Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0784870 | sp|Q84WU6|ARFQ_ARATH | 36.545 | 550 | 235 | 15 | 9 | 456 | 16 | 553 | 3.63e-96 | 304 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0784870 | G7KGW8 | 88.913 | 460 | 47 | 2 | 1 | 456 | 1 | 460 | 0.0 | 813 |
Gene ID | Type | Classification |
---|---|---|
Msa0784870 | TF | B3-ARF |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0784870 | MtrunA17_Chr5g0436761 | 88.913 | 460 | 47 | 2 | 1 | 456 | 1 | 460 | 0.0 | 813 |
Msa0784870 | MtrunA17_Chr5g0417281 | 52.756 | 508 | 178 | 10 | 8 | 456 | 7 | 511 | 1.05e-166 | 479 |
Msa0784870 | MtrunA17_Chr5g0424931 | 50.772 | 518 | 181 | 11 | 6 | 456 | 13 | 523 | 1.84e-160 | 464 |
Msa0784870 | MtrunA17_Chr5g0417211 | 54.409 | 465 | 140 | 8 | 1 | 456 | 1 | 402 | 5.83e-156 | 448 |
Msa0784870 | MtrunA17_Chr2g0289221 | 63.376 | 314 | 112 | 3 | 1 | 312 | 9 | 321 | 6.00e-139 | 403 |
Msa0784870 | MtrunA17_Chr1g0178011 | 47.957 | 465 | 206 | 13 | 1 | 452 | 1 | 442 | 8.63e-133 | 390 |
Msa0784870 | MtrunA17_Chr2g0277461 | 46.022 | 465 | 214 | 14 | 4 | 454 | 5 | 446 | 1.07e-114 | 344 |
Msa0784870 | MtrunA17_Chr5g0424741 | 40.232 | 517 | 217 | 15 | 5 | 434 | 5 | 516 | 6.19e-103 | 316 |
Msa0784870 | MtrunA17_Chr3g0115271 | 40.580 | 483 | 214 | 11 | 3 | 422 | 10 | 482 | 4.42e-99 | 308 |
Msa0784870 | MtrunA17_Chr5g0425261 | 47.671 | 365 | 167 | 10 | 6 | 357 | 6 | 359 | 5.02e-98 | 299 |
Msa0784870 | MtrunA17_Chr5g0424801 | 49.138 | 348 | 153 | 11 | 6 | 339 | 6 | 343 | 8.53e-98 | 298 |
Msa0784870 | MtrunA17_Chr2g0326761 | 38.972 | 467 | 204 | 13 | 9 | 409 | 8 | 459 | 1.01e-91 | 292 |
Msa0784870 | MtrunA17_Chr4g0028971 | 38.269 | 439 | 191 | 12 | 1 | 378 | 1 | 420 | 9.12e-84 | 271 |
Msa0784870 | MtrunA17_Chr1g0181211 | 39.163 | 406 | 179 | 11 | 9 | 353 | 24 | 422 | 4.39e-82 | 267 |
Msa0784870 | MtrunA17_Chr1g0199681 | 39.454 | 403 | 175 | 11 | 9 | 354 | 91 | 481 | 2.83e-80 | 262 |
Msa0784870 | MtrunA17_Chr7g0264171 | 37.071 | 437 | 195 | 13 | 9 | 377 | 28 | 452 | 2.67e-78 | 255 |
Msa0784870 | MtrunA17_Chr2g0277531 | 45.397 | 315 | 154 | 11 | 6 | 312 | 14 | 318 | 3.61e-77 | 243 |
Msa0784870 | MtrunA17_Chr7g0264161 | 41.534 | 313 | 148 | 9 | 22 | 312 | 2 | 301 | 1.24e-67 | 218 |
Msa0784870 | MtrunA17_Chr5g0425661 | 51.269 | 197 | 90 | 3 | 9 | 202 | 34 | 227 | 1.64e-59 | 195 |
Msa0784870 | MtrunA17_Chr5g0433301 | 34.316 | 373 | 195 | 12 | 9 | 349 | 21 | 375 | 3.00e-59 | 208 |
Msa0784870 | MtrunA17_Chr2g0285461 | 34.890 | 364 | 205 | 11 | 9 | 349 | 20 | 374 | 4.38e-59 | 208 |
Msa0784870 | MtrunA17_Chr4g0070181 | 33.028 | 436 | 239 | 14 | 9 | 401 | 20 | 445 | 1.18e-58 | 208 |
Msa0784870 | MtrunA17_Chr2g0301251 | 35.735 | 347 | 193 | 10 | 9 | 334 | 20 | 357 | 1.48e-58 | 207 |
Msa0784870 | MtrunA17_Chr3g0109391 | 33.967 | 368 | 203 | 11 | 9 | 349 | 23 | 377 | 3.58e-58 | 205 |
Msa0784870 | MtrunA17_Chr4g0009751 | 32.376 | 383 | 219 | 9 | 10 | 371 | 17 | 380 | 1.01e-57 | 201 |
Msa0784870 | MtrunA17_Chr8g0376771 | 34.986 | 363 | 205 | 11 | 9 | 349 | 20 | 373 | 7.08e-57 | 202 |
Msa0784870 | MtrunA17_Chr2g0282961 | 34.203 | 345 | 193 | 10 | 12 | 332 | 53 | 387 | 9.44e-56 | 195 |
Msa0784870 | MtrunA17_Chr1g0156321 | 33.421 | 380 | 207 | 14 | 9 | 366 | 40 | 395 | 3.45e-54 | 194 |
Msa0784870 | MtrunA17_Chr8g0385791 | 34.078 | 358 | 215 | 9 | 11 | 351 | 58 | 411 | 7.87e-54 | 192 |
Msa0784870 | MtrunA17_Chr7g0239061 | 34.091 | 352 | 193 | 12 | 12 | 338 | 14 | 351 | 2.29e-53 | 189 |
Msa0784870 | MtrunA17_Chr8g0389081 | 33.428 | 353 | 197 | 9 | 9 | 335 | 29 | 369 | 6.23e-52 | 188 |
Msa0784870 | MtrunA17_Chr8g0346711 | 34.393 | 346 | 202 | 11 | 12 | 340 | 29 | 366 | 1.52e-50 | 182 |
Msa0784870 | MtrunA17_Chr2g0326281 | 33.419 | 389 | 201 | 14 | 12 | 353 | 56 | 433 | 6.35e-50 | 181 |
Msa0784870 | MtrunA17_Chr4g0029671 | 34.959 | 369 | 209 | 10 | 12 | 353 | 54 | 418 | 1.12e-49 | 181 |
Msa0784870 | MtrunA17_Chr2g0276781 | 32.676 | 355 | 218 | 7 | 11 | 349 | 22 | 371 | 1.57e-49 | 179 |
Msa0784870 | MtrunA17_Chr4g0046371 | 32.665 | 349 | 197 | 11 | 12 | 332 | 38 | 376 | 4.62e-49 | 178 |
Msa0784870 | MtrunA17_Chr5g0425651 | 55.645 | 124 | 49 | 4 | 229 | 347 | 1 | 123 | 1.25e-34 | 125 |
Msa0784870 | MtrunA17_Chr5g0424791 | 39.865 | 148 | 77 | 4 | 60 | 205 | 11 | 148 | 3.05e-23 | 95.5 |
Msa0784870 | MtrunA17_Chr8g0356211 | 28.235 | 255 | 156 | 9 | 125 | 361 | 7 | 252 | 4.45e-21 | 93.6 |
