AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0787690

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0787690 MtrunA17_Chr5g0445311 85.766 548 22 2 1 495 1 545 0.0 938
Msa0787690 MtrunA17_Chr3g0101131 59.826 575 134 8 15 495 24 595 0.0 632
Msa0787690 MtrunA17_Chr5g0432161 35.047 428 156 12 45 378 86 485 1.23e-52 187
Msa0787690 MtrunA17_Chr7g0243891 34.509 397 172 9 51 379 63 439 7.08e-52 184
Msa0787690 MtrunA17_Chr7g0243891 52.174 69 30 2 203 270 374 440 1.03e-12 70.5
Msa0787690 MtrunA17_Chr4g0042831 45.740 223 95 6 185 383 127 347 8.50e-51 177
Msa0787690 MtrunA17_Chr5g0418191 38.811 286 110 5 202 428 150 429 8.18e-49 173
Msa0787690 MtrunA17_Chr7g0263531 37.729 273 104 8 164 373 151 420 4.46e-44 160
Msa0787690 MtrunA17_Chr4g0004911 41.818 220 83 5 200 376 181 398 1.51e-43 160
Msa0787690 MtrunA17_Chr3g0079691 40.698 258 110 7 41 272 109 349 3.06e-39 151
Msa0787690 MtrunA17_Chr3g0079691 93.617 47 3 0 334 380 515 561 1.39e-21 98.6
Msa0787690 MtrunA17_Chr3g0079691 48.148 81 39 2 203 280 495 575 6.08e-14 74.3
Msa0787690 MtrunA17_Chr3g0106491 38.362 232 112 6 39 266 57 261 4.10e-31 125
Msa0787690 MtrunA17_Chr3g0106491 56.452 62 26 1 203 263 365 426 7.78e-14 73.9
Msa0787690 MtrunA17_Chr7g0218081 37.815 238 107 6 29 266 95 291 4.38e-31 125
Msa0787690 MtrunA17_Chr7g0218081 64.474 76 25 1 334 409 430 503 1.68e-21 97.4
Msa0787690 MtrunA17_Chr7g0218081 55.000 60 26 1 203 261 410 469 9.39e-13 70.5
Msa0787690 MtrunA17_Chr7g0249311 61.000 100 36 1 196 295 172 268 1.57e-29 122
Msa0787690 MtrunA17_Chr7g0249311 50.000 88 42 1 293 380 373 458 1.22e-17 86.3
Msa0787690 MtrunA17_Chr7g0249311 53.125 64 29 1 203 265 392 455 5.36e-13 71.6
Msa0787690 MtrunA17_Chr7g0249301 53.774 106 46 2 196 299 55 159 7.91e-27 111
Msa0787690 MtrunA17_Chr7g0249301 51.190 84 39 1 293 376 273 354 1.36e-17 84.7
Msa0787690 MtrunA17_Chr7g0249301 55.000 60 26 1 203 261 292 351 7.73e-13 70.1
Msa0787690 MtrunA17_Chr5g0447711 32.046 259 134 8 163 381 41 297 1.09e-25 107
Msa0787690 MtrunA17_Chr5g0432071 42.593 108 52 2 174 271 65 172 2.13e-21 92.4
Msa0787690 MtrunA17_Chr5g0447701 60.656 61 24 0 202 262 91 151 9.91e-20 91.3
Msa0787690 MtrunA17_Chr5g0447701 56.667 60 25 1 203 261 252 311 2.59e-14 74.7
Msa0787690 MtrunA17_Chr5g0447701 47.458 59 31 0 334 392 272 330 5.05e-11 64.3
Msa0787690 MtrunA17_Chr7g0270191 42.537 134 71 4 204 334 146 276 1.37e-17 83.2
Msa0787690 MtrunA17_Chr7g0270191 56.863 51 22 0 334 384 165 215 2.75e-11 64.3
Msa0787690 MtrunA17_Chr1g0194481 50.000 84 41 1 188 270 143 226 7.08e-17 81.6
Msa0787690 MtrunA17_Chr8g0386241 56.897 58 24 1 203 259 103 160 4.53e-16 76.3
Msa0787690 MtrunA17_Chr1g0188941 50.000 62 30 1 203 263 51 112 5.44e-16 73.9
Msa0787690 MtrunA17_Chr1g0188941 41.975 81 45 1 293 373 32 110 8.72e-14 67.8
Msa0787690 MtrunA17_Chr1g0188961 64.000 50 18 0 334 383 3 52 7.19e-16 72.0
Msa0787690 MtrunA17_Chr7g0224801 48.485 66 33 1 203 267 93 158 1.27e-15 74.7
Msa0787690 MtrunA17_Chr2g0294231 51.282 78 37 1 188 264 188 265 1.50e-15 78.2
Msa0787690 MtrunA17_Chr4g0068541 61.667 60 22 1 203 261 208 267 2.03e-15 78.2
Msa0787690 MtrunA17_Chr8g0335811 49.367 79 39 1 188 265 139 217 2.46e-15 75.5
Msa0787690 MtrunA17_Chr4g0074001 53.731 67 30 1 202 267 358 424 3.14e-15 78.2
Msa0787690 MtrunA17_Chr4g0074001 50.000 62 30 1 202 262 185 246 1.44e-12 69.7
Msa0787690 MtrunA17_Chr4g0074001 40.476 84 48 1 293 376 340 421 2.40e-11 65.9
Msa0787690 MtrunA17_Chr4g0051881 59.322 59 23 1 204 261 179 237 3.16e-15 77.0
Msa0787690 MtrunA17_Chr4g0051881 61.905 42 16 0 334 375 198 239 7.78e-11 63.5
Msa0787690 MtrunA17_Chr6g0468181 51.351 74 35 1 213 285 12 85 8.43e-15 70.9
Msa0787690 MtrunA17_Chr5g0418781 62.500 56 20 1 204 258 125 180 1.23e-14 74.3
Msa0787690 MtrunA17_Chr7g0248721 56.897 58 23 2 203 259 141 197 5.09e-14 71.2
Msa0787690 MtrunA17_Chr8g0383351 53.125 64 26 2 203 265 160 220 6.71e-14 71.2
Msa0787690 MtrunA17_Chr3g0129361 46.835 79 38 2 188 265 129 204 7.85e-14 70.9
Msa0787690 MtrunA17_Chr2g0284321 36.522 115 61 5 204 315 36 141 1.38e-13 70.1
Msa0787690 MtrunA17_Chr5g0443131 57.627 59 24 1 204 261 158 216 1.75e-13 71.2
Msa0787690 MtrunA17_Chr4g0009881 50.847 59 28 1 204 262 18 75 1.85e-13 67.0
Msa0787690 MtrunA17_Chr2g0288871 34.091 132 64 4 133 261 254 365 1.94e-13 72.8
Msa0787690 MtrunA17_Chr7g0238921 57.895 57 23 1 203 258 124 180 2.11e-13 71.2
Msa0787690 MtrunA17_Chr7g0270051 51.667 60 27 2 204 261 54 113 3.38e-12 67.0
Msa0787690 MtrunA17_Chr3g0129321 50.000 60 29 1 203 261 118 177 3.51e-12 65.5
Msa0787690 MtrunA17_Chr4g0001361 50.000 60 28 2 204 261 163 222 3.87e-12 67.4
Msa0787690 MtrunA17_Chr4g0051181 52.459 61 27 2 203 261 243 303 4.35e-12 68.2
Msa0787690 MtrunA17_Chr4g0075201 50.820 61 28 2 203 261 267 327 4.74e-12 68.2
Msa0787690 MtrunA17_Chr8g0347251 47.143 70 31 3 191 256 126 193 1.21e-11 66.2
Msa0787690 MtrunA17_Chr3g0126391 48.529 68 29 3 193 256 125 190 1.44e-11 65.9
Msa0787690 MtrunA17_Chr2g0333851 46.269 67 31 3 204 265 170 236 1.47e-11 65.5
Msa0787690 MtrunA17_Chr1g0150801 50.000 58 28 1 203 259 102 159 1.58e-11 62.8
Msa0787690 MtrunA17_Chr8g0387501 46.667 60 30 2 204 261 130 189 2.07e-11 64.7
Msa0787690 MtrunA17_Chr7g0216891 52.542 59 26 2 203 259 219 277 2.11e-11 66.2
Msa0787690 MtrunA17_Chr4g0060271 50.820 61 28 2 203 261 255 315 2.30e-11 66.2
Msa0787690 MtrunA17_Chr7g0275531 43.038 79 39 3 194 266 109 187 2.44e-11 65.1
Msa0787690 MtrunA17_Chr8g0387981 52.632 57 23 2 204 256 133 189 5.12e-11 64.3
Msa0787690 MtrunA17_Chr3g0136961 46.774 62 31 2 204 263 139 200 9.38e-11 62.8
Msa0787690 MtrunA17_Chr7g0270831 48.333 60 29 2 204 261 217 276 9.84e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0787690 AT4G26640.2 46.715 548 187 16 27 495 36 557 7.40e-133 396
Msa0787690 AT4G26640.7 45.872 545 186 16 32 495 1 517 1.99e-129 386
Msa0787690 AT4G26640.1 44.071 506 178 16 69 495 6 485 8.98e-109 332
Msa0787690 AT4G26640.5 48.378 370 93 12 202 495 34 381 1.18e-95 295
Msa0787690 AT4G26640.6 48.378 370 93 12 202 495 34 381 1.18e-95 295
Msa0787690 AT4G26640.4 48.378 370 93 12 202 495 34 381 1.18e-95 295
Msa0787690 AT4G26640.3 48.378 370 93 12 202 495 34 381 1.18e-95 295
Msa0787690 AT2G03340.1 32.767 412 183 9 28 382 109 483 7.43e-54 189
Msa0787690 AT5G07100.1 37.293 362 147 12 23 376 7 296 2.88e-51 177
Msa0787690 AT5G07100.2 49.730 185 83 5 200 376 21 203 8.16e-49 167
Msa0787690 AT5G07100.2 46.250 80 42 1 185 263 123 202 9.20e-13 68.2
Msa0787690 AT5G07100.4 49.730 185 83 5 200 376 21 203 8.16e-49 167
Msa0787690 AT5G07100.4 46.250 80 42 1 185 263 123 202 9.20e-13 68.2
Msa0787690 AT5G07100.5 49.730 185 83 5 200 376 21 203 8.16e-49 167
Msa0787690 AT5G07100.5 46.250 80 42 1 185 263 123 202 9.20e-13 68.2
Msa0787690 AT5G07100.3 49.730 185 83 5 200 376 21 203 8.16e-49 167
Msa0787690 AT5G07100.3 46.250 80 42 1 185 263 123 202 9.20e-13 68.2
Msa0787690 AT3G01080.2 47.549 204 71 5 202 373 204 403 1.09e-44 163
