AlfalfaGEDB | Msa0784350

M. sativa cultivar zhongmu-4 / Msa0784350

KEGG: -
GO: GO:0000075 GO:0000166 GO:0000278 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005826 GO:0005856 GO:0005886 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008289 GO:0008360 GO:0008361 GO:0009898 GO:0009987 GO:0010389 GO:0010564 GO:0010948 GO:0010972 GO:0015629 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0019897 GO:0019898 GO:0022402 GO:0022603 GO:0022604 GO:0023052 GO:0030307 GO:0030427 GO:0030554 GO:0030863 GO:0030864 GO:0031234 GO:0031567 GO:0031569 GO:0032153 GO:0032155 GO:0032465 GO:0032535 GO:0032553 GO:0032555 GO:0032559 GO:0032878 GO:0032879 GO:0032880 GO:0032954 GO:0032956 GO:0032970 GO:0033036 GO:0033043 GO:0034613 GO:0035091 GO:0035556 GO:0035639 GO:0035839 GO:0036094 GO:0036211 GO:0040008 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044087 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044459 GO:0044464 GO:0045786 GO:0045927 GO:0045930 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048639 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051179 GO:0051285 GO:0051286 GO:0051302 GO:0051493 GO:0051510 GO:0051512 GO:0051516 GO:0051518 GO:0051519 GO:0051641 GO:0051716 GO:0051726 GO:0060341 GO:0065007 GO:0065008 GO:0070727 GO:0070938 GO:0071342 GO:0071704 GO:0071840 GO:0071944 GO:0072395 GO:0072413 GO:0072453 GO:0072471 GO:0090066 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0099568 GO:0099738 GO:0120105 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901648 GO:1901981 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902412 GO:1902471 GO:1902749 GO:1902750 GO:1903047 GO:1903066 GO:1903067 GO:1903076 GO:1903077 GO:1903436 GO:1903505 GO:1903827 GO:1903828 GO:1904375 GO:1904376 GO:1905475 GO:1905476 GO:2000073 GO:2000769
PFAM: PF00069.28

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0784350	sp\|Q09690\|POM1_SCHPO	38.154	325	192	4	384	706	679	996	3.05e-59	220

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0784350	A0A072UFT7	96.629	712	24	0	1	712	1	712	0.0	1432

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0784350	MtrunA17_Chr5g0437131	96.629	712	24	0	1	712	1	712	0.0	1432
Msa0784350	MtrunA17_Chr6g0480541	70.977	348	101	0	365	712	860	1207	0.0	553
Msa0784350	MtrunA17_Chr6g0480481	65.789	228	42	1	378	605	9	200	1.01e-100	308
Msa0784350	MtrunA17_Chr8g0369241	37.110	353	166	9	402	706	138	482	1.12e-57	211
Msa0784350	MtrunA17_Chr1g0210061	34.650	329	188	7	398	706	605	926	1.58e-49	187
Msa0784350	MtrunA17_Chr3g0139371	30.178	338	204	4	395	705	66	398	1.29e-44	165
Msa0784350	MtrunA17_Chr4g0058241	30.422	332	198	6	399	702	94	420	5.83e-44	164
Msa0784350	MtrunA17_Chr3g0116701	30.267	337	202	7	395	703	86	417	3.59e-41	155
Msa0784350	MtrunA17_Chr3g0123491	27.988	343	212	6	394	706	84	421	4.55e-37	144
Msa0784350	MtrunA17_Chr4g0065851	30.211	331	180	11	400	710	22	321	7.02e-32	131

Showing 1 to 10 of 114 entries

Previous1 2 3 4 5…12Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0784350	AT2G40120.1	78.402	338	73	0	369	706	227	564	0.0	579
Msa0784350	AT2G40120.1	46.237	186	75	7	3	186	1	163	6.63e-22	100
Msa0784350	AT1G73460.2	65.707	382	128	2	334	712	786	1167	5.81e-180	545
Msa0784350	AT1G73460.1	65.707	382	128	2	334	712	786	1167	5.81e-180	545
Msa0784350	AT1G73450.1	69.540	348	106	0	365	712	803	1150	6.48e-180	544
Msa0784350	AT3G17750.1	69.828	348	105	0	365	712	789	1136	7.45e-176	533
Msa0784350	AT5G35980.2	37.714	350	168	8	402	706	121	465	2.55e-58	211
Msa0784350	AT5G35980.3	37.714	350	168	8	402	706	86	430	4.11e-58	213
Msa0784350	AT5G35980.1	37.714	350	168	8	402	706	121	465	4.39e-58	213
Msa0784350	AT3G25840.2	34.328	335	181	8	398	706	350	671	9.24e-48	179