Msa0784870 | MtrunA17_Chr5g0419861 | 39.167 | 120 | 64 | 5 | 44 | 158 | 6 | 121 | 1.76e-14 | 70.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0784870 | AT1G77850.1 | 36.545 | 550 | 235 | 15 | 9 | 456 | 16 | 553 | 3.69e-97 | 304 |
Msa0784870 | AT1G77850.2 | 36.545 | 550 | 235 | 15 | 9 | 456 | 16 | 553 | 5.78e-97 | 303 |
Msa0784870 | AT4G30080.1 | 40.750 | 400 | 175 | 11 | 9 | 354 | 16 | 407 | 8.77e-86 | 276 |
Msa0784870 | AT2G28350.2 | 39.901 | 406 | 176 | 11 | 9 | 354 | 7 | 404 | 6.68e-81 | 263 |
Msa0784870 | AT2G28350.1 | 39.901 | 406 | 176 | 11 | 9 | 354 | 7 | 404 | 1.12e-80 | 263 |
Msa0784870 | AT5G37020.2 | 34.048 | 373 | 196 | 12 | 9 | 349 | 19 | 373 | 6.68e-61 | 212 |
Msa0784870 | AT5G37020.1 | 34.048 | 373 | 196 | 12 | 9 | 349 | 19 | 373 | 1.01e-60 | 212 |
Msa0784870 | AT1G30330.1 | 35.054 | 368 | 199 | 11 | 9 | 349 | 20 | 374 | 5.79e-59 | 208 |
Msa0784870 | AT1G30330.3 | 35.054 | 368 | 199 | 11 | 9 | 349 | 22 | 376 | 6.28e-59 | 208 |
Msa0784870 | AT1G30330.2 | 35.054 | 368 | 199 | 11 | 9 | 349 | 22 | 376 | 6.28e-59 | 208 |
Msa0784870 | AT2G33860.1 | 33.693 | 371 | 209 | 11 | 12 | 355 | 54 | 414 | 4.87e-56 | 196 |
Msa0784870 | AT4G23980.1 | 32.353 | 374 | 219 | 12 | 12 | 362 | 12 | 374 | 2.50e-55 | 194 |
Msa0784870 | AT5G20730.1 | 35.014 | 357 | 183 | 9 | 9 | 334 | 21 | 359 | 3.60e-55 | 198 |
Msa0784870 | AT1G19220.1 | 35.244 | 349 | 192 | 10 | 9 | 334 | 20 | 357 | 3.76e-55 | 198 |
Msa0784870 | AT5G20730.3 | 35.014 | 357 | 183 | 9 | 9 | 334 | 21 | 359 | 4.22e-55 | 198 |
Msa0784870 | AT5G20730.2 | 35.294 | 357 | 181 | 10 | 9 | 334 | 21 | 358 | 5.32e-55 | 198 |
Msa0784870 | AT4G23980.2 | 32.432 | 370 | 216 | 12 | 12 | 358 | 12 | 370 | 8.01e-55 | 193 |
Msa0784870 | AT1G19850.2 | 35.616 | 365 | 198 | 12 | 4 | 345 | 36 | 386 | 1.01e-54 | 196 |
Msa0784870 | AT1G19850.1 | 35.616 | 365 | 198 | 12 | 4 | 345 | 47 | 397 | 1.04e-54 | 196 |
Msa0784870 | AT2G46530.1 | 32.768 | 354 | 215 | 7 | 12 | 349 | 21 | 367 | 2.27e-54 | 191 |
Msa0784870 | AT2G46530.3 | 32.768 | 354 | 215 | 7 | 12 | 349 | 42 | 388 | 4.03e-54 | 191 |
Msa0784870 | AT3G61830.1 | 32.895 | 380 | 213 | 13 | 12 | 370 | 25 | 383 | 9.00e-54 | 190 |
Msa0784870 | AT5G62000.2 | 32.115 | 383 | 235 | 10 | 1 | 364 | 52 | 428 | 3.74e-53 | 191 |
Msa0784870 | AT5G62000.5 | 32.115 | 383 | 235 | 10 | 1 | 364 | 52 | 428 | 3.74e-53 | 191 |
Msa0784870 | AT5G62000.3 | 32.115 | 383 | 235 | 10 | 1 | 364 | 52 | 428 | 3.74e-53 | 191 |
Msa0784870 | AT5G62000.1 | 32.115 | 383 | 235 | 10 | 1 | 364 | 52 | 428 | 3.74e-53 | 191 |
Msa0784870 | AT5G62000.4 | 32.115 | 383 | 235 | 10 | 1 | 364 | 52 | 428 | 4.26e-53 | 191 |
Msa0784870 | AT5G60450.2 | 35.310 | 371 | 200 | 13 | 7 | 343 | 28 | 392 | 1.25e-52 | 189 |
Msa0784870 | AT5G60450.1 | 35.754 | 358 | 198 | 12 | 12 | 343 | 65 | 416 | 2.52e-52 | 188 |
Msa0784870 | AT1G59750.4 | 32.213 | 357 | 219 | 8 | 11 | 349 | 21 | 372 | 1.60e-49 | 179 |
Msa0784870 | AT1G59750.2 | 32.213 | 357 | 219 | 8 | 11 | 349 | 21 | 372 | 1.77e-49 | 179 |
Msa0784870 | AT1G59750.1 | 32.213 | 357 | 219 | 8 | 11 | 349 | 21 | 372 | 1.82e-49 | 179 |
Msa0784870 | AT1G59750.3 | 32.213 | 357 | 219 | 8 | 11 | 349 | 21 | 372 | 1.82e-49 | 179 |
Msa0784870 | AT1G35520.1 | 32.637 | 383 | 215 | 14 | 12 | 369 | 27 | 391 | 3.44e-49 | 177 |
Msa0784870 | AT1G34310.1 | 30.217 | 460 | 273 | 15 | 9 | 438 | 24 | 465 | 6.02e-48 | 174 |
Msa0784870 | AT1G34410.1 | 30.217 | 460 | 267 | 20 | 12 | 438 | 27 | 465 | 6.36e-48 | 174 |
Msa0784870 | AT1G35240.1 | 32.597 | 362 | 206 | 12 | 12 | 351 | 27 | 372 | 2.62e-47 | 172 |
Msa0784870 | AT1G34170.1 | 32.759 | 348 | 197 | 11 | 7 | 332 | 20 | 352 | 1.56e-46 | 168 |
Msa0784870 | AT1G35540.1 | 32.456 | 342 | 194 | 10 | 12 | 332 | 27 | 352 | 1.06e-45 | 168 |
Msa0784870 | AT1G34390.1 | 32.143 | 364 | 203 | 13 | 12 | 351 | 27 | 370 | 1.19e-45 | 167 |
Msa0784870 | AT5G37020.3 | 36.614 | 254 | 135 | 8 | 114 | 349 | 33 | 278 | 6.21e-45 | 167 |
Msa0784870 | AT3G61830.2 | 32.827 | 329 | 184 | 11 | 59 | 370 | 24 | 332 | 1.07e-42 | 159 |
Msa0784870 | AT2G33860.2 | 34.749 | 259 | 147 | 8 | 114 | 355 | 4 | 257 | 3.22e-42 | 155 |
Msa0784870 | AT1G34170.2 | 32.258 | 341 | 182 | 11 | 7 | 332 | 20 | 326 | 2.06e-40 | 151 |
Msa0784870 | AT1G34170.3 | 32.258 | 341 | 182 | 11 | 7 | 332 | 20 | 326 | 7.19e-40 | 150 |
