AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0783150

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0783150 MtrunA17_Chr5g0438891 69.953 213 2 2 22 172 14 226 1.02e-93 278
Msa0783150 MtrunA17_Chr7g0249221 29.557 203 63 7 40 169 23 218 5.40e-14 68.6
Msa0783150 MtrunA17_Chr4g0066941 44.156 77 22 2 26 102 66 121 1.22e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0783150 AT2G32930.1 34.836 244 74 8 1 172 1 231 1.09e-30 115
Msa0783150 AT2G32930.2 34.274 248 74 8 1 172 1 235 6.95e-30 113
Msa0783150 AT1G04990.5 33.191 235 83 5 1 172 5 228 1.51e-29 112
Msa0783150 AT1G04990.1 33.191 235 83 5 1 172 5 228 2.25e-29 111
Msa0783150 AT1G04990.6 33.191 235 83 5 1 172 5 228 2.25e-29 111
Msa0783150 AT1G04990.2 33.191 235 83 5 1 172 5 228 2.25e-29 111
Msa0783150 AT2G32930.3 33.032 221 60 7 27 172 1 208 7.44e-24 97.1
Msa0783150 AT1G04990.4 40.909 110 52 3 63 172 51 147 4.07e-17 77.0
Msa0783150 AT1G04990.3 40.909 110 52 3 63 172 51 147 4.08e-17 77.4
Msa0783150 AT3G02830.1 33.929 112 38 3 21 106 18 119 1.46e-14 70.9
Msa0783150 AT3G02830.2 38.144 97 28 3 36 106 9 99 2.93e-14 69.7
Msa0783150 AT5G16540.2 37.634 93 26 2 44 110 39 125 3.51e-13 66.6
Msa0783150 AT5G16540.1 37.634 93 26 2 44 110 39 125 3.72e-13 66.6
Msa0783150 AT5G16540.3 37.634 93 26 2 44 110 18 104 4.73e-13 66.2
Msa0783150 AT5G16540.4 37.634 93 26 2 44 110 18 104 5.35e-13 65.5
Msa0783150 AT3G06410.1 33.058 121 46 4 20 113 29 141 1.34e-12 65.1
Msa0783150 AT5G18550.1 35.789 95 28 3 44 111 48 136 2.65e-11 61.2
Msa0783150 AT5G18550.3 35.789 95 28 3 44 111 16 104 2.69e-11 61.2
Msa0783150 AT5G18550.2 35.789 95 28 3 44 111 48 136 2.83e-11 61.2
Msa0783150 AT5G18550.4 35.789 95 28 3 44 111 48 136 3.12e-11 61.2

Find 126 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTGTGCTATCCTTTCTTT+AGG 0.127413 5_2:-66902428 None:intergenic
CAAACTTTGCTGCAACATTT+TGG 0.166321 5_2:-66898901 None:intergenic
TTCATCTCTTGGGGTCAATT+TGG 0.215644 5_2:+66903314 Msa0783150:three_prime_UTR
CCGGCGGGAGAGACACTTTC+TGG 0.243331 5_2:+66902296 Msa0783150:three_prime_UTR
AGACCCAGTTCTCATGTAAT+AGG 0.260132 5_2:-66901522 None:intergenic
TGGACAGTTGAAAGCCTTCT+TGG 0.267807 5_2:-66902926 None:intergenic
AGACAAGACTGGTTCTGTTT+TGG 0.272886 5_2:-66902051 None:intergenic
AGAACTGGGTCTTGCAAGTT+TGG 0.276971 5_2:+66901533 Msa0783150:CDS
AGATTTCAGGTTACTCAATA+TGG 0.278926 5_2:+66900215 Msa0783150:intron
TCTGGTTGCTCAGGTCTATC+TGG 0.304316 5_2:-66902344 None:intergenic
AGCACCGGAACATGCAAATA+TGG 0.322651 5_2:+66902383 Msa0783150:three_prime_UTR
TTTGTGCTATCCTTTCTTTA+GGG 0.324288 5_2:-66902427 None:intergenic
TGCTCTTATTACAGAATCTA+TGG 0.326952 5_2:+66902788 Msa0783150:three_prime_UTR
AACTCACCTAGATGTTAAAA+AGG 0.326963 5_2:-66899076 None:intergenic
ACATAGCCAAACATCCTAAA+AGG 0.329287 5_2:-66902094 None:intergenic
GAACCAGTCTTGTCTTGTTT+AGG 0.329436 5_2:+66902059 Msa0783150:three_prime_UTR
TTCGTATTGCAGAAGCTATT+CGG 0.340006 5_2:+66899859 Msa0783150:intron
TACATGCATTCAGTGGTTAC+TGG 0.345380 5_2:+66902140 Msa0783150:three_prime_UTR
ATTTGAGCGCCGAATGTGAT+TGG 0.349002 5_2:-66902016 None:intergenic
CCGAGAATGTCATATTTATC+TGG 0.351902 5_2:+66901692 Msa0783150:CDS
ACCTTCGTCCGAGTCTTTAC+AGG 0.352984 5_2:+66903063 Msa0783150:three_prime_UTR
ATCTATGGAGTATGCAAGTT+TGG 0.357289 5_2:+66902803 Msa0783150:three_prime_UTR
TATAATAATAATATTCCAAT+TGG 0.364535 5_2:-66898937 None:intergenic
CCAGATAAATATGACATTCT+CGG 0.368337 5_2:-66901692 None:intergenic
CCACAACAGGCAGCTTCCTT+TGG 0.370576 5_2:+66901578 Msa0783150:CDS
TCCACAACTGTTACTTCATC+AGG 0.377937 5_2:+66901632 Msa0783150:CDS
GCATTATGCCTGCGCTGAGC+TGG 0.382644 5_2:+66901762 Msa0783150:CDS
GAGGGAGGGGACGCCGCCAC+TGG 0.385507 5_2:-66901611 None:intergenic
CTATCCTTTCTTTAGGGTGG+TGG 0.386879 5_2:-66902421 None:intergenic
ATAAAACCAGTAGGCATTGC+AGG 0.387637 5_2:-66902242 None:intergenic
TGTCCCTATTACATGAGAAC+TGG 0.394120 5_2:+66901518 Msa0783150:CDS
CTGCAGAATTGCAGATCAAA+AGG 0.410499 5_2:-66903175 None:intergenic
TGCATGAATAGAGTTTCTAT+TGG 0.410554 5_2:+66903387 Msa0783150:three_prime_UTR
CATTGATTTCCAATCACATT+CGG 0.410566 5_2:+66902007 Msa0783150:three_prime_UTR
CTCAAATAATATACGCAGTC+AGG 0.416206 5_2:-66899957 None:intergenic
GTTGTTGTTAATGTTATTGT+CGG 0.419591 5_2:+66898861 None:intergenic
TATTTACAGTCTGGTTGCTC+AGG 0.430194 5_2:-66902353 None:intergenic
GCCTCAATCAATGCCTTATC+CGG 0.436673 5_2:+66899920 Msa0783150:CDS
