + chr5_2:64936580-64936599 None:intergenic 25.0%
!!! GTTTTATTCATTGAAGTGTT+AGG + chr5_2:64936743-64936762 None:intergenic 25.0%
! CACAACATGGTAAAAAATAA+GGG + chr5_2:64936896-64936915 None:intergenic 25.0%
!! TCAAAATGTTTAGAGTTTCA+TGG + chr5_2:64937159-64937178 None:intergenic 25.0%
!!! ATTTTAACTTCCTTCAGTTT+TGG - chr5_2:64937288-64937307 Msa0782160:intron 25.0%
!!! TAATTTTATCGGTTCATTGA+AGG + chr5_2:64937461-64937480 None:intergenic 25.0%
!!! CTCTATTTGTTATAACATCA+TGG - chr5_2:64937492-64937511 Msa0782160:intron 25.0%
!!! TGATGTAATTTAATGGATTG+GGG + chr5_2:64937645-64937664 None:intergenic 25.0%
! ACATACTACATAGTCAAATA+AGG + chr5_2:64937703-64937722 None:intergenic 25.0%
! TGTAGTATGTCACATAATTA+AGG - chr5_2:64937713-64937732 Msa0782160:intron 25.0%
! TAATTCAATGTAAGCTTCAT+AGG - chr5_2:64937965-64937984 Msa0782160:intron 25.0%
! AAACATGAGAAAAATGGTAA+GGG + chr5_2:64938324-64938343 None:intergenic 25.0%
! TAAACATGAGAAAAATGGTA+AGG + chr5_2:64938325-64938344 None:intergenic 25.0%
! CATTAACTTCTTCTCTTTAA+GGG + chr5_2:64938514-64938533 None:intergenic 25.0%
! ACATTAACTTCTTCTCTTTA+AGG + chr5_2:64938515-64938534 None:intergenic 25.0%
! CCTTAAGACATTAGATATAT+TGG + chr5_2:64938606-64938625 None:intergenic 25.0%
! CCAATATATCTAATGTCTTA+AGG - chr5_2:64938603-64938622 Msa0782160:intron 25.0%
!!! TAAGGTTTTGAATGAAGATA+TGG - chr5_2:64938621-64938640 Msa0782160:intron 25.0%
! TCCATATATCTAATGTCTTA+AGG - chr5_2:64938943-64938962 Msa0782160:intron 25.0%
! TCCTTAAGACATTAGATATA+TGG + chr5_2:64938947-64938966 None:intergenic 25.0%
! CTAAGTTGTATAATCACATT+AGG + chr5_2:64939012-64939031 None:intergenic 25.0%
!! CCCTAAATTTTTATCAGATT+AGG - chr5_2:64939067-64939086 Msa0782160:intron 25.0%
!!! CAATTTTAGAAGCAATTCAA+AGG - chr5_2:64939638-64939657 Msa0782160:intron 25.0%
! GAAAAATTGAAATAAACGTG+GGG + chr5_2:64939694-64939713 None:intergenic 25.0%
! CTGAAAAATTGAAATAAACG+TGG + chr5_2:64939696-64939715 None:intergenic 25.0%
!! CACGTTTATTTCAATTTTTC+AGG - chr5_2:64939694-64939713 Msa0782160:intron 25.0%
!!! AATTTTCAAAGTATCATCAG+AGG - chr5_2:64939724-64939743 Msa0782160:intron 25.0%
!!! ACGTGACATTTTTTTTTCTT+GGG + chr5_2:64940091-64940110 None:intergenic 25.0%
! TAGAGTAACTAAATCATCAT+AGG + chr5_2:64940300-64940319 None:intergenic 25.0%
! GATGATTTAGTTACTCTAAT+TGG - chr5_2:64940302-64940321 Msa0782160:intron 25.0%
! AAAATGGTAACAATCACATT+TGG + chr5_2:64940579-64940598 None:intergenic 25.0%
!! AATGTGATTGTTACCATTTT+TGG - chr5_2:64940579-64940598 Msa0782160:intron 25.0%
!! ATGAATGGGTATTTCTTTTT+AGG - chr5_2:64940695-64940714 Msa0782160:intron 25.0%
! TTAGGAAATGGATCTTTAAT+CGG - chr5_2:64940713-64940732 Msa0782160:intron 25.0%
! CCAAATAAGAACAATTACAT+TGG + chr5_2:64940889-64940908 None:intergenic 25.0%
! CCAATGTAATTGTTCTTATT+TGG - chr5_2:64940886-64940905 Msa0782160:intron 25.0%
! ATATTTAGAAACAACGGAAA+TGG - chr5_2:64941144-64941163 Msa0782160:intron 25.0%
! AATTCCTTCAACATGATAAA+TGG + chr5_2:64941325-64941344 None:intergenic 25.0%
! ATTTACCTTCAATTCCTTAA+TGG + chr5_2:64941398-64941417 None:intergenic 25.0%
! AGTTGATTACATAATATGCA+TGG + chr5_2:64941439-64941458 None:intergenic 25.0%
!! AATTGAACAAGCAAGAATTT+TGG + chr5_2:64941538-64941557 None:intergenic 25.0%
! TTGGAAAAATAAATCAAGGT+AGG + chr5_2:64941603-64941622 None:intergenic 25.0%
! ATACATGCTAACAATTCAAA+AGG + chr5_2:64941878-64941897 None:intergenic 25.0%
!!! TTTTTTTGAAGGAATGTTGT+TGG + chr5_2:64942375-64942394 None:intergenic 25.0%
!!! GTTGTTGGTTTTTTTTTTGA+AGG + chr5_2:64942386-64942405 None:intergenic 25.0%
!!! ACGGCCAAATTATTTTTTTA+AGG - chr5_2:64942433-64942452 Msa0782160:intron 25.0%
!!! ATGTTCTTTTTAGTGTTTAC+TGG + chr5_2:64942548-64942567 None:intergenic 25.0%
! AAGATTGAGAAAGATTGATA+AGG + chr5_2:64942631-64942650 None:intergenic 25.0%
! AATTTAGATGTCTAATTGCT+AGG - chr5_2:64942740-64942759 Msa0782160:intron 25.0%
! AAGACATTTATGGACATTAA+AGG - chr5_2:64943092-64943111 Msa0782160:intron 25.0%
! AGACATTTATGGACATTAAA+GGG - chr5_2:64943093-64943112 Msa0782160:intron 25.0%
!! AATAGAGAGCATATTCTTAT+AGG - chr5_2:64943168-64943187 Msa0782160:intron 25.0%
!!! TTTTGTATTGGCATTCATAT+CGG - chr5_2:64943198-64943217 Msa0782160:intron 25.0%
! TCGGTATCAATTGTAATAAA+TGG - chr5_2:64943217-64943236 Msa0782160:intron 25.0%
! ATCAATTGTAATAAATGGCA+AGG - chr5_2:64943222-64943241 Msa0782160:intron 25.0%
! TCTAATTGTAGCTTGATTAT+TGG + chr5_2:64943287-64943306 None:intergenic 25.0%
! TACATCCTTCTATCTTTATA+TGG - chr5_2:64943595-64943614 Msa0782160:intron 25.0%
! AGAATTTGTAAGCTTCTAAA+GGG - chr5_2:64943732-64943751 Msa0782160:intron 25.0%
! ACTAAAACTGTTCTGATATA+AGG - chr5_2:64943801-64943820 Msa0782160:intron 25.0%