Msa0784870 | AT2G46530.2 | 33.735 | 249 | 145 | 6 | 114 | 349 | 39 | 280 | 4.41e-38 | 145 |
Msa0784870 | AT1G43950.1 | 33.810 | 210 | 117 | 8 | 12 | 213 | 27 | 222 | 1.24e-25 | 104 |
Msa0784870 | ATMG00940.1 | 35.915 | 142 | 75 | 6 | 173 | 308 | 13 | 144 | 7.33e-15 | 72.8 |
Find 104 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATCGTTCTATTAAGCTATT+TGG | 0.141873 | 5_2:+69630084 | Msa0784870:CDS |
ACTTAATATCATAGGTTAAC+TGG | 0.236448 | 5_2:+69629725 | Msa0784870:intron |
TCAAACTCTTTGAATGATAA+TGG | 0.239075 | 5_2:+69630012 | Msa0784870:CDS |
GTTGACACAAAGAAAATTAT+TGG | 0.252106 | 5_2:+69628215 | Msa0784870:CDS |
AGGGAGAGTGTTTCAGTGTT+AGG | 0.275479 | 5_2:-69627798 | None:intergenic |
AGAAAGCAATGCAGATTAAT+TGG | 0.291804 | 5_2:+69628450 | Msa0784870:CDS |
TCATCCATGGCGCATGCTTC+AGG | 0.334788 | 5_2:+69628574 | Msa0784870:CDS |
GGGAGAGTGTTTCAGTGTTA+GGG | 0.337715 | 5_2:-69627797 | None:intergenic |
GAAGTACCTGAGATGGCATT+TGG | 0.342208 | 5_2:-69628097 | None:intergenic |
TCGCCACCATGTTCGTCTTC+AGG | 0.356005 | 5_2:-69627960 | None:intergenic |
CGTTATGGAGGCAGCAGAAT+TGG | 0.366432 | 5_2:+69628343 | Msa0784870:CDS |
AAAACTTGAGAATTTAGTTT+CGG | 0.371328 | 5_2:-69627735 | None:intergenic |
GAAATCTATCTCTGGAATGA+TGG | 0.394806 | 5_2:-69629899 | None:intergenic |
GACCATAGAGGTTGCAGAAA+AGG | 0.403026 | 5_2:+69630110 | Msa0784870:CDS |
ATGCAGATTAATTGGCAATC+TGG | 0.403258 | 5_2:+69628458 | Msa0784870:CDS |
CATTATAATTCAACGACGTT+GGG | 0.403744 | 5_2:-69629933 | None:intergenic |
TACTCCAGTTAGTGGTGATT+AGG | 0.404311 | 5_2:-69628187 | None:intergenic |
GAGATGGCATTTGGGATTGT+AGG | 0.408681 | 5_2:-69628088 | None:intergenic |
GTTCGTCTTCAGGAACCTCC+TGG | 0.418069 | 5_2:-69627950 | None:intergenic |
GACACCTAATCACCACTAAC+TGG | 0.430030 | 5_2:+69628183 | Msa0784870:CDS |
ATTATCCGACGGCTAGTCAT+TGG | 0.433407 | 5_2:+69628396 | Msa0784870:CDS |
TGCCAAGGACTTACTTGACT+TGG | 0.438785 | 5_2:-69629772 | None:intergenic |
AATGCCATCTCAGGTACTTC+CGG | 0.446305 | 5_2:+69628100 | Msa0784870:CDS |
AAGAAATTGAAATCTATCTC+TGG | 0.446706 | 5_2:-69629907 | None:intergenic |
GTGGGTTTCTGAGGATCCAT+GGG | 0.447035 | 5_2:-69627660 | None:intergenic |
TCTCTCAATATTAGTTGATA+AGG | 0.450573 | 5_2:-69629875 | None:intergenic |
GGTGGGTTTCTGAGGATCCA+TGG | 0.451620 | 5_2:-69627661 | None:intergenic |
AAAATCTGGCAGTGCTTGGC+CGG | 0.457026 | 5_2:+69627696 | Msa0784870:CDS |
GAAAAGGATTTGCATGAGTC+TGG | 0.457998 | 5_2:+69630126 | Msa0784870:CDS |
ACATTATAATTCAACGACGT+TGG | 0.460798 | 5_2:-69629934 | None:intergenic |
AGTGGTGATTAGGTGTCGCT+TGG | 0.461123 | 5_2:-69628177 | None:intergenic |
CGCCGTTATTAGCATCAGAC+TGG | 0.462930 | 5_2:-69628013 | None:intergenic |
AACGAACTTACTCCAGTTAG+TGG | 0.466764 | 5_2:-69628195 | None:intergenic |
GCAGTGCTTGGCCGGACCAT+CGG | 0.467814 | 5_2:+69627704 | Msa0784870:CDS |
AAGTACCTGAGATGGCATTT+GGG | 0.471977 | 5_2:-69628096 | None:intergenic |
GGAGACGACGCAGGGAATGA+TGG | 0.473784 | 5_2:-69627838 | None:intergenic |
TGGGACGGTAACTATTGATA+AGG | 0.474951 | 5_2:-69627818 | None:intergenic |
TTCGTCTTCAGGAACCTCCT+GGG | 0.475543 | 5_2:-69627949 | None:intergenic |
GAAGACGAACATGGTGGCGA+TGG | 0.484572 | 5_2:+69627963 | Msa0784870:CDS |
TTGCATGAGTCTGGTATCAA+TGG | 0.486989 | 5_2:+69630135 | Msa0784870:CDS |
TTACTTTCCACTAGGTCACT+TGG | 0.487944 | 5_2:+69627758 | Msa0784870:CDS |
CAAAGAGTTTGAAGAAGTTG+AGG | 0.490741 | 5_2:-69630001 | None:intergenic |
GGGAATTGTAGAGGCAGTGC+TGG | 0.506901 | 5_2:-69629817 | None:intergenic |
ATCCAAGTCAAGTAAGTCCT+TGG | 0.516605 | 5_2:+69629770 | Msa0784870:CDS |
ATCAATTTCGCGCATTCAGA+AGG | 0.518250 | 5_2:-69628050 | None:intergenic |
CTTAATATCATAGGTTAACT+GGG | 0.520667 | 5_2:+69629726 | Msa0784870:intron |
GATAAAGATGAGATCTTCAT+CGG | 0.522227 | 5_2:+69628272 | Msa0784870:CDS |
ATCTCAGGTACTTCCGGTCA+AGG | 0.522977 | 5_2:+69628106 | Msa0784870:CDS |
GGGACGGTAACTATTGATAA+GGG | 0.523300 | 5_2:-69627817 | None:intergenic |
GGAGAGTGTTTCAGTGTTAG+GGG | 0.523480 | 5_2:-69627796 | None:intergenic |
AAATCTATCTCTGGAATGAT+GGG | 0.525326 | 5_2:-69629898 | None:intergenic |
AACTTTCGCCACACCTACCG+TGG | 0.527055 | 5_2:+69628149 | Msa0784870:CDS |
GTGGTGATTAGGTGTCGCTT+GGG | 0.529316 | 5_2:-69628176 | None:intergenic |
TCTTTGAATGATAATGGCAA+TGG | 0.529617 | 5_2:+69630018 | Msa0784870:CDS |
ACAATCCCAAATGCCATCTC+AGG | 0.537836 | 5_2:+69628091 | Msa0784870:CDS |