Showing 1 to 10 of 261 entries

Previous1 2 3 4 5…27Next

Find 162 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCAGTCCAGGTTCAGG+AGG	0.632418	5_2:+68919899	Msa0784350:CDS
AAATCAAACTCTGTTTCTTC+TGG	0.317003	5_2:+68918807	Msa0784350:CDS
AAATCTGGTCCATCAAAATC+AGG	0.444409	5_2:-68919623	None:intergenic
AAATCTTGCAATCACAATTT+TGG	0.158941	5_2:+68922243	Msa0784350:three_prime_UTR
AAATTCAACCAAGAATCTGG+TGG	0.683493	5_2:+68920888	Msa0784350:CDS
AACTTTGATGGTTAAGTCAT+AGG	0.346766	5_2:-68920071	None:intergenic
AAGAAGGCCTACTGCAAGAC+AGG	0.488234	5_2:+68922098	Msa0784350:CDS
AAGATTGATATATGGTCACT+CGG	0.613482	5_2:+68921296	Msa0784350:CDS
AATCGCGTGCTGTGCCGAAT+TGG	0.358187	5_2:-68919529	None:intergenic
AATGAGCGGAGTTTGACCGG+AGG	0.709108	5_2:-68918741	None:intergenic

Showing 1 to 10 of 162 entries

Previous1 2 3 4 5…17Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GATAATAATAAAGGTGGGAA+TGG	-	chr5_2:68918396-68918415	None:intergenic	30.0%
AGAGGGATAATAATAAAGGT+GGG	-	chr5_2:68918401-68918420	None:intergenic	30.0%
GAACAAGTTATAGAAGATGA+AGG	-	chr5_2:68918539-68918558	None:intergenic	30.0%
AGAAGAAACAGAGTTTGATT+TGG	-	chr5_2:68918808-68918827	None:intergenic	30.0%
GCAGAATTTATCAATCCATA+TGG	+	chr5_2:68919449-68919468	Msa0784350:intron	30.0%
GATGAGGAATTAATTCCATA+TGG	-	chr5_2:68919467-68919486	None:intergenic	30.0%
TCTGATAGATTATCCCAATT+CGG	+	chr5_2:68919515-68919534	Msa0784350:CDS	30.0%
ATATGCAACATGAACCATAT+TGG	+	chr5_2:68919564-68919583	Msa0784350:CDS	30.0%
TTCAAAAGATTATTGTCACG+GGG	+	chr5_2:68919832-68919851	Msa0784350:CDS	30.0%
TTAAGGTAGCTAAAGTTCAA+AGG	-	chr5_2:68919941-68919960	None:intergenic	30.0%

