Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0782940 | PNX75333.1 | 88.056 | 360 | 12 | 2 | 180 | 509 | 334 | 692 | 0.0 | 639 |
| Msa0782940 | PNX75333.1 | 98.496 | 133 | 2 | 0 | 47 | 179 | 1 | 133 | 2.33e-78 | 270 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0782940 | sp|Q9SZL7|FRS9_ARATH | 32.342 | 269 | 145 | 7 | 183 | 418 | 191 | 455 | 5.49e-36 | 144 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0782940 | A0A2K3L9Y4 | 88.056 | 360 | 12 | 2 | 180 | 509 | 334 | 692 | 0.0 | 639 |
| Msa0782940 | A0A2K3L9Y4 | 98.496 | 133 | 2 | 0 | 47 | 179 | 1 | 133 | 1.11e-78 | 270 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0782940 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0782940 | MtrunA17_Chr2g0289081 | 78.000 | 100 | 21 | 1 | 1 | 99 | 21 | 120 | 2.50e-46 | 158 |
| Msa0782940 | MtrunA17_Chr5g0448511 | 29.749 | 279 | 165 | 3 | 186 | 433 | 192 | 470 | 3.31e-41 | 155 |
| Msa0782940 | MtrunA17_Chr1g0202341 | 34.602 | 289 | 143 | 6 | 180 | 429 | 398 | 679 | 3.22e-40 | 154 |
| Msa0782940 | MtrunA17_Chr1g0202341 | 31.707 | 164 | 94 | 8 | 26 | 178 | 35 | 191 | 5.53e-12 | 68.6 |
| Msa0782940 | MtrunA17_Chr5g0448761 | 31.985 | 272 | 153 | 3 | 186 | 425 | 420 | 691 | 2.02e-39 | 152 |
| Msa0782940 | MtrunA17_Chr5g0448761 | 34.395 | 157 | 91 | 4 | 37 | 181 | 53 | 209 | 6.25e-17 | 84.3 |
| Msa0782940 | MtrunA17_Chr2g0296781 | 29.022 | 317 | 174 | 7 | 186 | 466 | 345 | 646 | 8.25e-32 | 130 |
| Msa0782940 | MtrunA17_Chr6g0477261 | 27.358 | 318 | 180 | 5 | 185 | 466 | 233 | 535 | 1.32e-31 | 129 |
| Msa0782940 | MtrunA17_Chr5g0440451 | 30.686 | 277 | 156 | 5 | 180 | 423 | 392 | 665 | 4.06e-31 | 128 |
| Msa0782940 | MtrunA17_Chr5g0441581 | 32.579 | 221 | 114 | 3 | 183 | 368 | 370 | 590 | 5.72e-31 | 127 |
| Msa0782940 | MtrunA17_Chr3g0080351 | 31.707 | 205 | 109 | 3 | 186 | 360 | 419 | 622 | 5.53e-30 | 124 |
| Msa0782940 | MtrunA17_Chr3g0118611 | 27.193 | 342 | 209 | 8 | 180 | 489 | 292 | 625 | 3.68e-29 | 122 |
| Msa0782940 | MtrunA17_Chr1g0207551 | 29.358 | 218 | 119 | 4 | 177 | 360 | 372 | 588 | 8.22e-29 | 120 |
| Msa0782940 | MtrunA17_Chr2g0329031 | 25.281 | 356 | 217 | 10 | 159 | 481 | 336 | 675 | 1.01e-26 | 114 |
| Msa0782940 | MtrunA17_Chr3g0082121 | 28.682 | 258 | 155 | 4 | 186 | 415 | 389 | 645 | 4.64e-26 | 112 |
| Msa0782940 | MtrunA17_Chr3g0082121 | 28.902 | 173 | 111 | 4 | 18 | 182 | 17 | 185 | 7.80e-11 | 64.7 |
| Msa0782940 | MtrunA17_Chr2g0287061 | 33.083 | 266 | 138 | 8 | 186 | 418 | 498 | 756 | 3.87e-25 | 109 |
| Msa0782940 | MtrunA17_Chr1g0196541 | 51.685 | 89 | 43 | 0 | 184 | 272 | 343 | 431 | 4.97e-24 | 106 |
| Msa0782940 | MtrunA17_Chr1g0198761 | 25.824 | 364 | 206 | 12 | 183 | 515 | 408 | 738 | 6.80e-24 | 105 |
| Msa0782940 | MtrunA17_Chr1g0198761 | 34.503 | 171 | 88 | 7 | 3 | 153 | 7 | 173 | 1.80e-13 | 73.2 |
| Msa0782940 | MtrunA17_Chr8g0363841 | 28.444 | 225 | 127 | 3 | 179 | 371 | 363 | 585 | 1.98e-23 | 104 |
| Msa0782940 | MtrunA17_Chr2g0291581 | 28.358 | 268 | 153 | 4 | 186 | 415 | 409 | 675 | 1.53e-21 | 98.6 |
| Msa0782940 | MtrunA17_Chr1g0203721 | 24.759 | 311 | 177 | 11 | 186 | 455 | 419 | 713 | 1.16e-18 | 89.7 |
| Msa0782940 | MtrunA17_Chr2g0294841 | 28.019 | 207 | 115 | 5 | 180 | 356 | 401 | 603 | 1.81e-17 | 85.9 |
| Msa0782940 | MtrunA17_Chr6g0458391 | 26.667 | 240 | 140 | 6 | 156 | 360 | 526 | 764 | 1.60e-16 | 82.8 |
| Msa0782940 | MtrunA17_Chr7g0258861 | 34.328 | 134 | 80 | 3 | 43 | 169 | 10 | 142 | 1.69e-16 | 80.5 |
| Msa0782940 | MtrunA17_Chr2g0308841 | 22.488 | 209 | 131 | 1 | 183 | 360 | 18 | 226 | 2.21e-13 | 70.5 |
| Msa0782940 | MtrunA17_Chr1g0203051 | 23.618 | 199 | 121 | 3 | 183 | 350 | 425 | 623 | 3.23e-13 | 72.4 |
| Msa0782940 | MtrunA17_Chr2g0290391 | 29.213 | 178 | 116 | 4 | 12 | 179 | 19 | 196 | 1.10e-12 | 70.5 |
| Msa0782940 | MtrunA17_Chr2g0324011 | 31.206 | 141 | 88 | 3 | 36 | 169 | 3 | 141 | 6.84e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0782940 | AT4G38170.1 | 32.342 | 269 | 145 | 7 | 183 | 418 | 191 | 455 | 5.58e-37 | 144 |
| Msa0782940 | AT4G38180.1 | 32.258 | 217 | 117 | 2 | 180 | 366 | 423 | 639 | 1.15e-35 | 142 |
| Msa0782940 | AT4G38180.1 | 32.927 | 164 | 98 | 4 | 29 | 181 | 59 | 221 | 1.13e-15 | 80.5 |
| Msa0782940 | AT4G15090.1 | 26.230 | 366 | 216 | 7 | 177 | 504 | 392 | 741 | 1.13e-32 | 133 |
| Msa0782940 | AT4G15090.5 | 26.230 | 366 | 216 | 7 | 177 | 504 | 392 | 741 | 1.13e-32 | 133 |
| Msa0782940 | AT4G15090.3 | 26.230 | 366 | 216 | 7 | 177 | 504 | 392 | 741 | 1.13e-32 | 133 |
| Msa0782940 | AT4G15090.2 | 26.230 | 366 | 216 | 7 | 177 | 504 | 392 | 741 | 1.13e-32 | 133 |
| Msa0782940 | AT4G15090.4 | 26.230 | 366 | 216 | 7 | 177 | 504 | 392 | 741 | 1.13e-32 | 133 |
| Msa0782940 | AT2G27110.2 | 27.148 | 291 | 172 | 6 | 178 | 435 | 365 | 648 | 6.07e-30 | 125 |
| Msa0782940 | AT2G27110.1 | 27.148 | 291 | 172 | 6 | 178 | 435 | 365 | 648 | 6.07e-30 | 125 |
| Msa0782940 | AT2G27110.3 | 27.148 | 291 | 172 | 6 | 178 | 435 | 220 | 503 | 9.65e-30 | 124 |