AATGCACTTACAGGTCTCAT+AGG 0.440267 5_2:-66902476 None:intergenic
CTCATAAAGTATTTACAGTC+TGG 0.442202 5_2:-66902362 None:intergenic
AAAGCCTTCTTGGACTAGTA+AGG 0.442412 5_2:-66902916 None:intergenic
AAGAACTTCCTGAGAGAGTT+GGG 0.442954 5_2:+66900240 Msa0783150:CDS
GCAGGAAACCCACCAGCATA+TGG 0.444203 5_2:-66901659 None:intergenic
TCAGGTTGCCCAACTCTCTC+AGG 0.445004 5_2:-66900248 None:intergenic
TTCTGAGAGATAGCCACAAC+TGG 0.446204 5_2:-66902848 None:intergenic
AATAAACATACCTCACAATC+AGG 0.458208 5_2:-66900266 None:intergenic
GACCCAGTTCTCATGTAATA+GGG 0.459797 5_2:-66901521 None:intergenic
GGCATAATGCCTTGTGAAGA+AGG 0.459870 5_2:-66901749 None:intergenic
CAACAGGCAGCTTCCTTTGG+AGG 0.460678 5_2:+66901581 Msa0783150:CDS
ATATACTGATTAACCTGGTA+TGG 0.468136 5_2:+66901864 Msa0783150:three_prime_UTR
AGATCCATATTTGCATGTTC+CGG 0.472187 5_2:-66902387 None:intergenic
CCATCTGGTGATAACATTGA+AGG 0.474193 5_2:+66899247 Msa0783150:CDS
AGCTTGTTTAGATGAATCTT+CGG 0.476106 5_2:-66903017 None:intergenic
TCACCAGGTCGATCCGGATA+AGG 0.480066 5_2:-66899933 None:intergenic
ATTGACCCCAAGAGATGAAA+GGG 0.482468 5_2:-66903310 None:intergenic
CAAGTTTCATCATCCACAAC+AGG 0.488215 5_2:+66901565 Msa0783150:CDS
TCAGGTTCACCAGGTCGATC+CGG 0.491203 5_2:-66899939 None:intergenic
AATGTCATATTTATCTGGAC+AGG 0.494113 5_2:+66901697 Msa0783150:CDS
TGCAGAATTGCAGATCAAAA+GGG 0.495104 5_2:-66903174 None:intergenic
ATTAACCCTGCAATGCCTAC+TGG 0.496129 5_2:+66902236 Msa0783150:three_prime_UTR
AATGCTGGTTCTAATCCATC+TGG 0.496458 5_2:+66899232 Msa0783150:CDS
CCAAAGGAAGCTGCCTGTTG+TGG 0.502820 5_2:-66901578 None:intergenic
TTGTGACAATCATGAGCTTG+TGG 0.505135 5_2:+66903223 Msa0783150:three_prime_UTR
ATGGAGATGTCTCGGTTGGT+TGG 0.505736 5_2:-66902946 None:intergenic
GATCTGCAATTCTGCAGGGT+TGG 0.514799 5_2:+66903181 Msa0783150:three_prime_UTR
GTGCTATCCTTTCTTTAGGG+TGG 0.514914 5_2:-66902424 None:intergenic
AGGAGGCACATAAGATTGAA+TGG 0.519059 5_2:-66901720 None:intergenic
GAAGAACTTCCTGAGAGAGT+TGG 0.521193 5_2:+66900239 Msa0783150:CDS
CCTTCAATGTTATCACCAGA+TGG 0.522380 5_2:-66899247 None:intergenic
GGGTTGGATAGTTTGTTCAA+TGG 0.523230 5_2:+66903197 Msa0783150:three_prime_UTR
TGTGACAATCATGAGCTTGT+GGG 0.528817 5_2:+66903224 Msa0783150:three_prime_UTR
AGTAACAGTTGTGGAGGGAG+GGG 0.529224 5_2:-66901624 None:intergenic
TTCGATGGAGATGTCTCGGT+TGG 0.530171 5_2:-66902950 None:intergenic
TTGTCAGTTGATTGTTTCGA+TGG 0.531763 5_2:-66902965 None:intergenic
ATAATAATATTCCAATTGGA+TGG 0.532368 5_2:-66898933 None:intergenic
ATGCTGGTGGGTTTCCTGCA+TGG 0.533086 5_2:+66901663 Msa0783150:CDS
TTGTTGTTAATGTTATTGTC+GGG 0.538910 5_2:+66898862 None:intergenic
TGTCTACGACTACATGAATC+CGG 0.541765 5_2:+66902277 Msa0783150:three_prime_UTR
TATACGCAGTCAGGTTCACC+AGG 0.548463 5_2:-66899948 None:intergenic
TGTAAATACTTTATGAGCAC+CGG 0.550440 5_2:+66902368 Msa0783150:three_prime_UTR
AGAGACACTTTCTGGTGGAC+AGG 0.555997 5_2:+66902304 Msa0783150:three_prime_UTR
AGTTCCACCACCCTAAAGAA+AGG 0.558473 5_2:+66902417 Msa0783150:three_prime_UTR
GAAGTAACAGTTGTGGAGGG+AGG 0.561560 5_2:-66901626 None:intergenic
AAGTAACAGTTGTGGAGGGA+GGG 0.565711 5_2:-66901625 None:intergenic
GCCAAACATCCTAAAAGGCT+AGG 0.566574 5_2:-66902089 None:intergenic
TTTCCTAAACAAGACAAGAC+TGG 0.567008 5_2:-66902062 None:intergenic
TTGTTTCGATGGAGATGTCT+CGG 0.567749 5_2:-66902954 None:intergenic
CAAATTTGATCATCCAGTTG+TGG 0.569323 5_2:+66902835 Msa0783150:three_prime_UTR
TCCGGATAAGGCATTGATTG+AGG 0.571672 5_2:-66899921 None:intergenic
AATTGACCCCAAGAGATGAA+AGG 0.573938 5_2:-66903311 None:intergenic
TAGTTGCTCCAGCTCAGCGC+AGG 0.575573 5_2:-66901770 None:intergenic
CACACATATACTGATTAACC+TGG 0.579424 5_2:+66901859 Msa0783150:three_prime_UTR
GCTGAGCTGGAGCAACTACA+TGG 0.582157 5_2:+66901775 Msa0783150:CDS
GGATGATCAAATTTGCATGT+TGG 0.583840 5_2:-66902827 None:intergenic
CCAGAAAGTGTCTCTCCCGC+CGG 0.585264 5_2:-66902296 None:intergenic
TCCTGTAAAGACTCGGACGA+AGG 0.587786 5_2:-66903064 None:intergenic
CTCTCCTTACTAGTCCAAGA+AGG 0.588326 5_2:+66902912 Msa0783150:three_prime_UTR
ACATTATCAATTAATCCACT+TGG 0.589067 5_2:+66902449 Msa0783150:three_prime_UTR
GTGACAATCATGAGCTTGTG+GGG 0.594243 5_2:+66903225 Msa0783150:three_prime_UTR
ACCTGATGAAGTAACAGTTG+TGG 0.598830 5_2:-66901633 None:intergenic
AAATACTGATAGAGTAGGCG+AGG 0.601211 5_2:-66902882 None:intergenic
GTCCCTATTACATGAGAACT+GGG 0.603851 5_2:+66901519 Msa0783150:CDS
TGGAGGAGCTTATCCAGTGG+CGG 0.605551 5_2:+66901598 Msa0783150:CDS