Msa0787690 AT3G01080.1 47.549 204 71 5 202 373 166 365 1.36e-44 162
Msa0787690 AT2G38470.1 38.403 263 89 6 189 380 168 428 1.71e-41 155
Msa0787690 AT5G56270.1 43.590 234 119 6 41 266 108 336 3.74e-40 154
Msa0787690 AT5G56270.1 54.762 84 36 1 293 376 468 549 2.28e-18 89.0
Msa0787690 AT5G56270.1 58.333 60 24 1 203 261 487 546 2.76e-14 75.9
Msa0787690 AT2G30250.1 38.428 229 86 4 200 375 163 389 3.74e-40 149
Msa0787690 AT2G30250.1 53.125 64 29 1 204 266 329 392 6.09e-12 67.8
Msa0787690 AT1G13960.1 36.015 261 104 11 15 266 86 292 1.59e-29 122
Msa0787690 AT1G13960.1 51.316 76 35 1 298 373 395 468 7.21e-16 80.5
Msa0787690 AT4G26440.1 36.885 244 89 7 39 281 77 256 9.43e-29 120
Msa0787690 AT4G26440.1 50.000 92 44 1 293 384 353 442 4.02e-16 81.6
Msa0787690 AT4G26440.1 45.263 95 49 1 186 277 355 449 1.42e-12 70.5
Msa0787690 AT3G01080.3 68.000 75 22 1 202 276 204 276 1.94e-27 112
Msa0787690 AT1G13960.2 73.846 65 17 0 202 266 75 139 6.23e-27 112
Msa0787690 AT1G13960.2 51.316 76 35 1 298 373 242 315 6.25e-16 79.7
Msa0787690 AT1G13960.2 36.747 166 91 6 125 288 186 339 1.95e-14 75.1
Msa0787690 AT2G37260.3 62.963 81 29 1 195 274 77 157 3.83e-26 109
Msa0787690 AT2G37260.3 74.359 39 10 0 334 372 289 327 1.19e-12 69.7
Msa0787690 AT2G37260.3 51.786 56 26 1 204 258 270 325 1.12e-11 66.6
Msa0787690 AT2G37260.2 62.963 81 29 1 195 274 75 155 4.01e-26 109
Msa0787690 AT2G37260.2 74.359 39 10 0 334 372 287 325 1.20e-12 69.7
Msa0787690 AT2G37260.2 51.786 56 26 1 204 258 268 323 1.11e-11 66.6
Msa0787690 AT2G37260.1 62.963 81 29 1 195 274 157 237 5.83e-26 110
Msa0787690 AT2G37260.1 74.359 39 10 0 334 372 369 407 1.83e-12 69.7
Msa0787690 AT2G37260.1 50.847 59 28 1 201 258 347 405 9.83e-12 67.4
Msa0787690 AT2G04880.2 50.435 115 48 2 204 318 112 217 1.18e-24 107
Msa0787690 AT2G04880.2 61.667 60 22 1 203 261 283 342 2.54e-17 84.7
Msa0787690 AT2G04880.2 65.957 47 16 0 334 380 303 349 2.39e-15 78.6
Msa0787690 AT2G04880.1 61.538 78 24 1 204 281 112 183 1.68e-24 106
Msa0787690 AT2G04880.1 61.667 60 22 1 203 261 307 366 3.26e-17 84.7
Msa0787690 AT2G04880.1 65.957 47 16 0 334 380 327 373 2.51e-15 79.0
Msa0787690 AT4G12020.6 39.726 146 80 3 197 334 462 607 1.54e-19 93.2
Msa0787690 AT4G12020.8 39.726 146 80 3 197 334 462 607 1.54e-19 93.2
Msa0787690 AT4G12020.10 39.726 146 80 3 197 334 462 607 1.61e-19 93.2
Msa0787690 AT4G12020.4 39.726 146 80 3 197 334 462 607 1.65e-19 93.2
Msa0787690 AT4G12020.3 39.726 146 80 3 197 334 462 607 1.66e-19 92.8
Msa0787690 AT4G12020.2 39.726 146 80 3 197 334 462 607 1.68e-19 92.8
Msa0787690 AT4G12020.1 39.726 146 80 3 197 334 462 607 1.69e-19 92.8
Msa0787690 AT4G12020.9 39.726 146 80 3 197 334 462 607 1.69e-19 92.8
Msa0787690 AT4G12020.7 39.726 146 80 3 197 334 462 607 1.87e-19 92.8
Msa0787690 AT4G12020.5 39.726 146 80 3 197 334 395 540 1.95e-19 92.8
Msa0787690 AT4G12020.11 39.726 146 80 3 197 334 462 607 2.84e-19 92.0
Msa0787690 AT2G46130.1 46.154 78 41 1 183 259 10 87 4.82e-16 74.3
Msa0787690 AT2G44745.1 51.389 72 34 1 188 258 130 201 4.18e-15 74.7
Msa0787690 AT5G13080.1 53.448 58 26 1 203 259 67 124 5.93e-15 72.4
Msa0787690 AT1G55600.1 56.667 60 25 1 203 261 307 366 1.05e-14 77.0
Msa0787690 AT1G29860.1 59.322 59 23 1 204 261 137 195 1.10e-14 75.1
Msa0787690 AT1G29860.1 63.415 41 15 0 334 374 156 196 9.31e-11 63.2
Msa0787690 AT4G18170.1 57.627 59 24 1 204 261 173 231 1.30e-14 75.1
Msa0787690 AT5G43290.1 45.045 111 50 5 157 258 62 170 1.48e-14 74.3
Msa0787690 AT3G01970.1 50.000 66 32 1 203 267 65 130 1.64e-14 71.2
Msa0787690 AT2G47260.1 50.000 78 38 1 204 280 175 252 1.68e-14 75.1
Msa0787690 AT5G49520.1 58.333 60 24 1 203 261 221 280 1.95e-14 75.5
Msa0787690 AT5G46350.1 53.731 67 28 2 204 269 184 248 2.97e-14 74.3
Msa0787690 AT1G69310.4 60.714 56 21 1 204 258 148 203 4.98e-14 73.2
Msa0787690 AT1G69310.2 60.714 56 21 1 204 258 148 203 4.98e-14 73.2
Msa0787690 AT1G69310.1 60.714 56 21 1 204 258 148 203 4.98e-14 73.2
Msa0787690 AT3G62340.1 56.667 60 25 1 203 261 118 177 5.61e-14 72.8
Msa0787690 AT4G30935.1 49.296 71 35 1 204 273 332 402 6.30e-14 74.3
Msa0787690 AT4G30935.1 49.180 61 31 0 202 262 167 227 7.77e-13 70.9
Msa0787690 AT4G30935.1 50.769 65 27 1 334 393 351 415 3.35e-12 68.9
Msa0787690 AT1G64000.1 51.724 58 27 1 203 259 114 171 6.61e-14 70.9
Msa0787690 AT5G41570.1 51.724 58 27 1 203 259 98 155 2.54e-13 68.9
Msa0787690 AT2G21900.1 50.000 60 29 1 203 261 109 168 3.06e-13 68.9
Msa0787690 AT4G23810.1 50.794 63 25 3 198 256 155 215 7.67e-13 70.1
Msa0787690 AT4G39410.1 43.023 86 45 2 188 272 208 290 3.56e-12 67.8
Msa0787690 AT1G68150.1 52.459 61 27 2 203 261 235 295 3.70e-12 68.2
Msa0787690 AT1G80840.1 24.545 220 125 5 57 261 13 206 5.63e-12 67.0
Msa0787690 AT4G11070.2 36.134 119 63 5 142 256 57 166 9.56e-12 66.2
Msa0787690 AT2G40740.1 47.059 68 29 3 193 256 166 230 1.05e-11 66.2
Msa0787690 AT1G69810.2 41.892 74 40 2 201 271 143 216 1.09e-11 66.6
Msa0787690 AT1G69810.1 41.892 74 40 2 201 271 201 274 1.22e-11 66.6
Msa0787690 AT4G11070.1 36.134 119 63 5 142 256 89 198 1.41e-11 65.9
Msa0787690 AT2G40740.3 47.059 68 29 3 193 256 175 239 1.46e-11 65.9
Msa0787690 AT1G62300.1 37.000 100 57 3 168 261 273 372 1.58e-11 67.0
Msa0787690 AT2G46130.2 42.308 78 40 2 183 259 10 83 1.69e-11 61.2
Msa0787690 AT5G26170.1 49.123 57 28 1 203 258 113 169 2.41e-11 62.8
Msa0787690 AT5G24110.1 48.276 58 26 2 203 256 113 170 2.77e-11 65.1
Msa0787690 AT1G29280.1 46.575 73 33 4 191 261 66 134 3.41e-11 64.3
Msa0787690 AT5G15130.2 50.820 61 28 2 203 261 185 245 4.14e-11 65.5
Msa0787690 AT5G15130.1 50.820 61 28 2 203 261 227 287 4.81e-11 65.5
Msa0787690 AT1G18860.1 52.459 61 27 2 203 261 239 299 5.14e-11 65.5
Msa0787690 AT5G52830.1 48.387 62 30 2 202 261 164 225 5.54e-11 64.7
Msa0787690 AT4G01720.1 49.180 61 29 2 203 261 239 299 9.66e-11 64.3

Find 156 sgRNAs with CRISPR-Local

Find 408 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGACAGACAAGAATAAAAT+TGG 0.229290 5_2:-73648954 Msa0787690:CDS
CGGTTGCTTGGTTGAGGTTT+AGG 0.244830 5_2:+73651113 None:intergenic
AAATGCTGCTATCCGAATTT+AGG 0.269734 5_2:-73648853 Msa0787690:CDS
TTCAATACCAGCACTGTTAA+TGG 0.270744 5_2:-73651707 Msa0787690:CDS
GGATACAATTGGCGAAAGTA+TGG 0.277636 5_2:-73651275 Msa0787690:CDS
CGATAACAGGGCATCTTCTT+TGG 0.279235 5_2:-73651048 Msa0787690:CDS
AACTGATTGCTCTGGACTAT+TGG 0.284827 5_2:+73650905 None:intergenic
TCAAGCTTTAAACTGTTCTA+TGG 0.285827 5_2:-73651771 Msa0787690:CDS
AATCACTGAGATAATATATA+AGG 0.289665 5_2:-73651150 Msa0787690:CDS
TACTGTAATAATAAATTTCA+TGG 0.302681 5_2:+73648638 None:intergenic
CACAAAGGCAACACTGCTAA+TGG 0.304713 5_2:-73651317 Msa0787690:CDS
TTGATTGCTATTCCTAAATT+CGG 0.328818 5_2:+73648841 None:intergenic
TCGAGAGTTAAGATAGAGAT+AGG 0.328824 5_2:+73653653 None:intergenic
CATTAGCAGTGTTGCCTTTG+TGG 0.336033 5_2:+73651318 None:intergenic
CTTTCCACGTGTTTCCTAAC+GGG 0.337493 5_2:+73649088 None:intergenic
AAGGAGAGAGATCCGATAAC+AGG 0.368713 5_2:-73651061 Msa0787690:CDS
CCCATTGATCCGAATCGAAC+TGG 0.370192 5_2:-73653578 Msa0787690:CDS
