Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0783970 | sp|Q8LBW3|LBD12_ARATH | 78.947 | 133 | 24 | 1 | 5 | 133 | 5 | 137 | 2.48e-71 | 216 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0783970 | G7K288 | 98.204 | 167 | 2 | 1 | 3 | 168 | 1 | 167 | 3.89e-117 | 337 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0783970 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0783970 | MtrunA17_Chr5g0437571 | 98.204 | 167 | 2 | 1 | 3 | 168 | 1 | 167 | 7.49e-121 | 337 |
| Msa0783970 | MtrunA17_Chr3g0114061 | 71.951 | 164 | 37 | 4 | 3 | 162 | 1 | 159 | 9.30e-79 | 231 |
| Msa0783970 | MtrunA17_Chr3g0106101 | 64.773 | 176 | 46 | 5 | 3 | 162 | 1 | 176 | 5.33e-71 | 212 |
| Msa0783970 | MtrunA17_Chr2g0311601 | 76.106 | 113 | 27 | 0 | 1 | 113 | 6 | 118 | 1.04e-60 | 185 |
| Msa0783970 | MtrunA17_Chr4g0043421 | 56.287 | 167 | 62 | 1 | 1 | 167 | 8 | 163 | 4.52e-60 | 184 |
| Msa0783970 | MtrunA17_Chr7g0227511 | 53.020 | 149 | 66 | 1 | 6 | 150 | 9 | 157 | 1.37e-50 | 160 |
| Msa0783970 | MtrunA17_Chr4g0058651 | 52.532 | 158 | 58 | 1 | 6 | 146 | 9 | 166 | 9.59e-50 | 158 |
| Msa0783970 | MtrunA17_Chr3g0117121 | 71.154 | 104 | 30 | 0 | 6 | 109 | 8 | 111 | 2.27e-49 | 157 |
| Msa0783970 | MtrunA17_Chr4g0030001 | 64.035 | 114 | 40 | 1 | 7 | 119 | 23 | 136 | 3.64e-49 | 157 |
| Msa0783970 | MtrunA17_Chr5g0438091 | 60.504 | 119 | 47 | 0 | 3 | 121 | 34 | 152 | 4.76e-49 | 157 |
| Msa0783970 | MtrunA17_Chr6g0449641 | 57.377 | 122 | 52 | 0 | 6 | 127 | 7 | 128 | 1.57e-48 | 154 |
| Msa0783970 | MtrunA17_Chr3g0129071 | 66.667 | 108 | 36 | 0 | 7 | 114 | 46 | 153 | 5.59e-48 | 155 |
| Msa0783970 | MtrunA17_Chr1g0200201 | 64.865 | 111 | 39 | 0 | 9 | 119 | 73 | 183 | 1.30e-47 | 154 |
| Msa0783970 | MtrunA17_Chr6g0449651 | 49.315 | 146 | 63 | 1 | 6 | 151 | 65 | 199 | 4.13e-47 | 152 |
| Msa0783970 | MtrunA17_Chr3g0115431 | 60.684 | 117 | 45 | 1 | 6 | 122 | 7 | 122 | 1.56e-45 | 149 |
| Msa0783970 | MtrunA17_Chr5g0402611 | 59.200 | 125 | 50 | 1 | 6 | 129 | 6 | 130 | 4.75e-45 | 150 |
| Msa0783970 | MtrunA17_Chr3g0113891 | 67.000 | 100 | 33 | 0 | 6 | 105 | 12 | 111 | 8.47e-44 | 143 |
| Msa0783970 | MtrunA17_Chr5g0432451 | 68.932 | 103 | 32 | 0 | 7 | 109 | 42 | 144 | 1.89e-43 | 144 |
| Msa0783970 | MtrunA17_Chr3g0097221 | 62.136 | 103 | 39 | 0 | 6 | 108 | 5 | 107 | 1.20e-42 | 143 |
| Msa0783970 | MtrunA17_Chr5g0437401 | 61.538 | 104 | 40 | 0 | 5 | 108 | 8 | 111 | 7.19e-42 | 138 |
| Msa0783970 | MtrunA17_Chr8g0353981 | 63.551 | 107 | 39 | 0 | 6 | 112 | 5 | 111 | 1.55e-41 | 139 |
| Msa0783970 | MtrunA17_Chr5g0444351 | 52.294 | 109 | 52 | 0 | 9 | 117 | 6 | 114 | 1.39e-38 | 128 |
| Msa0783970 | MtrunA17_Chr7g0260971 | 56.604 | 106 | 45 | 1 | 4 | 108 | 10 | 115 | 1.41e-38 | 130 |
| Msa0783970 | MtrunA17_Chr1g0184281 | 60.396 | 101 | 39 | 1 | 8 | 107 | 15 | 115 | 6.60e-38 | 129 |