GCTATTTGGTAAGACCATAG+AGG | 0.550878 | 5_2:+69630098 | Msa0784870:CDS |
CTGATCCTTCTCATCATCCA+TGG | 0.552744 | 5_2:+69628561 | Msa0784870:CDS |
ATCAACGTGGGAGACGACGC+AGG | 0.552853 | 5_2:-69627847 | None:intergenic |
GAGACGACGCAGGGAATGAT+GGG | 0.554533 | 5_2:-69627837 | None:intergenic |
CAATTCTGCTGCCTCCATAA+CGG | 0.556885 | 5_2:-69628342 | None:intergenic |
GTGTTTCAGTGTTAGGGGAA+GGG | 0.557770 | 5_2:-69627791 | None:intergenic |
AGTGTTTCAGTGTTAGGGGA+AGG | 0.559827 | 5_2:-69627792 | None:intergenic |
TATGGAGGCAGCAGAATTGG+CGG | 0.563383 | 5_2:+69628346 | Msa0784870:CDS |
TAGTGCTGCTGCTAAGATAA+CGG | 0.564009 | 5_2:+69628313 | Msa0784870:CDS |
ACCCAGTCTGATGCTAATAA+CGG | 0.564837 | 5_2:+69628011 | Msa0784870:CDS |
TTCGTGAAAACCATTGGTGA+TGG | 0.572471 | 5_2:-69627922 | None:intergenic |
TGAAGTTATTTATTATCCGA+CGG | 0.573203 | 5_2:+69628385 | Msa0784870:CDS |
AAATTGTGGATGTCCTTGAC+CGG | 0.574466 | 5_2:-69628119 | None:intergenic |
AAGACGAACATGGTGGCGAT+GGG | 0.574954 | 5_2:+69627964 | Msa0784870:CDS |
CTTCTAACTCCCATCACCAA+TGG | 0.575065 | 5_2:+69627912 | Msa0784870:CDS |
TCTGGTATCAATGGAGAGGA+TGG | 0.577552 | 5_2:+69630144 | Msa0784870:CDS |
TCAACACGGGTGGGTTTCTG+AGG | 0.579497 | 5_2:-69627669 | None:intergenic |
GGGATTGTAGGTCAAGTGGC+GGG | 0.582541 | 5_2:-69628076 | None:intergenic |
ATTTGGGATTGTAGGTCAAG+TGG | 0.584928 | 5_2:-69628080 | None:intergenic |
AGATCTTCATCGGAATCCGC+AGG | 0.586965 | 5_2:+69628282 | Msa0784870:CDS |
GACACAAAGAAAATTATTGG+CGG | 0.588137 | 5_2:+69628218 | Msa0784870:CDS |
TGGGAGACCCACGGTAGGTG+TGG | 0.592829 | 5_2:-69628157 | None:intergenic |
TTTCGCGCATTCAGAAGGTA+CGG | 0.595810 | 5_2:-69628045 | None:intergenic |
ATGCGCCATGGATGATGAGA+AGG | 0.597068 | 5_2:-69628566 | None:intergenic |
GCATGTTCCAAGTGACCTAG+TGG | 0.597744 | 5_2:-69627765 | None:intergenic |
CATACCTGAAGCATGCGCCA+TGG | 0.607260 | 5_2:-69628578 | None:intergenic |
CAGCACTAAACTTGTGCCTG+CGG | 0.609461 | 5_2:-69628298 | None:intergenic |
TGGGATTGTAGGTCAAGTGG+CGG | 0.613260 | 5_2:-69628077 | None:intergenic |
GAAAGTTCCAAACAAAATTG+TGG | 0.613552 | 5_2:-69628133 | None:intergenic |
GAAATAAGTTCAATCTGCCA+AGG | 0.619391 | 5_2:-69629787 | None:intergenic |
TTGACCGGAAGTACCTGAGA+TGG | 0.633047 | 5_2:-69628104 | None:intergenic |
TAGAGGCAGTGCTGGAGTGT+GGG | 0.633339 | 5_2:-69629809 | None:intergenic |
TCGTCTTCAGGAACCTCCTG+GGG | 0.633759 | 5_2:-69627948 | None:intergenic |
TCGTGAAAACCATTGGTGAT+GGG | 0.637876 | 5_2:-69627921 | None:intergenic |
GGGATGTTCGTGAAAACCAT+TGG | 0.639089 | 5_2:-69627928 | None:intergenic |
ACTTTCGCCACACCTACCGT+GGG | 0.642314 | 5_2:+69628150 | Msa0784870:CDS |
GAGGTTCCTGAAGACGAACA+TGG | 0.649399 | 5_2:+69627954 | Msa0784870:CDS |
CGACGCAGGGAATGATGGGA+CGG | 0.650343 | 5_2:-69627833 | None:intergenic |
TCGCTTGGGAGACCCACGGT+AGG | 0.655585 | 5_2:-69628162 | None:intergenic |
GCCGTTATTAGCATCAGACT+GGG | 0.657933 | 5_2:-69628012 | None:intergenic |
ATCAGCTAAGAGATCAACGT+GGG | 0.664891 | 5_2:-69627859 | None:intergenic |
GTAGAGGCAGTGCTGGAGTG+TGG | 0.665724 | 5_2:-69629810 | None:intergenic |
TCAACGTGGGAGACGACGCA+GGG | 0.667679 | 5_2:-69627846 | None:intergenic |
TTACACCAATGACTAGCCGT+CGG | 0.681240 | 5_2:-69628401 | None:intergenic |
GGTGTCGCTTGGGAGACCCA+CGG | 0.696022 | 5_2:-69628166 | None:intergenic |
TGAGTCTGGTATCAATGGAG+AGG | 0.714673 | 5_2:+69630140 | Msa0784870:CDS |
CAGTCTGATGCTAATAACGG+CGG | 0.725163 | 5_2:+69628014 | Msa0784870:CDS |
GTTCCTGAAGACGAACATGG+TGG | 0.745591 | 5_2:+69627957 | Msa0784870:CDS |
GATCAGCTAAGAGATCAACG+TGG | 0.824076 | 5_2:-69627860 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTAAAATGTTCAAATTTAT+TGG | + | chr5_2:69628873-69628892 | Msa0784870:intron | 10.0% |
!! | TACAAATTATATTATCACAT+TGG | - | chr5_2:69628767-69628786 | None:intergenic | 15.0% |
!! | AATTTGTAAAATTATGACTA+AGG | + | chr5_2:69628779-69628798 | Msa0784870:intron | 15.0% |
!!! | TCTAAAAAAATGTTTTAGAA+GGG | - | chr5_2:69628904-69628923 | None:intergenic | 15.0% |
!!! | TAATTTTATATGTGCATAAT+CGG | + | chr5_2:69629472-69629491 | Msa0784870:intron | 15.0% |
!!! | TATGATATTAAGTTGAAAAA+CGG | - | chr5_2:69629718-69629737 | None:intergenic | 15.0% |
!!! | AAAACTTGAGAATTTAGTTT+CGG | - | chr5_2:69627738-69627757 | None:intergenic | 20.0% |
!!! | AGAATTTTTCATTAAAACGA+GGG | - | chr5_2:69628249-69628268 | None:intergenic | 20.0% |