GCAGTGTTGCCTTTGTGGTT+AGG 0.370912 5_2:+73651323 None:intergenic
ATTATGAACAAACTTGAAAC+TGG 0.377335 5_2:+73648802 None:intergenic
CCCAGTTCGATTCGGATCAA+TGG 0.381738 5_2:+73653577 None:intergenic
CAAAGAAGATGCCCTGTTAT+CGG 0.382806 5_2:+73651049 None:intergenic
TTGAAGCATGCAGAAGTTAC+AGG 0.389514 5_2:+73651725 None:intergenic
TTTGAACAGGTGATGATGAT+AGG 0.389808 5_2:+73651393 None:intergenic
AACCATGGGAAGAATACTAA+TGG 0.391787 5_2:-73648663 Msa0787690:CDS
TAAACCACAAGATAGAAATA+TGG 0.401369 5_2:-73651660 Msa0787690:intron
AACTGTTCTATGGCTTCTGC+TGG 0.409079 5_2:-73651761 Msa0787690:CDS
TATGTTGTAATTACAGCTTT+CGG 0.411726 5_2:+73649052 None:intergenic
GTGTTTCCTAACGGGGCAAC+CGG 0.414596 5_2:+73649096 None:intergenic
TCTACTCAAGTGGAAGGTTC+AGG 0.415708 5_2:-73651485 Msa0787690:CDS
GATCCGAATCGAACTGGGTC+GGG 0.420694 5_2:-73653572 Msa0787690:CDS
ACCATGGGAAGAATACTAAT+GGG 0.424995 5_2:-73648662 Msa0787690:CDS
AACAGTTTAAAGCTTGAAGA+AGG 0.428892 5_2:+73651777 None:intergenic
TATCCATCATTTGATGATTG+AGG 0.434013 5_2:+73651293 None:intergenic
ATCTTCTCCATTAAATGAAA+AGG 0.439104 5_2:-73651444 Msa0787690:CDS
CGCTCCCGTCGATGTCAATT+CGG 0.440733 5_2:-73651351 Msa0787690:CDS
CTTCCCATGGTTTGTGAGCA+AGG 0.441194 5_2:+73648674 None:intergenic
GTATAGTCCGACGTCATTGT+TGG 0.442541 5_2:-73653465 Msa0787690:CDS
CCCCATTAGTATTCTTCCCA+TGG 0.444938 5_2:+73648661 None:intergenic
GAGTATCGGTTGCTTGGTTG+AGG 0.444969 5_2:+73651107 None:intergenic
ATCATCATCACCTGTTCAAA+TGG 0.445905 5_2:-73651390 Msa0787690:CDS
ACAAAGGCAACACTGCTAAT+GGG 0.447362 5_2:-73651316 Msa0787690:CDS
TTCATGTTTGAAAGAAGAAC+CGG 0.449237 5_2:+73653437 None:intergenic
CTCGAGATCGGAAGCTTCGC+CGG 0.450239 5_2:+73653515 None:intergenic
TGACCCGACCCAGTTCGATT+CGG 0.453678 5_2:+73653569 None:intergenic
ATCACTGAGATAATATATAA+GGG 0.454298 5_2:-73651149 Msa0787690:CDS
CAAATGCCGGTTGCCCCGTT+AGG 0.456890 5_2:-73649102 Msa0787690:CDS
CGAGAGTTAAGATAGAGATA+GGG 0.456970 5_2:+73653654 None:intergenic
GGGTGTCCCTTCGCCGGAGT+TGG 0.461210 5_2:+73653598 None:intergenic
CATCAAATGATGGATACAAT+TGG 0.461233 5_2:-73651286 Msa0787690:CDS
GACACAAATCCACCACCCTC+TGG 0.466726 5_2:+73650861 None:intergenic
GTTGCCACAACTGATTGCTC+TGG 0.469396 5_2:+73650897 None:intergenic
TGTCCCTTCGCCGGAGTTGG+TGG 0.471029 5_2:+73653601 None:intergenic
CCAGTTCGATTCGGATCAAT+GGG 0.472051 5_2:+73653578 None:intergenic
GACGTCATTGTTGGAGTCTC+CGG 0.473846 5_2:-73653456 Msa0787690:CDS
ATCAACCCCATCGTTTGTCC+TGG 0.474278 5_2:+73650836 None:intergenic
AACAGGGCATCTTCTTTGGC+TGG 0.474402 5_2:-73651044 Msa0787690:CDS
TCTTCTTTGGCTGGCCGAGA+TGG 0.475333 5_2:-73651035 Msa0787690:intron
ATTGTCTTCTTTGTCAGAGA+TGG 0.478079 5_2:+73653695 None:intergenic
CCAGCAGAGTATCGGTTGCT+TGG 0.481275 5_2:+73651101 None:intergenic
ACCACCACCAACTCCGGCGA+AGG 0.482330 5_2:-73653605 Msa0787690:CDS
GGTTCTTCTTTCAAACATGA+AGG 0.483334 5_2:-73653435 Msa0787690:intron
AATAACGGTTCAAATCCGTT+TGG 0.484421 5_2:-73648746 Msa0787690:CDS
ATACTATTAGTCTTGACCTT+GGG 0.486591 5_2:-73648922 Msa0787690:CDS
ATGGGAATCAGCTCCACGGC+TGG 0.488519 5_2:-73648899 Msa0787690:CDS
CCCTTCGCCGGAGTTGGTGG+TGG 0.489782 5_2:+73653604 None:intergenic
CTGGAACTAACCATTTGAAC+AGG 0.490509 5_2:+73651380 None:intergenic
AGATAGAGATAGGGGTATAA+TGG 0.492748 5_2:+73653663 None:intergenic
ATCAATGGGTGTCCCTTCGC+CGG 0.493461 5_2:+73653592 None:intergenic
GTTGAGCCTTCACCGACTAC+AGG 0.494072 5_2:-73651803 Msa0787690:CDS
ATCATACCTTTGCTTTGAGA+AGG 0.496147 5_2:+73650803 None:intergenic
ACATGGTTGTTGAAGTCTGC+AGG 0.496515 5_2:+73651518 None:intergenic
TCTAGAGAAAATAGAAATGA+TGG 0.497207 5_2:-73648722 Msa0787690:CDS
TCTTTCCACGTGTTTCCTAA+CGG 0.500924 5_2:+73649087 None:intergenic
GCTGTAATTACAACATATGA+AGG 0.501085 5_2:-73649046 Msa0787690:CDS
ATTACCATATTTCTATCTTG+TGG 0.504868 5_2:+73651656 None:intergenic
TATTACAAATGTACAAATGC+CGG 0.506175 5_2:-73649115 Msa0787690:CDS
AATGGAGAAGATCGAAATGA+TGG 0.509457 5_2:+73651455 None:intergenic
ATCGACGGGAGCGCTAGTGC+TGG 0.511862 5_2:+73651361 None:intergenic
TTTAGAACACCGTAGTATAC+CGG 0.512392 5_2:+73648767 None:intergenic
GATACTATTAGTCTTGACCT+TGG 0.514318 5_2:-73648923 Msa0787690:CDS
GAAGCAACCACCACCAACTC+CGG 0.517386 5_2:-73653611 Msa0787690:CDS
TGGCGGGTATATAGCTTCAA+AGG 0.528848 5_2:-73648573 Msa0787690:three_prime_UTR
ATTAGTCTTGACCTTGGGAT+GGG 0.529726 5_2:-73648917 Msa0787690:CDS
CAATGACGTCGGACTATACC+CGG 0.531619 5_2:+73653469 None:intergenic
GAGAGTTAAGATAGAGATAG+GGG 0.531870 5_2:+73653655 None:intergenic
CAAGTGGAAGGTTCAGGAAA+CGG 0.532286 5_2:-73651479 Msa0787690:CDS
TATTAGTCTTGACCTTGGGA+TGG 0.534330 5_2:-73648918 Msa0787690:CDS
TCATACCTTTGCTTTGAGAA+GGG 0.534797 5_2:+73650804 None:intergenic
TACTACGGTGTTCTAAATAA+CGG 0.535215 5_2:-73648761 Msa0787690:CDS
AGTAGTAGCCATGACATGGC+AGG 0.536137 5_2:-73648992 Msa0787690:CDS
GGGCCTCAATCATCAAATGA+TGG 0.539104 5_2:-73651296 Msa0787690:CDS
AATTAGATTGAAAGTCAACC+TGG 0.539594 5_2:+73648446 None:intergenic
ACGGCTGGAAATAGATCGAA+TGG 0.543020 5_2:-73648884 Msa0787690:CDS
ATTCGATCTATTTCCAGCCG+TGG 0.544228 5_2:+73648886 None:intergenic
TATAGTAGTAGTATTGATAG+TGG 0.547018 5_2:-73648471 Msa0787690:three_prime_UTR
GGTGGTTGCTTCCATTGTGA+CGG 0.547944 5_2:+73653622 None:intergenic
ATGCACGGCGACCTCGAGAT+CGG 0.549767 5_2:+73653503 None:intergenic
CCATTGATCCGAATCGAACT+GGG 0.550113 5_2:-73653577 Msa0787690:CDS
CCAAGCAACCGATACTCTGC+TGG 0.551219 5_2:-73651101 Msa0787690:CDS
AACAAATGATCTTAGTCCAG+AGG 0.561426 5_2:-73650877 Msa0787690:CDS
TGTCGACCAGGACAAACGAT+GGG 0.566577 5_2:-73650842 Msa0787690:CDS
TCATAATACTACCTCAGCTC+CGG 0.566675 5_2:-73648786 Msa0787690:CDS
TCATCCGAATTGACATCGAC+GGG 0.567171 5_2:+73651347 None:intergenic
AGGGACCCTGTAGTCGGTGA+AGG 0.567986 5_2:+73651797 None:intergenic
GATACAATTGGCGAAAGTAT+GGG 0.568812 5_2:-73651274 Msa0787690:CDS
ACAGTTTAAAGCTTGAAGAA+GGG 0.569142 5_2:+73651778 None:intergenic
GATCTTAGTCCAGAGGGTGG+TGG 0.572921 5_2:-73650870 Msa0787690:CDS
CGATAACATCGCCGTCACAA+TGG 0.574088 5_2:-73653633 Msa0787690:exon
AAGATACAAGCTGATGTCGC+CGG 0.575531 5_2:-73653534 Msa0787690:CDS
TGTCAGAGATGGTGAGAGAG+TGG 0.576790 5_2:+73653706 None:intergenic
CCACCACCAACTCCGGCGAA+GGG 0.580167 5_2:-73653604 Msa0787690:CDS
ACCTCAGCTCCGGTATACTA+CGG 0.581112 5_2:-73648776 Msa0787690:CDS
TGGGTCGGGTCAAAATTCAA+TGG 0.582215 5_2:-73653558 Msa0787690:CDS
GGAAATAGATCGAATGGGCA+AGG 0.582572 5_2:-73648878 Msa0787690:CDS
TCTAGCCGGTATTACCATCT+CGG 0.583473 5_2:+73651021 None:intergenic
GTAGTATTGATAGTGGCTCC+AGG 0.587040 5_2:-73648464 Msa0787690:three_prime_UTR
TAACAGAACCAGCAGAGTAT+CGG 0.592680 5_2:+73651093 None:intergenic
ATGATCCCTTCTCAAAGCAA+AGG 0.594522 5_2:-73650809 Msa0787690:intron
GTGGTGGATTTGTGTCGACC+AGG 0.597899 5_2:-73650854 Msa0787690:CDS
GTATCCTTGCTCACAAACCA+TGG 0.602949 5_2:-73648678 Msa0787690:CDS
TTGAGCCTTCACCGACTACA+GGG 0.605193 5_2:-73651802 Msa0787690:CDS
CCGTGCATCACAATACCCGC+CGG 0.606013 5_2:-73653488 Msa0787690:CDS
TTTCCACGTGTTTCCTAACG+GGG 0.607409 5_2:+73649089 None:intergenic
TGGAGCTGATTCCCATCCCA+AGG 0.608733 5_2:+73648906 None:intergenic