Showing 1 to 10 of 243 entries

Previous1 2 3 4 5…25Next

Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	68918295	68922587	68918295	ID=Msa0784350;Name=Msa0784350
chr5_2	mRNA	68918295	68922587	68918295	ID=Msa0784350-mRNA-1;Parent=Msa0784350;Name=Msa0784350-mRNA-1;_AED=0.08;_eAED=0.08;_QI=263\|1\|1\|1\|0.83\|0.71\|7\|423\|712
chr5_2	exon	68918295	68918308	68918295	ID=Msa0784350-mRNA-1:exon:20685;Parent=Msa0784350-mRNA-1
chr5_2	exon	68918330	68918891	68918330	ID=Msa0784350-mRNA-1:exon:20686;Parent=Msa0784350-mRNA-1
chr5_2	exon	68919453	68920284	68919453	ID=Msa0784350-mRNA-1:exon:20687;Parent=Msa0784350-mRNA-1
chr5_2	exon	68920554	68920941	68920554	ID=Msa0784350-mRNA-1:exon:20688;Parent=Msa0784350-mRNA-1
chr5_2	exon	68921071	68921349	68921071	ID=Msa0784350-mRNA-1:exon:20689;Parent=Msa0784350-mRNA-1
chr5_2	exon	68921487	68921630	68921487	ID=Msa0784350-mRNA-1:exon:20690;Parent=Msa0784350-mRNA-1
chr5_2	exon	68921982	68922587	68921982	ID=Msa0784350-mRNA-1:exon:20691;Parent=Msa0784350-mRNA-1
chr5_2	five_prime_UTR	68918295	68918308	68918295	ID=Msa0784350-mRNA-1:five_prime_utr;Parent=Msa0784350-mRNA-1
chr5_2	five_prime_UTR	68918330	68918578	68918330	ID=Msa0784350-mRNA-1:five_prime_utr;Parent=Msa0784350-mRNA-1
chr5_2	CDS	68918579	68918891	68918579	ID=Msa0784350-mRNA-1:cds;Parent=Msa0784350-mRNA-1
chr5_2	CDS	68919453	68920284	68919453	ID=Msa0784350-mRNA-1:cds;Parent=Msa0784350-mRNA-1
chr5_2	CDS	68920554	68920941	68920554	ID=Msa0784350-mRNA-1:cds;Parent=Msa0784350-mRNA-1
chr5_2	CDS	68921071	68921349	68921071	ID=Msa0784350-mRNA-1:cds;Parent=Msa0784350-mRNA-1
chr5_2	CDS	68921487	68921630	68921487	ID=Msa0784350-mRNA-1:cds;Parent=Msa0784350-mRNA-1
chr5_2	CDS	68921982	68922164	68921982	ID=Msa0784350-mRNA-1:cds;Parent=Msa0784350-mRNA-1
chr5_2	three_prime_UTR	68922165	68922587	68922165	ID=Msa0784350-mRNA-1:three_prime_utr;Parent=Msa0784350-mRNA-1