!!! | TAGAATTTTTCATTAAAACG+AGG | - | chr5_2:69628250-69628269 | None:intergenic | 20.0% |
!!! | CTCTAAAAAAATGTTTTAGA+AGG | - | chr5_2:69628905-69628924 | None:intergenic | 20.0% |
!!! | CTTCTAAAACATTTTTTTAG+AGG | + | chr5_2:69628903-69628922 | Msa0784870:intron | 20.0% |
!! | GATAATAGGTGTAAATTAAA+GGG | - | chr5_2:69629086-69629105 | None:intergenic | 20.0% |
!! | AGATAATAGGTGTAAATTAA+AGG | - | chr5_2:69629087-69629106 | None:intergenic | 20.0% |
!! | AATTTGTCACAAAATATAAG+TGG | - | chr5_2:69629534-69629553 | None:intergenic | 20.0% |
!! | TAAATATAAGAATGTTGTAG+TGG | - | chr5_2:69629612-69629631 | None:intergenic | 20.0% |
!!! | GTTTTTCAACTTAATATCAT+AGG | + | chr5_2:69629717-69629736 | Msa0784870:intron | 20.0% |
!!! | AATTCTAAGCTTTTTTTGTT+GGG | - | chr5_2:69629842-69629861 | None:intergenic | 20.0% |
! | GTTGACACAAAGAAAATTAT+TGG | + | chr5_2:69628215-69628234 | Msa0784870:CDS | 25.0% |
! | TGAAGTTATTTATTATCCGA+CGG | + | chr5_2:69628385-69628404 | Msa0784870:CDS | 25.0% |
!!! | TCAGGTATGATTTCTTATTT+TGG | + | chr5_2:69628592-69628611 | Msa0784870:intron | 25.0% |
! | AACACGTTAATACGTTAATT+AGG | - | chr5_2:69629301-69629320 | None:intergenic | 25.0% |
!! | TATTGTAGGAAAAGCATATT+AGG | + | chr5_2:69629368-69629387 | Msa0784870:intron | 25.0% |
! | AAGATAATTTCACACTTACA+TGG | + | chr5_2:69629393-69629412 | Msa0784870:intron | 25.0% |
!!! | TATTAAGTTGAAAAACGGTA+AGG | - | chr5_2:69629713-69629732 | None:intergenic | 25.0% |
! | ACTTAATATCATAGGTTAAC+TGG | + | chr5_2:69629725-69629744 | Msa0784870:intron | 25.0% |
! | CTTAATATCATAGGTTAACT+GGG | + | chr5_2:69629726-69629745 | Msa0784870:intron | 25.0% |
!!! | ATTCTAAGCTTTTTTTGTTG+GGG | - | chr5_2:69629841-69629860 | None:intergenic | 25.0% |
!!! | CAATTCTAAGCTTTTTTTGT+TGG | - | chr5_2:69629843-69629862 | None:intergenic | 25.0% |
!! | TCTCTCAATATTAGTTGATA+AGG | - | chr5_2:69629878-69629897 | None:intergenic | 25.0% |
! | AAGAAATTGAAATCTATCTC+TGG | - | chr5_2:69629910-69629929 | None:intergenic | 25.0% |
! | TCAAACTCTTTGAATGATAA+TGG | + | chr5_2:69630012-69630031 | Msa0784870:CDS | 25.0% |
!!! | CAAGTTTTTTACTTTCCACT+AGG | + | chr5_2:69627750-69627769 | Msa0784870:CDS | 30.0% |
GAAAGTTCCAAACAAAATTG+TGG | - | chr5_2:69628136-69628155 | None:intergenic | 30.0% | |
GACACAAAGAAAATTATTGG+CGG | + | chr5_2:69628218-69628237 | Msa0784870:CDS | 30.0% | |
GATAAAGATGAGATCTTCAT+CGG | + | chr5_2:69628272-69628291 | Msa0784870:CDS | 30.0% | |
! | TAGTCATTGGTGTAATTTTG+TGG | + | chr5_2:69628409-69628428 | Msa0784870:CDS | 30.0% |
AGAAAGCAATGCAGATTAAT+TGG | + | chr5_2:69628450-69628469 | Msa0784870:CDS | 30.0% | |
! | AAGAGAAGCTCAATTTTTCA+AGG | + | chr5_2:69628521-69628540 | Msa0784870:CDS | 30.0% |
!! | AGAGAAGCTCAATTTTTCAA+GGG | + | chr5_2:69628522-69628541 | Msa0784870:CDS | 30.0% |
TTCCATAATTAGATGATGCA+TGG | + | chr5_2:69628700-69628719 | Msa0784870:intron | 30.0% | |
AACCATGCATCATCTAATTA+TGG | - | chr5_2:69628705-69628724 | None:intergenic | 30.0% | |
ATGAACGATGTGTATATATG+AGG | + | chr5_2:69629011-69629030 | Msa0784870:intron | 30.0% | |
TGGAAGAAACACAAGATAAT+AGG | - | chr5_2:69629100-69629119 | None:intergenic | 30.0% | |
ATAGTTACATATGAGACAGA+TGG | - | chr5_2:69629153-69629172 | None:intergenic | 30.0% | |
AACTATAAAGTTGCACACAT+TGG | + | chr5_2:69629167-69629186 | Msa0784870:intron | 30.0% | |
!!! | ACCTTTTCTATTGACTTCAA+AGG | + | chr5_2:69629244-69629263 | Msa0784870:intron | 30.0% |
!! | ACCTTTGAAGTCAATAGAAA+AGG | - | chr5_2:69629248-69629267 | None:intergenic | 30.0% |
! | AAGTGATTTACTCCAGTTTT+AGG | - | chr5_2:69629422-69629441 | None:intergenic | 30.0% |
!!! | TTCTAAGCTTTTTTTGTTGG+GGG | - | chr5_2:69629840-69629859 | None:intergenic | 30.0% |
AAAAAAGCTTAGAATTGCTC+AGG | + | chr5_2:69629846-69629865 | Msa0784870:CDS | 30.0% | |
AAAAAGCTTAGAATTGCTCA+GGG | + | chr5_2:69629847-69629866 | Msa0784870:CDS | 30.0% | |
!! | AAATCTATCTCTGGAATGAT+GGG | - | chr5_2:69629901-69629920 | None:intergenic | 30.0% |
CATTATAATTCAACGACGTT+GGG | - | chr5_2:69629936-69629955 | None:intergenic | 30.0% | |
ACATTATAATTCAACGACGT+TGG | - | chr5_2:69629937-69629956 | None:intergenic | 30.0% | |
!! | TGTTTTTCTTGATAGCATGA+AGG | + | chr5_2:69629954-69629973 | Msa0784870:CDS | 30.0% |
!! | GTTTTTCTTGATAGCATGAA+GGG | + | chr5_2:69629955-69629974 | Msa0784870:CDS | 30.0% |