GAAATAGATCGAATGGGCAA+GGG 0.610553 5_2:-73648877 Msa0787690:CDS
CGTGCATCACAATACCCGCC+GGG 0.611416 5_2:-73653487 Msa0787690:CDS
TTGCATGTCCTGCCATGTCA+TGG 0.612210 5_2:+73648984 None:intergenic
CGGCTGGAAATAGATCGAAT+GGG 0.612520 5_2:-73648883 Msa0787690:CDS
TTCATCCGAATTGACATCGA+CGG 0.614196 5_2:+73651346 None:intergenic
TGATCCGAATCGAACTGGGT+CGG 0.615553 5_2:-73653573 Msa0787690:CDS
CGGCGAAGCTTCCGATCTCG+AGG 0.618256 5_2:-73653514 Msa0787690:CDS
ACAAATGATCTTAGTCCAGA+GGG 0.621953 5_2:-73650876 Msa0787690:CDS
TGGCTACTACTCCTTGCGGC+AGG 0.622630 5_2:+73649004 None:intergenic
GTGAGCAAGGATACGCGGAA+TGG 0.624598 5_2:+73648687 None:intergenic
ATCATGATGTACCTGCCGCA+AGG 0.626676 5_2:-73649015 Msa0787690:CDS
AGGAGAGAGATCCGATAACA+GGG 0.627701 5_2:-73651060 Msa0787690:CDS
TATCCTTGCTCACAAACCAT+GGG 0.628514 5_2:-73648677 Msa0787690:CDS
TAGTCCAGAGCAATCAGTTG+TGG 0.629779 5_2:-73650901 Msa0787690:CDS
TGAAGAAGGGACCCTGTAGT+CGG 0.633505 5_2:+73651791 None:intergenic
GTGTCGACCAGGACAAACGA+TGG 0.634168 5_2:-73650843 Msa0787690:CDS
AAGGAGTAGTAGCCATGACA+TGG 0.636348 5_2:-73648996 Msa0787690:CDS
CCGGCGGGTATTGTGATGCA+CGG 0.645844 5_2:+73653488 None:intergenic
ACCGTAGTATACCGGAGCTG+AGG 0.648503 5_2:+73648775 None:intergenic
GACGTCGGACTATACCCGGC+GGG 0.649873 5_2:+73653473 None:intergenic
GTCATGGCTACTACTCCTTG+CGG 0.655788 5_2:+73649000 None:intergenic
GGTTTGTGAGCAAGGATACG+CGG 0.665746 5_2:+73648682 None:intergenic
TGGGATGGGAATCAGCTCCA+CGG 0.679215 5_2:-73648903 Msa0787690:CDS
CCATGGGAAGAATACTAATG+GGG 0.691385 5_2:-73648661 Msa0787690:CDS
TCGGATGAACCTAACCACAA+AGG 0.702575 5_2:-73651332 Msa0787690:CDS
AATGATCTTAGTCCAGAGGG+TGG 0.710562 5_2:-73650873 Msa0787690:CDS
GTCGACCAGGACAAACGATG+GGG 0.711194 5_2:-73650841 Msa0787690:CDS
GGTTCTGTTATGTCTACACA+AGG 0.712252 5_2:-73651080 Msa0787690:CDS
TTGCCCCGTTAGGAAACACG+TGG 0.715334 5_2:-73649092 Msa0787690:CDS
GGAGACTCCAACAATGACGT+CGG 0.718780 5_2:+73653458 None:intergenic
TGACGTCGGACTATACCCGG+CGG 0.777943 5_2:+73653472 None:intergenic
GTACATTTGTAATAGCTGCG+CGG 0.802944 5_2:+73651224 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATTGAAAATGAAAAA+TGG - chr5_2:73648845-73648864 Msa0787690:CDS 10.0%
!! AAAAATTGAAAATGAAAAAT+GGG - chr5_2:73648846-73648865 Msa0787690:CDS 10.0%
!! AAAAAGTAGAAAATAAAAAA+TGG - chr5_2:73649160-73649179 Msa0787690:intron 10.0%
!! AAAAGTAGAAAATAAAAAAT+GGG - chr5_2:73649161-73649180 Msa0787690:intron 10.0%
!! ATAAGAATTTATAACTTTAT+AGG + chr5_2:73649470-73649489 None:intergenic 10.0%
!! TTATTTCAAAGAAAATAATT+TGG - chr5_2:73651229-73651248 Msa0787690:CDS 10.0%
!! AAAAATAAATTCTTTAACAA+AGG + chr5_2:73652762-73652781 None:intergenic 10.0%
!!! TAATAATCACTTTTTGTAAT+TGG - chr5_2:73648950-73648969 Msa0787690:CDS 15.0%
!!! ATAAAAAGATTGTATTTTGA+AGG - chr5_2:73649095-73649114 Msa0787690:CDS 15.0%
!! TAATTATCACTTTCTATAAA+TGG - chr5_2:73649278-73649297 Msa0787690:intron 15.0%
!!! TTTGTTTGATTTTGTTTTAA+CGG - chr5_2:73649735-73649754 Msa0787690:intron 15.0%
!!! TTTCCTTTTTTATTTGAAAT+CGG + chr5_2:73650095-73650114 None:intergenic 15.0%
!!! ATAAAAAAGGAAATATTTTC+AGG - chr5_2:73650102-73650121 Msa0787690:intron 15.0%
!! ATCTTATTATCATTCTTATT+TGG - chr5_2:73653052-73653071 Msa0787690:intron 15.0%
!! TACTGTAATAATAAATTTCA+TGG + chr5_2:73653562-73653581 None:intergenic 15.0%
!! ATAGTAAAAAATATGCACTT+TGG - chr5_2:73648818-73648837 Msa0787690:CDS 20.0%
!! AAAACAAAACATTCTACTTA+TGG + chr5_2:73648892-73648911 None:intergenic 20.0%
!!! AAGTAGAATGTTTTGTTTTT+TGG - chr5_2:73648893-73648912 Msa0787690:CDS 20.0%
!!! ACTGTTTTTTACTTACAATA+TGG - chr5_2:73648997-73649016 Msa0787690:CDS 20.0%
!!! CTGTTTTTTACTTACAATAT+GGG - chr5_2:73648998-73649017 Msa0787690:CDS 20.0%
!!! AAATACAATCTTTTTATGAC+TGG + chr5_2:73649092-73649111 None:intergenic 20.0%
!!! TTGTTTTTTGTTGCTAATTT+TGG - chr5_2:73649221-73649240 Msa0787690:intron 20.0%
!! AAGTGATAATTAACTCTAAT+GGG + chr5_2:73649270-73649289 None:intergenic 20.0%
!! AAAGTGATAATTAACTCTAA+TGG + chr5_2:73649271-73649290 None:intergenic 20.0%
!! TTTGATCCTTTATGTATTAA+TGG - chr5_2:73649550-73649569 Msa0787690:intron 20.0%
!!! AACTTTTCCAAGATTTTTTT+TGG - chr5_2:73649997-73650016 Msa0787690:intron 20.0%
!! ATTCCGATTTCAAATAAAAA+AGG - chr5_2:73650089-73650108 Msa0787690:intron 20.0%
!!! TTTGAAATCAGTAATAACTA+TGG + chr5_2:73650241-73650260 None:intergenic 20.0%
!!! ATAGTTATTACTGATTTCAA+AGG - chr5_2:73650240-73650259 Msa0787690:intron 20.0%
!! ACACTTTGATGAAAATAAAT+TGG - chr5_2:73650575-73650594 Msa0787690:intron 20.0%
!! AATCACTGAGATAATATATA+AGG - chr5_2:73651047-73651066 Msa0787690:CDS 20.0%
!! ATCACTGAGATAATATATAA+GGG - chr5_2:73651048-73651067 Msa0787690:CDS 20.0%
!!! TTTTTTATTGAGCAGAAAAA+TGG - chr5_2:73651474-73651493 Msa0787690:CDS 20.0%
!!! TGTTTTTTTTTTAAGGACAA+AGG + chr5_2:73652734-73652753 None:intergenic 20.0%
!!! GGACATATGTTTTTTTTTTA+AGG + chr5_2:73652741-73652760 None:intergenic 20.0%
!!! TCTTAATTTGTAGTGTTTAT+TGG - chr5_2:73652781-73652800 Msa0787690:intron 20.0%
!! GTATGTTTATAATCATTGAT+GGG + chr5_2:73652989-73653008 None:intergenic 20.0%
!! TGTATGTTTATAATCATTGA+TGG + chr5_2:73652990-73653009 None:intergenic 20.0%
!!! AAAAAATCTCATTTTCTGTA+AGG - chr5_2:73653649-73653668 Msa0787690:five_prime_UTR 20.0%
! AAGTGATTATTAACTCTAGT+GGG + chr5_2:73648942-73648961 None:intergenic 25.0%
! AAAGTGATTATTAACTCTAG+TGG + chr5_2:73648943-73648962 None:intergenic 25.0%
!!! TTTTTTACTTACAATATGGG+TGG - chr5_2:73649001-73649020 Msa0787690:CDS 25.0%
!!! TTTTGAAGGAGAATTTTCAA+AGG - chr5_2:73649109-73649128 Msa0787690:CDS 25.0%
!! TTTGAAGGAGAATTTTCAAA+GGG - chr5_2:73649110-73649129 Msa0787690:CDS 25.0%
! TTGTGTAATTGTGTTATCTT+AGG - chr5_2:73649135-73649154 Msa0787690:intron 25.0%
! AAACAACAACATTCTACTAA+TGG + chr5_2:73649207-73649226 None:intergenic 25.0%
! AGCAGCTAAAATTGTATATA+TGG - chr5_2:73649349-73649368 Msa0787690:intron 25.0%
! GCAGCTAAAATTGTATATAT+GGG - chr5_2:73649350-73649369 Msa0787690:intron 25.0%
! CAGCTAAAATTGTATATATG+GGG - chr5_2:73649351-73649370 Msa0787690:intron 25.0%
! TCCTTTATGTATTAATGGTT+AGG - chr5_2:73649555-73649574 Msa0787690:intron 25.0%
! ACCTAACCATTAATACATAA+AGG + chr5_2:73649559-73649578 None:intergenic 25.0%
!! TAATGAATCTTCCTTTTGAT+TGG - chr5_2:73649693-73649712 Msa0787690:intron 25.0%
! AAAATCAATCCACTAATCAT+TGG + chr5_2:73649832-73649851 None:intergenic 25.0%
! TGCTGAAAGAATATAGTATA+AGG - chr5_2:73649861-73649880 Msa0787690:intron 25.0%
! TGTCATAAAGATATGTGAAA+AGG - chr5_2:73649886-73649905 Msa0787690:intron 25.0%
! ATTCTGTGCTATATTCATAT+TGG - chr5_2:73649971-73649990 Msa0787690:intron 25.0%
! CTTGTAACCAAAAAAAATCT+TGG + chr5_2:73650007-73650026 None:intergenic 25.0%
! TTTGTTTATGCTCAATTGTA+GGG - chr5_2:73650138-73650157 Msa0787690:intron 25.0%
!!! TAAATCTACTAGGTTGTTTT+TGG - chr5_2:73650183-73650202 Msa0787690:intron 25.0%
! TAATACTAAACTACAATGCT+CGG + chr5_2:73650354-73650373 None:intergenic 25.0%
! TAAACCACAAGATAGAAATA+TGG - chr5_2:73650537-73650556 Msa0787690:intron 25.0%