ATGCCTTATCCGGATCGACC+TGG 0.607838 5_2:+66899930 Msa0783150:CDS
TGATGAAGTAACAGTTGTGG+AGG 0.607944 5_2:-66901630 None:intergenic
TCGTAACTACATGCATTCAG+TGG 0.608471 5_2:+66902133 Msa0783150:three_prime_UTR
GCATCAAATACTGATAGAGT+AGG 0.609062 5_2:-66902887 None:intergenic
ATTCTCGGCATTGACCATGC+AGG 0.609928 5_2:-66901677 None:intergenic
GTGGCTATCTCTCAGAACTA+CGG 0.612160 5_2:+66902854 Msa0783150:three_prime_UTR
TACGACTACATGAATCCGGC+GGG 0.613456 5_2:+66902281 Msa0783150:three_prime_UTR
CACTGGATAAGCTCCTCCAA+AGG 0.616300 5_2:-66901594 None:intergenic
TTAGATCCAATAAAACCAGT+AGG 0.616664 5_2:-66902251 None:intergenic
AGTTTATTCCTGTAAAGACT+CGG 0.621015 5_2:-66903071 None:intergenic
GCAGAATTGCAGATCAAAAG+GGG 0.625119 5_2:-66903173 None:intergenic
TTAGCTAAACGAATACATGA+AGG 0.634123 5_2:+66901907 Msa0783150:three_prime_UTR
GCGGGAGAGACACTTTCTGG+TGG 0.637718 5_2:+66902299 Msa0783150:three_prime_UTR
TAAAACCAGTAGGCATTGCA+GGG 0.641286 5_2:-66902241 None:intergenic
CTTTGGAGGAGCTTATCCAG+TGG 0.642465 5_2:+66901595 Msa0783150:CDS
AGTTGGGCAACCTGATTGTG+AGG 0.647405 5_2:+66900256 Msa0783150:CDS
CTACGACTACATGAATCCGG+CGG 0.676232 5_2:+66902280 Msa0783150:three_prime_UTR
AATACTGATAGAGTAGGCGA+GGG 0.679258 5_2:-66902881 None:intergenic
CAGAATTGCAGATCAAAAGG+GGG 0.684919 5_2:-66903172 None:intergenic
GATGAAGTAACAGTTGTGGA+GGG 0.690790 5_2:-66901629 None:intergenic
TTGACCCCAAGAGATGAAAG+GGG 0.697209 5_2:-66903309 None:intergenic
GGTCTCATAGGAAGACCAAG+TGG 0.702644 5_2:-66902464 None:intergenic
TGACAATCATGAGCTTGTGG+GGG 0.723888 5_2:+66903226 Msa0783150:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATAATAATATTCCAAT+TGG - chr5_2:66898940-66898959 None:intergenic 10.0%
!!! ATTTATATTTTCATTTTCAT+TGG + chr5_2:66899042-66899061 Msa0783150:five_prime_UTR 10.0%
!!! ATAGTTTATAGATTATTTTT+TGG - chr5_2:66902632-66902651 None:intergenic 10.0%
!!! AAAAGTATCTTAAAATATTA+GGG - chr5_2:66902701-66902720 None:intergenic 10.0%
!!! TAAAAGTATCTTAAAATATT+AGG - chr5_2:66902702-66902721 None:intergenic 10.0%
!! GAAAAAAAAAGAAAAAAAAA+AGG - chr5_2:66903123-66903142 None:intergenic 10.0%
!!! GGTTTTATAATATGTAATTT+AGG + chr5_2:66900170-66900189 Msa0783150:intron 15.0%
!! ACAAAAATCTAATAAATGTT+TGG - chr5_2:66900782-66900801 None:intergenic 15.0%
!!! TTATTAGATTTTTGTTTTGA+TGG + chr5_2:66900787-66900806 Msa0783150:intron 15.0%
!! CTCTTAATTAAGTTAATTAT+AGG - chr5_2:66901038-66901057 None:intergenic 15.0%
!! TTAACTTAATTAAGAGTTTA+TGG + chr5_2:66901042-66901061 Msa0783150:intron 15.0%
!! TACTAATATTAAATTCTGTT+TGG - chr5_2:66901225-66901244 None:intergenic 15.0%
!!! TTTTTTTCACAATAAAAAGT+TGG - chr5_2:66902531-66902550 None:intergenic 15.0%
!!! TTGAAGTTTTATTTTTCTTT+TGG + chr5_2:66903096-66903115 Msa0783150:three_prime_UTR 15.0%
!! ATAATAATATTCCAATTGGA+TGG - chr5_2:66898936-66898955 None:intergenic 20.0%
!!! TTTTTACCTTTTTAACATCT+AGG + chr5_2:66899070-66899089 Msa0783150:five_prime_UTR 20.0%
!! ATTTCATCTTAAAAGCTTAA+AGG + chr5_2:66899119-66899138 Msa0783150:intron 20.0%
!! TTTCATCTTAAAAGCTTAAA+GGG + chr5_2:66899120-66899139 Msa0783150:intron 20.0%
!!! ATCTTGTTAAATTTTCTCAT+TGG + chr5_2:66900149-66900168 Msa0783150:intron 20.0%
!!! TAAAAAGTGAATTTGTTCAA+GGG - chr5_2:66900417-66900436 None:intergenic 20.0%
!!! ATGATATTTACTATTTTCCT+CGG + chr5_2:66900440-66900459 Msa0783150:intron 20.0%
!! AAATCTAATAAATGTTTGGA+AGG - chr5_2:66900778-66900797 None:intergenic 20.0%
!! ATCTAGTAAATAAATTCTAC+AGG - chr5_2:66900829-66900848 None:intergenic 20.0%
!!! TTATCTTTTTGTTATAGAAG+TGG - chr5_2:66901103-66901122 None:intergenic 20.0%
!!! CTATTTTATTTGTCGAAAAA+GGG + chr5_2:66902209-66902228 Msa0783150:three_prime_UTR 20.0%
!! TTGAAAACTTGTCTATTTTC+TGG - chr5_2:66899211-66899230 None:intergenic 25.0%
!!! TGATGATGTGTTTCTATTTT+TGG + chr5_2:66899408-66899427 Msa0783150:intron 25.0%
! TTTGCTTTATGATGCAATAA+AGG + chr5_2:66899665-66899684 Msa0783150:intron 25.0%
! TTGCTTTATGATGCAATAAA+GGG + chr5_2:66899666-66899685 Msa0783150:intron 25.0%
! TTATTACTGCTTGAATTTGT+TGG + chr5_2:66899790-66899809 Msa0783150:intron 25.0%
! TCAGAAGAAAAATCATGAAA+AGG - chr5_2:66900068-66900087 None:intergenic 25.0%
! CTCATACTTTATTAGATTTC+AGG + chr5_2:66900202-66900221 Msa0783150:intron 25.0%
!!! TTGTGAGGTATGTTTATTTT+TGG + chr5_2:66900271-66900290 Msa0783150:intron 25.0%
! TTAAGAGTGAATTCAAGAAT+AGG + chr5_2:66900381-66900400 Msa0783150:intron 25.0%