| Msa0783970 | MtrunA17_Chr8g0351721 | 52.846 | 123 | 54 | 2 | 5 | 123 | 15 | 137 | 6.85e-38 | 129 |
| Msa0783970 | MtrunA17_Chr7g0225111 | 50.450 | 111 | 55 | 0 | 7 | 117 | 4 | 114 | 7.51e-37 | 123 |
| Msa0783970 | MtrunA17_Chr8g0351701 | 56.863 | 102 | 43 | 1 | 8 | 108 | 23 | 124 | 4.26e-36 | 125 |
| Msa0783970 | MtrunA17_Chr7g0245871 | 57.843 | 102 | 42 | 1 | 8 | 108 | 27 | 128 | 6.34e-36 | 125 |
| Msa0783970 | MtrunA17_Chr7g0261031 | 47.857 | 140 | 61 | 4 | 4 | 132 | 4 | 142 | 5.72e-35 | 122 |
| Msa0783970 | MtrunA17_Chr5g0435641 | 41.497 | 147 | 73 | 3 | 4 | 142 | 3 | 144 | 1.57e-33 | 117 |
| Msa0783970 | MtrunA17_Chr1g0184271 | 57.732 | 97 | 38 | 2 | 8 | 102 | 12 | 107 | 1.89e-33 | 118 |
| Msa0783970 | MtrunA17_Chr6g0460951 | 49.038 | 104 | 52 | 1 | 7 | 109 | 39 | 142 | 1.72e-32 | 115 |
| Msa0783970 | MtrunA17_Chr7g0245861 | 58.065 | 93 | 36 | 2 | 5 | 94 | 9 | 101 | 3.50e-31 | 109 |
| Msa0783970 | MtrunA17_Chr8g0374601 | 48.515 | 101 | 52 | 0 | 8 | 108 | 26 | 126 | 2.60e-30 | 111 |
| Msa0783970 | MtrunA17_Chr8g0374591 | 46.535 | 101 | 54 | 0 | 8 | 108 | 8 | 108 | 1.52e-29 | 105 |
| Msa0783970 | MtrunA17_Chr8g0374581 | 47.573 | 103 | 53 | 1 | 8 | 109 | 8 | 110 | 9.18e-28 | 103 |
| Msa0783970 | MtrunA17_Chr6g0460941 | 50.000 | 88 | 43 | 1 | 8 | 94 | 7 | 94 | 9.23e-27 | 97.1 |
| Msa0783970 | MtrunA17_Chr6g0452691 | 40.351 | 114 | 67 | 1 | 3 | 115 | 4 | 117 | 9.26e-27 | 99.8 |
| Msa0783970 | MtrunA17_Chr4g0059901 | 43.333 | 120 | 67 | 1 | 2 | 120 | 4 | 123 | 8.72e-25 | 96.7 |
| Msa0783970 | MtrunA17_Chr6g0452671 | 41.935 | 93 | 54 | 0 | 9 | 101 | 12 | 104 | 2.62e-24 | 94.0 |
| Msa0783970 | MtrunA17_Chr6g0452661 | 44.578 | 83 | 45 | 1 | 6 | 87 | 7 | 89 | 5.31e-23 | 91.7 |
| Msa0783970 | MtrunA17_Chr4g0040831 | 35.200 | 125 | 78 | 1 | 4 | 125 | 11 | 135 | 9.20e-23 | 89.7 |
| Msa0783970 | MtrunA17_Chr2g0326051 | 61.194 | 67 | 26 | 0 | 53 | 119 | 5 | 71 | 2.16e-22 | 86.7 |
| Msa0783970 | MtrunA17_Chr2g0330201 | 35.238 | 105 | 68 | 0 | 4 | 108 | 15 | 119 | 7.71e-21 | 86.7 |
| Msa0783970 | MtrunA17_Chr4g0055441 | 40.426 | 94 | 51 | 2 | 9 | 97 | 3 | 96 | 1.02e-20 | 83.2 |
| Msa0783970 | MtrunA17_Chr8g0342351 | 31.159 | 138 | 95 | 0 | 9 | 146 | 13 | 150 | 4.57e-20 | 84.0 |
| Msa0783970 | MtrunA17_Chr4g0046201 | 39.080 | 87 | 53 | 0 | 9 | 95 | 7 | 93 | 4.33e-19 | 81.6 |
| Msa0783970 | MtrunA17_Chr2g0326041 | 64.583 | 48 | 17 | 0 | 7 | 54 | 32 | 79 | 5.81e-19 | 77.0 |
| Msa0783970 | MtrunA17_Chr5g0439111 | 39.759 | 83 | 49 | 1 | 6 | 87 | 7 | 89 | 6.40e-18 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0783970 | AT2G30130.1 | 78.947 | 133 | 24 | 1 | 5 | 133 | 5 | 137 | 2.52e-72 | 216 |
| Msa0783970 | AT1G31320.1 | 69.167 | 120 | 37 | 0 | 1 | 120 | 6 | 125 | 9.29e-53 | 166 |
| Msa0783970 | AT2G28500.1 | 55.714 | 140 | 61 | 1 | 7 | 146 | 54 | 192 | 5.05e-51 | 163 |
| Msa0783970 | AT1G16530.1 | 70.093 | 107 | 31 | 1 | 7 | 112 | 13 | 119 | 9.30e-51 | 160 |