!! ATTACCATATTTCTATCTTG+TGG + chr5_2:73650544-73650563 None:intergenic 25.0%
! TTAAAATGAGTGAATAGCAT+TGG + chr5_2:73650655-73650674 None:intergenic 25.0%
!! AATGCTATTCACTCATTTTA+AGG - chr5_2:73650654-73650673 Msa0787690:intron 25.0%
! ATCTTCTCCATTAAATGAAA+AGG - chr5_2:73650753-73650772 Msa0787690:intron 25.0%
! ATTCCAATCTATAAGAACAA+GGG + chr5_2:73651818-73651837 None:intergenic 25.0%
! AATTCCAATCTATAAGAACA+AGG + chr5_2:73651819-73651838 None:intergenic 25.0%
! GTTCTTATAGATTGGAATTA+AGG - chr5_2:73651820-73651839 Msa0787690:intron 25.0%
! GAAACTATAACTATTATCGT+CGG + chr5_2:73652027-73652046 None:intergenic 25.0%
! GACGATAATAGTTATAGTTT+CGG - chr5_2:73652026-73652045 Msa0787690:intron 25.0%
! ATCCTTCATTAAATAAGTTG+TGG - chr5_2:73652095-73652114 Msa0787690:intron 25.0%
! TTCCACAACTTATTTAATGA+AGG + chr5_2:73652100-73652119 None:intergenic 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG - chr5_2:73652447-73652466 Msa0787690:intron 25.0%
!! GTTTCTCTAATAGTTTTCTT+AGG + chr5_2:73652572-73652591 None:intergenic 25.0%
! AACCATTAGAAAAGATTTAG+AGG - chr5_2:73652589-73652608 Msa0787690:intron 25.0%
! TATAAACATACACTAACACA+TGG - chr5_2:73652998-73653017 Msa0787690:intron 25.0%
!! TATTATCATTCTTATTTGGC+AGG - chr5_2:73653056-73653075 Msa0787690:intron 25.0%
! TATTACAAATGTACAAATGC+CGG - chr5_2:73653082-73653101 Msa0787690:intron 25.0%
! TATGTTGTAATTACAGCTTT+CGG + chr5_2:73653148-73653167 None:intergenic 25.0%
!! TTGATTGCTATTCCTAAATT+CGG + chr5_2:73653359-73653378 None:intergenic 25.0%
! ATTATGAACAAACTTGAAAC+TGG + chr5_2:73653398-73653417 None:intergenic 25.0%
! TCTAGAGAAAATAGAAATGA+TGG - chr5_2:73653475-73653494 Msa0787690:CDS 25.0%
!!! TATAGTAGTAGTATTGATAG+TGG - chr5_2:73653726-73653745 Msa0787690:five_prime_UTR 25.0%
TTCATGTTTGAAAGAAGAAC+CGG + chr5_2:73648763-73648782 None:intergenic 30.0%
! TCAGTTTTCGAAGTGTAATT+TGG - chr5_2:73648785-73648804 Msa0787690:CDS 30.0%
GTAAAAAATATGCACTTTGG+AGG - chr5_2:73648821-73648840 Msa0787690:CDS 30.0%
CTAAAATTGTATATATGGGG+TGG - chr5_2:73649354-73649373 Msa0787690:intron 30.0%
CTTCCAAAAGATAACATTTG+AGG + chr5_2:73649389-73649408 None:intergenic 30.0%
! CTCAAATGTTATCTTTTGGA+AGG - chr5_2:73649387-73649406 Msa0787690:intron 30.0%
! TGTGCCTTAGAATTTTGTAT+TGG - chr5_2:73649588-73649607 Msa0787690:intron 30.0%
GCATCCAATACAAAATTCTA+AGG + chr5_2:73649595-73649614 None:intergenic 30.0%
GCTTAAACACTGTATTATGT+TGG - chr5_2:73649620-73649639 Msa0787690:intron 30.0%
CACTGTATTATGTTGGAATA+TGG - chr5_2:73649627-73649646 Msa0787690:intron 30.0%
TAGAAGAATCCAGATGTTAA+TGG - chr5_2:73649920-73649939 Msa0787690:intron 30.0%
ACAGATTAAGACCATTATTC+AGG + chr5_2:73649946-73649965 None:intergenic 30.0%
! CTTTGTTTATGCTCAATTGT+AGG - chr5_2:73650137-73650156 Msa0787690:intron 30.0%
! CAGATGATTTTGTATATGCT+CGG - chr5_2:73650212-73650231 Msa0787690:intron 30.0%
!! TCAATTGATTGCTGTTTGTT+TGG - chr5_2:73650263-73650282 Msa0787690:intron 30.0%
!! CAATTGATTGCTGTTTGTTT+GGG - chr5_2:73650264-73650283 Msa0787690:intron 30.0%
!! AATTGATTGCTGTTTGTTTG+GGG - chr5_2:73650265-73650284 Msa0787690:intron 30.0%
TATTTGTTTCATTGCTTTGC+AGG - chr5_2:73650372-73650391 Msa0787690:intron 30.0%
! ACAGTTTAAAGCTTGAAGAA+GGG + chr5_2:73650422-73650441 None:intergenic 30.0%
! AACAGTTTAAAGCTTGAAGA+AGG + chr5_2:73650423-73650442 None:intergenic 30.0%
!! TCAAGCTTTAAACTGTTCTA+TGG - chr5_2:73650426-73650445 Msa0787690:intron 30.0%
! GCTATCTCCTTTTCATTTAA+TGG + chr5_2:73650763-73650782 None:intergenic 30.0%
! TATCCATCATTTGATGATTG+AGG + chr5_2:73650907-73650926 None:intergenic 30.0%
!! CATCAAATGATGGATACAAT+TGG - chr5_2:73650911-73650930 Msa0787690:CDS 30.0%
TATGGGCAAAAACATGTTAA+AGG - chr5_2:73650940-73650959 Msa0787690:intron 30.0%
ATGGGCAAAAACATGTTAAA+GGG - chr5_2:73650941-73650960 Msa0787690:intron 30.0%
!!! AGTTTTTTCACTTCACAGTT+AGG + chr5_2:73651003-73651022 None:intergenic 30.0%
! AAGCAAAGGTATGATAGTTA+AGG - chr5_2:73651402-73651421 Msa0787690:CDS 30.0%
!! TATGAGCGAAGTTGATATAT+TGG - chr5_2:73651564-73651583 Msa0787690:intron 30.0%
!! GAAGTTGATATATTGGATGA+TGG - chr5_2:73651571-73651590 Msa0787690:intron 30.0%
TTCCAATCTATAAGAACAAG+GGG + chr5_2:73651817-73651836 None:intergenic 30.0%
! AACTTTTCAACGAGATTATG+AGG + chr5_2:73651880-73651899 None:intergenic 30.0%
AGAGAGATATTAAGGATAGA+TGG + chr5_2:73652132-73652151 None:intergenic 30.0%
! TCTACCAACTTTTCTACTAT+AGG + chr5_2:73652443-73652462 None:intergenic 30.0%
! GACCTCTAAATCTTTTCTAA+TGG + chr5_2:73652594-73652613 None:intergenic 30.0%
GTTCTATCAAAGACCATATT+TGG + chr5_2:73652629-73652648 None:intergenic 30.0%
TGGTCTTTGATAGAACATTA+TGG - chr5_2:73652633-73652652 Msa0787690:intron 30.0%
TCTTTGATAGAACATTATGG+CGG - chr5_2:73652636-73652655 Msa0787690:intron 30.0%
GCTGTAATTACAACATATGA+AGG - chr5_2:73653151-73653170 Msa0787690:intron 30.0%
TCGACAGACAAGAATAAAAT+TGG - chr5_2:73653243-73653262 Msa0787690:intron 30.0%
!! ATACTATTAGTCTTGACCTT+GGG - chr5_2:73653275-73653294 Msa0787690:intron 30.0%
! TACTACGGTGTTCTAAATAA+CGG - chr5_2:73653436-73653455 Msa0787690:CDS 30.0%
!!! CTATTTTCTCTAGAACCAAA+CGG + chr5_2:73653469-73653488 None:intergenic 30.0%
!!! AGTAGCATTGTGTTGTTTTT+TGG - chr5_2:73653604-73653623 Msa0787690:CDS 30.0%
AATTAGATTGAAAGTCAACC+TGG + chr5_2:73653754-73653773 None:intergenic 30.0%
ATTGTCTTCTTTGTCAGAGA+TGG + chr5_2:73648505-73648524 None:intergenic 35.0%
! AGATAGAGATAGGGGTATAA+TGG + chr5_2:73648537-73648556 None:intergenic 35.0%
GAGAGTTAAGATAGAGATAG+GGG + chr5_2:73648545-73648564 None:intergenic 35.0%
CGAGAGTTAAGATAGAGATA+GGG + chr5_2:73648546-73648565 None:intergenic 35.0%
TCGAGAGTTAAGATAGAGAT+AGG + chr5_2:73648547-73648566 None:intergenic 35.0%
GGTTCTTCTTTCAAACATGA+AGG - chr5_2:73648762-73648781 Msa0787690:CDS 35.0%
! TTTCGAAGTGTAATTTGGTG+AGG - chr5_2:73648790-73648809 Msa0787690:CDS 35.0%
! TTCGAAGTGTAATTTGGTGA+GGG - chr5_2:73648791-73648810 Msa0787690:CDS 35.0%
!! TGGTCTCAAATCTTAGCTTT+TGG - chr5_2:73649028-73649047 Msa0787690:CDS 35.0%
!! GGTCTCAAATCTTAGCTTTT+GGG - chr5_2:73649029-73649048 Msa0787690:CDS 35.0%
! TGGCCTCAAATGTTATCTTT+TGG - chr5_2:73649383-73649402 Msa0787690:intron 35.0%
!!! TCTTCCTTTTGATTGGTTTC+TGG - chr5_2:73649700-73649719 Msa0787690:intron 35.0%
!! TTGTTTTGTACTGCACTAAG+TGG - chr5_2:73649785-73649804 Msa0787690:intron 35.0%
AATGCTTTGCCAATGATTAG+TGG - chr5_2:73649820-73649839 Msa0787690:intron 35.0%
TTATTCAGGCCATTAACATC+TGG + chr5_2:73649932-73649951 None:intergenic 35.0%
GATGTTAATGGCCTGAATAA+TGG - chr5_2:73649932-73649951 Msa0787690:intron 35.0%
!! ATTGATTGCTGTTTGTTTGG+GGG - chr5_2:73650266-73650285 Msa0787690:intron 35.0%
TTCAATACCAGCACTGTTAA+TGG - chr5_2:73650490-73650509 Msa0787690:intron 35.0%
! GAGTAGATTTTTCGCTTACA+TGG + chr5_2:73650699-73650718 None:intergenic 35.0%
AAGCGAAAAATCTACTCAAG+TGG - chr5_2:73650702-73650721 Msa0787690:intron 35.0%
GAAAAATCTACTCAAGTGGA+AGG - chr5_2:73650706-73650725 Msa0787690:intron 35.0%
AATGGAGAAGATCGAAATGA+TGG + chr5_2:73650745-73650764 None:intergenic 35.0%