!! GTAAAAAGTGAATTTGTTCA+AGG - chr5_2:66900418-66900437 None:intergenic 25.0%
!! ACTTAATTTTTGTCCTTTTG+TGG + chr5_2:66900487-66900506 Msa0783150:intron 25.0%
! AATTAGCAAGTATTTCAAAC+AGG - chr5_2:66900552-66900571 None:intergenic 25.0%
! TAGAACACCAATAAATGAAA+AGG + chr5_2:66900664-66900683 Msa0783150:intron 25.0%
! AGAACACCAATAAATGAAAA+GGG + chr5_2:66900665-66900684 Msa0783150:intron 25.0%
!! TTTCTTCCCTTTTCATTTAT+TGG - chr5_2:66900674-66900693 None:intergenic 25.0%
! CTTCTTCTTAAATTATGTCA+TGG - chr5_2:66900892-66900911 None:intergenic 25.0%
! TGACATAATTTAAGAAGAAG+AGG + chr5_2:66900892-66900911 Msa0783150:intron 25.0%
! AATAAGATGAAAAGATCTTC+AGG + chr5_2:66901169-66901188 Msa0783150:intron 25.0%
! ATAAGATGAAAAGATCTTCA+GGG + chr5_2:66901170-66901189 Msa0783150:intron 25.0%
!!! AATCTACAATTGTTGCTTTT+AGG + chr5_2:66901484-66901503 Msa0783150:intron 25.0%
!!! GCTATTTTATTTGTCGAAAA+AGG + chr5_2:66902208-66902227 Msa0783150:three_prime_UTR 25.0%
! ACATTATCAATTAATCCACT+TGG + chr5_2:66902449-66902468 Msa0783150:three_prime_UTR 25.0%
!! CATTTTCTTCTTAATGCTTA+GGG + chr5_2:66902495-66902514 Msa0783150:intron 25.0%
! CAATAAAAAGTTGGAACAAA+CGG - chr5_2:66902522-66902541 None:intergenic 25.0%
! AGTATCTTAAAATATTAGGG+AGG - chr5_2:66902698-66902717 None:intergenic 25.0%
!! GAATTTCACTCAGTATTTTT+AGG - chr5_2:66903348-66903367 None:intergenic 25.0%
AACTCACCTAGATGTTAAAA+AGG - chr5_2:66899079-66899098 None:intergenic 30.0%
! TGTTCTGATCATCATTGTTT+TGG + chr5_2:66899346-66899365 Msa0783150:intron 30.0%
!! TTAACTTGTGTGAGTGAAAA+AGG + chr5_2:66899538-66899557 Msa0783150:intron 30.0%
TGATTCTATGCAAGTAAACA+TGG - chr5_2:66899599-66899618 None:intergenic 30.0%
TTATTATACTTGATCGCACA+TGG + chr5_2:66899623-66899642 Msa0783150:intron 30.0%
CTGATCCAGTTTAATTGTAT+TGG + chr5_2:66899745-66899764 Msa0783150:intron 30.0%
ACAGTCCAATACAATTAAAC+TGG - chr5_2:66899753-66899772 None:intergenic 30.0%
AAAAGAAAGAGGTTCATTAC+AGG - chr5_2:66900041-66900060 None:intergenic 30.0%
GAAAAGGAAACAAAAGAAAG+AGG - chr5_2:66900052-66900071 None:intergenic 30.0%
! TTTTATGAACATGTAGTCTG+TGG + chr5_2:66900119-66900138 Msa0783150:intron 30.0%
!! AGATTTCAGGTTACTCAATA+TGG + chr5_2:66900215-66900234 Msa0783150:intron 30.0%
AATAAACATACCTCACAATC+AGG - chr5_2:66900269-66900288 None:intergenic 30.0%
GGACAAAAATTAAGTGCAAA+AGG - chr5_2:66900482-66900501 None:intergenic 30.0%
AGGCAAAACCTATTATTGAA+GGG - chr5_2:66900532-66900551 None:intergenic 30.0%
AGATCTCTCTATGACAATAA+TGG + chr5_2:66900845-66900864 Msa0783150:intron 30.0%
GAGGAAATAATATCAAGTTC+AGG + chr5_2:66900911-66900930 Msa0783150:intron 30.0%
! ACTGTTTTCATAAGTTATCC+TGG + chr5_2:66901134-66901153 Msa0783150:intron 30.0%
! TTTGGAATAGCTTATGGAAA+CGG - chr5_2:66901207-66901226 None:intergenic 30.0%
! ATTCTGTTTGGAATAGCTTA+TGG - chr5_2:66901213-66901232 None:intergenic 30.0%
! TTGCAGTATTTTCTTAAGAC+AGG + chr5_2:66901271-66901290 Msa0783150:intron 30.0%
!! ACCTAAAGTATTGAAGACAA+CGG - chr5_2:66901359-66901378 None:intergenic 30.0%
! AATAAAGCACTTGGTTCAAA+GGG - chr5_2:66901407-66901426 None:intergenic 30.0%
! AAATAAAGCACTTGGTTCAA+AGG - chr5_2:66901408-66901427 None:intergenic 30.0%
! TGTGGAAAAAATAAAGCACT+TGG - chr5_2:66901416-66901435 None:intergenic 30.0%
CATTAGAAGAGTAAACTTTG+TGG - chr5_2:66901434-66901453 None:intergenic 30.0%
CACAAAGTTTACTCTTCTAA+TGG + chr5_2:66901432-66901451 Msa0783150:intron 30.0%
CCAGATAAATATGACATTCT+CGG - chr5_2:66901695-66901714 None:intergenic 30.0%
AATGTCATATTTATCTGGAC+AGG + chr5_2:66901697-66901716 Msa0783150:CDS 30.0%
! ATATACTGATTAACCTGGTA+TGG + chr5_2:66901864-66901883 Msa0783150:three_prime_UTR 30.0%
TTAGCTAAACGAATACATGA+AGG + chr5_2:66901907-66901926 Msa0783150:three_prime_UTR 30.0%
!! CATTGATTTCCAATCACATT+CGG + chr5_2:66902007-66902026 Msa0783150:three_prime_UTR 30.0%
!! GTTCTGTTTTGGATGTTAAT+CGG - chr5_2:66902043-66902062 None:intergenic 30.0%
TTAGATCCAATAAAACCAGT+AGG - chr5_2:66902254-66902273 None:intergenic 30.0%
! CTCATAAAGTATTTACAGTC+TGG - chr5_2:66902365-66902384 None:intergenic 30.0%
TGTAAATACTTTATGAGCAC+CGG + chr5_2:66902368-66902387 Msa0783150:three_prime_UTR 30.0%
TTTGTGCTATCCTTTCTTTA+GGG - chr5_2:66902430-66902449 None:intergenic 30.0%
TAAGAAGAAAATGCACTTAC+AGG - chr5_2:66902488-66902507 None:intergenic 30.0%
! GCATTTTCTTCTTAATGCTT+AGG + chr5_2:66902494-66902513 Msa0783150:intron 30.0%