! GATTTAAGAGAGTTTAAACA+CGG + chr5_2:64943962-64943981 None:intergenic 25.0%
! TAATATGTTGAAGATGATGA+TGG - chr5_2:64944033-64944052 Msa0782160:intron 25.0%
! CATATTGAATACATACAGAA+AGG - chr5_2:64944264-64944283 Msa0782160:intron 25.0%
! GTACAAATAGATTCTAGATT+TGG - chr5_2:64944851-64944870 Msa0782160:intron 25.0%
! TACCATGTGATAAAATCATA+GGG + chr5_2:64945150-64945169 None:intergenic 25.0%
! TTACCATGTGATAAAATCAT+AGG + chr5_2:64945151-64945170 None:intergenic 25.0%
! TACAACTTATCAAAACGTAT+GGG + chr5_2:64945708-64945727 None:intergenic 25.0%
! TTACAACTTATCAAAACGTA+TGG + chr5_2:64945709-64945728 None:intergenic 25.0%
!! TAATCTCCTAAATTTTCAGA+TGG - chr5_2:64945761-64945780 Msa0782160:CDS 25.0%
!! TATGTCACTTTCATGCAAAA+CGG - chr5_2:64933415-64933434 Msa0782160:intron 30.0%
!!! AATGTTTTTAGTTGCAGTTG+TGG + chr5_2:64933761-64933780 None:intergenic 30.0%
! ATCCATGATTGATTCAGTTA+TGG + chr5_2:64933863-64933882 None:intergenic 30.0%
TGTAAAGATCTCAGCTAATA+AGG + chr5_2:64934013-64934032 None:intergenic 30.0%
AGATCTTTACAGAGAATCAA+TGG - chr5_2:64934022-64934041 Msa0782160:three_prime_UTR 30.0%
! AAGGAGCATAAAGAAATTAG+AGG + chr5_2:64934066-64934085 None:intergenic 30.0%
ACCATTTGTATTAGTTGGAT+TGG - chr5_2:64934184-64934203 Msa0782160:three_prime_UTR 30.0%
TCCAATCCAACTAATACAAA+TGG + chr5_2:64934188-64934207 None:intergenic 30.0%
TTTCATATGAATGTAGGAGT+TGG + chr5_2:64934415-64934434 None:intergenic 30.0%
ACAAGAAAGGTTGAAGTAAT+TGG - chr5_2:64934529-64934548 Msa0782160:intron 30.0%
GAGTGAAAAACTCATACTTA+AGG - chr5_2:64934718-64934737 Msa0782160:intron 30.0%
AATAATGTGGATCAACTCAT+CGG + chr5_2:64934799-64934818 None:intergenic 30.0%
! TTGAGTTGTATGATCACATT+AGG + chr5_2:64935086-64935105 None:intergenic 30.0%
GAATGAATCAGATATAACAG+AGG + chr5_2:64935212-64935231 None:intergenic 30.0%
!! ATTCATTCACTTTTGGTCTT+TGG - chr5_2:64935224-64935243 Msa0782160:intron 30.0%
!! TAAAAAATATGGGTTGGTAG+TGG + chr5_2:64935662-64935681 None:intergenic 30.0%
!! CCAATATTTTTACAAAGTGC+AGG + chr5_2:64936492-64936511 None:intergenic 30.0%
CCTGCACTTTGTAAAAATAT+TGG - chr5_2:64936309-64936328 Msa0782160:intron 30.0%
!!! TCCCTGTACTTTTTTTTGTT+TGG - chr5_2:64936338-64936357 Msa0782160:intron 30.0%
! GCCAAACAAAAAAAAGTACA+GGG + chr5_2:64936342-64936361 None:intergenic 30.0%
! TGCCAAACAAAAAAAAGTAC+AGG + chr5_2:64936343-64936362 None:intergenic 30.0%
!! CCAATATTTTTACAAAGTGC+AGG + chr5_2:64936492-64936511 None:intergenic 30.0%
CCTGCACTTTGTAAAAATAT+TGG - chr5_2:64936309-64936328 Msa0782160:intron 30.0%
! CAATATTTTTCCAAAGTGCA+GGG + chr5_2:64936402-64936421 None:intergenic 30.0%
! CCTGCACTTTGAAAAAATAT+TGG + chr5_2:64936464-64936483 None:intergenic 30.0%
!!! CCAATATTTTTTCAAAGTGC+AGG - chr5_2:64936461-64936480 Msa0782160:intron 30.0%
CCTGCACTTTGTAAAAATAT+TGG + chr5_2:64936309-64936328 None:intergenic 30.0%
!! CCAATATTTTTACAAAGTGC+AGG - chr5_2:64936492-64936511 Msa0782160:intron 30.0%
!!! CACTTTTTTTTGTTTGGCAT+TGG + chr5_2:64936284-64936303 None:intergenic 30.0%
CCTGCACTTTGTAAAAATAT+TGG + chr5_2:64936309-64936328 None:intergenic 30.0%
!! CCAATATTTTTACAAAGTGC+AGG - chr5_2:64936492-64936511 Msa0782160:intron 30.0%
! TGCTAAACAAAAAAAAGTGC+AGG - chr5_2:64936581-64936600 Msa0782160:intron 30.0%
! GCTAAACAAAAAAAAGTGCA+GGG - chr5_2:64936582-64936601 Msa0782160:intron 30.0%
!! CTTTTAACAGATTTTGGCAT+TGG + chr5_2:64936609-64936628 None:intergenic 30.0%
! CAAAATCTGTTAAAAGTGCA+GGG - chr5_2:64936613-64936632 Msa0782160:intron 30.0%
TTAGGAATATAGCGAGTTAT+TGG + chr5_2:64936725-64936744 None:intergenic 30.0%
GCACAACATGGTAAAAAATA+AGG + chr5_2:64936897-64936916 None:intergenic 30.0%
!! GTGGAATTTTAAGTCACAAT+TGG + chr5_2:64937004-64937023 None:intergenic 30.0%
AGATCTACTTGCTTATATTG+TGG + chr5_2:64937023-64937042 None:intergenic 30.0%
! TGAAGGAGTTTGAGATATTT+GGG + chr5_2:64937444-64937463 None:intergenic 30.0%
! TTGAAGGAGTTTGAGATATT+TGG + chr5_2:64937445-64937464 None:intergenic 30.0%
TCTCTATTCTCATGAAAGAT+AGG - chr5_2:64937611-64937630 Msa0782160:intron 30.0%
!! GGTGGATTGATGTAATTTAA+TGG + chr5_2:64937652-64937671 None:intergenic 30.0%
AGTCAAATAAGGTCAAATTG+AGG + chr5_2:64937692-64937711 None:intergenic 30.0%
TTTGATGTCATTCACTTTGA+TGG - chr5_2:64938069-64938088 Msa0782160:intron 30.0%
GACACAACCTGTAAAAAAAT+GGG + chr5_2:64938442-64938461 None:intergenic 30.0%
AGACACAACCTGTAAAAAAA+TGG + chr5_2:64938443-64938462 None:intergenic 30.0%
ACGAAATATCCAACTAAGAT+TGG + chr5_2:64938466-64938485 None:intergenic 30.0%
! GTAATGATCCAACTCATTTT+AGG - chr5_2:64938680-64938699 Msa0782160:intron 30.0%
!! ACTCTATGATGTATTGATTG+CGG - chr5_2:64938720-64938739 Msa0782160:intron 30.0%