| Msa0783970 | AT1G07900.1 | 59.091 | 132 | 53 | 1 | 7 | 138 | 32 | 162 | 1.19e-50 | 161 |
| Msa0783970 | AT3G27650.1 | 67.308 | 104 | 34 | 0 | 6 | 109 | 37 | 140 | 1.16e-48 | 155 |
| Msa0783970 | AT5G63090.4 | 69.903 | 103 | 31 | 0 | 6 | 108 | 9 | 111 | 4.03e-48 | 154 |
| Msa0783970 | AT5G63090.3 | 69.903 | 103 | 31 | 0 | 6 | 108 | 9 | 111 | 4.03e-48 | 154 |
| Msa0783970 | AT5G63090.2 | 69.903 | 103 | 31 | 0 | 6 | 108 | 9 | 111 | 4.03e-48 | 154 |
| Msa0783970 | AT5G63090.1 | 69.903 | 103 | 31 | 0 | 6 | 108 | 9 | 111 | 4.03e-48 | 154 |
| Msa0783970 | AT2G30340.1 | 60.504 | 119 | 47 | 0 | 7 | 125 | 51 | 169 | 1.87e-47 | 155 |
| Msa0783970 | AT2G30340.2 | 60.504 | 119 | 47 | 0 | 7 | 125 | 52 | 170 | 2.07e-47 | 155 |
| Msa0783970 | AT2G40470.2 | 70.874 | 103 | 30 | 0 | 7 | 109 | 19 | 121 | 4.98e-45 | 147 |
| Msa0783970 | AT2G40470.1 | 70.874 | 103 | 30 | 0 | 7 | 109 | 44 | 146 | 6.11e-45 | 147 |
| Msa0783970 | AT2G23660.2 | 57.265 | 117 | 49 | 1 | 6 | 122 | 3 | 118 | 7.82e-45 | 150 |
| Msa0783970 | AT2G23660.3 | 57.265 | 117 | 49 | 1 | 6 | 122 | 3 | 118 | 7.82e-45 | 150 |
| Msa0783970 | AT2G23660.1 | 57.265 | 117 | 49 | 1 | 6 | 122 | 3 | 118 | 7.82e-45 | 150 |
| Msa0783970 | AT5G66870.1 | 64.078 | 103 | 37 | 0 | 6 | 108 | 5 | 107 | 6.74e-44 | 147 |
| Msa0783970 | AT3G26660.1 | 59.091 | 110 | 45 | 0 | 9 | 118 | 6 | 115 | 5.51e-43 | 139 |
| Msa0783970 | AT3G26620.1 | 59.091 | 110 | 45 | 0 | 9 | 118 | 6 | 115 | 6.08e-43 | 139 |
| Msa0783970 | AT3G11090.1 | 58.621 | 116 | 47 | 1 | 6 | 120 | 9 | 124 | 9.67e-42 | 137 |
| Msa0783970 | AT1G65620.1 | 66.019 | 103 | 35 | 0 | 6 | 108 | 7 | 109 | 6.31e-41 | 136 |
| Msa0783970 | AT1G65620.4 | 66.019 | 103 | 35 | 0 | 6 | 108 | 7 | 109 | 6.31e-41 | 136 |
| Msa0783970 | AT1G65620.3 | 66.019 | 103 | 35 | 0 | 6 | 108 | 7 | 109 | 6.31e-41 | 136 |
| Msa0783970 | AT1G65620.5 | 66.019 | 103 | 35 | 0 | 6 | 108 | 7 | 109 | 6.31e-41 | 136 |
| Msa0783970 | AT1G65620.2 | 66.019 | 103 | 35 | 0 | 6 | 108 | 7 | 109 | 6.31e-41 | 136 |
| Msa0783970 | AT4G00210.1 | 45.283 | 159 | 70 | 3 | 4 | 161 | 7 | 149 | 1.32e-37 | 129 |
| Msa0783970 | AT2G42430.1 | 55.660 | 106 | 46 | 1 | 4 | 108 | 11 | 116 | 7.47e-37 | 127 |
| Msa0783970 | AT3G03760.1 | 55.769 | 104 | 45 | 1 | 7 | 109 | 50 | 153 | 1.60e-36 | 127 |
| Msa0783970 | AT2G45410.1 | 50.388 | 129 | 60 | 2 | 11 | 135 | 19 | 147 | 2.01e-36 | 125 |
| Msa0783970 | AT2G42440.1 | 47.143 | 140 | 64 | 4 | 4 | 141 | 3 | 134 | 4.68e-35 | 123 |
| Msa0783970 | AT2G31310.1 | 45.205 | 146 | 68 | 4 | 3 | 137 | 1 | 145 | 9.50e-35 | 120 |
| Msa0783970 | AT2G45420.1 | 53.846 | 104 | 47 | 1 | 11 | 113 | 40 | 143 | 2.72e-34 | 121 |
| Msa0783970 | AT4G00220.1 | 53.846 | 104 | 47 | 1 | 11 | 113 | 20 | 123 | 1.02e-33 | 119 |
| Msa0783970 | AT3G58190.1 | 47.244 | 127 | 59 | 3 | 8 | 132 | 11 | 131 | 2.88e-33 | 117 |