Gene Sequence

>Msa0784350

ATGGCTATGTCCAACAGTGTCGAAGCTGTGTTCGAATTTCTAAGAAAAAATGGATTATCAGAAGCAGAATCAGCTCTAAGACAAGACATCATTGATAAGAACAACAATGATCTTGCGAACTTTGACTACGAGAAATTCTTTTTTCCAATGGTTCCTCCACCTCCTCCGGTCAAACTCCGCTCATTTTCACGGCCGTCGGAGTTGACTTCCGGCGACGGTCAATTCTCCAAATCAAACTCTGTTTCTTCTGGAGAACAGTTTGTTAGCATCGGTTCTTCTACTTCTCCTTCTCGTTCTCGTGTTTCTTCTTCAGAATTTATCAATCCATATGGAATTAATTCCTCATCACAGACTCAGAATGATTCTGAATCTTCATCTGATAGATTATCCCAATTCGGCACAGCACGCGATTATCACGAATTCGATATGCAACATGAACCATATTGGTATAATGAAAACGATGACGATGATGATTTCATGACTCCTGATTTTGATGGACCAGATTTCTTTGGATGTCAAAGTGAAGATAAGTTTATCTTGAATTCAGAAACAGAAAATCAACAAGATGATTCTCGTGATCTTCGTTACGACTTTGAAGAAATTCAGTTAGAGGAAGATGAAGGTTACATAGACAAGTCAATGGAGCAATGCCTTTGTAATCATTCATCTGGAGGTGATGAAAATGCGACTTATTCAAAAGATTATTGTCACGGGGCCGAGAAAGACACTGTTGCACATAATTGTGAACTTCCATTTTGCAAAAGCAGTCCAGGTTCAGGAGGTTCTTGTAGCGAGGATCCTTTGAACTTTAGCTACCTTAATTTGAAGGAAATTAAGCTGAATCTGAATGATTTTCATATGAAGGATATTAATTCGTTTGAGTCTGTTCCTGTGCTTACCATGAAGCATAGTTCAGATTGCTACAAGGATCCCTATGACTTAACCATCAAAGTTGTTGAAACAGATCTACTAAATGGGATCGAAAGCTATGGAGTAAGAGATGACCGAGATTTGAGTGAAGAACTCCATGTTCCGGAGGTTGCCGCAGATGGAGAGGATAATAATACTGATGATGACCTCTTAAAATACATTCAAGATGATGAATATGAAGTATTTGAGCTAAGAATTGTACATAGAAAGAACAGGACTGGATTTGAAGAAAACAAGGAAGTGCCAATTGTGCTCAACTCGGTCATGGCTGGAAGGTACTATGTGACAGAATATCTCGGTTCAGCTGCATTCAGTAGGGTTGTTCAAGCCCATGATCTTCAGATGGGAATCGATGTTTGTTTGAAGATTATTAAAAATGACAAGGATTTCTTTGATCAAAGCCTAGATGAAATCAAGCTTCTTAAACTTGTCAATAAGCATGACCCGGGAGATAAACACCACATACTGCGTCTTTATGACTATTTCTACCATCAGGAACATTTATTCATTGTGACCGAACTTCTGCGTGCAAACTTATATGAATTTCAGAAATTCAACCAAGAATCTGGTGGTGAAGCATATTTTACATTAAAGAGATTGCAGCTCATTACTCGACAATGTTTGGAGGCATTGCAATATTTGCATAACTTGGGAATTGTTCACTGCGACCTGAAGCCTGAAAACGTTCTAATCAAAAGTTACAAAAAATGTGAAATAAAGATTATTGATCTTGGAAGCAGTTGCTTTAAAACAGACAATCTGTGTCTATATGTACAATCTCGGTCTTATAGAGCTCCTGAAGTGATGTTAGGCCTTCAATATGATGAAAAGATTGATATATGGTCACTCGGCTGTATTTTGGCTGAGCTATGCTCCGGTGAAGTGCTCTTTCCAAATGATGCTGTTGTGATGATTCTTGCACGCATGATTGGAATGTTTGGTCCTTTTGATATGGAGATGTTGGTGAAAGGGCAGGAAACACACAAGTACTTCACCAAAGAATATGACATTTACTTCATAAACGAGGAGACAGATCAACTAGAGTACATAATTCCAGAAGAGACATCATTGGAGCACCACCTACAGGTCACTGATACTATGTTTATCGACTTTGTCAGTTACTTGCTTAACGTCGACCCCAAAAGAAGGCCTACTGCAAGACAGGCACTAAAACATCCATGGCTTTCCCATGTATACAAGTCCATGTAA

Protein sequence

>Msa0784350

MAMSNSVEAVFEFLRKNGLSEAESALRQDIIDKNNNDLANFDYEKFFFPMVPPPPPVKLRSFSRPSELTSGDGQFSKSNSVSSGEQFVSIGSSTSPSRSRVSSSEFINPYGINSSSQTQNDSESSSDRLSQFGTARDYHEFDMQHEPYWYNENDDDDDFMTPDFDGPDFFGCQSEDKFILNSETENQQDDSRDLRYDFEEIQLEEDEGYIDKSMEQCLCNHSSGGDENATYSKDYCHGAEKDTVAHNCELPFCKSSPGSGGSCSEDPLNFSYLNLKEIKLNLNDFHMKDINSFESVPVLTMKHSSDCYKDPYDLTIKVVETDLLNGIESYGVRDDRDLSEELHVPEVAADGEDNNTDDDLLKYIQDDEYEVFELRIVHRKNRTGFEENKEVPIVLNSVMAGRYYVTEYLGSAAFSRVVQAHDLQMGIDVCLKIIKNDKDFFDQSLDEIKLLKLVNKHDPGDKHHILRLYDYFYHQEHLFIVTELLRANLYEFQKFNQESGGEAYFTLKRLQLITRQCLEALQYLHNLGIVHCDLKPENVLIKSYKKCEIKIIDLGSSCFKTDNLCLYVQSRSYRAPEVMLGLQYDEKIDIWSLGCILAELCSGEVLFPNDAVVMILARMIGMFGPFDMEMLVKGQETHKYFTKEYDIYFINEETDQLEYIIPEETSLEHHLQVTDTMFIDFVSYLLNVDPKRRPTARQALKHPWLSHVYKSM*