| Msa0782940 | AT3G22170.2 | 29.796 | 245 | 131 | 5 | 185 | 393 | 413 | 652 | 5.47e-28 | 119 |
| Msa0782940 | AT3G22170.1 | 29.796 | 245 | 131 | 5 | 185 | 393 | 413 | 652 | 5.47e-28 | 119 |
| Msa0782940 | AT1G76320.2 | 29.817 | 218 | 116 | 5 | 177 | 360 | 329 | 543 | 6.43e-28 | 118 |
| Msa0782940 | AT1G76320.1 | 29.817 | 218 | 116 | 5 | 177 | 360 | 329 | 543 | 6.46e-28 | 118 |
| Msa0782940 | AT1G76320.4 | 29.817 | 218 | 116 | 5 | 177 | 360 | 329 | 543 | 6.46e-28 | 118 |
| Msa0782940 | AT1G76320.3 | 29.817 | 218 | 116 | 5 | 177 | 360 | 329 | 543 | 1.09e-27 | 117 |
| Msa0782940 | AT3G06250.2 | 28.137 | 263 | 154 | 4 | 186 | 418 | 502 | 759 | 6.03e-27 | 115 |
| Msa0782940 | AT3G06250.1 | 28.137 | 263 | 154 | 4 | 186 | 418 | 502 | 759 | 6.03e-27 | 115 |
| Msa0782940 | AT3G06250.3 | 28.137 | 263 | 154 | 4 | 186 | 418 | 502 | 759 | 6.03e-27 | 115 |
| Msa0782940 | AT2G32250.6 | 26.277 | 274 | 167 | 4 | 180 | 423 | 343 | 611 | 1.02e-26 | 115 |
| Msa0782940 | AT2G32250.1 | 26.277 | 274 | 167 | 4 | 180 | 423 | 343 | 611 | 1.02e-26 | 115 |
| Msa0782940 | AT2G32250.3 | 26.277 | 274 | 167 | 4 | 180 | 423 | 343 | 611 | 1.02e-26 | 115 |
| Msa0782940 | AT2G32250.2 | 26.277 | 274 | 167 | 4 | 180 | 423 | 343 | 611 | 1.03e-26 | 115 |
| Msa0782940 | AT2G32250.4 | 26.277 | 274 | 167 | 4 | 180 | 423 | 343 | 611 | 1.03e-26 | 115 |
| Msa0782940 | AT2G32250.5 | 26.277 | 274 | 167 | 4 | 180 | 423 | 343 | 611 | 1.24e-26 | 114 |
| Msa0782940 | AT2G32250.8 | 26.277 | 274 | 167 | 4 | 180 | 423 | 302 | 570 | 1.25e-26 | 114 |
| Msa0782940 | AT2G32250.7 | 26.277 | 274 | 167 | 4 | 180 | 423 | 302 | 570 | 1.34e-26 | 114 |
| Msa0782940 | AT4G19990.6 | 26.638 | 229 | 137 | 1 | 180 | 377 | 347 | 575 | 3.96e-26 | 113 |
| Msa0782940 | AT4G19990.2 | 26.638 | 229 | 137 | 1 | 180 | 377 | 347 | 575 | 3.96e-26 | 113 |
| Msa0782940 | AT4G19990.5 | 26.638 | 229 | 137 | 1 | 180 | 377 | 347 | 575 | 4.60e-26 | 112 |
| Msa0782940 | AT4G19990.1 | 26.638 | 229 | 137 | 1 | 180 | 377 | 290 | 518 | 4.89e-26 | 112 |
| Msa0782940 | AT4G19990.3 | 26.638 | 229 | 137 | 1 | 180 | 377 | 347 | 575 | 5.47e-26 | 112 |
| Msa0782940 | AT4G19990.4 | 26.638 | 229 | 137 | 1 | 180 | 377 | 347 | 575 | 5.47e-26 | 112 |
| Msa0782940 | AT4G19990.7 | 26.638 | 229 | 137 | 1 | 180 | 377 | 361 | 589 | 6.16e-26 | 112 |
| Msa0782940 | AT5G18960.2 | 28.137 | 263 | 154 | 4 | 186 | 418 | 526 | 783 | 1.82e-25 | 111 |
| Msa0782940 | AT5G18960.1 | 28.137 | 263 | 154 | 4 | 186 | 418 | 526 | 783 | 1.82e-25 | 111 |
| Msa0782940 | AT1G52520.1 | 25.952 | 289 | 163 | 5 | 183 | 427 | 422 | 703 | 2.44e-20 | 95.1 |
| Msa0782940 | AT1G10240.2 | 28.365 | 208 | 116 | 5 | 180 | 358 | 401 | 604 | 5.50e-16 | 81.6 |
| Msa0782940 | AT1G10240.2 | 28.324 | 173 | 111 | 4 | 20 | 179 | 23 | 195 | 4.61e-13 | 72.4 |
| Msa0782940 | AT1G10240.1 | 28.365 | 208 | 116 | 5 | 180 | 358 | 401 | 604 | 5.50e-16 | 81.6 |
| Msa0782940 | AT1G10240.1 | 28.324 | 173 | 111 | 4 | 20 | 179 | 23 | 195 | 4.61e-13 | 72.4 |
| Msa0782940 | AT5G28530.4 | 28.767 | 146 | 95 | 5 | 43 | 179 | 55 | 200 | 6.56e-11 | 65.5 |
| Msa0782940 | AT5G28530.5 | 28.767 | 146 | 95 | 5 | 43 | 179 | 55 | 200 | 7.00e-11 | 65.1 |
| Msa0782940 | AT5G28530.3 | 28.767 | 146 | 95 | 5 | 43 | 179 | 55 | 200 | 8.18e-11 | 65.1 |
| Msa0782940 | AT5G28530.2 | 28.767 | 146 | 95 | 5 | 43 | 179 | 55 | 200 | 8.18e-11 | 65.1 |
| Msa0782940 | AT5G28530.1 | 28.767 | 146 | 95 | 5 | 43 | 179 | 55 | 200 | 8.35e-11 | 65.1 |
Find 74 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAGTTGCTACAATGTTTC+AGG | 0.177913 | 5_2:-66564285 | Msa0782940:CDS |
| AACTCCAAATCCTTCTTTCT+TGG | 0.222792 | 5_2:+66564613 | None:intergenic |
| TATTTGTCCTATTGTTGATA+TGG | 0.229024 | 5_2:-66564681 | Msa0782940:CDS |
| AAGGAGAATGAATGGCTTAA+AGG | 0.244725 | 5_2:-66563616 | Msa0782940:CDS |
| AAGCAGGGAAGAGAAGTAAA+TGG | 0.304863 | 5_2:-66564448 | Msa0782940:CDS |
| CGCAGATAGGCCACACTCTT+AGG | 0.314469 | 5_2:+66564380 | None:intergenic |
| AATTTATGGGATTGCTATGT+AGG | 0.326606 | 5_2:-66563131 | Msa0782940:CDS |
| TAAGCTGATATCATCTGATT+TGG | 0.331906 | 5_2:-66562893 | Msa0782940:CDS |
| GGGAGTGGATCTCTGATAAT+TGG | 0.364089 | 5_2:+66562751 | None:intergenic |
| TCAATCAAAGAGACTCAAAA+TGG | 0.364695 | 5_2:-66562700 | Msa0782940:CDS |
| TTTGCCAAGAAAGAAGGATT+TGG | 0.365412 | 5_2:-66564617 | Msa0782940:CDS |
| AGAAGAATGGGAACGTATAA+TGG | 0.393483 | 5_2:-66563653 | Msa0782940:CDS |
| ATTCATAGTTTGTGTGGATC+TGG | 0.400009 | 5_2:-66563190 | Msa0782940:CDS |
| AATGGTTGATTATAATTTGA+AGG | 0.401452 | 5_2:-66563635 | Msa0782940:CDS |
| TTCTGCCTTTAGTTTGTGAT+GGG | 0.402300 | 5_2:+66562731 | None:intergenic |
| AGAAGATCTTGCCAAGTTTG+TGG | 0.411702 | 5_2:-66562628 | Msa0782940:CDS |
| TAGAATACGTTGAAGAAGAA+TGG | 0.417398 | 5_2:-66563666 | Msa0782940:CDS |
| CGCTTTAAAATATACATGTC+TGG | 0.419734 | 5_2:+66563066 | None:intergenic |
| CAAAAGCAGTCTAGAGTTAT+CGG | 0.420377 | 5_2:-66562671 | Msa0782940:CDS |