!! | TCTTTGAATGATAATGGCAA+TGG | + | chr5_2:69630018-69630037 | Msa0784870:CDS | 30.0% |
!!! | GATTAACTTTTTTAGTGCTG+AGG | - | chr5_2:69630065-69630084 | None:intergenic | 30.0% |
CATCGTTCTATTAAGCTATT+TGG | + | chr5_2:69630084-69630103 | Msa0784870:CDS | 30.0% | |
! | CAGTTTTGCAAAGACTTCAT+CGG | - | chr5_2:69627892-69627911 | None:intergenic | 35.0% |
! | AGGACATCCACAATTTTGTT+TGG | + | chr5_2:69628126-69628145 | Msa0784870:CDS | 35.0% |
!! | GATAACGGAAAAATCCGTTA+TGG | + | chr5_2:69628328-69628347 | Msa0784870:CDS | 35.0% |
ATGCAGATTAATTGGCAATC+TGG | + | chr5_2:69628458-69628477 | Msa0784870:CDS | 35.0% | |
!!! | AAGCTCAATTTTTCAAGGGA+CGG | + | chr5_2:69628526-69628545 | Msa0784870:CDS | 35.0% |
! | AGTAGCTTTGCAACTAGTAT+AGG | + | chr5_2:69628734-69628753 | Msa0784870:intron | 35.0% |
TTGAGCACTCTTTCTTTGTT+AGG | - | chr5_2:69628820-69628839 | None:intergenic | 35.0% | |
TCAATCAAATGACTCTCTCA+CGG | + | chr5_2:69628836-69628855 | Msa0784870:intron | 35.0% | |
ATGTGTATATATGAGGCCAA+AGG | + | chr5_2:69629018-69629037 | Msa0784870:intron | 35.0% | |
ATATTTAAGGGGGTTCAAGA+TGG | - | chr5_2:69629120-69629139 | None:intergenic | 35.0% | |
TCTTGAACCCCCTTAAATAT+AGG | + | chr5_2:69629120-69629139 | Msa0784870:intron | 35.0% | |
CTTGAACCCCCTTAAATATA+GGG | + | chr5_2:69629121-69629140 | Msa0784870:intron | 35.0% | |
TACAAGCCCTATATTTAAGG+GGG | - | chr5_2:69629130-69629149 | None:intergenic | 35.0% | |
GTACAAGCCCTATATTTAAG+GGG | - | chr5_2:69629131-69629150 | None:intergenic | 35.0% | |
GGTACAAGCCCTATATTTAA+GGG | - | chr5_2:69629132-69629151 | None:intergenic | 35.0% | |
TGGTACAAGCCCTATATTTA+AGG | - | chr5_2:69629133-69629152 | None:intergenic | 35.0% | |
AAGGTTAATGTCTGAGTCAA+TGG | - | chr5_2:69629229-69629248 | None:intergenic | 35.0% | |
! | AGGTTTTTCATAAACCTACC+TGG | + | chr5_2:69629264-69629283 | Msa0784870:intron | 35.0% |
CCTAAAACATAGTACTCGAT+CGG | + | chr5_2:69629342-69629361 | Msa0784870:intron | 35.0% | |
GAAATAAGTTCAATCTGCCA+AGG | - | chr5_2:69629790-69629809 | None:intergenic | 35.0% | |
!! | GAAATCTATCTCTGGAATGA+TGG | - | chr5_2:69629902-69629921 | None:intergenic | 35.0% |
GTTGAGGCAGAAAAAAGATT+AGG | - | chr5_2:69629988-69630007 | None:intergenic | 35.0% | |
CAAAGAGTTTGAAGAAGTTG+AGG | - | chr5_2:69630004-69630023 | None:intergenic | 35.0% | |
!!! | AATGGCAATGGTTTTGTTGA+AGG | + | chr5_2:69630030-69630049 | Msa0784870:CDS | 35.0% |
!!! | TTTTTTAGTGCTGAGGTTGT+GGG | - | chr5_2:69630058-69630077 | None:intergenic | 35.0% |
!! | ATTTTTCGATCAACACGGGT+GGG | - | chr5_2:69627681-69627700 | None:intergenic | 40.0% |
!! | CCAGATTTTTCGATCAACAC+GGG | - | chr5_2:69627685-69627704 | None:intergenic | 40.0% |
!! | GCCAGATTTTTCGATCAACA+CGG | - | chr5_2:69627686-69627705 | None:intergenic | 40.0% |
!! | AGTTTCGGAATTTTGACCGA+TGG | - | chr5_2:69627723-69627742 | None:intergenic | 40.0% |
TTACTTTCCACTAGGTCACT+TGG | + | chr5_2:69627758-69627777 | Msa0784870:CDS | 40.0% | |
GGGACGGTAACTATTGATAA+GGG | - | chr5_2:69627820-69627839 | None:intergenic | 40.0% | |
TGGGACGGTAACTATTGATA+AGG | - | chr5_2:69627821-69627840 | None:intergenic | 40.0% | |
ATCAGCTAAGAGATCAACGT+GGG | - | chr5_2:69627862-69627881 | None:intergenic | 40.0% | |
! | TCGTGAAAACCATTGGTGAT+GGG | - | chr5_2:69627924-69627943 | None:intergenic | 40.0% |
TTCGTGAAAACCATTGGTGA+TGG | - | chr5_2:69627925-69627944 | None:intergenic | 40.0% | |
ACCCAGTCTGATGCTAATAA+CGG | + | chr5_2:69628011-69628030 | Msa0784870:CDS | 40.0% | |
ATCAATTTCGCGCATTCAGA+AGG | - | chr5_2:69628053-69628072 | None:intergenic | 40.0% | |
! | ATTTGGGATTGTAGGTCAAG+TGG | - | chr5_2:69628083-69628102 | None:intergenic | 40.0% |
AAGTACCTGAGATGGCATTT+GGG | - | chr5_2:69628099-69628118 | None:intergenic | 40.0% | |
AAATTGTGGATGTCCTTGAC+CGG | - | chr5_2:69628122-69628141 | None:intergenic | 40.0% | |
TACTCCAGTTAGTGGTGATT+AGG | - | chr5_2:69628190-69628209 | None:intergenic | 40.0% | |
AACGAACTTACTCCAGTTAG+TGG | - | chr5_2:69628198-69628217 | None:intergenic | 40.0% | |
! | TAGTGCTGCTGCTAAGATAA+CGG | + | chr5_2:69628313-69628332 | Msa0784870:CDS | 40.0% |
AACGGAAAAATCCGTTATGG+AGG | + | chr5_2:69628331-69628350 | Msa0784870:CDS | 40.0% | |
TGTATATATGAGGCCAAAGG+CGG | + | chr5_2:69629021-69629040 | Msa0784870:intron | 40.0% | |
! | CGGAGTCGACTTATATCTAA+GGG | + | chr5_2:69629041-69629060 | Msa0784870:intron | 40.0% |