! TTTGAACAGGTGATGATGAT+AGG + chr5_2:73650807-73650826 None:intergenic 35.0%
ATCATCATCACCTGTTCAAA+TGG - chr5_2:73650807-73650826 Msa0787690:intron 35.0%
! GATACAATTGGCGAAAGTAT+GGG - chr5_2:73650923-73650942 Msa0787690:intron 35.0%
AACAAATGATCTTAGTCCAG+AGG - chr5_2:73651320-73651339 Msa0787690:CDS 35.0%
ACAAATGATCTTAGTCCAGA+GGG - chr5_2:73651321-73651340 Msa0787690:CDS 35.0%
!! TCATACCTTTGCTTTGAGAA+GGG + chr5_2:73651396-73651415 None:intergenic 35.0%
!! ATCATACCTTTGCTTTGAGA+AGG + chr5_2:73651397-73651416 None:intergenic 35.0%
ATAGTTAAGGCCAAATGTCT+AGG - chr5_2:73651415-73651434 Msa0787690:CDS 35.0%
TAGTTAAGGCCAAATGTCTA+GGG - chr5_2:73651416-73651435 Msa0787690:CDS 35.0%
TTGAGCAGAAAAATGGAACT+CGG - chr5_2:73651481-73651500 Msa0787690:CDS 35.0%
GTATATCCTCGCATGAAATT+AGG - chr5_2:73651648-73651667 Msa0787690:intron 35.0%
CTATTTCCTAATTTCATGCG+AGG + chr5_2:73651657-73651676 None:intergenic 35.0%
! ACTCACGTTACGGATTAAAT+TGG + chr5_2:73651698-73651717 None:intergenic 35.0%
AAGAAAAGAGACTCACGTTA+CGG + chr5_2:73651708-73651727 None:intergenic 35.0%
TACCATGAAGTTATGGGAAA+GGG + chr5_2:73651747-73651766 None:intergenic 35.0%
ATACCATGAAGTTATGGGAA+AGG + chr5_2:73651748-73651767 None:intergenic 35.0%
GAGTCATACCATGAAGTTAT+GGG + chr5_2:73651753-73651772 None:intergenic 35.0%
TGAGTCATACCATGAAGTTA+TGG + chr5_2:73651754-73651773 None:intergenic 35.0%
ACAAGATTGCGCGAATTATA+GGG + chr5_2:73651789-73651808 None:intergenic 35.0%
TACAAGATTGCGCGAATTAT+AGG + chr5_2:73651790-73651809 None:intergenic 35.0%
TCCAATCTATAAGAACAAGG+GGG + chr5_2:73651816-73651835 None:intergenic 35.0%
TAACTATTATCGTCGGATTC+AGG + chr5_2:73652020-73652039 None:intergenic 35.0%
! AAAGTACCACTTAAGCTGAA+AGG - chr5_2:73652236-73652255 Msa0787690:intron 35.0%
AACTTTCCTTTCAGCTTAAG+TGG + chr5_2:73652245-73652264 None:intergenic 35.0%
AGCTGAAAGGAAAGTTCTAT+CGG - chr5_2:73652249-73652268 Msa0787690:intron 35.0%
AGACTAGACATGATAGGATT+AGG - chr5_2:73652384-73652403 Msa0787690:intron 35.0%
AGCACCTATAGTAGAAAAGT+TGG - chr5_2:73652436-73652455 Msa0787690:intron 35.0%
TGGTAGAAAATAGGCTTAGA+TGG - chr5_2:73652456-73652475 Msa0787690:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG - chr5_2:73652461-73652480 Msa0787690:intron 35.0%
TTGATCTACACTTCTTACCA+CGG + chr5_2:73652513-73652532 None:intergenic 35.0%
! GGTAAGAAGTGTAGATCAAA+TGG - chr5_2:73652514-73652533 Msa0787690:intron 35.0%
! AAGAAGTGTAGATCAAATGG+AGG - chr5_2:73652517-73652536 Msa0787690:intron 35.0%
AGATTTAGAGGTCAATGAGT+TGG - chr5_2:73652601-73652620 Msa0787690:intron 35.0%
! CAATGAGTTGGATCCAAATA+TGG - chr5_2:73652613-73652632 Msa0787690:intron 35.0%
CAAGAGAATGTAACGCAAAT+TGG + chr5_2:73652829-73652848 None:intergenic 35.0%
TTGAAGCTTCAACAAAATCG+CGG - chr5_2:73652942-73652961 Msa0787690:intron 35.0%
!! TGATGGGTTTGACGAAATTA+CGG + chr5_2:73652973-73652992 None:intergenic 35.0%
!! GATACTATTAGTCTTGACCT+TGG - chr5_2:73653274-73653293 Msa0787690:intron 35.0%
AAATGCTGCTATCCGAATTT+AGG - chr5_2:73653344-73653363 Msa0787690:intron 35.0%
! TTTAGAACACCGTAGTATAC+CGG + chr5_2:73653433-73653452 None:intergenic 35.0%
AATAACGGTTCAAATCCGTT+TGG - chr5_2:73653451-73653470 Msa0787690:CDS 35.0%
AACCATGGGAAGAATACTAA+TGG - chr5_2:73653534-73653553 Msa0787690:CDS 35.0%
ACCATGGGAAGAATACTAAT+GGG - chr5_2:73653535-73653554 Msa0787690:CDS 35.0%
!!! AGCATTGTGTTGTTTTTTGG+CGG - chr5_2:73653607-73653626 Msa0787690:CDS 35.0%
AATTCGACACGAGACTAAAC+AGG + chr5_2:73649499-73649518 None:intergenic 40.0%
GAAGCCAGAAACCAATCAAA+AGG + chr5_2:73649707-73649726 None:intergenic 40.0%
! CGCTTGCTGATAAATCTACT+AGG - chr5_2:73650173-73650192 Msa0787690:intron 40.0%
TTGAAGCATGCAGAAGTTAC+AGG + chr5_2:73650475-73650494 None:intergenic 40.0%
! TTTTCTGCCATTAACAGTGC+TGG + chr5_2:73650500-73650519 None:intergenic 40.0%
CTGGAACTAACCATTTGAAC+AGG + chr5_2:73650820-73650839 None:intergenic 40.0%
TTCATCCGAATTGACATCGA+CGG + chr5_2:73650854-73650873 None:intergenic 40.0%
ACAAAGGCAACACTGCTAAT+GGG - chr5_2:73650881-73650900 Msa0787690:CDS 40.0%
GGATACAATTGGCGAAAGTA+TGG - chr5_2:73650922-73650941 Msa0787690:intron 40.0%
GTACATTTGTAATAGCTGCG+CGG + chr5_2:73650976-73650995 None:intergenic 40.0%
! CTTTTTGAACGCTCTCATGA+TGG - chr5_2:73651021-73651040 Msa0787690:intron 40.0%
TAACAGAACCAGCAGAGTAT+CGG + chr5_2:73651107-73651126 None:intergenic 40.0%
GGTTCTGTTATGTCTACACA+AGG - chr5_2:73651117-73651136 Msa0787690:CDS 40.0%
CAAAGAAGATGCCCTGTTAT+CGG + chr5_2:73651151-73651170 None:intergenic 40.0%
! AACTGATTGCTCTGGACTAT+TGG + chr5_2:73651295-73651314 None:intergenic 40.0%
ATGATCCCTTCTCAAAGCAA+AGG - chr5_2:73651388-73651407 Msa0787690:CDS 40.0%
CTGAAGAAACCCTAGACATT+TGG + chr5_2:73651428-73651447 None:intergenic 40.0%
TTCATGCGAGGATATACCTT+GGG + chr5_2:73651645-73651664 None:intergenic 40.0%
TTTCATGCGAGGATATACCT+TGG + chr5_2:73651646-73651665 None:intergenic 40.0%
TACCCTTTCCCATAACTTCA+TGG - chr5_2:73651742-73651761 Msa0787690:CDS 40.0%
CAAGATTGCGCGAATTATAG+GGG + chr5_2:73651788-73651807 None:intergenic 40.0%
TCCCCCTTGTTCTTATAGAT+TGG - chr5_2:73651812-73651831 Msa0787690:intron 40.0%
TATGAGGACGAAGAAAATGC+CGG + chr5_2:73651864-73651883 None:intergenic 40.0%
ATCGAAGTGTGGAAAAGTCT+TGG + chr5_2:73651929-73651948 None:intergenic 40.0%
! AGACTTTTCCACACTTCGAT+AGG - chr5_2:73651929-73651948 Msa0787690:intron 40.0%
ACAACATACCTATCGAAGTG+TGG + chr5_2:73651940-73651959 None:intergenic 40.0%
ACTTCGATAGGTATGTTGTC+CGG - chr5_2:73651941-73651960 Msa0787690:intron 40.0%
GAAAAGGATGAGTAATGGCA+AGG + chr5_2:73651975-73651994 None:intergenic 40.0%
GCGTTGAAAAGGATGAGTAA+TGG + chr5_2:73651980-73651999 None:intergenic 40.0%
!! AGGTGAAAGAAGCGTTGAAA+AGG + chr5_2:73651991-73652010 None:intergenic 40.0%
TAACAGGTTAGACATCAGAG+AGG + chr5_2:73652056-73652075 None:intergenic 40.0%
ATGTCTAACCTGTTAGAGTC+TGG - chr5_2:73652061-73652080 Msa0787690:intron 40.0%
AGATCTTACCAGACTCTAAC+AGG + chr5_2:73652072-73652091 None:intergenic 40.0%
GGTGCAAGAGAGAGATATTA+AGG + chr5_2:73652140-73652159 None:intergenic 40.0%
!! CGATGAAGAGGGTATAGTTT+TGG + chr5_2:73652161-73652180 None:intergenic 40.0%
CAGCTTGAATACGATGAAGA+GGG + chr5_2:73652172-73652191 None:intergenic 40.0%
CTCTTCATCGTATTCAAGCT+GGG - chr5_2:73652171-73652190 Msa0787690:intron 40.0%
GTGGTAAGACTAGACATGAT+AGG - chr5_2:73652378-73652397 Msa0787690:intron 40.0%
TGACATCATTAGAGAGAGAG+TGG - chr5_2:73652409-73652428 Msa0787690:intron 40.0%
GACATCATTAGAGAGAGAGT+GGG - chr5_2:73652410-73652429 Msa0787690:intron 40.0%
ACATCATTAGAGAGAGAGTG+GGG - chr5_2:73652411-73652430 Msa0787690:intron 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG - chr5_2:73652542-73652561 Msa0787690:intron 40.0%
TCTTTCCACGTGTTTCCTAA+CGG + chr5_2:73653113-73653132 None:intergenic 40.0%
!! TATTAGTCTTGACCTTGGGA+TGG - chr5_2:73653279-73653298 Msa0787690:intron 40.0%
!! ATTAGTCTTGACCTTGGGAT+GGG - chr5_2:73653280-73653299 Msa0787690:intron 40.0%
GAAATAGATCGAATGGGCAA+GGG - chr5_2:73653320-73653339 Msa0787690:intron 40.0%