| TTTCTGCCTTTAGTTTGTGA+TGG | 0.422683 | 5_2:+66562730 | None:intergenic |
| AGGAGAATGAATGGCTTAAA+GGG | 0.425174 | 5_2:-66563615 | Msa0782940:CDS |
| TCAAATTCCATATCAACAAT+AGG | 0.427064 | 5_2:+66564674 | None:intergenic |
| ATAATTTGAAGGAGAATGAA+TGG | 0.429066 | 5_2:-66563624 | Msa0782940:CDS |
| AAAGTGCTTCTGTTGAAAAC+AGG | 0.437656 | 5_2:+66563565 | None:intergenic |
| GAAGGTACACATATAGTAAA+GGG | 0.439216 | 5_2:-66564542 | Msa0782940:CDS |
| TCACTTACTGTTTCAAAAGC+AGG | 0.452498 | 5_2:-66564464 | Msa0782940:CDS |
| ATAAACAATGTTCATAATCA+TGG | 0.455589 | 5_2:-66564413 | Msa0782940:CDS |
| ACATCGTTTGCCAAGAAAGA+AGG | 0.463881 | 5_2:-66564623 | Msa0782940:CDS |
| ATAGGACAAATATTAGCTTC+AGG | 0.470032 | 5_2:+66564692 | None:intergenic |
| GTTGAGAAGTTTGATGAAGA+AGG | 0.472036 | 5_2:-66564320 | Msa0782940:CDS |
| AGAATACGTTGAAGAAGAAT+GGG | 0.485870 | 5_2:-66563665 | Msa0782940:CDS |
| GCTGATATCATCTGATTTGG+AGG | 0.486826 | 5_2:-66562890 | Msa0782940:CDS |
| AGGGTCTCAGTATAGATATA+AGG | 0.487060 | 5_2:-66563241 | Msa0782940:CDS |
| AAGGATTTGGAGTTCGTGTT+CGG | 0.488165 | 5_2:-66564604 | Msa0782940:CDS |
| CCTTTAGTTTGTGATGGGAG+TGG | 0.488360 | 5_2:+66562736 | None:intergenic |
| AGCAGGGAAGAGAAGTAAAT+GGG | 0.489503 | 5_2:-66564447 | Msa0782940:CDS |
| TCACAATAAGCGAAGTTGTA+AGG | 0.491266 | 5_2:-66562596 | Msa0782940:CDS |
| TGAAGGTACACATATAGTAA+AGG | 0.494494 | 5_2:-66564543 | Msa0782940:CDS |
| GGTGCTGTGTTTATTGAAGA+TGG | 0.495192 | 5_2:-66563021 | Msa0782940:CDS |
| AATATTAGCTTCAGGCGACT+TGG | 0.496239 | 5_2:+66564700 | None:intergenic |
| GATGAAGAAGGAGTACCTAC+AGG | 0.503271 | 5_2:-66564308 | Msa0782940:CDS |
| GTAAAGGGTGAAAATGAAGA+AGG | 0.507431 | 5_2:-66564527 | Msa0782940:CDS |
| GACCGTGTAGACCACAAACT+TGG | 0.513787 | 5_2:+66562617 | None:intergenic |
| TTTCTTATGAGACCGCAGAT+AGG | 0.520979 | 5_2:+66564367 | None:intergenic |
| AAAAGCAGTCTAGAGTTATC+GGG | 0.533465 | 5_2:-66562670 | Msa0782940:CDS |
| AAAGTTGCTACAATGTTTCA+GGG | 0.533512 | 5_2:-66564284 | Msa0782940:intron |
| AGTTAAATTTGACAAGGCAA+TGG | 0.535325 | 5_2:-66563449 | Msa0782940:CDS |
| TGCTTTACAATCAGTTCTTG+AGG | 0.537334 | 5_2:+66564487 | None:intergenic |
| TGTACGATATAAGAAAATCA+TGG | 0.540635 | 5_2:-66563591 | Msa0782940:CDS |
| CACTTACTGTTTCAAAAGCA+GGG | 0.542698 | 5_2:-66564463 | Msa0782940:CDS |
| AGTTGATGAGTTTCTTGTAG+TGG | 0.544119 | 5_2:+66562987 | None:intergenic |
| ATTGCTATGTAGGCATATCT+TGG | 0.547174 | 5_2:-66563121 | Msa0782940:CDS |
| TAAAGGGTGAAAATGAAGAA+GGG | 0.554329 | 5_2:-66564526 | Msa0782940:CDS |
| TTTCTTGTAGTGGAAGACTC+TGG | 0.555052 | 5_2:+66562997 | None:intergenic |
| ATTGGTTCTGAAGACTCACT+TGG | 0.558105 | 5_2:+66562769 | None:intergenic |
| CAATGTTCATAATCATGGAA+TGG | 0.563943 | 5_2:-66564408 | Msa0782940:CDS |
| CCACTCCCATCACAAACTAA+AGG | 0.565112 | 5_2:-66562736 | Msa0782940:CDS |
| CCTTTGTTTAGTGTTCATGC+CGG | 0.565633 | 5_2:+66563537 | None:intergenic |
| ATTGTAGCAACTTTCCCTGT+AGG | 0.569258 | 5_2:+66564293 | None:intergenic |
| ACACATCATCAACTATCTCA+TGG | 0.575355 | 5_2:+66564753 | None:intergenic |
| TGCCAAGTTTGTGGTCTACA+CGG | 0.581521 | 5_2:-66562619 | Msa0782940:CDS |
| TCAAAGAGACTCAAAATGGA+AGG | 0.586321 | 5_2:-66562696 | Msa0782940:CDS |
| AGACACATTCATAGTTTGTG+TGG | 0.589137 | 5_2:-66563196 | Msa0782940:CDS |
| ATGTTTGTATGCGCTAATGA+AGG | 0.600535 | 5_2:-66564560 | Msa0782940:CDS |
| ATGAAGAAGGAGTACCTACA+GGG | 0.636491 | 5_2:-66564307 | Msa0782940:CDS |
| CTTCATCAAACTTCTCAACG+AGG | 0.637235 | 5_2:+66564324 | None:intergenic |
| CTAAGAGTGTGGCCTATCTG+CGG | 0.648365 | 5_2:-66564379 | Msa0782940:CDS |
| GTACATGGATAATGAGTGTG+TGG | 0.666454 | 5_2:-66564804 | None:intergenic |
| TTGTGTGGATCTGGAGACAA+AGG | 0.667341 | 5_2:-66563181 | Msa0782940:CDS |
| TGGACAAAGGATGCTAACAA+AGG | 0.673725 | 5_2:-66563042 | Msa0782940:CDS |
| AATGGTTAGTCCTAAGAGTG+TGG | 0.677899 | 5_2:-66564390 | Msa0782940:CDS |
| GTCTTCTAAACACTCAACAG+TGG | 0.678815 | 5_2:+66564775 | None:intergenic |
| TATGGAATTTGACTCCATTG+CGG | 0.693460 | 5_2:-66564663 | Msa0782940:CDS |
| CCGGCATGAACACTAAACAA+AGG | 0.702508 | 5_2:-66563537 | Msa0782940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAAAGATTATTCAATTT+AGG | - | chr5_2:66564101-66564120 | Msa0782940:intron | 10.0% |
| !! | TTATAAAGATTATTCAATTT+AGG | - | chr5_2:66564101-66564120 | Msa0782940:intron | 10.0% |
| !! | TTGTATTGCATAAAAAAATT+GGG | + | chr5_2:66563251-66563270 | None:intergenic | 15.0% |
| !! | ATTGTATTGCATAAAAAAAT+TGG | + | chr5_2:66563252-66563271 | None:intergenic | 15.0% |
| !! | ATTAACAAAAGAATCAAAAA+AGG | + | chr5_2:66563890-66563909 | None:intergenic | 15.0% |
| !!! | ATATATACAAGAAACATTTT+TGG | - | chr5_2:66564061-66564080 | Msa0782940:intron | 15.0% |
| !!! | TATATACAAGAAACATTTTT+GGG | - | chr5_2:66564062-66564081 | Msa0782940:intron | 15.0% |
| !! | TTGTATTGCATAAAAAAATT+GGG | + | chr5_2:66563251-66563270 | None:intergenic | 15.0% |
| !! | ATTGTATTGCATAAAAAAAT+TGG | + | chr5_2:66563252-66563271 | None:intergenic | 15.0% |