| Msa0783970 | AT5G06080.1 | 52.727 | 110 | 46 | 2 | 7 | 115 | 6 | 110 | 4.35e-32 | 113 |
| Msa0783970 | AT3G50510.1 | 47.573 | 103 | 54 | 0 | 6 | 108 | 10 | 112 | 4.22e-30 | 108 |
| Msa0783970 | AT3G50510.2 | 47.573 | 103 | 54 | 0 | 6 | 108 | 10 | 112 | 4.22e-30 | 108 |
| Msa0783970 | AT5G35900.1 | 42.718 | 103 | 59 | 0 | 9 | 111 | 6 | 108 | 1.66e-24 | 94.7 |
| Msa0783970 | AT3G47870.1 | 36.449 | 107 | 68 | 0 | 2 | 108 | 30 | 136 | 2.23e-23 | 94.4 |
| Msa0783970 | AT1G72980.1 | 39.130 | 115 | 69 | 1 | 4 | 117 | 9 | 123 | 3.09e-23 | 91.7 |
| Msa0783970 | AT3G13850.1 | 38.947 | 95 | 58 | 0 | 9 | 103 | 37 | 131 | 1.42e-21 | 88.6 |
| Msa0783970 | AT1G06280.1 | 45.455 | 77 | 42 | 0 | 9 | 85 | 25 | 101 | 2.50e-19 | 81.3 |
| Msa0783970 | AT2G19820.1 | 35.417 | 96 | 61 | 1 | 7 | 101 | 11 | 106 | 2.00e-16 | 71.6 |
| Msa0783970 | AT4G22700.1 | 36.634 | 101 | 62 | 2 | 9 | 108 | 6 | 105 | 2.62e-15 | 70.5 |
| Msa0783970 | AT5G15060.1 | 43.243 | 74 | 38 | 2 | 9 | 79 | 18 | 90 | 5.01e-14 | 65.9 |
| Msa0783970 | AT1G36000.1 | 29.348 | 92 | 65 | 0 | 3 | 94 | 4 | 95 | 8.15e-13 | 62.4 |
| Msa0783970 | AT2G19510.1 | 29.412 | 85 | 60 | 0 | 3 | 87 | 4 | 88 | 8.90e-11 | 57.0 |
| Msa0783970 | AT3G27940.3 | 25.000 | 160 | 106 | 4 | 3 | 155 | 1 | 153 | 9.43e-11 | 57.4 |
| Msa0783970 | AT3G27940.1 | 25.000 | 160 | 106 | 4 | 3 | 155 | 1 | 153 | 9.43e-11 | 57.4 |
| Msa0783970 | AT3G27940.2 | 25.000 | 160 | 106 | 4 | 3 | 155 | 1 | 153 | 9.43e-11 | 57.4 |
Find 23 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCACTCAATACCTTAATTA+TGG | 0.252400 | 5_2:+68297020 | Msa0783970:CDS |
| GCATCTGCTCTTTGGTGAAC+TGG | 0.276790 | 5_2:-68296780 | None:intergenic |
| TGTGAACTATAGCAAACTTT+TGG | 0.281566 | 5_2:-68295972 | None:intergenic |
| AATATCTTGCTTGCAAAATC+AGG | 0.298110 | 5_2:+68296869 | Msa0783970:CDS |
| TAGAAGAAGAACCATAATTA+AGG | 0.338211 | 5_2:-68297031 | None:intergenic |
| TGTTCACTGCATCTGCTCTT+TGG | 0.348086 | 5_2:-68296788 | None:intergenic |
| GCTCCAACACAGCCATAAAC+TGG | 0.374722 | 5_2:-68296846 | None:intergenic |
| TAATATGTATGGACATGATA+TGG | 0.378652 | 5_2:+68297088 | Msa0783970:CDS |
| TATAGTAAGATTTCTGATCT+TGG | 0.393066 | 5_2:-68296986 | None:intergenic |
| AGAGTGAGGGATCCAGTTTA+TGG | 0.403662 | 5_2:+68296834 | Msa0783970:CDS |
| TCTTGGTTGATTTGTGGTGT+TGG | 0.412347 | 5_2:-68296969 | None:intergenic |
| GGTTCATGAGAAGGAAAATA+AGG | 0.413213 | 5_2:-68295949 | None:intergenic |
| CTTAAGAGAGATAATATGTA+TGG | 0.442326 | 5_2:+68297077 | Msa0783970:CDS |
| TTCTGATCTTGGTTGATTTG+TGG | 0.443495 | 5_2:-68296975 | None:intergenic |
| GGTATTGAGTGAGTTCATCT+TGG | 0.445227 | 5_2:-68297010 | None:intergenic |
| CATCTGCTCTTTGGTGAACT+GGG | 0.459833 | 5_2:-68296779 | None:intergenic |
| GATCCAGTTTATGGCTGTGT+TGG | 0.485932 | 5_2:+68296843 | Msa0783970:CDS |
| CAATGTTAGCAAAATGCTGC+AGG | 0.541104 | 5_2:+68296011 | Msa0783970:CDS |
| AAAGTTTGCTATAGTTCACA+AGG | 0.604809 | 5_2:+68295975 | Msa0783970:CDS |