! TAGTGTGATTTAATGGATGA+AGG + chr5_2:64938841-64938860 None:intergenic 30.0%
ATCCATTAAATCACACTAAG+TGG - chr5_2:64938843-64938862 Msa0782160:intron 30.0%
AGATGCAGTGTTAATTAATG+TGG - chr5_2:64938976-64938995 Msa0782160:intron 30.0%
TATCATATACTCGTACTCAA+TGG - chr5_2:64939973-64939992 Msa0782160:intron 30.0%
!! TGAATTGCTTCTAAAATGCA+AGG + chr5_2:64940000-64940019 None:intergenic 30.0%
!!! GACGTGACATTTTTTTTTCT+TGG + chr5_2:64940092-64940111 None:intergenic 30.0%
CTCTAATTGGTAGAAAGTTA+AGG - chr5_2:64940315-64940334 Msa0782160:intron 30.0%
TGATTTCTCAACCAATCAAA+TGG + chr5_2:64940357-64940376 None:intergenic 30.0%
AAAAATTAGCGGAGTAAACT+TGG - chr5_2:64940607-64940626 Msa0782160:intron 30.0%
!! GGGTATTTCTTTTTAGGAAA+TGG - chr5_2:64940701-64940720 Msa0782160:intron 30.0%
CAAGTGAAAATGATGTAAGA+TGG - chr5_2:64941229-64941248 Msa0782160:intron 30.0%
AAGATGGATCGACTATATAT+AGG - chr5_2:64941245-64941264 Msa0782160:intron 30.0%
AGATGGATCGACTATATATA+GGG - chr5_2:64941246-64941265 Msa0782160:intron 30.0%
ATCGACTATATATAGGGAAA+AGG - chr5_2:64941252-64941271 Msa0782160:intron 30.0%
TCATCCATTTATCATGTTGA+AGG - chr5_2:64941318-64941337 Msa0782160:intron 30.0%
TTAGAGGAAAAAGGAATTGA+AGG - chr5_2:64941359-64941378 Msa0782160:intron 30.0%
GTAAATGATGATCACCATTA+AGG - chr5_2:64941381-64941400 Msa0782160:intron 30.0%
TATGGCCTAATAAGTTTGAT+TGG - chr5_2:64941569-64941588 Msa0782160:intron 30.0%
! CAAAGCAATTGTCCTTTTTA+TGG + chr5_2:64941934-64941953 None:intergenic 30.0%
CATAAAAAGGACAATTGCTT+TGG - chr5_2:64941932-64941951 Msa0782160:intron 30.0%
AGAAGTAACGTGTTTATTGT+AGG - chr5_2:64942091-64942110 Msa0782160:intron 30.0%
! TTTTGCTACGTTAATGTTGT+TGG + chr5_2:64942401-64942420 None:intergenic 30.0%
TGATAAGGATCTATGAAACA+TGG + chr5_2:64942616-64942635 None:intergenic 30.0%
ATATCAAATGATCGCTTGAA+AGG - chr5_2:64942706-64942725 Msa0782160:intron 30.0%
TATGGATCTAATATGTAACG+TGG + chr5_2:64942774-64942793 None:intergenic 30.0%
TTTATCAAAGTCAGGGATTA+TGG + chr5_2:64942792-64942811 None:intergenic 30.0%
AGACTTCTTTATCAAAGTCA+GGG + chr5_2:64942799-64942818 None:intergenic 30.0%
TAGACTTCTTTATCAAAGTC+AGG + chr5_2:64942800-64942819 None:intergenic 30.0%
GTAACGAAAGTTGTATATGA+TGG + chr5_2:64942937-64942956 None:intergenic 30.0%
ACAACTTTCGTTACGATATT+TGG - chr5_2:64942943-64942962 Msa0782160:intron 30.0%
TATGAATGCCAATACAAAAG+TGG + chr5_2:64943197-64943216 None:intergenic 30.0%
AGCATCCATATAAAGATAGA+AGG + chr5_2:64943603-64943622 None:intergenic 30.0%
ATCTTTATATGGATGCTTTG+TGG - chr5_2:64943606-64943625 Msa0782160:intron 30.0%
CAGAATTTGTAAGCTTCTAA+AGG - chr5_2:64943731-64943750 Msa0782160:intron 30.0%
ACTCTCTTAAATCTCTCTTT+AGG - chr5_2:64943969-64943988 Msa0782160:intron 30.0%
!!! AGTTTCAGTTTTGAGCTTAA+TGG - chr5_2:64944182-64944201 Msa0782160:intron 30.0%
TCATGTTTACAAGTCATTTC+TGG - chr5_2:64944240-64944259 Msa0782160:intron 30.0%
ATAAACCATTCAAGAAGATC+CGG + chr5_2:64944463-64944482 None:intergenic 30.0%
AAGATGCTCAATTCTAACAA+TGG + chr5_2:64944914-64944933 None:intergenic 30.0%
!! TTAGGATTGTTGCTTTACAT+AGG - chr5_2:64944965-64944984 Msa0782160:intron 30.0%
ATGAAGCTCAAGAATTTACA+TGG - chr5_2:64945014-64945033 Msa0782160:intron 30.0%
TAATTGCAAGCAATGAGATT+TGG - chr5_2:64945062-64945081 Msa0782160:CDS 30.0%
TATCAATGTTGTGTATCTCA+TGG - chr5_2:64945121-64945140 Msa0782160:CDS 30.0%
! AACCCTATGATTTTATCACA+TGG - chr5_2:64945145-64945164 Msa0782160:CDS 30.0%
ATCTATCATTATGCAGCAAA+AGG + chr5_2:64945197-64945216 None:intergenic 30.0%
TTGCTGCATAATGATAGATA+TGG - chr5_2:64945198-64945217 Msa0782160:intron 30.0%
TGCTGCATAATGATAGATAT+GGG - chr5_2:64945199-64945218 Msa0782160:intron 30.0%
!!! ATTGTCTGAGCATTTTTTTG+CGG - chr5_2:64945668-64945687 Msa0782160:intron 30.0%
AGTATGAGAGAGATATTCCA+TGG - chr5_2:64933209-64933228 Msa0782160:three_prime_UTR 35.0%
AAGTAGCTTTCAACATACCA+TGG + chr5_2:64933229-64933248 None:intergenic 35.0%
ATTATATCGGGATAAACCGA+AGG + chr5_2:64933678-64933697 None:intergenic 35.0%
AGTTCAAAGTTTCATGATGC+AGG - chr5_2:64933730-64933749 Msa0782160:three_prime_UTR 35.0%
!! AAAACATTGCCTCTAAGATG+CGG - chr5_2:64933773-64933792 Msa0782160:three_prime_UTR 35.0%
CACCATAACTGAATCAATCA+TGG - chr5_2:64933858-64933877 Msa0782160:three_prime_UTR 35.0%
GCATAAAGAAATTAGAGGAC+TGG + chr5_2:64934061-64934080 None:intergenic 35.0%
AAAAAAATGCAATAGGGGCT+GGG + chr5_2:64934095-64934114 None:intergenic 35.0%
AAAAAAAATGCAATAGGGGC+TGG + chr5_2:64934096-64934115 None:intergenic 35.0%
GGAACTCAAACTCAAGTAAA+AGG + chr5_2:64934394-64934413 None:intergenic 35.0%
CTTCATTAACTACGTCATAG+AGG + chr5_2:64934488-64934507 None:intergenic 35.0%
CTATGACGTAGTTAATGAAG+TGG - chr5_2:64934488-64934507 Msa0782160:CDS 35.0%