GGTGTAAATTAAAGGGCTGA+GGG | - | chr5_2:69629079-69629098 | None:intergenic | 40.0% | |
AGGTGTAAATTAAAGGGCTG+AGG | - | chr5_2:69629080-69629099 | None:intergenic | 40.0% | |
GAGCATGCTGTCTAATAACA+TGG | + | chr5_2:69629189-69629208 | Msa0784870:intron | 40.0% | |
AATTAGGCAAGCAAAAAGCC+AGG | - | chr5_2:69629285-69629304 | None:intergenic | 40.0% | |
! | CCGATCGAGTACTATGTTTT+AGG | - | chr5_2:69629345-69629364 | None:intergenic | 40.0% |
!! | TACTCGATCGGTCTTATTGT+AGG | + | chr5_2:69629354-69629373 | Msa0784870:intron | 40.0% |
CTTACATGGTGTCCTAAAAC+TGG | + | chr5_2:69629407-69629426 | Msa0784870:intron | 40.0% | |
ATCCAAGTCAAGTAAGTCCT+TGG | + | chr5_2:69629770-69629789 | Msa0784870:CDS | 40.0% | |
! | TTTTGTTGGGGGAATTGTAG+AGG | - | chr5_2:69629829-69629848 | None:intergenic | 40.0% |
GGCAGAAAAAAGATTAGGCA+TGG | - | chr5_2:69629983-69630002 | None:intergenic | 40.0% | |
!!! | CTTTTTTAGTGCTGAGGTTG+TGG | - | chr5_2:69630059-69630078 | None:intergenic | 40.0% |
GCTATTTGGTAAGACCATAG+AGG | + | chr5_2:69630098-69630117 | Msa0784870:CDS | 40.0% | |
! | ATCCTTTTCTGCAACCTCTA+TGG | - | chr5_2:69630115-69630134 | None:intergenic | 40.0% |
GAAAAGGATTTGCATGAGTC+TGG | + | chr5_2:69630126-69630145 | Msa0784870:CDS | 40.0% | |
TTGCATGAGTCTGGTATCAA+TGG | + | chr5_2:69630135-69630154 | Msa0784870:CDS | 40.0% | |
!! | GATTTTTCGATCAACACGGG+TGG | - | chr5_2:69627682-69627701 | None:intergenic | 45.0% |
! | CCCGTGTTGATCGAAAAATC+TGG | + | chr5_2:69627682-69627701 | Msa0784870:CDS | 45.0% |
TCGAAAAATCTGGCAGTGCT+TGG | + | chr5_2:69627692-69627711 | Msa0784870:CDS | 45.0% | |
GTGTTTCAGTGTTAGGGGAA+GGG | - | chr5_2:69627794-69627813 | None:intergenic | 45.0% | |
AGTGTTTCAGTGTTAGGGGA+AGG | - | chr5_2:69627795-69627814 | None:intergenic | 45.0% | |
!! | GGAGAGTGTTTCAGTGTTAG+GGG | - | chr5_2:69627799-69627818 | None:intergenic | 45.0% |
!! | GGGAGAGTGTTTCAGTGTTA+GGG | - | chr5_2:69627800-69627819 | None:intergenic | 45.0% |
!! | AGGGAGAGTGTTTCAGTGTT+AGG | - | chr5_2:69627801-69627820 | None:intergenic | 45.0% |
GATCAGCTAAGAGATCAACG+TGG | - | chr5_2:69627863-69627882 | None:intergenic | 45.0% | |
CTTCTAACTCCCATCACCAA+TGG | + | chr5_2:69627912-69627931 | Msa0784870:CDS | 45.0% | |
GGGATGTTCGTGAAAACCAT+TGG | - | chr5_2:69627931-69627950 | None:intergenic | 45.0% | |
GCCGTTATTAGCATCAGACT+GGG | - | chr5_2:69628015-69628034 | None:intergenic | 45.0% | |
CAGTCTGATGCTAATAACGG+CGG | + | chr5_2:69628014-69628033 | Msa0784870:CDS | 45.0% | |
TTTCGCGCATTCAGAAGGTA+CGG | - | chr5_2:69628048-69628067 | None:intergenic | 45.0% | |
! | GAGATGGCATTTGGGATTGT+AGG | - | chr5_2:69628091-69628110 | None:intergenic | 45.0% |
ACAATCCCAAATGCCATCTC+AGG | + | chr5_2:69628091-69628110 | Msa0784870:CDS | 45.0% | |
! | GAAGTACCTGAGATGGCATT+TGG | - | chr5_2:69628100-69628119 | None:intergenic | 45.0% |
AATGCCATCTCAGGTACTTC+CGG | + | chr5_2:69628100-69628119 | Msa0784870:CDS | 45.0% | |
GACACCTAATCACCACTAAC+TGG | + | chr5_2:69628183-69628202 | Msa0784870:CDS | 45.0% | |
CAATTCTGCTGCCTCCATAA+CGG | - | chr5_2:69628345-69628364 | None:intergenic | 45.0% | |
! | ATTATCCGACGGCTAGTCAT+TGG | + | chr5_2:69628396-69628415 | Msa0784870:CDS | 45.0% |
! | TTACACCAATGACTAGCCGT+CGG | - | chr5_2:69628404-69628423 | None:intergenic | 45.0% |
CTGATCCTTCTCATCATCCA+TGG | + | chr5_2:69628561-69628580 | Msa0784870:CDS | 45.0% | |
ATCAAATGACTCTCTCACGG+TGG | + | chr5_2:69628839-69628858 | Msa0784870:intron | 45.0% | |
TCAAATGACTCTCTCACGGT+GGG | + | chr5_2:69628840-69628859 | Msa0784870:intron | 45.0% | |
! | ATATAAGTCGACTCCGCCTT+TGG | - | chr5_2:69629037-69629056 | None:intergenic | 45.0% |
! | GCGGAGTCGACTTATATCTA+AGG | + | chr5_2:69629040-69629059 | Msa0784870:intron | 45.0% |
TGCCAAGGACTTACTTGACT+TGG | - | chr5_2:69629775-69629794 | None:intergenic | 45.0% | |
GACCATAGAGGTTGCAGAAA+AGG | + | chr5_2:69630110-69630129 | Msa0784870:CDS | 45.0% | |
TGAGTCTGGTATCAATGGAG+AGG | + | chr5_2:69630140-69630159 | Msa0784870:CDS | 45.0% | |
TCTGGTATCAATGGAGAGGA+TGG | + | chr5_2:69630144-69630163 | Msa0784870:CDS | 45.0% | |
!! | AAAATTGAAAAAATAATATA+AGG | - | chr5_2:69629651-69629670 | None:intergenic | 5.0% |
AAAATCTGGCAGTGCTTGGC+CGG | + | chr5_2:69627696-69627715 | Msa0784870:CDS | 50.0% | |
!! | CGGAATTTTGACCGATGGTC+CGG | - | chr5_2:69627718-69627737 | None:intergenic | 50.0% |
GCATGTTCCAAGTGACCTAG+TGG | - | chr5_2:69627768-69627787 | None:intergenic | 50.0% | |