| AGAAGGAAAATAAGGAGCAA+AGG | 0.607624 | 5_2:-68295941 | None:intergenic |
| ATGAAGCAAATGCAAGAGTG+AGG | 0.619290 | 5_2:+68296820 | Msa0783970:CDS |
| AGAAGCTTGCATGAAGCACA+TGG | 0.628381 | 5_2:-68295892 | None:intergenic |
| TGAAGCAAATGCAAGAGTGA+GGG | 0.632506 | 5_2:+68296821 | Msa0783970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTTTTTTTTTTTTTATG+CGG | - | chr5_2:68296598-68296617 | None:intergenic | 10.0% |
| !!! | TTGTTTTTTTTTTTTTTATG+CGG | - | chr5_2:68296598-68296617 | None:intergenic | 10.0% |
| !!! | TAGTTTGTGAATAAAATATT+TGG | + | chr5_2:68296163-68296182 | Msa0783970:intron | 15.0% |
| !! | AGTTTGTGAATAAAATATTT+GGG | + | chr5_2:68296164-68296183 | Msa0783970:intron | 15.0% |
| !!! | TTTTTTATGTTTCTTACTTT+AGG | - | chr5_2:68296264-68296283 | None:intergenic | 15.0% |
| !! | TAATAGTAAACAACTAAAAA+AGG | - | chr5_2:68296322-68296341 | None:intergenic | 15.0% |
| !! | AAAAATACTAATCATTAGAA+AGG | - | chr5_2:68296468-68296487 | None:intergenic | 15.0% |
| !!! | TGACTTTAAATGATTTTTTT+TGG | + | chr5_2:68296741-68296760 | Msa0783970:intron | 15.0% |
| !!! | TAGTTTGTGAATAAAATATT+TGG | + | chr5_2:68296163-68296182 | Msa0783970:intron | 15.0% |
| !! | AGTTTGTGAATAAAATATTT+GGG | + | chr5_2:68296164-68296183 | Msa0783970:intron | 15.0% |
| !!! | TTTTTTATGTTTCTTACTTT+AGG | - | chr5_2:68296264-68296283 | None:intergenic | 15.0% |
| !! | TAATAGTAAACAACTAAAAA+AGG | - | chr5_2:68296322-68296341 | None:intergenic | 15.0% |
| !! | AAAAATACTAATCATTAGAA+AGG | - | chr5_2:68296468-68296487 | None:intergenic | 15.0% |
| !!! | TGACTTTAAATGATTTTTTT+TGG | + | chr5_2:68296741-68296760 | Msa0783970:intron | 15.0% |
| !!! | TTACTTTCTTTGATGATTAA+AGG | + | chr5_2:68296062-68296081 | Msa0783970:intron | 20.0% |
| !!! | TACTTTCTTTGATGATTAAA+GGG | + | chr5_2:68296063-68296082 | Msa0783970:intron | 20.0% |
| !! | TGTTTACTATTATAGTTATG+AGG | + | chr5_2:68296330-68296349 | Msa0783970:intron | 20.0% |
| !!! | TTTTTGTTTTTGCAATGTTA+AGG | + | chr5_2:68296412-68296431 | Msa0783970:intron | 20.0% |
| !! | TAAGTGTTTATTATTGTTCA+AGG | + | chr5_2:68296510-68296529 | Msa0783970:intron | 20.0% |
| !!! | TTTTTTTATGCGGAAAATTA+GGG | - | chr5_2:68296588-68296607 | None:intergenic | 20.0% |
| !!! | TTTTTTTTATGCGGAAAATT+AGG | - | chr5_2:68296589-68296608 | None:intergenic | 20.0% |
| !!! | TTTATCTTTTTTCGTAGAAT+CGG | + | chr5_2:68296682-68296701 | Msa0783970:intron | 20.0% |
| !!! | TTACTTTCTTTGATGATTAA+AGG | + | chr5_2:68296062-68296081 | Msa0783970:intron | 20.0% |
| !!! | TACTTTCTTTGATGATTAAA+GGG | + | chr5_2:68296063-68296082 | Msa0783970:intron | 20.0% |
| !! | TGTTTACTATTATAGTTATG+AGG | + | chr5_2:68296330-68296349 | Msa0783970:intron | 20.0% |
| !!! | TTTTTGTTTTTGCAATGTTA+AGG | + | chr5_2:68296412-68296431 | Msa0783970:intron | 20.0% |
| !! | TAAGTGTTTATTATTGTTCA+AGG | + | chr5_2:68296510-68296529 | Msa0783970:intron | 20.0% |