! TGATTTTCTGATTCCTATGT+TGG + chr5_2:66902743-66902762 Msa0783150:intron 30.0%
TGCTCTTATTACAGAATCTA+TGG + chr5_2:66902788-66902807 Msa0783150:three_prime_UTR 30.0%
! AGCTTGTTTAGATGAATCTT+CGG - chr5_2:66903020-66903039 None:intergenic 30.0%
AGTTTATTCCTGTAAAGACT+CGG - chr5_2:66903074-66903093 None:intergenic 30.0%
TGCATGAATAGAGTTTCTAT+TGG + chr5_2:66903387-66903406 Msa0783150:three_prime_UTR 30.0%
! CAAACTTTGCTGCAACATTT+TGG - chr5_2:66898904-66898923 None:intergenic 35.0%
! TGCAGAATTTTCCATCCAAT+TGG + chr5_2:66898922-66898941 Msa0783150:five_prime_UTR 35.0%
TAAAAGCTTAAAGGGTCATC+AGG + chr5_2:66899128-66899147 Msa0783150:intron 35.0%
AAAAGCTTAAAGGGTCATCA+GGG + chr5_2:66899129-66899148 Msa0783150:intron 35.0%
!! AGACAAGTTTTCAAGAATGC+TGG + chr5_2:66899217-66899236 Msa0783150:CDS 35.0%
!!! CTGATCATCATTGTTTTGGT+TGG + chr5_2:66899350-66899369 Msa0783150:intron 35.0%
CAATGTTGTTGTATTGTGTG+AGG + chr5_2:66899488-66899507 Msa0783150:intron 35.0%
TTCTGCAATACGAATCACAA+AGG - chr5_2:66899853-66899872 None:intergenic 35.0%
TTCGTATTGCAGAAGCTATT+CGG + chr5_2:66899859-66899878 Msa0783150:intron 35.0%
CTCAAATAATATACGCAGTC+AGG - chr5_2:66899960-66899979 None:intergenic 35.0%
CTGACTGCGTATATTATTTG+AGG + chr5_2:66899958-66899977 Msa0783150:intron 35.0%
TGCGTATATTATTTGAGGAC+TGG + chr5_2:66899963-66899982 Msa0783150:intron 35.0%
TTACAGGTGAAATGTTAGCA+GGG - chr5_2:66900025-66900044 None:intergenic 35.0%
ATTACAGGTGAAATGTTAGC+AGG - chr5_2:66900026-66900045 None:intergenic 35.0%
!! TTTCTTTCCCTCGTTTTGAA+CGG + chr5_2:66900315-66900334 Msa0783150:intron 35.0%
TGGAAATAAGAGACCACAAA+AGG - chr5_2:66900503-66900522 None:intergenic 35.0%
CTATTATTGAAGGGGTTGAA+TGG - chr5_2:66900523-66900542 None:intergenic 35.0%
CATTCAACCCCTTCAATAAT+AGG + chr5_2:66900521-66900540 Msa0783150:intron 35.0%
GGCAAAACCTATTATTGAAG+GGG - chr5_2:66900531-66900550 None:intergenic 35.0%
CAGGCAAAACCTATTATTGA+AGG - chr5_2:66900533-66900552 None:intergenic 35.0%
!! TGCTCTGAAATATTTAGCCT+AGG + chr5_2:66900627-66900646 Msa0783150:intron 35.0%
!! GCTCTGAAATATTTAGCCTA+GGG + chr5_2:66900628-66900647 Msa0783150:intron 35.0%
AAAAGGGAAGAAACTGATGT+AGG + chr5_2:66900681-66900700 Msa0783150:intron 35.0%
AATAAGTTATCCTGCCAATG+TGG + chr5_2:66900735-66900754 Msa0783150:intron 35.0%
! CAAAAGACGATTTTCCACAT+TGG - chr5_2:66900752-66900771 None:intergenic 35.0%
AAGACAGGAACATGTAAGTA+TGG + chr5_2:66901286-66901305 Msa0783150:intron 35.0%
AATATCATCATCCCAAAGAC+AGG + chr5_2:66901320-66901339 Msa0783150:intron 35.0%
!! CCTAAAGTATTGAAGACAAC+GGG - chr5_2:66901358-66901377 None:intergenic 35.0%
CCGAGAATGTCATATTTATC+TGG + chr5_2:66901692-66901711 Msa0783150:CDS 35.0%
! CACACATATACTGATTAACC+TGG + chr5_2:66901859-66901878 Msa0783150:three_prime_UTR 35.0%
! GACAGTTTTTAAACCATACC+AGG - chr5_2:66901880-66901899 None:intergenic 35.0%
GCGACATCTAGTAGTAAAAA+TGG - chr5_2:66901956-66901975 None:intergenic 35.0%
TTTCCTAAACAAGACAAGAC+TGG - chr5_2:66902065-66902084 None:intergenic 35.0%
!! GGAAATATTCCTAGCCTTTT+AGG + chr5_2:66902080-66902099 Msa0783150:three_prime_UTR 35.0%
ACATAGCCAAACATCCTAAA+AGG - chr5_2:66902097-66902116 None:intergenic 35.0%
AGATCCATATTTGCATGTTC+CGG - chr5_2:66902390-66902409 None:intergenic 35.0%
GTTTGTGCTATCCTTTCTTT+AGG - chr5_2:66902431-66902450 None:intergenic 35.0%
ATCTATGGAGTATGCAAGTT+TGG + chr5_2:66902803-66902822 Msa0783150:three_prime_UTR 35.0%
GGATGATCAAATTTGCATGT+TGG - chr5_2:66902830-66902849 None:intergenic 35.0%
CAAATTTGATCATCCAGTTG+TGG + chr5_2:66902835-66902854 Msa0783150:three_prime_UTR 35.0%
GCATCAAATACTGATAGAGT+AGG - chr5_2:66902890-66902909 None:intergenic 35.0%
TTGTCAGTTGATTGTTTCGA+TGG - chr5_2:66902968-66902987 None:intergenic 35.0%
TGCAGAATTGCAGATCAAAA+GGG - chr5_2:66903177-66903196 None:intergenic 35.0%
! TTTTGATCTGCAATTCTGCA+GGG + chr5_2:66903177-66903196 Msa0783150:three_prime_UTR 35.0%
!!! GATAGAGGGCATTTTTTTTG+TGG + chr5_2:66903248-66903267 Msa0783150:three_prime_UTR 35.0%
!! AATGCTGGTTCTAATCCATC+TGG + chr5_2:66899232-66899251 Msa0783150:CDS 40.0%
CCTTCAATGTTATCACCAGA+TGG - chr5_2:66899250-66899269 None:intergenic 40.0%
CCATCTGGTGATAACATTGA+AGG + chr5_2:66899247-66899266 Msa0783150:CDS 40.0%
ATTGTATTGGACTGTGAGTG+TGG + chr5_2:66899758-66899777 Msa0783150:intron 40.0%
TATTTGAGGACTGGAATGTG+TGG + chr5_2:66899972-66899991 Msa0783150:intron 40.0%
TGTTAGCAGGGTGATTATAG+CGG - chr5_2:66900013-66900032 None:intergenic 40.0%