! | TGGTTTTCACGAACATCCCC+AGG | + | chr5_2:69627932-69627951 | Msa0784870:CDS | 50.0% |
! | TTTTCACGAACATCCCCAGG+AGG | + | chr5_2:69627935-69627954 | Msa0784870:CDS | 50.0% |
TTCGTCTTCAGGAACCTCCT+GGG | - | chr5_2:69627952-69627971 | None:intergenic | 50.0% | |
GAGGTTCCTGAAGACGAACA+TGG | + | chr5_2:69627954-69627973 | Msa0784870:CDS | 50.0% | |
GTTCCTGAAGACGAACATGG+TGG | + | chr5_2:69627957-69627976 | Msa0784870:CDS | 50.0% | |
! | AAGACGAACATGGTGGCGAT+GGG | + | chr5_2:69627964-69627983 | Msa0784870:CDS | 50.0% |
CGCCGTTATTAGCATCAGAC+TGG | - | chr5_2:69628016-69628035 | None:intergenic | 50.0% | |
TGGGATTGTAGGTCAAGTGG+CGG | - | chr5_2:69628080-69628099 | None:intergenic | 50.0% | |
!! | TTGACCGGAAGTACCTGAGA+TGG | - | chr5_2:69628107-69628126 | None:intergenic | 50.0% |
ATCTCAGGTACTTCCGGTCA+AGG | + | chr5_2:69628106-69628125 | Msa0784870:CDS | 50.0% | |
!! | GTGGTGATTAGGTGTCGCTT+GGG | - | chr5_2:69628179-69628198 | None:intergenic | 50.0% |
!! | AGTGGTGATTAGGTGTCGCT+TGG | - | chr5_2:69628180-69628199 | None:intergenic | 50.0% |
AGATCTTCATCGGAATCCGC+AGG | + | chr5_2:69628282-69628301 | Msa0784870:CDS | 50.0% | |
CAGCACTAAACTTGTGCCTG+CGG | - | chr5_2:69628301-69628320 | None:intergenic | 50.0% | |
CGTTATGGAGGCAGCAGAAT+TGG | + | chr5_2:69628343-69628362 | Msa0784870:CDS | 50.0% | |
TATGGAGGCAGCAGAATTGG+CGG | + | chr5_2:69628346-69628365 | Msa0784870:CDS | 50.0% | |
ATGCGCCATGGATGATGAGA+AGG | - | chr5_2:69628569-69628588 | None:intergenic | 50.0% | |
AGGCAAGCAAAAAGCCAGGT+AGG | - | chr5_2:69629281-69629300 | None:intergenic | 50.0% | |
! | TCAACACGGGTGGGTTTCTG+AGG | - | chr5_2:69627672-69627691 | None:intergenic | 55.0% |
GAGACGACGCAGGGAATGAT+GGG | - | chr5_2:69627840-69627859 | None:intergenic | 55.0% | |
TCGTCTTCAGGAACCTCCTG+GGG | - | chr5_2:69627951-69627970 | None:intergenic | 55.0% | |
GTTCGTCTTCAGGAACCTCC+TGG | - | chr5_2:69627953-69627972 | None:intergenic | 55.0% | |
TCGCCACCATGTTCGTCTTC+AGG | - | chr5_2:69627963-69627982 | None:intergenic | 55.0% | |
! | GAAGACGAACATGGTGGCGA+TGG | + | chr5_2:69627963-69627982 | Msa0784870:CDS | 55.0% |
!! | GGCGATGGGCTTGTTTTCTC+TGG | + | chr5_2:69627978-69627997 | Msa0784870:CDS | 55.0% |
GGGATTGTAGGTCAAGTGGC+GGG | - | chr5_2:69628079-69628098 | None:intergenic | 55.0% | |
AACTTTCGCCACACCTACCG+TGG | + | chr5_2:69628149-69628168 | Msa0784870:CDS | 55.0% | |
ACTTTCGCCACACCTACCGT+GGG | + | chr5_2:69628150-69628169 | Msa0784870:CDS | 55.0% | |
TCATCCATGGCGCATGCTTC+AGG | + | chr5_2:69628574-69628593 | Msa0784870:CDS | 55.0% | |
CATACCTGAAGCATGCGCCA+TGG | - | chr5_2:69628581-69628600 | None:intergenic | 55.0% | |
! | TAGAGGCAGTGCTGGAGTGT+GGG | - | chr5_2:69629812-69629831 | None:intergenic | 55.0% |
GGGAATTGTAGAGGCAGTGC+TGG | - | chr5_2:69629820-69629839 | None:intergenic | 55.0% | |
! | CGACGCAGGGAATGATGGGA+CGG | - | chr5_2:69627836-69627855 | None:intergenic | 60.0% |
GGAGACGACGCAGGGAATGA+TGG | - | chr5_2:69627841-69627860 | None:intergenic | 60.0% | |
TCAACGTGGGAGACGACGCA+GGG | - | chr5_2:69627849-69627868 | None:intergenic | 60.0% | |
ATCAACGTGGGAGACGACGC+AGG | - | chr5_2:69627850-69627869 | None:intergenic | 60.0% | |
! | GTAGAGGCAGTGCTGGAGTG+TGG | - | chr5_2:69629813-69629832 | None:intergenic | 60.0% |
GCAGTGCTTGGCCGGACCAT+CGG | + | chr5_2:69627704-69627723 | Msa0784870:CDS | 65.0% | |
TGGGAGACCCACGGTAGGTG+TGG | - | chr5_2:69628160-69628179 | None:intergenic | 65.0% | |
TCGCTTGGGAGACCCACGGT+AGG | - | chr5_2:69628165-69628184 | None:intergenic | 65.0% | |
!! | GGTGTCGCTTGGGAGACCCA+CGG | - | chr5_2:69628169-69628188 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_2 | gene | 69627663 | 69630176 | 69627663 | ID=Msa0784870;Name=Msa0784870 |
chr5_2 | mRNA | 69627663 | 69630176 | 69627663 | ID=Msa0784870-mRNA-1;Parent=Msa0784870;Name=Msa0784870-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|456 |
chr5_2 | exon | 69627663 | 69628595 | 69627663 | ID=Msa0784870-mRNA-1:exon:20945;Parent=Msa0784870-mRNA-1 |
chr5_2 | exon | 69629739 | 69630176 | 69629739 | ID=Msa0784870-mRNA-1:exon:20946;Parent=Msa0784870-mRNA-1 |
chr5_2 | CDS | 69627663 | 69628595 | 69627663 | ID=Msa0784870-mRNA-1:cds;Parent=Msa0784870-mRNA-1 |
chr5_2 | CDS | 69629739 | 69630176 | 69629739 | ID=Msa0784870-mRNA-1:cds;Parent=Msa0784870-mRNA-1 |
Gene Sequence |
Protein sequence |