| !!! | TTTTTTTATGCGGAAAATTA+GGG | - | chr5_2:68296588-68296607 | None:intergenic | 20.0% |
| !!! | TTTTTTTTATGCGGAAAATT+AGG | - | chr5_2:68296589-68296608 | None:intergenic | 20.0% |
| !!! | TTTATCTTTTTTCGTAGAAT+CGG | + | chr5_2:68296682-68296701 | Msa0783970:intron | 20.0% |
| !! | TGTACTTATGTTTCTATTCA+AGG | + | chr5_2:68296122-68296141 | Msa0783970:intron | 25.0% |
| !!! | TTCTTACTTTAGGATGTTTT+AGG | - | chr5_2:68296254-68296273 | None:intergenic | 25.0% |
| ! | TTACTATTATAGTTATGAGG+AGG | + | chr5_2:68296333-68296352 | Msa0783970:intron | 25.0% |
| ! | ACAAAAATCACAATCAAATG+TGG | - | chr5_2:68296399-68296418 | None:intergenic | 25.0% |
| !!! | GATTTTTTTTGGTATGAATC+AGG | + | chr5_2:68296752-68296771 | Msa0783970:intron | 25.0% |
| ! | TATAGTAAGATTTCTGATCT+TGG | - | chr5_2:68296989-68297008 | None:intergenic | 25.0% |
| ! | TAGAAGAAGAACCATAATTA+AGG | - | chr5_2:68297034-68297053 | None:intergenic | 25.0% |
| ! | CTTAAGAGAGATAATATGTA+TGG | + | chr5_2:68297077-68297096 | Msa0783970:CDS | 25.0% |
| ! | TAATATGTATGGACATGATA+TGG | + | chr5_2:68297088-68297107 | Msa0783970:CDS | 25.0% |
| !! | TGTACTTATGTTTCTATTCA+AGG | + | chr5_2:68296122-68296141 | Msa0783970:intron | 25.0% |
| !!! | TTCTTACTTTAGGATGTTTT+AGG | - | chr5_2:68296254-68296273 | None:intergenic | 25.0% |
| ! | TTACTATTATAGTTATGAGG+AGG | + | chr5_2:68296333-68296352 | Msa0783970:intron | 25.0% |
| ! | ACAAAAATCACAATCAAATG+TGG | - | chr5_2:68296399-68296418 | None:intergenic | 25.0% |
| !!! | GATTTTTTTTGGTATGAATC+AGG | + | chr5_2:68296752-68296771 | Msa0783970:intron | 25.0% |
| ! | TATAGTAAGATTTCTGATCT+TGG | - | chr5_2:68296989-68297008 | None:intergenic | 25.0% |
| ! | TAGAAGAAGAACCATAATTA+AGG | - | chr5_2:68297034-68297053 | None:intergenic | 25.0% |
| ! | CTTAAGAGAGATAATATGTA+TGG | + | chr5_2:68297077-68297096 | Msa0783970:CDS | 25.0% |
| ! | TAATATGTATGGACATGATA+TGG | + | chr5_2:68297088-68297107 | Msa0783970:CDS | 25.0% |
| ! | TGAACTATAGCAAACTTTTG+GGG | - | chr5_2:68295973-68295992 | None:intergenic | 30.0% |
| ! | GTGAACTATAGCAAACTTTT+GGG | - | chr5_2:68295974-68295993 | None:intergenic | 30.0% |
| ! | TGTGAACTATAGCAAACTTT+TGG | - | chr5_2:68295975-68295994 | None:intergenic | 30.0% |
| !! | AAAGTTTGCTATAGTTCACA+AGG | + | chr5_2:68295975-68295994 | Msa0783970:CDS | 30.0% |
| AAGAACACAACAATTGATCA+CGG | - | chr5_2:68296657-68296676 | None:intergenic | 30.0% | |
| AATATCTTGCTTGCAAAATC+AGG | + | chr5_2:68296869-68296888 | Msa0783970:CDS | 30.0% | |
| CTCACTCAATACCTTAATTA+TGG | + | chr5_2:68297020-68297039 | Msa0783970:CDS | 30.0% | |
| ! | TGAACTATAGCAAACTTTTG+GGG | - | chr5_2:68295973-68295992 | None:intergenic | 30.0% |
| ! | GTGAACTATAGCAAACTTTT+GGG | - | chr5_2:68295974-68295993 | None:intergenic | 30.0% |
| ! | TGTGAACTATAGCAAACTTT+TGG | - | chr5_2:68295975-68295994 | None:intergenic | 30.0% |