TTACTTCAACCTTTCTTGTG+TGG + chr5_2:64934528-64934547 None:intergenic 35.0%
! GAGTTGATCCACATTATTGT+TGG - chr5_2:64934801-64934820 Msa0782160:intron 35.0%
ATATCATGGTTCAACGTTGT+AGG - chr5_2:64934852-64934871 Msa0782160:intron 35.0%
TATCATGGTTCAACGTTGTA+GGG - chr5_2:64934853-64934872 Msa0782160:intron 35.0%
TCTCCTTTCTCATGAAAGAA+AGG - chr5_2:64935613-64935632 Msa0782160:intron 35.0%
GTTCCTTTCTTTCATGAGAA+AGG + chr5_2:64935619-64935638 None:intergenic 35.0%
GTTATGCCTCTGATCTTATT+TGG - chr5_2:64935686-64935705 Msa0782160:intron 35.0%
CTCTCACTAGATCAGAAATA+CGG - chr5_2:64935711-64935730 Msa0782160:intron 35.0%
TGTGAGTTAAACTTCTACCT+TGG - chr5_2:64935773-64935792 Msa0782160:intron 35.0%
!! TGTGGTGTCAATCTCATTTT+TGG - chr5_2:64935872-64935891 Msa0782160:intron 35.0%
!! GTGGTGTCAATCTCATTTTT+GGG - chr5_2:64935873-64935892 Msa0782160:intron 35.0%
!! TGGTGTCAATCTCATTTTTG+GGG - chr5_2:64935874-64935893 Msa0782160:intron 35.0%
!!! AGTTTTGAGCGAGCTTATAA+TGG + chr5_2:64935928-64935947 None:intergenic 35.0%
!! ATACCTTCTCTTTTGGTCTT+TGG - chr5_2:64936079-64936098 Msa0782160:intron 35.0%
! CAAAATCTGTTGAAAGTGCA+GGG + chr5_2:64936251-64936270 None:intergenic 35.0%
!! CTTTCAACAGATTTTGGCAT+TGG - chr5_2:64936255-64936274 Msa0782160:intron 35.0%
!!! TCCCTGCACTTTTTTTTGTT+TGG - chr5_2:64936278-64936297 Msa0782160:intron 35.0%
! GCCAAACAAAAAAAAGTGCA+GGG + chr5_2:64936522-64936541 None:intergenic 35.0%
! TGCCAAACAAAAAAAAGTGC+AGG + chr5_2:64936521-64936540 None:intergenic 35.0%
! GCAATATTTTTCCAAAGTGC+AGG + chr5_2:64936403-64936422 None:intergenic 35.0%
! TGCCAAACAAAAAAAAGTGC+AGG - chr5_2:64936521-64936540 Msa0782160:intron 35.0%
! GCCAAACAAAAAAAAGTGCA+GGG - chr5_2:64936522-64936541 Msa0782160:intron 35.0%
!!! TCCCTGCACTTTTTTTTGTT+TGG + chr5_2:64936278-64936297 None:intergenic 35.0%
! CCTGCACTTTTAACAGATTT+TGG + chr5_2:64936615-64936634 None:intergenic 35.0%
! CCAAAATCTGTTAAAAGTGC+AGG - chr5_2:64936612-64936631 Msa0782160:intron 35.0%
GAGAATAAGAGATGTGATAG+TGG + chr5_2:64937549-64937568 None:intergenic 35.0%
!! ATTCCTTCACTTTTGGTCTT+TGG - chr5_2:64938122-64938141 Msa0782160:intron 35.0%
GCTCTTCTCATGAAAGAAAT+GGG - chr5_2:64938385-64938404 Msa0782160:intron 35.0%
!! TTGGTGGCACTTTTATATAG+GGG + chr5_2:64938419-64938438 None:intergenic 35.0%
!!! GTTGGTGGCACTTTTATATA+GGG + chr5_2:64938420-64938439 None:intergenic 35.0%
CAACCTGTAAAAAAATGGGT+TGG + chr5_2:64938438-64938457 None:intergenic 35.0%
! TATGGTGTCAATCTCATTTG+TGG - chr5_2:64938639-64938658 Msa0782160:intron 35.0%
! ATGGTGTCAATCTCATTTGT+GGG - chr5_2:64938640-64938659 Msa0782160:intron 35.0%
TCATAGAGTTCAGAGTTATG+AGG + chr5_2:64938709-64938728 None:intergenic 35.0%
CACCACTTAGTGTGATTTAA+TGG + chr5_2:64938848-64938867 None:intergenic 35.0%
ATTGAATGCATCAGTAGATG+AGG - chr5_2:64938899-64938918 Msa0782160:intron 35.0%
!! GTTCATGTTAGCTCTTTTCT+TGG - chr5_2:64939031-64939050 Msa0782160:intron 35.0%
! TGCTTTTCAGATGATGTTAG+AGG + chr5_2:64939415-64939434 None:intergenic 35.0%
! ATCACAGTAGAGTCTAGTTT+AGG - chr5_2:64939751-64939770 Msa0782160:intron 35.0%
! TCACAGTAGAGTCTAGTTTA+GGG - chr5_2:64939752-64939771 Msa0782160:intron 35.0%
AGTACATGACTCCATTTGAT+TGG - chr5_2:64940343-64940362 Msa0782160:intron 35.0%
! ATATTTTGTTGCGTCTCACA+CGG - chr5_2:64940546-64940565 Msa0782160:intron 35.0%
GATCACCATTAAGGAATTGA+AGG - chr5_2:64941390-64941409 Msa0782160:intron 35.0%
TTTGAAGGAATGTTGTTGGT+TGG + chr5_2:64942371-64942390 None:intergenic 35.0%
TCAAGCGATCATTTGATATC+AGG + chr5_2:64942705-64942724 None:intergenic 35.0%
!! AGTTGTATATGATGGTGGTT+CGG + chr5_2:64942929-64942948 None:intergenic 35.0%
ACGAAAGTTGTATATGATGG+TGG + chr5_2:64942934-64942953 None:intergenic 35.0%
AAGGGTGATTGTTTGATTAG+TGG - chr5_2:64943111-64943130 Msa0782160:intron 35.0%
!!! ATAGGATGCCACTTTTGTAT+TGG - chr5_2:64943186-64943205 Msa0782160:intron 35.0%
CAAGCTACAATTAGATGATG+AGG - chr5_2:64943292-64943311 Msa0782160:intron 35.0%
AAGCATCACTAATACACATG+TGG + chr5_2:64943319-64943338 None:intergenic 35.0%
CATGTGTATTAGTGATGCTT+AGG - chr5_2:64943319-64943338 Msa0782160:intron 35.0%
AACTACATAAGGCAAGTGAA+TGG + chr5_2:64943466-64943485 None:intergenic 35.0%
GGTTCATGCAGTTAAACATA+TGG - chr5_2:64943529-64943548 Msa0782160:intron 35.0%
GACCATGTTCATTGAAAAGA+GGG - chr5_2:64943653-64943672 Msa0782160:intron 35.0%
CTCTTATAGTTAGTGTGACT+AGG - chr5_2:64944003-64944022 Msa0782160:intron 35.0%
! GGTTCCTTTTTATTCAGACT+CGG - chr5_2:64944203-64944222 Msa0782160:intron 35.0%
GAAACCGAGTCTGAATAAAA+AGG + chr5_2:64944210-64944229 None:intergenic 35.0%
!! TTTTATTCAGACTCGGTTTC+AGG - chr5_2:64944210-64944229 Msa0782160:intron 35.0%