TCATAATACTACCTCAGCTC+CGG - chr5_2:73653411-73653430 Msa0787690:intron 40.0%
TATCCTTGCTCACAAACCAT+GGG - chr5_2:73653520-73653539 Msa0787690:CDS 40.0%
CCATGGGAAGAATACTAATG+GGG - chr5_2:73653536-73653555 Msa0787690:CDS 40.0%
!!! GCATTGTGTTGTTTTTTGGC+GGG - chr5_2:73653608-73653627 Msa0787690:CDS 40.0%
!! CCAGTTCGATTCGGATCAAT+GGG + chr5_2:73648622-73648641 None:intergenic 45.0%
CCATTGATCCGAATCGAACT+GGG - chr5_2:73648620-73648639 Msa0787690:intron 45.0%
TGGGTCGGGTCAAAATTCAA+TGG - chr5_2:73648639-73648658 Msa0787690:intron 45.0%
AAGATACAAGCTGATGTCGC+CGG - chr5_2:73648663-73648682 Msa0787690:CDS 45.0%
GTATAGTCCGACGTCATTGT+TGG - chr5_2:73648732-73648751 Msa0787690:CDS 45.0%
CTTACAATATGGGTGGTGAG+TGG - chr5_2:73649008-73649027 Msa0787690:CDS 45.0%
TATATATGGGGTGGTGTGAG+TGG - chr5_2:73649363-73649382 Msa0787690:intron 45.0%
! TGCTGTTTGTTTGGGGGTTT+AGG - chr5_2:73650272-73650291 Msa0787690:intron 45.0%
GCTGTTTGTTTGGGGGTTTA+GGG - chr5_2:73650273-73650292 Msa0787690:intron 45.0%
AACTGTTCTATGGCTTCTGC+TGG - chr5_2:73650436-73650455 Msa0787690:intron 45.0%
ACATGGTTGTTGAAGTCTGC+AGG + chr5_2:73650682-73650701 None:intergenic 45.0%
TCTACTCAAGTGGAAGGTTC+AGG - chr5_2:73650712-73650731 Msa0787690:intron 45.0%
CAAGTGGAAGGTTCAGGAAA+CGG - chr5_2:73650718-73650737 Msa0787690:intron 45.0%
TCATCCGAATTGACATCGAC+GGG + chr5_2:73650853-73650872 None:intergenic 45.0%
TCGGATGAACCTAACCACAA+AGG - chr5_2:73650865-73650884 Msa0787690:CDS 45.0%
CATTAGCAGTGTTGCCTTTG+TGG + chr5_2:73650882-73650901 None:intergenic 45.0%
CACAAAGGCAACACTGCTAA+TGG - chr5_2:73650880-73650899 Msa0787690:CDS 45.0%
GGGCCTCAATCATCAAATGA+TGG - chr5_2:73650901-73650920 Msa0787690:CDS 45.0%
AAGGAGAGAGATCCGATAAC+AGG - chr5_2:73651136-73651155 Msa0787690:CDS 45.0%
AGGAGAGAGATCCGATAACA+GGG - chr5_2:73651137-73651156 Msa0787690:CDS 45.0%
! CGATAACAGGGCATCTTCTT+TGG - chr5_2:73651149-73651168 Msa0787690:CDS 45.0%
TCTAGCCGGTATTACCATCT+CGG + chr5_2:73651179-73651198 None:intergenic 45.0%
TGCAACGAGAAACATCTAGC+CGG + chr5_2:73651193-73651212 None:intergenic 45.0%
TAGTCCAGAGCAATCAGTTG+TGG - chr5_2:73651296-73651315 Msa0787690:CDS 45.0%
AATGATCTTAGTCCAGAGGG+TGG - chr5_2:73651324-73651343 Msa0787690:CDS 45.0%
GTCTGCTTGCTTTCTGACAA+CGG - chr5_2:73651451-73651470 Msa0787690:CDS 45.0%
TCTCGGATAGGCTTAACTAC+AGG + chr5_2:73651523-73651542 None:intergenic 45.0%
!! TATTGGATGATGGATACCGC+TGG - chr5_2:73651581-73651600 Msa0787690:intron 45.0%
GATACCGCTGGCGTAAATAT+GGG - chr5_2:73651593-73651612 Msa0787690:intron 45.0%
AATATGGGCAGAAGGTTGTG+AGG - chr5_2:73651608-73651627 Msa0787690:intron 45.0%
ATATGGGCAGAAGGTTGTGA+GGG - chr5_2:73651609-73651628 Msa0787690:intron 45.0%
GTCTTGGCGATAGAGGAATT+GGG + chr5_2:73651913-73651932 None:intergenic 45.0%
AGTCTTGGCGATAGAGGAAT+TGG + chr5_2:73651914-73651933 None:intergenic 45.0%
TGGAAAAGTCTTGGCGATAG+AGG + chr5_2:73651920-73651939 None:intergenic 45.0%
TGAGTAATGGCAAGGCAGTT+GGG + chr5_2:73651967-73651986 None:intergenic 45.0%
ATGAGTAATGGCAAGGCAGT+TGG + chr5_2:73651968-73651987 None:intergenic 45.0%
CCAGCTTGAATACGATGAAG+AGG + chr5_2:73652173-73652192 None:intergenic 45.0%
CCTCTTCATCGTATTCAAGC+TGG - chr5_2:73652170-73652189 Msa0787690:intron 45.0%
TTCATCGTATTCAAGCTGGG+TGG - chr5_2:73652174-73652193 Msa0787690:intron 45.0%
TTCAAGCTGGGTGGTTGAAA+TGG - chr5_2:73652183-73652202 Msa0787690:intron 45.0%
TTGAAATGGAGAAGAGCCTC+AGG - chr5_2:73652197-73652216 Msa0787690:intron 45.0%
CTTATCGCACAAAACACCTG+AGG + chr5_2:73652216-73652235 None:intergenic 45.0%
ACCGGCAATGTTGTATGGTA+CGG - chr5_2:73652283-73652302 Msa0787690:intron 45.0%
TCCGTACCATACAACATTGC+CGG + chr5_2:73652287-73652306 None:intergenic 45.0%
TGTTGTATGGTACGGAGTGT+TGG - chr5_2:73652291-73652310 Msa0787690:intron 45.0%
! GTTGTATGGTACGGAGTGTT+GGG - chr5_2:73652292-73652311 Msa0787690:intron 45.0%
CGCTTACTTTACTCTCGTGT+TGG + chr5_2:73652328-73652347 None:intergenic 45.0%
CGAGAGTAAAGTAAGCGTAG+CGG - chr5_2:73652331-73652350 Msa0787690:intron 45.0%
CATCATTAGAGAGAGAGTGG+GGG - chr5_2:73652412-73652431 Msa0787690:intron 45.0%
AGATCAAATGGAGGAGAGTC+AGG - chr5_2:73652526-73652545 Msa0787690:intron 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG - chr5_2:73652536-73652555 Msa0787690:intron 45.0%
AACGCCTTATCCCACTAAGT+GGG + chr5_2:73652683-73652702 None:intergenic 45.0%
TGGGTTTGACGAAATTACGG+TGG + chr5_2:73652970-73652989 None:intergenic 45.0%
TTTCCACGTGTTTCCTAACG+GGG + chr5_2:73653111-73653130 None:intergenic 45.0%
CTTTCCACGTGTTTCCTAAC+GGG + chr5_2:73653112-73653131 None:intergenic 45.0%
AAGGAGTAGTAGCCATGACA+TGG - chr5_2:73653201-73653220 Msa0787690:intron 45.0%
ATTCGATCTATTTCCAGCCG+TGG + chr5_2:73653314-73653333 None:intergenic 45.0%
ACGGCTGGAAATAGATCGAA+TGG - chr5_2:73653313-73653332 Msa0787690:intron 45.0%
CGGCTGGAAATAGATCGAAT+GGG - chr5_2:73653314-73653333 Msa0787690:intron 45.0%
GGAAATAGATCGAATGGGCA+AGG - chr5_2:73653319-73653338 Msa0787690:intron 45.0%
GTATCCTTGCTCACAAACCA+TGG - chr5_2:73653519-73653538 Msa0787690:CDS 45.0%
CCCCATTAGTATTCTTCCCA+TGG + chr5_2:73653539-73653558 None:intergenic 45.0%
! TGGCGGGTATATAGCTTCAA+AGG - chr5_2:73653624-73653643 Msa0787690:exon 45.0%
!! GTAGTATTGATAGTGGCTCC+AGG - chr5_2:73653733-73653752 Msa0787690:five_prime_UTR 45.0%
TGTCAGAGATGGTGAGAGAG+TGG + chr5_2:73648494-73648513 None:intergenic 50.0%
CGATAACATCGCCGTCACAA+TGG - chr5_2:73648564-73648583 Msa0787690:three_prime_UTR 50.0%
GGTGGTTGCTTCCATTGTGA+CGG + chr5_2:73648578-73648597 None:intergenic 50.0%
CCCATTGATCCGAATCGAAC+TGG - chr5_2:73648619-73648638 Msa0787690:intron 50.0%
!! CCCAGTTCGATTCGGATCAA+TGG + chr5_2:73648623-73648642 None:intergenic 50.0%
TGATCCGAATCGAACTGGGT+CGG - chr5_2:73648624-73648643 Msa0787690:intron 50.0%
CAATGACGTCGGACTATACC+CGG + chr5_2:73648731-73648750 None:intergenic 50.0%
GGAGACTCCAACAATGACGT+CGG + chr5_2:73648742-73648761 None:intergenic 50.0%
GACGTCATTGTTGGAGTCTC+CGG - chr5_2:73648741-73648760 Msa0787690:CDS 50.0%
TTATCAGCAAGCGATGCGAG+CGG + chr5_2:73650166-73650185 None:intergenic 50.0%
! TTGAGCCTTCACCGACTACA+GGG - chr5_2:73650395-73650414 Msa0787690:intron 50.0%
TGAAGAAGGGACCCTGTAGT+CGG + chr5_2:73650409-73650428 None:intergenic 50.0%
GCAGTGTTGCCTTTGTGGTT+AGG + chr5_2:73650877-73650896 None:intergenic 50.0%
CGGTTGCTTGGTTGAGGTTT+AGG + chr5_2:73651087-73651106 None:intergenic 50.0%
!! GAGTATCGGTTGCTTGGTTG+AGG + chr5_2:73651093-73651112 None:intergenic 50.0%
! AACAGGGCATCTTCTTTGGC+TGG - chr5_2:73651153-73651172 Msa0787690:CDS 50.0%
GTTGCCACAACTGATTGCTC+TGG + chr5_2:73651303-73651322 None:intergenic 50.0%
TGTCGACCAGGACAAACGAT+GGG - chr5_2:73651355-73651374 Msa0787690:CDS 50.0%
ATCAACCCCATCGTTTGTCC+TGG + chr5_2:73651364-73651383 None:intergenic 50.0%
TTAAGCCTATCCGAGAGCCA+CGG - chr5_2:73651527-73651546 Msa0787690:intron 50.0%
ATAGTCTGTACCACAACCCG+TGG + chr5_2:73651547-73651566 None:intergenic 50.0%
GGATACCGCTGGCGTAAATA+TGG - chr5_2:73651592-73651611 Msa0787690:intron 50.0%
TCTGCCCATATTTACGCCAG+CGG + chr5_2:73651600-73651619 None:intergenic 50.0%