| !! | ATTAACAAAAGAATCAAAAA+AGG | + | chr5_2:66563890-66563909 | None:intergenic | 15.0% |
| !!! | ATATATACAAGAAACATTTT+TGG | - | chr5_2:66564061-66564080 | Msa0782940:intron | 15.0% |
| !!! | TATATACAAGAAACATTTTT+GGG | - | chr5_2:66564062-66564081 | Msa0782940:intron | 15.0% |
| !! | ATAAACAATGTTCATAATCA+TGG | - | chr5_2:66562972-66562991 | Msa0782940:CDS | 20.0% |
| !! | ATAGAATGATAAATTTCTTC+TGG | - | chr5_2:66563284-66563303 | Msa0782940:intron | 20.0% |
| !! | TAGAATGATAAATTTCTTCT+GGG | - | chr5_2:66563285-66563304 | Msa0782940:intron | 20.0% |
| !!! | CATTTTCAATCTATCTTATT+TGG | - | chr5_2:66563424-66563443 | Msa0782940:CDS | 20.0% |
| !! | AATGGTTGATTATAATTTGA+AGG | - | chr5_2:66563750-66563769 | Msa0782940:intron | 20.0% |
| !!! | TTTTGTAGTTAAATTTGACA+AGG | - | chr5_2:66563930-66563949 | Msa0782940:intron | 20.0% |
| !! | TAAAGATTATTCAATTTAGG+AGG | - | chr5_2:66564104-66564123 | Msa0782940:intron | 20.0% |
| !! | AAAGATTATTCAATTTAGGA+GGG | - | chr5_2:66564105-66564124 | Msa0782940:intron | 20.0% |
| !!! | ATACAAAAAAGCTTTGATAA+TGG | - | chr5_2:66564522-66564541 | Msa0782940:CDS | 20.0% |
| !! | ATAAACAATGTTCATAATCA+TGG | - | chr5_2:66562972-66562991 | Msa0782940:CDS | 20.0% |
| !! | ATAGAATGATAAATTTCTTC+TGG | - | chr5_2:66563284-66563303 | Msa0782940:intron | 20.0% |
| !! | TAGAATGATAAATTTCTTCT+GGG | - | chr5_2:66563285-66563304 | Msa0782940:intron | 20.0% |
| !!! | CATTTTCAATCTATCTTATT+TGG | - | chr5_2:66563424-66563443 | Msa0782940:CDS | 20.0% |
| !! | AATGGTTGATTATAATTTGA+AGG | - | chr5_2:66563750-66563769 | Msa0782940:intron | 20.0% |
| !!! | TTTTGTAGTTAAATTTGACA+AGG | - | chr5_2:66563930-66563949 | Msa0782940:intron | 20.0% |
| !! | TAAAGATTATTCAATTTAGG+AGG | - | chr5_2:66564104-66564123 | Msa0782940:intron | 20.0% |
| !! | AAAGATTATTCAATTTAGGA+GGG | - | chr5_2:66564105-66564124 | Msa0782940:intron | 20.0% |
| !!! | ATACAAAAAAGCTTTGATAA+TGG | - | chr5_2:66564522-66564541 | Msa0782940:CDS | 20.0% |
| ! | TATTTGTCCTATTGTTGATA+TGG | - | chr5_2:66562704-66562723 | Msa0782940:CDS | 25.0% |
| ! | TCAAATTCCATATCAACAAT+AGG | + | chr5_2:66562714-66562733 | None:intergenic | 25.0% |
| !!! | AAGATAATGCTTTTTCTAGT+CGG | - | chr5_2:66563126-66563145 | Msa0782940:CDS | 25.0% |
| !!! | TTCTTCTGAAATTTCTAAGA+TGG | + | chr5_2:66563163-66563182 | None:intergenic | 25.0% |
| !!! | AGATTGGCATATCAATTTTT+TGG | - | chr5_2:66563322-66563341 | Msa0782940:intron | 25.0% |
| ! | TTGAAAATGATGATTCAATC+CGG | + | chr5_2:66563413-66563432 | None:intergenic | 25.0% |
| ! | AATAATAACAGATCAAGACT+TGG | - | chr5_2:66563537-66563556 | Msa0782940:CDS | 25.0% |
| !! | TGAATTTTTGTGGTATATGT+GGG | + | chr5_2:66563653-66563672 | None:intergenic | 25.0% |
| !! | TTGAATTTTTGTGGTATATG+TGG | + | chr5_2:66563654-66563673 | None:intergenic | 25.0% |
| ! | ATAATTTGAAGGAGAATGAA+TGG | - | chr5_2:66563761-66563780 | Msa0782940:intron | 25.0% |
| ! | TGTACGATATAAGAAAATCA+TGG | - | chr5_2:66563794-66563813 | Msa0782940:intron | 25.0% |
| ! | AGTTGTTAAGTCAAAAATTG+AGG | - | chr5_2:66564020-66564039 | Msa0782940:intron | 25.0% |
| !!! | ACATGTATATTTTAAAGCGT+TGG | - | chr5_2:66564323-66564342 | Msa0782940:CDS | 25.0% |
| ! | TATTTGTCCTATTGTTGATA+TGG | - | chr5_2:66562704-66562723 | Msa0782940:CDS | 25.0% |
| ! | TCAAATTCCATATCAACAAT+AGG | + | chr5_2:66562714-66562733 | None:intergenic | 25.0% |
| !!! | AAGATAATGCTTTTTCTAGT+CGG | - | chr5_2:66563126-66563145 | Msa0782940:CDS | 25.0% |
| !!! | TTCTTCTGAAATTTCTAAGA+TGG | + | chr5_2:66563163-66563182 | None:intergenic | 25.0% |
| !!! | AGATTGGCATATCAATTTTT+TGG | - | chr5_2:66563322-66563341 | Msa0782940:intron | 25.0% |
| ! | TTGAAAATGATGATTCAATC+CGG | + | chr5_2:66563413-66563432 | None:intergenic | 25.0% |
| ! | AATAATAACAGATCAAGACT+TGG | - | chr5_2:66563537-66563556 | Msa0782940:CDS | 25.0% |
| !! | TGAATTTTTGTGGTATATGT+GGG | + | chr5_2:66563653-66563672 | None:intergenic | 25.0% |
| !! | TTGAATTTTTGTGGTATATG+TGG | + | chr5_2:66563654-66563673 | None:intergenic | 25.0% |
| ! | ATAATTTGAAGGAGAATGAA+TGG | - | chr5_2:66563761-66563780 | Msa0782940:intron | 25.0% |
| ! | TGTACGATATAAGAAAATCA+TGG | - | chr5_2:66563794-66563813 | Msa0782940:intron | 25.0% |
| ! | AGTTGTTAAGTCAAAAATTG+AGG | - | chr5_2:66564020-66564039 | Msa0782940:intron | 25.0% |
| !!! | ACATGTATATTTTAAAGCGT+TGG | - | chr5_2:66564323-66564342 | Msa0782940:CDS | 25.0% |
| ! | GACTTGGAATTTTCTGAATT+TGG | + | chr5_2:66562672-66562691 | None:intergenic | 30.0% |
| ! | ATAGGACAAATATTAGCTTC+AGG | + | chr5_2:66562696-66562715 | None:intergenic | 30.0% |
| ! | TGAAGGTACACATATAGTAA+AGG | - | chr5_2:66562842-66562861 | Msa0782940:CDS | 30.0% |
| ! | GAAGGTACACATATAGTAAA+GGG | - | chr5_2:66562843-66562862 | Msa0782940:CDS | 30.0% |
| TAAAGGGTGAAAATGAAGAA+GGG | - | chr5_2:66562859-66562878 | Msa0782940:CDS | 30.0% | |
| CAATGTTCATAATCATGGAA+TGG | - | chr5_2:66562977-66562996 | Msa0782940:CDS | 30.0% | |
| AAAGTTGCTACAATGTTTCA+GGG | - | chr5_2:66563101-66563120 | Msa0782940:CDS | 30.0% | |