! TTTATTCAGACTCGGTTTCA+GGG - chr5_2:64944211-64944230 Msa0782160:intron 35.0%
GTCAGGAAAATTTGTGATGT+TGG - chr5_2:64944334-64944353 Msa0782160:intron 35.0%
AATCATAATTGCACTTCTCC+AGG - chr5_2:64944414-64944433 Msa0782160:intron 35.0%
TAAACCATTCAAGAAGATCC+GGG + chr5_2:64944462-64944481 None:intergenic 35.0%
ATCTCATACATCAAGGTGAA+GGG + chr5_2:64944769-64944788 None:intergenic 35.0%
AGCTAGCTATATATATTGCG+TGG - chr5_2:64944792-64944811 Msa0782160:intron 35.0%
TAGCTATATATATTGCGTGG+TGG - chr5_2:64944795-64944814 Msa0782160:intron 35.0%
AGCTATATATATTGCGTGGT+GGG - chr5_2:64944796-64944815 Msa0782160:intron 35.0%
GTAAGCACTATGCAACAATA+TGG + chr5_2:64945460-64945479 None:intergenic 35.0%
CTGTCATCCAAACTATGTTA+AGG - chr5_2:64945493-64945512 Msa0782160:intron 35.0%
ATGCACACCTTAACATAGTT+TGG + chr5_2:64945503-64945522 None:intergenic 35.0%
GCAGTAGTGATAATAATGAC+AGG + chr5_2:64945592-64945611 None:intergenic 35.0%
! TCTCCTAAATTTTCAGATGG+CGG - chr5_2:64945764-64945783 Msa0782160:CDS 35.0%
GTGCAAAGTAGCTTTCTTGA+TGG - chr5_2:64933252-64933271 Msa0782160:three_prime_UTR 40.0%
GTACAGTTATAAGTCTGTGC+AGG - chr5_2:64933633-64933652 Msa0782160:three_prime_UTR 40.0%
!! TTTTGAAGACGACGAACCTT+CGG - chr5_2:64933659-64933678 Msa0782160:three_prime_UTR 40.0%
TTGCGTTAAAGTGGTTCCAA+CGG + chr5_2:64933804-64933823 None:intergenic 40.0%
!! GAAATCATCAGCATCGATGT+TGG + chr5_2:64933827-64933846 None:intergenic 40.0%
GCTGATGATTTCCATCTTTC+CGG - chr5_2:64933835-64933854 Msa0782160:three_prime_UTR 40.0%
! GATTGATTCAGTTATGGTGC+CGG + chr5_2:64933857-64933876 None:intergenic 40.0%
CAATCATGGATTCCAACTCA+AGG - chr5_2:64933872-64933891 Msa0782160:three_prime_UTR 40.0%
TGTTGCACTAACATAATCGG+AGG - chr5_2:64934148-64934167 Msa0782160:three_prime_UTR 40.0%
ACATAATCGGAGGATGTATG+AGG - chr5_2:64934158-64934177 Msa0782160:three_prime_UTR 40.0%
GGCTGACCATTTGTATTAGT+TGG - chr5_2:64934179-64934198 Msa0782160:three_prime_UTR 40.0%
! TGGATTGGATGATTCTGTTG+AGG - chr5_2:64934199-64934218 Msa0782160:three_prime_UTR 40.0%
TGGATGATGTCAACAATGTG+AGG - chr5_2:64934454-64934473 Msa0782160:CDS 40.0%
TTTCCACTTCCACACAAGAA+AGG - chr5_2:64934516-64934535 Msa0782160:intron 40.0%
TGGAGAAGCCAACAATAATG+TGG + chr5_2:64934812-64934831 None:intergenic 40.0%
CCATGATATCATACCACAGT+TGG + chr5_2:64934841-64934860 None:intergenic 40.0%
CCAACTGTGGTATGATATCA+TGG - chr5_2:64934838-64934857 Msa0782160:intron 40.0%
ATCATGGTTCAACGTTGTAG+GGG - chr5_2:64934854-64934873 Msa0782160:intron 40.0%
AGAGAGCCAAATAAGATCAG+AGG + chr5_2:64935695-64935714 None:intergenic 40.0%
!! TCAGGTTTTGTGTGAAGATG+TGG - chr5_2:64935854-64935873 Msa0782160:intron 40.0%
! CCAAAATCTGTTGAAAGTGC+AGG + chr5_2:64936252-64936271 None:intergenic 40.0%
! CCTGCACTTTCAACAGATTT+TGG - chr5_2:64936249-64936268 Msa0782160:intron 40.0%
!! AAGGGTTGATAGTGCTTTGA+TGG + chr5_2:64936878-64936897 None:intergenic 40.0%
! TTTTTACCATGTTGTGCCTC+TGG - chr5_2:64936900-64936919 Msa0782160:intron 40.0%
GTGATGATCTACCTCATTGT+AGG - chr5_2:64937130-64937149 Msa0782160:intron 40.0%
ATGATCTACCTCATTGTAGG+TGG - chr5_2:64937133-64937152 Msa0782160:intron 40.0%
!! CTTCAGTTTTGGTCTTCGTT+GGG - chr5_2:64937299-64937318 Msa0782160:intron 40.0%
CGCTCTTCTCATGAAAGAAA+TGG - chr5_2:64938384-64938403 Msa0782160:intron 40.0%
!!! GGTTGGTGGCACTTTTATAT+AGG + chr5_2:64938421-64938440 None:intergenic 40.0%
!! CCTGTAAAAAAATGGGTTGG+TGG + chr5_2:64938435-64938454 None:intergenic 40.0%
!!! CCACCAACCCATTTTTTTAC+AGG - chr5_2:64938432-64938451 Msa0782160:intron 40.0%
GTTGTGTCTCCAATCTTAGT+TGG - chr5_2:64938454-64938473 Msa0782160:intron 40.0%
! CTCTTTAAGGGTGAGAATCT+TGG + chr5_2:64938502-64938521 None:intergenic 40.0%
ACTCTTGCGTCAAATGCAAA+AGG + chr5_2:64938554-64938573 None:intergenic 40.0%
! TGGTGTCAATCTCATTTGTG+GGG - chr5_2:64937918-64937937 Msa0782160:intron 40.0%
TGAGGAAGCCTAAAATGAGT+TGG + chr5_2:64938691-64938710 None:intergenic 40.0%
CAGATGATGTTAGAGGTTCT+TGG + chr5_2:64939408-64939427 None:intergenic 40.0%
! TATGAGTGTGTGTCATTGCA+AGG + chr5_2:64939665-64939684 None:intergenic 40.0%
! TTCAAAGTATCATCAGAGGC+CGG - chr5_2:64939728-64939747 Msa0782160:intron 40.0%
AACTAGACTCTACTGTGATC+CGG + chr5_2:64939750-64939769 None:intergenic 40.0%
TGCTCAACTTTCAACTAGCA+TGG + chr5_2:64940116-64940135 None:intergenic 40.0%
GGAAATGGATCTTTAATCGG+CGG - chr5_2:64940716-64940735 Msa0782160:intron 40.0%
GATCTTTAATCGGCGGTAAA+GGG - chr5_2:64940723-64940742 Msa0782160:intron 40.0%
ACGGAAATGGAACATGTGTA+TGG - chr5_2:64941157-64941176 Msa0782160:intron 40.0%
GGATCTAATATGTAACGTGG+AGG + chr5_2:64942771-64942790 None:intergenic 40.0%
!! GTTGTATATGATGGTGGTTC+GGG + chr5_2:64942928-64942947 None:intergenic 40.0%