AAGAACTTCCTGAGAGAGTT+GGG + chr5_2:66900240-66900259 Msa0783150:CDS 40.0%
GTGCTTCATGAAATCGAATG+TGG + chr5_2:66900337-66900356 Msa0783150:intron 40.0%
CATGAAATCGAATGTGGATG+TGG + chr5_2:66900343-66900362 Msa0783150:intron 40.0%
CATGAGCACAAAATGTCTGT+AGG + chr5_2:66900576-66900595 Msa0783150:intron 40.0%
ACCAAGACTATGCTCATACA+AGG + chr5_2:66900600-66900619 Msa0783150:intron 40.0%
CCAAGACTATGCTCATACAA+GGG + chr5_2:66900601-66900620 Msa0783150:intron 40.0%
CTAACAATGAACATGTCCCT+AGG - chr5_2:66900647-66900666 None:intergenic 40.0%
AAGAAACTGATGTAGGTCGT+AGG + chr5_2:66900688-66900707 Msa0783150:intron 40.0%
TCCAGTGCAATGAAACTTGT+TGG + chr5_2:66901002-66901021 Msa0783150:intron 40.0%
ACCAACAAGTTTCATTGCAC+TGG - chr5_2:66901006-66901025 None:intergenic 40.0%
!! AGTGCAATGAAACTTGTTGG+TGG + chr5_2:66901005-66901024 Msa0783150:intron 40.0%
AAGTTATCCTGGAGAGCTTA+TGG + chr5_2:66901145-66901164 Msa0783150:intron 40.0%
CTTATTTCCATAAGCTCTCC+AGG - chr5_2:66901155-66901174 None:intergenic 40.0%
TAGCTTATGGAAACGGCTTA+TGG - chr5_2:66901200-66901219 None:intergenic 40.0%
CCCGTTGTCTTCAATACTTT+AGG + chr5_2:66901355-66901374 Msa0783150:intron 40.0%
TGTCCCTATTACATGAGAAC+TGG + chr5_2:66901518-66901537 Msa0783150:CDS 40.0%
GTCCCTATTACATGAGAACT+GGG + chr5_2:66901519-66901538 Msa0783150:CDS 40.0%
GACCCAGTTCTCATGTAATA+GGG - chr5_2:66901524-66901543 None:intergenic 40.0%
AGACCCAGTTCTCATGTAAT+AGG - chr5_2:66901525-66901544 None:intergenic 40.0%
CAAGTTTCATCATCCACAAC+AGG + chr5_2:66901565-66901584 Msa0783150:CDS 40.0%
GATGAAGTAACAGTTGTGGA+GGG - chr5_2:66901632-66901651 None:intergenic 40.0%
TGATGAAGTAACAGTTGTGG+AGG - chr5_2:66901633-66901652 None:intergenic 40.0%
! TCCACAACTGTTACTTCATC+AGG + chr5_2:66901632-66901651 Msa0783150:CDS 40.0%
ACCTGATGAAGTAACAGTTG+TGG - chr5_2:66901636-66901655 None:intergenic 40.0%
! TCATCAGGTTTTCCATATGC+TGG + chr5_2:66901647-66901666 Msa0783150:CDS 40.0%
! AGGAGGCACATAAGATTGAA+TGG - chr5_2:66901723-66901742 None:intergenic 40.0%
TGTGAAGAAGGCAAAAAAGG+AGG - chr5_2:66901740-66901759 None:intergenic 40.0%
CCTTGTGAAGAAGGCAAAAA+AGG - chr5_2:66901743-66901762 None:intergenic 40.0%
!!! CCTTTTTTGCCTTCTTCACA+AGG + chr5_2:66901740-66901759 Msa0783150:CDS 40.0%
!!! AGACAAGACTGGTTCTGTTT+TGG - chr5_2:66902054-66902073 None:intergenic 40.0%
!! GAACCAGTCTTGTCTTGTTT+AGG + chr5_2:66902059-66902078 Msa0783150:three_prime_UTR 40.0%
!!! TCCTAGCCTTTTAGGATGTT+TGG + chr5_2:66902088-66902107 Msa0783150:three_prime_UTR 40.0%
TCGTAACTACATGCATTCAG+TGG + chr5_2:66902133-66902152 Msa0783150:three_prime_UTR 40.0%
TACATGCATTCAGTGGTTAC+TGG + chr5_2:66902140-66902159 Msa0783150:three_prime_UTR 40.0%
! TAAAACCAGTAGGCATTGCA+GGG - chr5_2:66902244-66902263 None:intergenic 40.0%
! ATAAAACCAGTAGGCATTGC+AGG - chr5_2:66902245-66902264 None:intergenic 40.0%
!!! GCAATGCCTACTGGTTTTAT+TGG + chr5_2:66902245-66902264 Msa0783150:three_prime_UTR 40.0%
TGTCTACGACTACATGAATC+CGG + chr5_2:66902277-66902296 Msa0783150:three_prime_UTR 40.0%
TATTTACAGTCTGGTTGCTC+AGG - chr5_2:66902356-66902375 None:intergenic 40.0%
AATGCACTTACAGGTCTCAT+AGG - chr5_2:66902479-66902498 None:intergenic 40.0%
AATACTGATAGAGTAGGCGA+GGG - chr5_2:66902884-66902903 None:intergenic 40.0%
AAATACTGATAGAGTAGGCG+AGG - chr5_2:66902885-66902904 None:intergenic 40.0%
!! AAAGCCTTCTTGGACTAGTA+AGG - chr5_2:66902919-66902938 None:intergenic 40.0%
TTGTTTCGATGGAGATGTCT+CGG - chr5_2:66902957-66902976 None:intergenic 40.0%
AGATCAAAAGGGGGAATAGA+TGG - chr5_2:66903166-66903185 None:intergenic 40.0%
CAGAATTGCAGATCAAAAGG+GGG - chr5_2:66903175-66903194 None:intergenic 40.0%
GCAGAATTGCAGATCAAAAG+GGG - chr5_2:66903176-66903195 None:intergenic 40.0%
CTGCAGAATTGCAGATCAAA+AGG - chr5_2:66903178-66903197 None:intergenic 40.0%
! CTTTTGATCTGCAATTCTGC+AGG + chr5_2:66903176-66903195 Msa0783150:three_prime_UTR 40.0%
!! GGGTTGGATAGTTTGTTCAA+TGG + chr5_2:66903197-66903216 Msa0783150:three_prime_UTR 40.0%
TTGTGACAATCATGAGCTTG+TGG + chr5_2:66903223-66903242 Msa0783150:three_prime_UTR 40.0%
TGTGACAATCATGAGCTTGT+GGG + chr5_2:66903224-66903243 Msa0783150:three_prime_UTR 40.0%
! TCTTTTCCCCTTTCATCTCT+TGG + chr5_2:66903303-66903322 Msa0783150:three_prime_UTR 40.0%
! CTTTTCCCCTTTCATCTCTT+GGG + chr5_2:66903304-66903323 Msa0783150:three_prime_UTR 40.0%
! TTTTCCCCTTTCATCTCTTG+GGG + chr5_2:66903305-66903324 Msa0783150:three_prime_UTR 40.0%