| !!! | AGATAATGCTTTTTCTAGTC+GGG | - | chr5_2:66563127-66563146 | Msa0782940:CDS | 30.0% |
| AGAAGAAGAAATCTTGATGT+GGG | - | chr5_2:66563176-66563195 | Msa0782940:CDS | 30.0% | |
| AATGATAAATTTCTTCTGGG+TGG | - | chr5_2:66563288-66563307 | Msa0782940:intron | 30.0% | |
| AAATGGCATATCATACTTGT+TGG | + | chr5_2:66563380-66563399 | None:intergenic | 30.0% | |
| TGATCTGTTATTATTGACAC+AGG | + | chr5_2:66563532-66563551 | None:intergenic | 30.0% | |
| TTATGTGCCATAAACATAAC+CGG | + | chr5_2:66563606-66563625 | None:intergenic | 30.0% | |
| ! | GCTTGAAAGTTGAATTTTTG+TGG | + | chr5_2:66563663-66563682 | None:intergenic | 30.0% |
| TCTTCAACGTATTCTATAGA+TGG | + | chr5_2:66563715-66563734 | None:intergenic | 30.0% | |
| TAGAATACGTTGAAGAAGAA+TGG | - | chr5_2:66563719-66563738 | Msa0782940:intron | 30.0% | |
| AGAATACGTTGAAGAAGAAT+GGG | - | chr5_2:66563720-66563739 | Msa0782940:intron | 30.0% | |
| AGTTAAATTTGACAAGGCAA+TGG | - | chr5_2:66563936-66563955 | Msa0782940:intron | 30.0% | |
| CTATGAAAAACAAAGAAGAG+AGG | - | chr5_2:66563966-66563985 | Msa0782940:intron | 30.0% | |
| AGGGAAAAACTTGAAAAAGA+AGG | - | chr5_2:66564124-66564143 | Msa0782940:intron | 30.0% | |
| GGGAAAAACTTGAAAAAGAA+GGG | - | chr5_2:66564125-66564144 | Msa0782940:intron | 30.0% | |
| !!! | TGCCAGCTTTTTCAATTTAT+GGG | - | chr5_2:66564241-66564260 | Msa0782940:intron | 30.0% |
| ATCCCATAAATTGAAAAAGC+TGG | + | chr5_2:66564246-66564265 | None:intergenic | 30.0% | |
| AATTTATGGGATTGCTATGT+AGG | - | chr5_2:66564254-66564273 | Msa0782940:intron | 30.0% | |
| !! | CGCTTTAAAATATACATGTC+TGG | + | chr5_2:66564322-66564341 | None:intergenic | 30.0% |
| !!! | TATTTTAAAGCGTTGGACAA+AGG | - | chr5_2:66564330-66564349 | Msa0782940:CDS | 30.0% |
| TAAGCTGATATCATCTGATT+TGG | - | chr5_2:66564492-66564511 | Msa0782940:CDS | 30.0% | |
| TCAATCAAAGAGACTCAAAA+TGG | - | chr5_2:66564685-66564704 | Msa0782940:CDS | 30.0% | |
| !! | ATCTTCTTTTGACTGTTGTT+CGG | + | chr5_2:66564744-66564763 | None:intergenic | 30.0% |
| ! | GACTTGGAATTTTCTGAATT+TGG | + | chr5_2:66562672-66562691 | None:intergenic | 30.0% |
| ! | ATAGGACAAATATTAGCTTC+AGG | + | chr5_2:66562696-66562715 | None:intergenic | 30.0% |
| ! | TGAAGGTACACATATAGTAA+AGG | - | chr5_2:66562842-66562861 | Msa0782940:CDS | 30.0% |
| ! | GAAGGTACACATATAGTAAA+GGG | - | chr5_2:66562843-66562862 | Msa0782940:CDS | 30.0% |
| TAAAGGGTGAAAATGAAGAA+GGG | - | chr5_2:66562859-66562878 | Msa0782940:CDS | 30.0% | |
| CAATGTTCATAATCATGGAA+TGG | - | chr5_2:66562977-66562996 | Msa0782940:CDS | 30.0% | |
| AAAGTTGCTACAATGTTTCA+GGG | - | chr5_2:66563101-66563120 | Msa0782940:CDS | 30.0% | |
| !!! | AGATAATGCTTTTTCTAGTC+GGG | - | chr5_2:66563127-66563146 | Msa0782940:CDS | 30.0% |
| AGAAGAAGAAATCTTGATGT+GGG | - | chr5_2:66563176-66563195 | Msa0782940:CDS | 30.0% | |
| AATGATAAATTTCTTCTGGG+TGG | - | chr5_2:66563288-66563307 | Msa0782940:intron | 30.0% | |
| AAATGGCATATCATACTTGT+TGG | + | chr5_2:66563380-66563399 | None:intergenic | 30.0% | |
| TGATCTGTTATTATTGACAC+AGG | + | chr5_2:66563532-66563551 | None:intergenic | 30.0% | |
| TTATGTGCCATAAACATAAC+CGG | + | chr5_2:66563606-66563625 | None:intergenic | 30.0% | |
| ! | GCTTGAAAGTTGAATTTTTG+TGG | + | chr5_2:66563663-66563682 | None:intergenic | 30.0% |
| TCTTCAACGTATTCTATAGA+TGG | + | chr5_2:66563715-66563734 | None:intergenic | 30.0% | |
| TAGAATACGTTGAAGAAGAA+TGG | - | chr5_2:66563719-66563738 | Msa0782940:intron | 30.0% | |
| AGAATACGTTGAAGAAGAAT+GGG | - | chr5_2:66563720-66563739 | Msa0782940:intron | 30.0% | |
| AGTTAAATTTGACAAGGCAA+TGG | - | chr5_2:66563936-66563955 | Msa0782940:intron | 30.0% | |
| CTATGAAAAACAAAGAAGAG+AGG | - | chr5_2:66563966-66563985 | Msa0782940:intron | 30.0% | |
| AGGGAAAAACTTGAAAAAGA+AGG | - | chr5_2:66564124-66564143 | Msa0782940:intron | 30.0% | |
| GGGAAAAACTTGAAAAAGAA+GGG | - | chr5_2:66564125-66564144 | Msa0782940:intron | 30.0% | |
| !!! | TGCCAGCTTTTTCAATTTAT+GGG | - | chr5_2:66564241-66564260 | Msa0782940:intron | 30.0% |
| ATCCCATAAATTGAAAAAGC+TGG | + | chr5_2:66564246-66564265 | None:intergenic | 30.0% | |
| AATTTATGGGATTGCTATGT+AGG | - | chr5_2:66564254-66564273 | Msa0782940:intron | 30.0% | |
| !! | CGCTTTAAAATATACATGTC+TGG | + | chr5_2:66564322-66564341 | None:intergenic | 30.0% |
| !!! | TATTTTAAAGCGTTGGACAA+AGG | - | chr5_2:66564330-66564349 | Msa0782940:CDS | 30.0% |
| TAAGCTGATATCATCTGATT+TGG | - | chr5_2:66564492-66564511 | Msa0782940:CDS | 30.0% | |
| TCAATCAAAGAGACTCAAAA+TGG | - | chr5_2:66564685-66564704 | Msa0782940:CDS | 30.0% | |
| !! | ATCTTCTTTTGACTGTTGTT+CGG | + | chr5_2:66564744-66564763 | None:intergenic | 30.0% |
| ACACATCATCAACTATCTCA+TGG | + | chr5_2:66562635-66562654 | None:intergenic | 35.0% | |
| TATGGAATTTGACTCCATTG+CGG | - | chr5_2:66562722-66562741 | Msa0782940:CDS | 35.0% | |
| ! | GAATTCTTTTACATCCGCAA+TGG | + | chr5_2:66562739-66562758 | None:intergenic | 35.0% |
| TTTGCCAAGAAAGAAGGATT+TGG | - | chr5_2:66562768-66562787 | Msa0782940:CDS | 35.0% | |