| !! | AAAGTTTGCTATAGTTCACA+AGG | + | chr5_2:68295975-68295994 | Msa0783970:CDS | 30.0% |
| AAGAACACAACAATTGATCA+CGG | - | chr5_2:68296657-68296676 | None:intergenic | 30.0% | |
| AATATCTTGCTTGCAAAATC+AGG | + | chr5_2:68296869-68296888 | Msa0783970:CDS | 30.0% | |
| CTCACTCAATACCTTAATTA+TGG | + | chr5_2:68297020-68297039 | Msa0783970:CDS | 30.0% | |
| AGAAGGAAAATAAGGAGCAA+AGG | - | chr5_2:68295944-68295963 | None:intergenic | 35.0% | |
| GGTTCATGAGAAGGAAAATA+AGG | - | chr5_2:68295952-68295971 | None:intergenic | 35.0% | |
| ! | GCTATAGTTCACAAGGTTTT+TGG | + | chr5_2:68295982-68296001 | Msa0783970:CDS | 35.0% |
| CACAAACTATTCAACCTACA+AGG | - | chr5_2:68296152-68296171 | None:intergenic | 35.0% | |
| CTCTCTTGTTGAAGACATAT+TGG | + | chr5_2:68296624-68296643 | Msa0783970:intron | 35.0% | |
| !! | GTAGAATCGGACTTGTTATT+CGG | + | chr5_2:68296695-68296714 | Msa0783970:intron | 35.0% |
| !! | TTCTGATCTTGGTTGATTTG+TGG | - | chr5_2:68296978-68296997 | None:intergenic | 35.0% |
| AGAAGGAAAATAAGGAGCAA+AGG | - | chr5_2:68295944-68295963 | None:intergenic | 35.0% | |
| GGTTCATGAGAAGGAAAATA+AGG | - | chr5_2:68295952-68295971 | None:intergenic | 35.0% | |
| ! | GCTATAGTTCACAAGGTTTT+TGG | + | chr5_2:68295982-68296001 | Msa0783970:CDS | 35.0% |
| CACAAACTATTCAACCTACA+AGG | - | chr5_2:68296152-68296171 | None:intergenic | 35.0% | |
| CTCTCTTGTTGAAGACATAT+TGG | + | chr5_2:68296624-68296643 | Msa0783970:intron | 35.0% | |
| !! | GTAGAATCGGACTTGTTATT+CGG | + | chr5_2:68296695-68296714 | Msa0783970:intron | 35.0% |
| !! | TTCTGATCTTGGTTGATTTG+TGG | - | chr5_2:68296978-68296997 | None:intergenic | 35.0% |
| !!! | AACTTTTGGGGTTCATGAGA+AGG | - | chr5_2:68295961-68295980 | None:intergenic | 40.0% |
| CAATGTTAGCAAAATGCTGC+AGG | + | chr5_2:68296011-68296030 | Msa0783970:CDS | 40.0% | |
| CTATTCAAGGTTCACCTTGT+AGG | + | chr5_2:68296135-68296154 | Msa0783970:intron | 40.0% | |
| TTGCGACACAATCATGATTG+AGG | + | chr5_2:68296364-68296383 | Msa0783970:intron | 40.0% | |
| GTTAAGGATTGCAATACGAG+AGG | + | chr5_2:68296428-68296447 | Msa0783970:intron | 40.0% | |
| CAACAATTGATCACGGAGTT+GGG | - | chr5_2:68296650-68296669 | None:intergenic | 40.0% | |
| ACAACAATTGATCACGGAGT+TGG | - | chr5_2:68296651-68296670 | None:intergenic | 40.0% | |
| ATGAAGCAAATGCAAGAGTG+AGG | + | chr5_2:68296820-68296839 | Msa0783970:CDS | 40.0% | |
| TGAAGCAAATGCAAGAGTGA+GGG | + | chr5_2:68296821-68296840 | Msa0783970:CDS | 40.0% | |
| ! | TCACTTGCTCATTTTGCATC+TGG | - | chr5_2:68296947-68296966 | None:intergenic | 40.0% |
| !! | TCTTGGTTGATTTGTGGTGT+TGG | - | chr5_2:68296972-68296991 | None:intergenic | 40.0% |
| ! | GGTATTGAGTGAGTTCATCT+TGG | - | chr5_2:68297013-68297032 | None:intergenic | 40.0% |
| !!! | AACTTTTGGGGTTCATGAGA+AGG | - | chr5_2:68295961-68295980 | None:intergenic | 40.0% |
| CAATGTTAGCAAAATGCTGC+AGG | + | chr5_2:68296011-68296030 | Msa0783970:CDS | 40.0% | |