ATTGACCCCAAGAGATGAAA+GGG - chr5_2:66903313-66903332 None:intergenic 40.0%
AATTGACCCCAAGAGATGAA+AGG - chr5_2:66903314-66903333 None:intergenic 40.0%
TTCATCTCTTGGGGTCAATT+TGG + chr5_2:66903314-66903333 Msa0783150:three_prime_UTR 40.0%
GCCTCAATCAATGCCTTATC+CGG + chr5_2:66899920-66899939 Msa0783150:CDS 45.0%
!! TCCGGATAAGGCATTGATTG+AGG - chr5_2:66899924-66899943 None:intergenic 45.0%
AGGACTGGAATGTGTGGTTA+CGG + chr5_2:66899978-66899997 Msa0783150:intron 45.0%
GAAGAACTTCCTGAGAGAGT+TGG + chr5_2:66900239-66900258 Msa0783150:CDS 45.0%
!! TGAAGCACCGTTCAAAACGA+GGG - chr5_2:66900325-66900344 None:intergenic 45.0%
!! ATGAAGCACCGTTCAAAACG+AGG - chr5_2:66900326-66900345 None:intergenic 45.0%
GAAACTAAGACTTCTGTCCG+AGG - chr5_2:66900460-66900479 None:intergenic 45.0%
CCCTTGTATGAGCATAGTCT+TGG - chr5_2:66900604-66900623 None:intergenic 45.0%
CTGATGTAGGTCGTAGGATA+CGG + chr5_2:66900694-66900713 Msa0783150:intron 45.0%
! AGACGATTTTCCACATTGGC+AGG - chr5_2:66900748-66900767 None:intergenic 45.0%
GATGTACAAACCTGACGCAT+GGG - chr5_2:66901385-66901404 None:intergenic 45.0%
AGAACTGGGTCTTGCAAGTT+TGG + chr5_2:66901533-66901552 Msa0783150:CDS 45.0%
AAGTAACAGTTGTGGAGGGA+GGG - chr5_2:66901628-66901647 None:intergenic 45.0%
! TCAGGTTTTCCATATGCTGG+TGG + chr5_2:66901650-66901669 Msa0783150:CDS 45.0%
! CAGGTTTTCCATATGCTGGT+GGG + chr5_2:66901651-66901670 Msa0783150:CDS 45.0%
GGCATAATGCCTTGTGAAGA+AGG - chr5_2:66901752-66901771 None:intergenic 45.0%
!! ATTTGAGCGCCGAATGTGAT+TGG - chr5_2:66902019-66902038 None:intergenic 45.0%
GCCAAACATCCTAAAAGGCT+AGG - chr5_2:66902092-66902111 None:intergenic 45.0%
ATTAACCCTGCAATGCCTAC+TGG + chr5_2:66902236-66902255 Msa0783150:three_prime_UTR 45.0%
! AGCACCGGAACATGCAAATA+TGG + chr5_2:66902383-66902402 Msa0783150:three_prime_UTR 45.0%
AGTTCCACCACCCTAAAGAA+AGG + chr5_2:66902417-66902436 Msa0783150:three_prime_UTR 45.0%
!! CTATCCTTTCTTTAGGGTGG+TGG - chr5_2:66902424-66902443 None:intergenic 45.0%
! GTGCTATCCTTTCTTTAGGG+TGG - chr5_2:66902427-66902446 None:intergenic 45.0%
! TTCCTATGTTGGTTGTCTGC+AGG + chr5_2:66902754-66902773 Msa0783150:intron 45.0%
! TCCTATGTTGGTTGTCTGCA+GGG + chr5_2:66902755-66902774 Msa0783150:intron 45.0%
! TTCTGAGAGATAGCCACAAC+TGG - chr5_2:66902851-66902870 None:intergenic 45.0%
GTGGCTATCTCTCAGAACTA+CGG + chr5_2:66902854-66902873 Msa0783150:three_prime_UTR 45.0%
CTCTCCTTACTAGTCCAAGA+AGG + chr5_2:66902912-66902931 Msa0783150:three_prime_UTR 45.0%
TGGACAGTTGAAAGCCTTCT+TGG - chr5_2:66902929-66902948 None:intergenic 45.0%
GTGACAATCATGAGCTTGTG+GGG + chr5_2:66903225-66903244 Msa0783150:three_prime_UTR 45.0%
TGACAATCATGAGCTTGTGG+GGG + chr5_2:66903226-66903245 Msa0783150:three_prime_UTR 45.0%
TTGACCCCAAGAGATGAAAG+GGG - chr5_2:66903312-66903331 None:intergenic 45.0%
!!! TTTTTTTTTTCTTTTTTTTT+CGG + chr5_2:66903122-66903141 Msa0783150:three_prime_UTR 5.0%
TATACGCAGTCAGGTTCACC+AGG - chr5_2:66899951-66899970 None:intergenic 50.0%
GGACTGGAATGTGTGGTTAC+GGG + chr5_2:66899979-66899998 Msa0783150:intron 50.0%
AGTTGGGCAACCTGATTGTG+AGG + chr5_2:66900256-66900275 Msa0783150:CDS 50.0%
AGGTCGTAGGATACGGAATG+AGG + chr5_2:66900701-66900720 Msa0783150:intron 50.0%
CATCATCCCAAAGACAGGAG+AGG + chr5_2:66901325-66901344 Msa0783150:intron 50.0%
TTTAGGTCTTCCCATGCGTC+AGG + chr5_2:66901372-66901391 Msa0783150:intron 50.0%
GGATGTACAAACCTGACGCA+TGG - chr5_2:66901386-66901405 None:intergenic 50.0%
CACTGGATAAGCTCCTCCAA+AGG - chr5_2:66901597-66901616 None:intergenic 50.0%
! CTTTGGAGGAGCTTATCCAG+TGG + chr5_2:66901595-66901614 Msa0783150:CDS 50.0%
AGTAACAGTTGTGGAGGGAG+GGG - chr5_2:66901627-66901646 None:intergenic 50.0%
GAAGTAACAGTTGTGGAGGG+AGG - chr5_2:66901629-66901648 None:intergenic 50.0%
!! ATTCTCGGCATTGACCATGC+AGG - chr5_2:66901680-66901699 None:intergenic 50.0%
CTACGACTACATGAATCCGG+CGG + chr5_2:66902280-66902299 Msa0783150:three_prime_UTR 50.0%
TACGACTACATGAATCCGGC+GGG + chr5_2:66902281-66902300 Msa0783150:three_prime_UTR 50.0%
! AGAGACACTTTCTGGTGGAC+AGG + chr5_2:66902304-66902323 Msa0783150:three_prime_UTR 50.0%
TCTGGTTGCTCAGGTCTATC+TGG - chr5_2:66902347-66902366 None:intergenic 50.0%
GGTCTCATAGGAAGACCAAG+TGG - chr5_2:66902467-66902486 None:intergenic 50.0%
TCCCTGCAGACAACCAACAT+AGG - chr5_2:66902759-66902778 None:intergenic 50.0%
ATGGAGATGTCTCGGTTGGT+TGG - chr5_2:66902949-66902968 None:intergenic 50.0%
TTCGATGGAGATGTCTCGGT+TGG - chr5_2:66902953-66902972 None:intergenic 50.0%