| AACTCCAAATCCTTCTTTCT+TGG | + | chr5_2:66562775-66562794 | None:intergenic | 35.0% | |
| ATGTTTGTATGCGCTAATGA+AGG | - | chr5_2:66562825-66562844 | Msa0782940:CDS | 35.0% | |
| GTAAAGGGTGAAAATGAAGA+AGG | - | chr5_2:66562858-66562877 | Msa0782940:CDS | 35.0% | |
| TGCTTTACAATCAGTTCTTG+AGG | + | chr5_2:66562901-66562920 | None:intergenic | 35.0% | |
| TCACTTACTGTTTCAAAAGC+AGG | - | chr5_2:66562921-66562940 | Msa0782940:CDS | 35.0% | |
| CACTTACTGTTTCAAAAGCA+GGG | - | chr5_2:66562922-66562941 | Msa0782940:CDS | 35.0% | |
| GTTGAGAAGTTTGATGAAGA+AGG | - | chr5_2:66563065-66563084 | Msa0782940:CDS | 35.0% | |
| GAAAGTTGCTACAATGTTTC+AGG | - | chr5_2:66563100-66563119 | Msa0782940:CDS | 35.0% | |
| CAGAAGAAGAAATCTTGATG+TGG | - | chr5_2:66563175-66563194 | Msa0782940:CDS | 35.0% | |
| ATAAATTTCTTCTGGGTGGA+TGG | - | chr5_2:66563292-66563311 | Msa0782940:intron | 35.0% | |
| ! | TTGAGTGGTTGTTTAGAACA+TGG | - | chr5_2:66563482-66563501 | Msa0782940:CDS | 35.0% |
| AGAAGAATGGGAACGTATAA+TGG | - | chr5_2:66563732-66563751 | Msa0782940:intron | 35.0% | |
| AAGGAGAATGAATGGCTTAA+AGG | - | chr5_2:66563769-66563788 | Msa0782940:intron | 35.0% | |
| AGGAGAATGAATGGCTTAAA+GGG | - | chr5_2:66563770-66563789 | Msa0782940:intron | 35.0% | |
| ! | AAAGTGCTTCTGTTGAAAAC+AGG | + | chr5_2:66563823-66563842 | None:intergenic | 35.0% |
| !!! | AACAGAAGCACTTTTTTTGC+CGG | - | chr5_2:66563829-66563848 | Msa0782940:intron | 35.0% |
| ! | GAAGAGAGGATTTTGAATCA+AGG | - | chr5_2:66563980-66563999 | Msa0782940:intron | 35.0% |
| AGGGTCTCAGTATAGATATA+AGG | - | chr5_2:66564144-66564163 | Msa0782940:intron | 35.0% | |
| ! | AGACACATTCATAGTTTGTG+TGG | - | chr5_2:66564189-66564208 | Msa0782940:intron | 35.0% |
| ! | ATTCATAGTTTGTGTGGATC+TGG | - | chr5_2:66564195-66564214 | Msa0782940:intron | 35.0% |
| !!! | CTGCCAGCTTTTTCAATTTA+TGG | - | chr5_2:66564240-66564259 | Msa0782940:intron | 35.0% |
| ATTGCTATGTAGGCATATCT+TGG | - | chr5_2:66564264-66564283 | Msa0782940:intron | 35.0% | |
| !! | AGTTGATGAGTTTCTTGTAG+TGG | + | chr5_2:66564401-66564420 | None:intergenic | 35.0% |
| !! | AGATTTTGACAACTTGCATC+TGG | + | chr5_2:66564583-66564602 | None:intergenic | 35.0% |
| !! | TTCTGCCTTTAGTTTGTGAT+GGG | + | chr5_2:66564657-66564676 | None:intergenic | 35.0% |
| !! | TTTCTGCCTTTAGTTTGTGA+TGG | + | chr5_2:66564658-66564677 | None:intergenic | 35.0% |
| TCAAAGAGACTCAAAATGGA+AGG | - | chr5_2:66564689-66564708 | Msa0782940:CDS | 35.0% | |
| ! | CAAAAGCAGTCTAGAGTTAT+CGG | - | chr5_2:66564714-66564733 | Msa0782940:CDS | 35.0% |
| ! | AAAAGCAGTCTAGAGTTATC+GGG | - | chr5_2:66564715-66564734 | Msa0782940:CDS | 35.0% |
| TCACAATAAGCGAAGTTGTA+AGG | - | chr5_2:66564789-66564808 | Msa0782940:CDS | 35.0% | |
| ACACATCATCAACTATCTCA+TGG | + | chr5_2:66562635-66562654 | None:intergenic | 35.0% | |
| TATGGAATTTGACTCCATTG+CGG | - | chr5_2:66562722-66562741 | Msa0782940:CDS | 35.0% | |
| ! | GAATTCTTTTACATCCGCAA+TGG | + | chr5_2:66562739-66562758 | None:intergenic | 35.0% |
| TTTGCCAAGAAAGAAGGATT+TGG | - | chr5_2:66562768-66562787 | Msa0782940:CDS | 35.0% | |
| AACTCCAAATCCTTCTTTCT+TGG | + | chr5_2:66562775-66562794 | None:intergenic | 35.0% | |
| ATGTTTGTATGCGCTAATGA+AGG | - | chr5_2:66562825-66562844 | Msa0782940:CDS | 35.0% | |
| GTAAAGGGTGAAAATGAAGA+AGG | - | chr5_2:66562858-66562877 | Msa0782940:CDS | 35.0% | |
| TGCTTTACAATCAGTTCTTG+AGG | + | chr5_2:66562901-66562920 | None:intergenic | 35.0% | |
| TCACTTACTGTTTCAAAAGC+AGG | - | chr5_2:66562921-66562940 | Msa0782940:CDS | 35.0% | |
| CACTTACTGTTTCAAAAGCA+GGG | - | chr5_2:66562922-66562941 | Msa0782940:CDS | 35.0% | |
| GTTGAGAAGTTTGATGAAGA+AGG | - | chr5_2:66563065-66563084 | Msa0782940:CDS | 35.0% | |
| GAAAGTTGCTACAATGTTTC+AGG | - | chr5_2:66563100-66563119 | Msa0782940:CDS | 35.0% | |
| CAGAAGAAGAAATCTTGATG+TGG | - | chr5_2:66563175-66563194 | Msa0782940:CDS | 35.0% | |
| ATAAATTTCTTCTGGGTGGA+TGG | - | chr5_2:66563292-66563311 | Msa0782940:intron | 35.0% | |
| ! | TTGAGTGGTTGTTTAGAACA+TGG | - | chr5_2:66563482-66563501 | Msa0782940:CDS | 35.0% |
| AGAAGAATGGGAACGTATAA+TGG | - | chr5_2:66563732-66563751 | Msa0782940:intron | 35.0% | |
| AAGGAGAATGAATGGCTTAA+AGG | - | chr5_2:66563769-66563788 | Msa0782940:intron | 35.0% | |
| AGGAGAATGAATGGCTTAAA+GGG | - | chr5_2:66563770-66563789 | Msa0782940:intron | 35.0% | |
| ! | AAAGTGCTTCTGTTGAAAAC+AGG | + | chr5_2:66563823-66563842 | None:intergenic | 35.0% |
| !!! | AACAGAAGCACTTTTTTTGC+CGG | - | chr5_2:66563829-66563848 | Msa0782940:intron | 35.0% |
| ! | GAAGAGAGGATTTTGAATCA+AGG | - | chr5_2:66563980-66563999 | Msa0782940:intron | 35.0% |
| AGGGTCTCAGTATAGATATA+AGG | - | chr5_2:66564144-66564163 | Msa0782940:intron | 35.0% | |
| ! | AGACACATTCATAGTTTGTG+TGG | - | chr5_2:66564189-66564208 | Msa0782940:intron | 35.0% |
| ! | ATTCATAGTTTGTGTGGATC+TGG | - | chr5_2:66564195-66564214 | Msa0782940:intron | 35.0% |