| CTATTCAAGGTTCACCTTGT+AGG | + | chr5_2:68296135-68296154 | Msa0783970:intron | 40.0% | |
| TTGCGACACAATCATGATTG+AGG | + | chr5_2:68296364-68296383 | Msa0783970:intron | 40.0% | |
| GTTAAGGATTGCAATACGAG+AGG | + | chr5_2:68296428-68296447 | Msa0783970:intron | 40.0% | |
| CAACAATTGATCACGGAGTT+GGG | - | chr5_2:68296650-68296669 | None:intergenic | 40.0% | |
| ACAACAATTGATCACGGAGT+TGG | - | chr5_2:68296651-68296670 | None:intergenic | 40.0% | |
| ATGAAGCAAATGCAAGAGTG+AGG | + | chr5_2:68296820-68296839 | Msa0783970:CDS | 40.0% | |
| TGAAGCAAATGCAAGAGTGA+GGG | + | chr5_2:68296821-68296840 | Msa0783970:CDS | 40.0% | |
| ! | TCACTTGCTCATTTTGCATC+TGG | - | chr5_2:68296947-68296966 | None:intergenic | 40.0% |
| !! | TCTTGGTTGATTTGTGGTGT+TGG | - | chr5_2:68296972-68296991 | None:intergenic | 40.0% |
| ! | GGTATTGAGTGAGTTCATCT+TGG | - | chr5_2:68297013-68297032 | None:intergenic | 40.0% |
| AGAAGCTTGCATGAAGCACA+TGG | - | chr5_2:68295895-68295914 | None:intergenic | 45.0% | |
| CATCTGCTCTTTGGTGAACT+GGG | - | chr5_2:68296782-68296801 | None:intergenic | 45.0% | |
| TGTTCACTGCATCTGCTCTT+TGG | - | chr5_2:68296791-68296810 | None:intergenic | 45.0% | |
| AGAGTGAGGGATCCAGTTTA+TGG | + | chr5_2:68296834-68296853 | Msa0783970:CDS | 45.0% | |
| GATCCAGTTTATGGCTGTGT+TGG | + | chr5_2:68296843-68296862 | Msa0783970:CDS | 45.0% | |
| AGAAGCTTGCATGAAGCACA+TGG | - | chr5_2:68295895-68295914 | None:intergenic | 45.0% | |
| CATCTGCTCTTTGGTGAACT+GGG | - | chr5_2:68296782-68296801 | None:intergenic | 45.0% | |
| TGTTCACTGCATCTGCTCTT+TGG | - | chr5_2:68296791-68296810 | None:intergenic | 45.0% | |
| AGAGTGAGGGATCCAGTTTA+TGG | + | chr5_2:68296834-68296853 | Msa0783970:CDS | 45.0% | |
| GATCCAGTTTATGGCTGTGT+TGG | + | chr5_2:68296843-68296862 | Msa0783970:CDS | 45.0% | |
| GCATCTGCTCTTTGGTGAAC+TGG | - | chr5_2:68296783-68296802 | None:intergenic | 50.0% | |
| GCTCCAACACAGCCATAAAC+TGG | - | chr5_2:68296849-68296868 | None:intergenic | 50.0% | |
| GCATCTGCTCTTTGGTGAAC+TGG | - | chr5_2:68296783-68296802 | None:intergenic | 50.0% | |
| GCTCCAACACAGCCATAAAC+TGG | - | chr5_2:68296849-68296868 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 68295871 | 68297118 | 68295871 | ID=Msa0783970;Name=Msa0783970 |
| chr5_2 | mRNA | 68295871 | 68297118 | 68295871 | ID=Msa0783970-mRNA-1;Parent=Msa0783970;Name=Msa0783970-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|1|1|1|2|0|168 |
| chr5_2 | exon | 68295871 | 68296032 | 68295871 | ID=Msa0783970-mRNA-1:exon:20463;Parent=Msa0783970-mRNA-1 |
| chr5_2 | exon | 68296774 | 68297118 | 68296774 | ID=Msa0783970-mRNA-1:exon:20464;Parent=Msa0783970-mRNA-1 |
| chr5_2 | CDS | 68295871 | 68296032 | 68295871 | ID=Msa0783970-mRNA-1:cds;Parent=Msa0783970-mRNA-1 |
| chr5_2 | CDS | 68296774 | 68297118 | 68296774 | ID=Msa0783970-mRNA-1:cds;Parent=Msa0783970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