TGCAATGCTACAGTAGGTTA+AGG + chr5_2:64943509-64943528 None:intergenic 40.0%
TTAACCTACTGTAGCATTGC+AGG - chr5_2:64943508-64943527 Msa0782160:intron 40.0%
GGACCATGTTCATTGAAAAG+AGG - chr5_2:64943652-64943671 Msa0782160:intron 40.0%
! AGCCCTCTTTTCAATGAACA+TGG + chr5_2:64943658-64943677 None:intergenic 40.0%
! TTTTGTCCTTTTGTCCTTGC+TGG - chr5_2:64943826-64943845 Msa0782160:intron 40.0%
CTGGTTGTGTGGTATCAATA+CGG - chr5_2:64943845-64943864 Msa0782160:intron 40.0%
ACTATGAAAGCAGCTGGTTA+TGG + chr5_2:64943936-64943955 None:intergenic 40.0%
ACATACCTCTTTGTAGACCA+GGG + chr5_2:64944305-64944324 None:intergenic 40.0%
!! AGCAATATGTCAAGTACTGG+AGG + chr5_2:64944380-64944399 None:intergenic 40.0%
CACAGCAATATGTCAAGTAC+TGG + chr5_2:64944383-64944402 None:intergenic 40.0%
! CATCTACTCATGCTTTTGCT+CGG - chr5_2:64944512-64944531 Msa0782160:intron 40.0%
GGAATTCCATGTTTCGTGAT+AGG - chr5_2:64944533-64944552 Msa0782160:intron 40.0%
ATGTCCCTTTCTGTAGTCAA+AGG - chr5_2:64944593-64944612 Msa0782160:intron 40.0%
CATGCCTTTGACTACAGAAA+GGG + chr5_2:64944600-64944619 None:intergenic 40.0%
TCTCATACATCAAGGTGAAG+GGG + chr5_2:64944768-64944787 None:intergenic 40.0%
CATCTCATACATCAAGGTGA+AGG + chr5_2:64944770-64944789 None:intergenic 40.0%
AGCTTGCATCTCATACATCA+AGG + chr5_2:64944776-64944795 None:intergenic 40.0%
! TGCAAGCAATGAGATTTGGT+AGG - chr5_2:64945066-64945085 Msa0782160:CDS 40.0%
GTAAGCACTATGCAGCAATA+TGG + chr5_2:64945261-64945280 None:intergenic 40.0%
ACACCTTCACATAGTTTGGA+TGG + chr5_2:64945300-64945319 None:intergenic 40.0%
ATGCACACCTTCACATAGTT+TGG + chr5_2:64945304-64945323 None:intergenic 40.0%
ACACCTTCACATAGTTTGGA+TGG + chr5_2:64945300-64945319 None:intergenic 40.0%
ATGCACACCTTCACATAGTT+TGG + chr5_2:64945304-64945323 None:intergenic 40.0%
ATCTGCCATTATGCAGCAAA+AGG + chr5_2:64945396-64945415 None:intergenic 40.0%
TAGTTTGGATGACAGCTTCA+AGG + chr5_2:64945488-64945507 None:intergenic 40.0%
ACACCTTCACATAGTTTGGA+TGG + chr5_2:64945300-64945319 None:intergenic 40.0%
ATGCACACCTTCACATAGTT+TGG + chr5_2:64945304-64945323 None:intergenic 40.0%
ATGCCGCCATCTGAAAATTT+AGG + chr5_2:64945770-64945789 None:intergenic 40.0%
TTGCAGTGAAGATGCTGCAA+AGG - chr5_2:64933600-64933619 Msa0782160:three_prime_UTR 45.0%
AGCTCGGGCACGAATTATAT+CGG + chr5_2:64933691-64933710 None:intergenic 45.0%
ACGGTTAAACCGCATCTTAG+AGG + chr5_2:64933785-64933804 None:intergenic 45.0%
CTAAGATGCGGTTTAACCGT+TGG - chr5_2:64933785-64933804 Msa0782160:three_prime_UTR 45.0%
! CGATGTTGGTTGCGTTAAAG+TGG + chr5_2:64933813-64933832 None:intergenic 45.0%
AATAGGGGCTGGGAATCAAA+AGG + chr5_2:64934085-64934104 None:intergenic 45.0%
CAACCTTTCTTGTGTGGAAG+TGG + chr5_2:64934522-64934541 None:intergenic 45.0%
! GTAGTCTCATTTTCACCGTG+TGG - chr5_2:64934762-64934781 Msa0782160:intron 45.0%
GGATCAACTCATCGGAGAAA+AGG + chr5_2:64934791-64934810 None:intergenic 45.0%
TTCTCCAGAAAGTCCAACTG+TGG - chr5_2:64934825-64934844 Msa0782160:intron 45.0%
CATACCACAGTTGGACTTTC+TGG + chr5_2:64934832-64934851 None:intergenic 45.0%
ACGGAGAGTCTGACACTTAA+TGG - chr5_2:64934909-64934928 Msa0782160:intron 45.0%
! TGTCTCAAGGCATTACAGCA+TGG + chr5_2:64935017-64935036 None:intergenic 45.0%
GCTGTAATGCCTTGAGACAT+TGG - chr5_2:64935018-64935037 Msa0782160:intron 45.0%
TGCCTTGAGACATTGGATGA+AGG - chr5_2:64935025-64935044 Msa0782160:intron 45.0%
CACCTTCATCCAATGTCTCA+AGG + chr5_2:64935030-64935049 None:intergenic 45.0%
CCACCAAAGACCAAAAGAGA+AGG + chr5_2:64936085-64936104 None:intergenic 45.0%
!! CCTTCTCTTTTGGTCTTTGG+TGG - chr5_2:64936082-64936101 Msa0782160:intron 45.0%
CCACGTGGCATGAAATGATT+GGG + chr5_2:64936433-64936452 None:intergenic 45.0%
!! ATATTGGTATTGGTGCCACG+TGG + chr5_2:64936448-64936467 None:intergenic 45.0%
! GATAGTGCTTTGATGGACGT+AGG + chr5_2:64936871-64936890 None:intergenic 45.0%
TGCCTCTGGTTGACCTTATT+TGG - chr5_2:64936914-64936933 Msa0782160:intron 45.0%
AGCCAAATAAGGTCAACCAG+AGG + chr5_2:64936919-64936938 None:intergenic 45.0%
GTCTGGTGCATAGCCAAATA+AGG + chr5_2:64936930-64936949 None:intergenic 45.0%
CGCAAGAGTCTCACACTTAT+GGG - chr5_2:64936963-64936982 Msa0782160:intron 45.0%
!!! TAAGGTTTTGGGCGATGATG+TGG - chr5_2:64937084-64937103 Msa0782160:intron 45.0%
TTTCATGGCCACCTACAATG+AGG + chr5_2:64937144-64937163 None:intergenic 45.0%
CCAACGAAGACCAAAACTGA+AGG + chr5_2:64937301-64937320 None:intergenic 45.0%
!! CCTTCAGTTTTGGTCTTCGT+TGG - chr5_2:64937298-64937317 Msa0782160:intron 45.0%
GCACAACATGGTCAAAAAGG+TGG + chr5_2:64937670-64937689 None:intergenic 45.0%
GAGGCACAACATGGTCAAAA+AGG + chr5_2:64937673-64937692 None:intergenic 45.0%
GGTCAAATTGAGGCACAACA+TGG + chr5_2:64937682-64937701 None:intergenic 45.0%