| !!! | CTGCCAGCTTTTTCAATTTA+TGG | - | chr5_2:66564240-66564259 | Msa0782940:intron | 35.0% |
| ATTGCTATGTAGGCATATCT+TGG | - | chr5_2:66564264-66564283 | Msa0782940:intron | 35.0% | |
| !! | AGTTGATGAGTTTCTTGTAG+TGG | + | chr5_2:66564401-66564420 | None:intergenic | 35.0% |
| !! | AGATTTTGACAACTTGCATC+TGG | + | chr5_2:66564583-66564602 | None:intergenic | 35.0% |
| !! | TTCTGCCTTTAGTTTGTGAT+GGG | + | chr5_2:66564657-66564676 | None:intergenic | 35.0% |
| !! | TTTCTGCCTTTAGTTTGTGA+TGG | + | chr5_2:66564658-66564677 | None:intergenic | 35.0% |
| TCAAAGAGACTCAAAATGGA+AGG | - | chr5_2:66564689-66564708 | Msa0782940:CDS | 35.0% | |
| ! | CAAAAGCAGTCTAGAGTTAT+CGG | - | chr5_2:66564714-66564733 | Msa0782940:CDS | 35.0% |
| ! | AAAAGCAGTCTAGAGTTATC+GGG | - | chr5_2:66564715-66564734 | Msa0782940:CDS | 35.0% |
| TCACAATAAGCGAAGTTGTA+AGG | - | chr5_2:66564789-66564808 | Msa0782940:CDS | 35.0% | |
| GTCTTCTAAACACTCAACAG+TGG | + | chr5_2:66562613-66562632 | None:intergenic | 40.0% | |
| ! | AATATTAGCTTCAGGCGACT+TGG | + | chr5_2:66562688-66562707 | None:intergenic | 40.0% |
| ACATCGTTTGCCAAGAAAGA+AGG | - | chr5_2:66562762-66562781 | Msa0782940:CDS | 40.0% | |
| ! | AAGGATTTGGAGTTCGTGTT+CGG | - | chr5_2:66562781-66562800 | Msa0782940:CDS | 40.0% |
| AAGCAGGGAAGAGAAGTAAA+TGG | - | chr5_2:66562937-66562956 | Msa0782940:CDS | 40.0% | |
| AGCAGGGAAGAGAAGTAAAT+GGG | - | chr5_2:66562938-66562957 | Msa0782940:CDS | 40.0% | |
| ! | AATGGTTAGTCCTAAGAGTG+TGG | - | chr5_2:66562995-66563014 | Msa0782940:CDS | 40.0% |
| TTTCTTATGAGACCGCAGAT+AGG | + | chr5_2:66563021-66563040 | None:intergenic | 40.0% | |
| CTTCATCAAACTTCTCAACG+AGG | + | chr5_2:66563064-66563083 | None:intergenic | 40.0% | |
| !! | ATGAAGAAGGAGTACCTACA+GGG | - | chr5_2:66563078-66563097 | Msa0782940:CDS | 40.0% |
| ATTGTAGCAACTTTCCCTGT+AGG | + | chr5_2:66563095-66563114 | None:intergenic | 40.0% | |
| TGATGATTCAATCCGGTGAA+GGG | + | chr5_2:66563406-66563425 | None:intergenic | 40.0% | |
| ATGATGATTCAATCCGGTGA+AGG | + | chr5_2:66563407-66563426 | None:intergenic | 40.0% | |
| AGACTCAGAAGATGTTTGAG+TGG | - | chr5_2:66563467-66563486 | Msa0782940:CDS | 40.0% | |
| ACGAGTATGTGGGAAAACAT+TGG | + | chr5_2:66563581-66563600 | None:intergenic | 40.0% | |
| ! | CCTTTGTTTAGTGTTCATGC+CGG | + | chr5_2:66563851-66563870 | None:intergenic | 40.0% |
| TGGACAAAGGATGCTAACAA+AGG | - | chr5_2:66564343-66564362 | Msa0782940:CDS | 40.0% | |
| ! | GGTGCTGTGTTTATTGAAGA+TGG | - | chr5_2:66564364-66564383 | Msa0782940:CDS | 40.0% |
| ! | TTTCTTGTAGTGGAAGACTC+TGG | + | chr5_2:66564391-66564410 | None:intergenic | 40.0% |
| ! | TCAGATTTTGCTGCAAGATC+AGG | + | chr5_2:66564463-66564482 | None:intergenic | 40.0% |
| !! | GCTGATATCATCTGATTTGG+AGG | - | chr5_2:66564495-66564514 | Msa0782940:CDS | 40.0% |
| ! | TTTTGACAACTTGCATCTGG+AGG | + | chr5_2:66564580-66564599 | None:intergenic | 40.0% |
| !! | ATTGGTTCTGAAGACTCACT+TGG | + | chr5_2:66564619-66564638 | None:intergenic | 40.0% |
| AGAAGATCTTGCCAAGTTTG+TGG | - | chr5_2:66564757-66564776 | Msa0782940:CDS | 40.0% | |
| GTCTTCTAAACACTCAACAG+TGG | + | chr5_2:66562613-66562632 | None:intergenic | 40.0% | |
| ! | AATATTAGCTTCAGGCGACT+TGG | + | chr5_2:66562688-66562707 | None:intergenic | 40.0% |
| ACATCGTTTGCCAAGAAAGA+AGG | - | chr5_2:66562762-66562781 | Msa0782940:CDS | 40.0% | |
| ! | AAGGATTTGGAGTTCGTGTT+CGG | - | chr5_2:66562781-66562800 | Msa0782940:CDS | 40.0% |
| AAGCAGGGAAGAGAAGTAAA+TGG | - | chr5_2:66562937-66562956 | Msa0782940:CDS | 40.0% | |
| AGCAGGGAAGAGAAGTAAAT+GGG | - | chr5_2:66562938-66562957 | Msa0782940:CDS | 40.0% | |
| ! | AATGGTTAGTCCTAAGAGTG+TGG | - | chr5_2:66562995-66563014 | Msa0782940:CDS | 40.0% |
| TTTCTTATGAGACCGCAGAT+AGG | + | chr5_2:66563021-66563040 | None:intergenic | 40.0% | |
| CTTCATCAAACTTCTCAACG+AGG | + | chr5_2:66563064-66563083 | None:intergenic | 40.0% | |
| !! | ATGAAGAAGGAGTACCTACA+GGG | - | chr5_2:66563078-66563097 | Msa0782940:CDS | 40.0% |
| ATTGTAGCAACTTTCCCTGT+AGG | + | chr5_2:66563095-66563114 | None:intergenic | 40.0% | |
| TGATGATTCAATCCGGTGAA+GGG | + | chr5_2:66563406-66563425 | None:intergenic | 40.0% | |
| ATGATGATTCAATCCGGTGA+AGG | + | chr5_2:66563407-66563426 | None:intergenic | 40.0% | |
| AGACTCAGAAGATGTTTGAG+TGG | - | chr5_2:66563467-66563486 | Msa0782940:CDS | 40.0% | |
| ACGAGTATGTGGGAAAACAT+TGG | + | chr5_2:66563581-66563600 | None:intergenic | 40.0% | |
| ! | CCTTTGTTTAGTGTTCATGC+CGG | + | chr5_2:66563851-66563870 | None:intergenic | 40.0% |
| TGGACAAAGGATGCTAACAA+AGG | - | chr5_2:66564343-66564362 | Msa0782940:CDS | 40.0% | |
| ! | GGTGCTGTGTTTATTGAAGA+TGG | - | chr5_2:66564364-66564383 | Msa0782940:CDS | 40.0% |
| ! | TTTCTTGTAGTGGAAGACTC+TGG | + | chr5_2:66564391-66564410 | None:intergenic | 40.0% |
| ! | TCAGATTTTGCTGCAAGATC+AGG | + | chr5_2:66564463-66564482 | None:intergenic | 40.0% |
| !! | GCTGATATCATCTGATTTGG+AGG | - | chr5_2:66564495-66564514 | Msa0782940:CDS | 40.0% |