ACCTTCGTCCGAGTCTTTAC+AGG + chr5_2:66903063-66903082 Msa0783150:three_prime_UTR 50.0%
TCCTGTAAAGACTCGGACGA+AGG - chr5_2:66903067-66903086 None:intergenic 50.0%
GATCTGCAATTCTGCAGGGT+TGG + chr5_2:66903181-66903200 Msa0783150:three_prime_UTR 50.0%
ATGAGCTTGTGGGGGATAGA+GGG + chr5_2:66903234-66903253 Msa0783150:three_prime_UTR 50.0%
ATGCCTTATCCGGATCGACC+TGG + chr5_2:66899930-66899949 Msa0783150:CDS 55.0%
TCACCAGGTCGATCCGGATA+AGG - chr5_2:66899936-66899955 None:intergenic 55.0%
TCAGGTTCACCAGGTCGATC+CGG - chr5_2:66899942-66899961 None:intergenic 55.0%
! TCAGGTTGCCCAACTCTCTC+AGG - chr5_2:66900251-66900270 None:intergenic 55.0%
GCAGCACCTCTCCTGTCTTT+GGG - chr5_2:66901334-66901353 None:intergenic 55.0%
TGCAGCACCTCTCCTGTCTT+TGG - chr5_2:66901335-66901354 None:intergenic 55.0%
CCAAAGGAAGCTGCCTGTTG+TGG - chr5_2:66901581-66901600 None:intergenic 55.0%
CCACAACAGGCAGCTTCCTT+TGG + chr5_2:66901578-66901597 Msa0783150:CDS 55.0%
CAACAGGCAGCTTCCTTTGG+AGG + chr5_2:66901581-66901600 Msa0783150:CDS 55.0%
TGGAGGAGCTTATCCAGTGG+CGG + chr5_2:66901598-66901617 Msa0783150:CDS 55.0%
GCAGGAAACCCACCAGCATA+TGG - chr5_2:66901662-66901681 None:intergenic 55.0%
!! ATGCTGGTGGGTTTCCTGCA+TGG + chr5_2:66901663-66901682 Msa0783150:CDS 55.0%
GCTGAGCTGGAGCAACTACA+TGG + chr5_2:66901775-66901794 Msa0783150:CDS 55.0%
CATGAGCTTGTGGGGGATAG+AGG + chr5_2:66903233-66903252 Msa0783150:three_prime_UTR 55.0%
GCATTATGCCTGCGCTGAGC+TGG + chr5_2:66901762-66901781 Msa0783150:CDS 60.0%
TAGTTGCTCCAGCTCAGCGC+AGG - chr5_2:66901773-66901792 None:intergenic 60.0%
!! CCAGAAAGTGTCTCTCCCGC+CGG - chr5_2:66902299-66902318 None:intergenic 60.0%
GCGGGAGAGACACTTTCTGG+TGG + chr5_2:66902299-66902318 Msa0783150:three_prime_UTR 60.0%
CCGGCGGGAGAGACACTTTC+TGG + chr5_2:66902296-66902315 Msa0783150:three_prime_UTR 65.0%
! GAGGGAGGGGACGCCGCCAC+TGG - chr5_2:66901614-66901633 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 66898870 66903452 66898870 ID=Msa0783150;Name=Msa0783150
chr5_2 mRNA 66898870 66903452 66898870 ID=Msa0783150-mRNA-1;Parent=Msa0783150;Name=Msa0783150-mRNA-1;_AED=0.21;_eAED=0.21;_QI=222|0.5|0.71|0.85|0.83|0.71|7|1359|172
chr5_2 exon 66898870 66899091 66898870 ID=Msa0783150-mRNA-1:exon:20105;Parent=Msa0783150-mRNA-1
chr5_2 exon 66899205 66899268 66899205 ID=Msa0783150-mRNA-1:exon:20106;Parent=Msa0783150-mRNA-1
chr5_2 exon 66899871 66899965 66899871 ID=Msa0783150-mRNA-1:exon:20107;Parent=Msa0783150-mRNA-1
chr5_2 exon 66900192 66900197 66900192 ID=Msa0783150-mRNA-1:exon:20108;Parent=Msa0783150-mRNA-1
chr5_2 exon 66900224 66900277 66900224 ID=Msa0783150-mRNA-1:exon:20109;Parent=Msa0783150-mRNA-1
chr5_2 exon 66901506 66902487 66901506 ID=Msa0783150-mRNA-1:exon:20110;Parent=Msa0783150-mRNA-1
chr5_2 exon 66902776 66903452 66902776 ID=Msa0783150-mRNA-1:exon:20111;Parent=Msa0783150-mRNA-1
chr5_2 five_prime_UTR 66898870 66899091 66898870 ID=Msa0783150-mRNA-1:five_prime_utr;Parent=Msa0783150-mRNA-1
chr5_2 CDS 66899205 66899268 66899205 ID=Msa0783150-mRNA-1:cds;Parent=Msa0783150-mRNA-1
chr5_2 CDS 66899871 66899965 66899871 ID=Msa0783150-mRNA-1:cds;Parent=Msa0783150-mRNA-1
chr5_2 CDS 66900192 66900197 66900192 ID=Msa0783150-mRNA-1:cds;Parent=Msa0783150-mRNA-1
chr5_2 CDS 66900224 66900277 66900224 ID=Msa0783150-mRNA-1:cds;Parent=Msa0783150-mRNA-1
chr5_2 CDS 66901506 66901805 66901506 ID=Msa0783150-mRNA-1:cds;Parent=Msa0783150-mRNA-1
chr5_2 three_prime_UTR 66901806 66902487 66901806 ID=Msa0783150-mRNA-1:three_prime_utr;Parent=Msa0783150-mRNA-1
chr5_2 three_prime_UTR 66902776 66903452 66902776 ID=Msa0783150-mRNA-1:three_prime_utr;Parent=Msa0783150-mRNA-1
Gene Sequence

>Msa0783150

ATGCCAGAAAATAGACAAGTTTTCAAGAATGCTGGTTCTAATCCATCTGGTGATAACATTGAAGAAGCTATTCGGCGTTTGAAAATCAATAGTACTCGAGACAGAGATGCTGTGCCTCAATCAATGCCTTATCCGGATCGACCTGGTGAACCTGACTGCGTAAAAGTTACTCAATATGGTGAAGAACTTCCTGAGAGAGTTGGGCAACCTGATTGTGAGGAAGAAAAATCATGTCCCTATTACATGAGAACTGGGTCTTGCAAGTTTGGAGTTGCATGCAAGTTTCATCATCCACAACAGGCAGCTTCCTTTGGAGGAGCTTATCCAGTGGCGGCGTCCCCTCCCTCCACAACTGTTACTTCATCAGGTTTTCCATATGCTGGTGGGTTTCCTGCATGGTCAATGCCGAGAATGTCATATTTATCTGGACAGGCCATTCAATCTTATGTGCCTCCTTTTTTGCCTTCTTCACAAGGCATTATGCCTGCGCTGAGCTGGAGCAACTACATGGTTAGTTAA
Protein sequence

>Msa0783150

MPENRQVFKNAGSNPSGDNIEEAIRRLKINSTRDRDAVPQSMPYPDRPGEPDCVKVTQYGEELPERVGQPDCEEEKSCPYYMRTGSCKFGVACKFHHPQQAASFGGAYPVAASPPSTTVTSSGFPYAGGFPAWSMPRMSYLSGQAIQSYVPPFLPSSQGIMPALSWSNYMVS*