CCTCCAAAGACCAAAAGTGA+AGG + chr5_2:64938128-64938147 None:intergenic 45.0%
GGATCTTTAATCGGCGGTAA+AGG - chr5_2:64940722-64940741 Msa0782160:intron 45.0%
!! TGATGGTGGTTCGGGTAAAA+AGG + chr5_2:64942920-64942939 None:intergenic 45.0%
TGAACCTGCAATGCTACAGT+AGG + chr5_2:64943515-64943534 None:intergenic 45.0%
ACACAACCAGCAAGGACAAA+AGG + chr5_2:64943835-64943854 None:intergenic 45.0%
!! TTTTGTCCTTGCTGGTTGTG+TGG - chr5_2:64943834-64943853 Msa0782160:intron 45.0%
TTGATACCACACAACCAGCA+AGG + chr5_2:64943843-64943862 None:intergenic 45.0%
GGAAAGTAAGTCTAACACCC+TGG - chr5_2:64944285-64944304 Msa0782160:intron 45.0%
TAACACCCTGGTCTACAAAG+AGG - chr5_2:64944297-64944316 Msa0782160:intron 45.0%
CACATACCTCTTTGTAGACC+AGG + chr5_2:64944306-64944325 None:intergenic 45.0%
! AGGTATGTGCTGTTCTAGTC+AGG - chr5_2:64944317-64944336 Msa0782160:intron 45.0%
GCATGCCTTTGACTACAGAA+AGG + chr5_2:64944601-64944620 None:intergenic 45.0%
! TGTAGTCAAAGGCATGCCTA+AGG - chr5_2:64944604-64944623 Msa0782160:intron 45.0%
TGAACTGAGATCGTAGATCG+CGG - chr5_2:64944630-64944649 Msa0782160:intron 45.0%
GATAGATATGGGCACCTATG+TGG - chr5_2:64945210-64945229 Msa0782160:intron 45.0%
TAGTTTGGATGGCAGCTTCA+AGG + chr5_2:64945289-64945308 None:intergenic 45.0%
CTGCCATCCAAACTATGTGA+AGG - chr5_2:64945294-64945313 Msa0782160:intron 45.0%
TAGTTTGGATGGCAGCTTCA+AGG + chr5_2:64945289-64945308 None:intergenic 45.0%
CTGCCATCCAAACTATGTGA+AGG - chr5_2:64945294-64945313 Msa0782160:intron 45.0%
! CTATGTGAAGGTGTGCATAG+TGG - chr5_2:64945358-64945377 Msa0782160:intron 45.0%
! GGACTCCTTTTGCTGCATAA+TGG - chr5_2:64945388-64945407 Msa0782160:intron 45.0%
TTGCTGCATAATGGCAGATG+TGG - chr5_2:64945397-64945416 Msa0782160:intron 45.0%
TGCTGCATAATGGCAGATGT+GGG - chr5_2:64945398-64945417 Msa0782160:intron 45.0%
TAGTTTGGATGGCAGCTTCA+AGG + chr5_2:64945289-64945308 None:intergenic 45.0%
CTGCCATCCAAACTATGTGA+AGG - chr5_2:64945294-64945313 Msa0782160:intron 45.0%
!!! GAGCATTTTTTTGCGGTGCA+TGG - chr5_2:64945675-64945694 Msa0782160:intron 45.0%
!!! TTTTTAATTGATTATTTTTT+TGG - chr5_2:64936656-64936675 Msa0782160:intron 5.0%
!!! TTTTAATTGATTATTTTTTT+GGG - chr5_2:64936657-64936676 Msa0782160:intron 5.0%
GCTCGGGCACGAATTATATC+GGG + chr5_2:64933690-64933709 None:intergenic 50.0%
TTCGCCAACCAAACAGAGCT+CGG + chr5_2:64933707-64933726 None:intergenic 50.0%
! CAGTTATGGTGCCGGAAAGA+TGG + chr5_2:64933849-64933868 None:intergenic 50.0%
TCGGAGAAAAGGCAACCACA+CGG + chr5_2:64934780-64934799 None:intergenic 50.0%
!! TAGGTGGTGGATCACGAACA+CGG - chr5_2:64934890-64934909 Msa0782160:intron 50.0%
!! TGGTATTGGTCCCTGCACTT+TGG - chr5_2:64936389-64936408 Msa0782160:intron 50.0%
CCCAATCATTTCATGCCACG+TGG - chr5_2:64936430-64936449 Msa0782160:intron 50.0%
GCCACGTGGCATGAAATGAT+TGG + chr5_2:64936434-64936453 None:intergenic 50.0%
ACTCTTGCGCATATTGCGCA+TGG + chr5_2:64936952-64936971 None:intergenic 50.0%
GCGCAAGAGTCTCACACTTA+TGG - chr5_2:64936962-64936981 Msa0782160:intron 50.0%
AAGGACACAGAGTCGCACAT+TGG - chr5_2:64937732-64937751 Msa0782160:intron 50.0%
AGGACACAGAGTCGCACATT+GGG - chr5_2:64937733-64937752 Msa0782160:intron 50.0%
GAAAGCAGCTGGTTATGGCA+GGG + chr5_2:64943931-64943950 None:intergenic 50.0%
TGAAAGCAGCTGGTTATGGC+AGG + chr5_2:64943932-64943951 None:intergenic 50.0%
CGGTTCACTATGAAAGCAGC+TGG + chr5_2:64943942-64943961 None:intergenic 50.0%
TTTGGTAGAGTGCAGCAACC+TGG + chr5_2:64944435-64944454 None:intergenic 50.0%
TGCACTCTACCAAAACCACC+CGG - chr5_2:64944441-64944460 Msa0782160:intron 50.0%
! CAAGAAGATCCGGGTGGTTT+TGG + chr5_2:64944453-64944472 None:intergenic 50.0%
ACCACCCGGATCTTCTTGAA+TGG - chr5_2:64944455-64944474 Msa0782160:intron 50.0%
ACCATTCAAGAAGATCCGGG+TGG + chr5_2:64944459-64944478 None:intergenic 50.0%
ATGAGTAGATGCAGCTGTGG+TGG + chr5_2:64944503-64944522 None:intergenic 50.0%
AGCATGAGTAGATGCAGCTG+TGG + chr5_2:64944506-64944525 None:intergenic 50.0%
CTCGCTCCTATCACGAAACA+TGG + chr5_2:64944542-64944561 None:intergenic 50.0%
GGAGCGAGTGCATGTTGAAA+AGG - chr5_2:64944554-64944573 Msa0782160:intron 50.0%
CGATCTCAGTTCAGCTCCTT+AGG + chr5_2:64944623-64944642 None:intergenic 50.0%
GGTGTGCATAGTGGCAGATA+TGG - chr5_2:64945367-64945386 Msa0782160:intron 50.0%
ATTCGTGCCCGAGCTCTGTT+TGG - chr5_2:64933696-64933715 Msa0782160:three_prime_UTR 55.0%
TCGCCAACCAAACAGAGCTC+GGG + chr5_2:64933706-64933725 None:intergenic 55.0%
CGCTTTCCTTGAGCTAGCAG+CGG - chr5_2:64934238-64934257 Msa0782160:three_prime_UTR 55.0%
! GGTTGGTGTGTTGCTGGAGA+CGG - chr5_2:64934264-64934283 Msa0782160:three_prime_UTR 55.0%
GCTGGAGACGGTGCAAATGA+AGG - chr5_2:64934276-64934295 Msa0782160:three_prime_UTR 55.0%
ATGGAAACCCGTGCCAAGCA+CGG - chr5_2:64934598-64934617 Msa0782160:intron 55.0%