| ! | TTTTGACAACTTGCATCTGG+AGG | + | chr5_2:66564580-66564599 | None:intergenic | 40.0% |
| !! | ATTGGTTCTGAAGACTCACT+TGG | + | chr5_2:66564619-66564638 | None:intergenic | 40.0% |
| AGAAGATCTTGCCAAGTTTG+TGG | - | chr5_2:66564757-66564776 | Msa0782940:CDS | 40.0% | |
| !! | GATGAAGAAGGAGTACCTAC+AGG | - | chr5_2:66563077-66563096 | Msa0782940:CDS | 45.0% |
| !! | CTTTTTCTAGTCGGGATTGC+TGG | - | chr5_2:66563135-66563154 | Msa0782940:CDS | 45.0% |
| TAGAACATGGCTAGACGCAA+TGG | - | chr5_2:66563495-66563514 | Msa0782940:CDS | 45.0% | |
| AGAACATGGCTAGACGCAAT+GGG | - | chr5_2:66563496-66563515 | Msa0782940:CDS | 45.0% | |
| ! | TTTTCCCACATACTCGTCAC+CGG | - | chr5_2:66563584-66563603 | Msa0782940:CDS | 45.0% |
| ATAACCGGTGACGAGTATGT+GGG | + | chr5_2:66563591-66563610 | None:intergenic | 45.0% | |
| ! | CTCGTCACCGGTTATGTTTA+TGG | - | chr5_2:66563596-66563615 | Msa0782940:CDS | 45.0% |
| CCGGCATGAACACTAAACAA+AGG | - | chr5_2:66563848-66563867 | Msa0782940:intron | 45.0% | |
| TTGTGTGGATCTGGAGACAA+AGG | - | chr5_2:66564204-66564223 | Msa0782940:intron | 45.0% | |
| GGGAGTGGATCTCTGATAAT+TGG | + | chr5_2:66564637-66564656 | None:intergenic | 45.0% | |
| !! | CCTTTAGTTTGTGATGGGAG+TGG | + | chr5_2:66564652-66564671 | None:intergenic | 45.0% |
| CCACTCCCATCACAAACTAA+AGG | - | chr5_2:66564649-66564668 | Msa0782940:CDS | 45.0% | |
| TGCCAAGTTTGTGGTCTACA+CGG | - | chr5_2:66564766-66564785 | Msa0782940:CDS | 45.0% | |
| !! | GATGAAGAAGGAGTACCTAC+AGG | - | chr5_2:66563077-66563096 | Msa0782940:CDS | 45.0% |
| !! | CTTTTTCTAGTCGGGATTGC+TGG | - | chr5_2:66563135-66563154 | Msa0782940:CDS | 45.0% |
| TAGAACATGGCTAGACGCAA+TGG | - | chr5_2:66563495-66563514 | Msa0782940:CDS | 45.0% | |
| AGAACATGGCTAGACGCAAT+GGG | - | chr5_2:66563496-66563515 | Msa0782940:CDS | 45.0% | |
| ! | TTTTCCCACATACTCGTCAC+CGG | - | chr5_2:66563584-66563603 | Msa0782940:CDS | 45.0% |
| ATAACCGGTGACGAGTATGT+GGG | + | chr5_2:66563591-66563610 | None:intergenic | 45.0% | |
| ! | CTCGTCACCGGTTATGTTTA+TGG | - | chr5_2:66563596-66563615 | Msa0782940:CDS | 45.0% |
| CCGGCATGAACACTAAACAA+AGG | - | chr5_2:66563848-66563867 | Msa0782940:intron | 45.0% | |
| TTGTGTGGATCTGGAGACAA+AGG | - | chr5_2:66564204-66564223 | Msa0782940:intron | 45.0% | |
| GGGAGTGGATCTCTGATAAT+TGG | + | chr5_2:66564637-66564656 | None:intergenic | 45.0% | |
| !! | CCTTTAGTTTGTGATGGGAG+TGG | + | chr5_2:66564652-66564671 | None:intergenic | 45.0% |
| CCACTCCCATCACAAACTAA+AGG | - | chr5_2:66564649-66564668 | Msa0782940:CDS | 45.0% | |
| TGCCAAGTTTGTGGTCTACA+CGG | - | chr5_2:66564766-66564785 | Msa0782940:CDS | 45.0% | |
| ! | CTAAGAGTGTGGCCTATCTG+CGG | - | chr5_2:66563006-66563025 | Msa0782940:CDS | 50.0% |
| GGTGGATGGAAGAGCAAGAT+TGG | - | chr5_2:66563306-66563325 | Msa0782940:intron | 50.0% | |
| ! | ATGCCATTTGCACCCTTCAC+CGG | - | chr5_2:66563391-66563410 | Msa0782940:CDS | 50.0% |
| ! | AATCCGGTGAAGGGTGCAAA+TGG | + | chr5_2:66563397-66563416 | None:intergenic | 50.0% |
| CATAACCGGTGACGAGTATG+TGG | + | chr5_2:66563592-66563611 | None:intergenic | 50.0% | |
| GACCGTGTAGACCACAAACT+TGG | + | chr5_2:66564771-66564790 | None:intergenic | 50.0% | |
| ! | CTAAGAGTGTGGCCTATCTG+CGG | - | chr5_2:66563006-66563025 | Msa0782940:CDS | 50.0% |
| GGTGGATGGAAGAGCAAGAT+TGG | - | chr5_2:66563306-66563325 | Msa0782940:intron | 50.0% | |
| ! | ATGCCATTTGCACCCTTCAC+CGG | - | chr5_2:66563391-66563410 | Msa0782940:CDS | 50.0% |
| ! | AATCCGGTGAAGGGTGCAAA+TGG | + | chr5_2:66563397-66563416 | None:intergenic | 50.0% |
| CATAACCGGTGACGAGTATG+TGG | + | chr5_2:66563592-66563611 | None:intergenic | 50.0% | |
| GACCGTGTAGACCACAAACT+TGG | + | chr5_2:66564771-66564790 | None:intergenic | 50.0% | |
| CGCAGATAGGCCACACTCTT+AGG | + | chr5_2:66563008-66563027 | None:intergenic | 55.0% | |
| ACATGGCTAGACGCAATGGG+TGG | - | chr5_2:66563499-66563518 | Msa0782940:CDS | 55.0% | |
| CGCAGATAGGCCACACTCTT+AGG | + | chr5_2:66563008-66563027 | None:intergenic | 55.0% | |
| ACATGGCTAGACGCAATGGG+TGG | - | chr5_2:66563499-66563518 | Msa0782940:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 66562585 | 66564822 | 66562585 | ID=Msa0782940;Name=Msa0782940 |
| chr5_2 | mRNA | 66562585 | 66564822 | 66562585 | ID=Msa0782940-mRNA-1;Parent=Msa0782940;Name=Msa0782940-mRNA-1;_AED=0.10;_eAED=0.11;_QI=0|0|0|1|1|0.66|3|0|515 |
| chr5_2 | exon | 66564285 | 66564822 | 66564285 | ID=Msa0782940-mRNA-1:exon:19999;Parent=Msa0782940-mRNA-1 |
| chr5_2 | exon | 66563379 | 66563685 | 66563379 | ID=Msa0782940-mRNA-1:exon:19998;Parent=Msa0782940-mRNA-1 |
| chr5_2 | exon | 66562585 | 66563284 | 66562585 | ID=Msa0782940-mRNA-1:exon:19997;Parent=Msa0782940-mRNA-1 |
| chr5_2 | CDS | 66564285 | 66564822 | 66564285 | ID=Msa0782940-mRNA-1:cds;Parent=Msa0782940-mRNA-1 |
| chr5_2 | CDS | 66563379 | 66563685 | 66563379 | ID=Msa0782940-mRNA-1:cds;Parent=Msa0782940-mRNA-1 |
| chr5_2 | CDS | 66562585 | 66563284 | 66562585 | ID=Msa0782940-mRNA-1:cds;Parent=Msa0782940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