ATTCTAGCCCGTGCTTGGCA+CGG + chr5_2:64934609-64934628 None:intergenic 55.0%
ACGGAATTCTAGCCCGTGCT+TGG + chr5_2:64934614-64934633 None:intergenic 55.0%
GGTTCAACGTTGTAGGGGAG+CGG - chr5_2:64934859-64934878 Msa0782160:intron 55.0%
GTTCAACGTTGTAGGGGAGC+GGG - chr5_2:64934860-64934879 Msa0782160:intron 55.0%
! GGTCAACCAGAGGCACAACA+TGG + chr5_2:64936909-64936928 None:intergenic 55.0%
TGCGCATATTGCGCATGGTC+TGG + chr5_2:64936947-64936966 None:intergenic 55.0%
GGACACAGAGTCGCACATTG+GGG - chr5_2:64937734-64937753 Msa0782160:intron 55.0%
GACACAGAGTCGCACATTGG+GGG - chr5_2:64937735-64937754 Msa0782160:intron 55.0%
ACACAGAGTCGCACATTGGG+GGG - chr5_2:64937736-64937755 Msa0782160:intron 55.0%
GGCAGATGTGGGCACTTATG+TGG - chr5_2:64945409-64945428 Msa0782160:intron 55.0%
GTGCCCGAGCTCTGTTTGGT+TGG - chr5_2:64933700-64933719 Msa0782160:three_prime_UTR 60.0%
TCCTTGAGCTAGCAGCGGCA+AGG - chr5_2:64934243-64934262 Msa0782160:three_prime_UTR 60.0%
ACCTTGCCGCTGCTAGCTCA+AGG + chr5_2:64934247-64934266 None:intergenic 60.0%
TGAGCTAGCAGCGGCAAGGT+TGG - chr5_2:64934247-64934266 Msa0782160:three_prime_UTR 60.0%
!! CGGCAAGGTTGGTGTGTTGC+TGG - chr5_2:64934258-64934277 Msa0782160:three_prime_UTR 60.0%
TGGAAACCCGTGCCAAGCAC+GGG - chr5_2:64934599-64934618 Msa0782160:intron 60.0%
TTCTAGCCCGTGCTTGGCAC+GGG + chr5_2:64934608-64934627 None:intergenic 60.0%
!! TAGGGGAGCGGGAGTGTTCT+AGG - chr5_2:64934871-64934890 Msa0782160:intron 60.0%
!! AGCGGGAGTGTTCTAGGTGG+TGG - chr5_2:64934877-64934896 Msa0782160:intron 60.0%
TCGCACATTGGGGGGAGAGA+GGG - chr5_2:64937744-64937763 Msa0782160:intron 60.0%
GATGCAGCTGTGGTGGCTTC+TGG + chr5_2:64944496-64944515 None:intergenic 60.0%
!! GGGAGCGGGAGTGTTCTAGG+TGG - chr5_2:64934874-64934893 Msa0782160:intron 65.0%
GTCGCACATTGGGGGGAGAG+AGG - chr5_2:64937743-64937762 Msa0782160:intron 65.0%
CGCACATTGGGGGGAGAGAG+GGG - chr5_2:64937745-64937764 Msa0782160:intron 65.0%
GCACATTGGGGGGAGAGAGG+GGG - chr5_2:64937746-64937765 Msa0782160:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 64933148 64945806 64933148 ID=Msa0782160;Name=Msa0782160
chr5_2 mRNA 64933148 64945806 64933148 ID=Msa0782160-mRNA-1;Parent=Msa0782160;Name=Msa0782160-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0.33|0.28|0.42|0.83|0.71|7|1130|205
chr5_2 exon 64933148 64933387 64933148 ID=Msa0782160-mRNA-1:exon:19493;Parent=Msa0782160-mRNA-1
chr5_2 exon 64933440 64934518 64933440 ID=Msa0782160-mRNA-1:exon:19492;Parent=Msa0782160-mRNA-1
chr5_2 exon 64934636 64934734 64934636 ID=Msa0782160-mRNA-1:exon:19491;Parent=Msa0782160-mRNA-1
chr5_2 exon 64944657 64944699 64944657 ID=Msa0782160-mRNA-1:exon:19490;Parent=Msa0782160-mRNA-1
chr5_2 exon 64945061 64945215 64945061 ID=Msa0782160-mRNA-1:exon:19489;Parent=Msa0782160-mRNA-1
chr5_2 exon 64945300 64945348 64945300 ID=Msa0782160-mRNA-1:exon:19488;Parent=Msa0782160-mRNA-1
chr5_2 exon 64945724 64945806 64945724 ID=Msa0782160-mRNA-1:exon:19487;Parent=Msa0782160-mRNA-1
chr5_2 CDS 64945724 64945806 64945724 ID=Msa0782160-mRNA-1:cds;Parent=Msa0782160-mRNA-1
chr5_2 CDS 64945300 64945348 64945300 ID=Msa0782160-mRNA-1:cds;Parent=Msa0782160-mRNA-1
chr5_2 CDS 64945061 64945215 64945061 ID=Msa0782160-mRNA-1:cds;Parent=Msa0782160-mRNA-1
chr5_2 CDS 64944657 64944699 64944657 ID=Msa0782160-mRNA-1:cds;Parent=Msa0782160-mRNA-1
chr5_2 CDS 64934636 64934734 64934636 ID=Msa0782160-mRNA-1:cds;Parent=Msa0782160-mRNA-1
chr5_2 CDS 64934330 64934518 64934330 ID=Msa0782160-mRNA-1:cds;Parent=Msa0782160-mRNA-1
chr5_2 three_prime_UTR 64933440 64934329 64933440 ID=Msa0782160-mRNA-1:three_prime_utr;Parent=Msa0782160-mRNA-1
chr5_2 three_prime_UTR 64933148 64933387 64933148 ID=Msa0782160-mRNA-1:three_prime_utr;Parent=Msa0782160-mRNA-1
Gene Sequence

>Msa0782160

ATGAATTTATATGATATCAAATTTGATTGCTTTATGGTGTTGTTTAAGTGCAGTGAAAGTGAGTATGAGAGAGATATTCCATGTGAAGATGCTGCAAAGGATGCTTTGTTGTACAGTTATAAGTCTGTGCAGTTTCATGATGCAGGAATAACCACAACTGCAACTAAAAACATTGCCTCTAAGATGCGGTTTAACCGTTGGAACCACTTTAACGCAACCAACATCGATGCTGATGATTTCCATCTTTCCGGCACCATAACTGAATCAATCATGGATTCCAACTCAAGCAGCGGCAAGGTTGGTGTGTTGCTGGAGACGGTGCAAATGAAGACTCGGTTTCAGGGCGATGTTCATGTTTACAAGTCATTTCTGGACATATTGAATACATACAGAAAGGAAAGTAAGTCTAACACCCTGGTCTACAAAGAGGTTGCTGCACTCTACCAAAACCACCCGGATCTTCTTGAATGGTTTATTCATTTTCATCCAGAAGCCACCACAGCTGCATCTACTCATGCTTTTGCTCGGAATTCCATGTTTCGTGATAGGAGCGAGTGCATGTTGAAAAGGTTTGTCTTCAGTTCTTATGTCCCTTTCTGTAGTCAAAGGCATGCCTAA
Protein sequence

>Msa0782160

MNLYDIKFDCFMVLFKCSESEYERDIPCEDAAKDALLYSYKSVQFHDAGITTTATKNIASKMRFNRWNHFNATNIDADDFHLSGTITESIMDSNSSSGKVGVLLETVQMKTRFQGDVHVYKSFLDILNTYRKESKSNTLVYKEVAALYQNHPDLLEWFIHFHPEATTAASTHAFARNSMFRDRSECMLKRFVFSSYVPFCSQRHA*