CTGGCGTAAATATGGGCAGA+AGG - chr5_2:73651600-73651619 Msa0787690:intron 50.0%
TATGGGCAGAAGGTTGTGAG+GGG - chr5_2:73651610-73651629 Msa0787690:intron 50.0%
TGAGGGGAAATCCTAACCCA+AGG - chr5_2:73651626-73651645 Msa0787690:intron 50.0%
GCGAGGATATACCTTGGGTT+AGG + chr5_2:73651640-73651659 None:intergenic 50.0%
TTGGCGATAGAGGAATTGGG+TGG + chr5_2:73651910-73651929 None:intergenic 50.0%
CAGGTTAGACATCAGAGAGG+AGG + chr5_2:73652053-73652072 None:intergenic 50.0%
GTCAGACCGGCAATGTTGTA+TGG - chr5_2:73652278-73652297 Msa0787690:intron 50.0%
! AAGTAAGCGTAGCGGAGATG+AGG - chr5_2:73652339-73652358 Msa0787690:intron 50.0%
AGGATGTTGCGTTGGATGAG+TGG - chr5_2:73652359-73652378 Msa0787690:intron 50.0%
ACTTCTTACCACGGCGTCTA+CGG + chr5_2:73652504-73652523 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr5_2:73652678-73652697 None:intergenic 50.0%
ACGCCTTATCCCACTAAGTG+GGG + chr5_2:73652682-73652701 None:intergenic 50.0%
CAACGCCTTATCCCACTAAG+TGG + chr5_2:73652684-73652703 None:intergenic 50.0%
ACATGCACTTAGTCAGCAGC+AGG + chr5_2:73652922-73652941 None:intergenic 50.0%
ATCATGATGTACCTGCCGCA+AGG - chr5_2:73653182-73653201 Msa0787690:intron 50.0%
GTCATGGCTACTACTCCTTG+CGG + chr5_2:73653200-73653219 None:intergenic 50.0%
AGTAGTAGCCATGACATGGC+AGG - chr5_2:73653205-73653224 Msa0787690:intron 50.0%
TTGCATGTCCTGCCATGTCA+TGG + chr5_2:73653216-73653235 None:intergenic 50.0%
ACCTCAGCTCCGGTATACTA+CGG - chr5_2:73653421-73653440 Msa0787690:intron 50.0%
GGTTTGTGAGCAAGGATACG+CGG + chr5_2:73653518-73653537 None:intergenic 50.0%
! CTTCCCATGGTTTGTGAGCA+AGG + chr5_2:73653526-73653545 None:intergenic 50.0%
GAAGCAACCACCACCAACTC+CGG - chr5_2:73648586-73648605 Msa0787690:three_prime_UTR 55.0%
ATCAATGGGTGTCCCTTCGC+CGG + chr5_2:73648608-73648627 None:intergenic 55.0%
GATCCGAATCGAACTGGGTC+GGG - chr5_2:73648625-73648644 Msa0787690:intron 55.0%
TGACCCGACCCAGTTCGATT+CGG + chr5_2:73648631-73648650 None:intergenic 55.0%
! GTTGAGCCTTCACCGACTAC+AGG - chr5_2:73650394-73650413 Msa0787690:intron 55.0%
CGCTCCCGTCGATGTCAATT+CGG - chr5_2:73650846-73650865 Msa0787690:CDS 55.0%
!! CCAGCAGAGTATCGGTTGCT+TGG + chr5_2:73651099-73651118 None:intergenic 55.0%
CCAAGCAACCGATACTCTGC+TGG - chr5_2:73651096-73651115 Msa0787690:CDS 55.0%
! TCTTCTTTGGCTGGCCGAGA+TGG - chr5_2:73651162-73651181 Msa0787690:CDS 55.0%
GCTGGCCGAGATGGTAATAC+CGG - chr5_2:73651171-73651190 Msa0787690:CDS 55.0%
GATCTTAGTCCAGAGGGTGG+TGG - chr5_2:73651327-73651346 Msa0787690:CDS 55.0%
GACACAAATCCACCACCCTC+TGG + chr5_2:73651339-73651358 None:intergenic 55.0%
!! GTGGTGGATTTGTGTCGACC+AGG - chr5_2:73651343-73651362 Msa0787690:CDS 55.0%
! GTGTCGACCAGGACAAACGA+TGG - chr5_2:73651354-73651373 Msa0787690:CDS 55.0%
GTCGACCAGGACAAACGATG+GGG - chr5_2:73651356-73651375 Msa0787690:CDS 55.0%
TAAGCCTATCCGAGAGCCAC+GGG - chr5_2:73651528-73651547 Msa0787690:intron 55.0%
GTGCTTCTTCTCCACTCGTC+CGG - chr5_2:73651842-73651861 Msa0787690:intron 55.0%
CGAAGAAAATGCCGGACGAG+TGG + chr5_2:73651856-73651875 None:intergenic 55.0%
TAATGGCAAGGCAGTTGGGC+CGG + chr5_2:73651963-73651982 None:intergenic 55.0%
CTATCGGACAGCAGTCAGAC+CGG - chr5_2:73652265-73652284 Msa0787690:intron 55.0%
!! GTATGGTACGGAGTGTTGGG+CGG - chr5_2:73652295-73652314 Msa0787690:intron 55.0%
CGGAGATGAGGATGTTGCGT+TGG - chr5_2:73652351-73652370 Msa0787690:intron 55.0%
CTTCTTACCACGGCGTCTAC+GGG + chr5_2:73652503-73652522 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr5_2:73652670-73652689 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr5_2:73652669-73652688 Msa0787690:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr5_2:73652670-73652689 Msa0787690:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr5_2:73652676-73652695 Msa0787690:intron 55.0%
GTGTTTCCTAACGGGGCAAC+CGG + chr5_2:73653104-73653123 None:intergenic 55.0%
TTGCCCCGTTAGGAAACACG+TGG - chr5_2:73653105-73653124 Msa0787690:intron 55.0%
! TGGAGCTGATTCCCATCCCA+AGG + chr5_2:73653294-73653313 None:intergenic 55.0%
TGGGATGGGAATCAGCTCCA+CGG - chr5_2:73653294-73653313 Msa0787690:intron 55.0%
ACCGTAGTATACCGGAGCTG+AGG + chr5_2:73653425-73653444 None:intergenic 55.0%
GTGAGCAAGGATACGCGGAA+TGG + chr5_2:73653513-73653532 None:intergenic 55.0%
CTCGAGATCGGAAGCTTCGC+CGG + chr5_2:73648685-73648704 None:intergenic 60.0%
ATGCACGGCGACCTCGAGAT+CGG + chr5_2:73648697-73648716 None:intergenic 60.0%
! CCGGCGGGTATTGTGATGCA+CGG + chr5_2:73648712-73648731 None:intergenic 60.0%
CCGTGCATCACAATACCCGC+CGG - chr5_2:73648709-73648728 Msa0787690:CDS 60.0%
CGTGCATCACAATACCCGCC+GGG - chr5_2:73648710-73648729 Msa0787690:CDS 60.0%
TGACGTCGGACTATACCCGG+CGG + chr5_2:73648728-73648747 None:intergenic 60.0%
AGGGACCCTGTAGTCGGTGA+AGG + chr5_2:73650403-73650422 None:intergenic 60.0%
ACAACCCGTGGCTCTCGGAT+AGG + chr5_2:73651535-73651554 None:intergenic 60.0%
! TATCCGAGAGCCACGGGTTG+TGG - chr5_2:73651534-73651553 Msa0787690:intron 60.0%
GTACCACAACCCGTGGCTCT+CGG + chr5_2:73651540-73651559 None:intergenic 60.0%
! TCGTCGGATTCAGGAGCACG+AGG + chr5_2:73652011-73652030 None:intergenic 60.0%
! CAAATGCCGGTTGCCCCGTT+AGG - chr5_2:73653095-73653114 Msa0787690:intron 60.0%
TGGCTACTACTCCTTGCGGC+AGG + chr5_2:73653196-73653215 None:intergenic 60.0%
ATGGGAATCAGCTCCACGGC+TGG - chr5_2:73653298-73653317 Msa0787690:intron 60.0%
ACCACCACCAACTCCGGCGA+AGG - chr5_2:73648592-73648611 Msa0787690:three_prime_UTR 65.0%
CCACCACCAACTCCGGCGAA+GGG - chr5_2:73648593-73648612 Msa0787690:three_prime_UTR 65.0%
TGTCCCTTCGCCGGAGTTGG+TGG + chr5_2:73648599-73648618 None:intergenic 65.0%
CGGCGAAGCTTCCGATCTCG+AGG - chr5_2:73648683-73648702 Msa0787690:CDS 65.0%
GACGTCGGACTATACCCGGC+GGG + chr5_2:73648727-73648746 None:intergenic 65.0%
!! ATCGACGGGAGCGCTAGTGC+TGG + chr5_2:73650839-73650858 None:intergenic 65.0%
GAGAAGACCCGTAGACGCCG+TGG - chr5_2:73652493-73652512 Msa0787690:intron 65.0%
!! CCCTTCGCCGGAGTTGGTGG+TGG + chr5_2:73648596-73648615 None:intergenic 70.0%
GGGTGTCCCTTCGCCGGAGT+TGG + chr5_2:73648602-73648621 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 73648395 73653824 73648395 ID=Msa0787690;Name=Msa0787690
chr5_2 mRNA 73648395 73653824 73648395 ID=Msa0787690-mRNA-1;Parent=Msa0787690;Name=Msa0787690-mRNA-1;_AED=0.17;_eAED=0.17;_QI=188|0.8|1|1|0.6|0.66|6|238|495
chr5_2 exon 73648395 73648626 73648395 ID=Msa0787690-mRNA-1:exon:22455;Parent=Msa0787690-mRNA-1
chr5_2 exon 73648649 73649141 73648649 ID=Msa0787690-mRNA-1:exon:22454;Parent=Msa0787690-mRNA-1
chr5_2 exon 73650810 73650936 73650810 ID=Msa0787690-mRNA-1:exon:22453;Parent=Msa0787690-mRNA-1
chr5_2 exon 73651036 73651543 73651036 ID=Msa0787690-mRNA-1:exon:22452;Parent=Msa0787690-mRNA-1
chr5_2 exon 73651661 73651825 73651661 ID=Msa0787690-mRNA-1:exon:22451;Parent=Msa0787690-mRNA-1
chr5_2 exon 73653436 73653824 73653436 ID=Msa0787690-mRNA-1:exon:22450;Parent=Msa0787690-mRNA-1
chr5_2 five_prime_UTR 73653637 73653824 73653637 ID=Msa0787690-mRNA-1:five_prime_utr;Parent=Msa0787690-mRNA-1
chr5_2 CDS 73653436 73653636 73653436 ID=Msa0787690-mRNA-1:cds;Parent=Msa0787690-mRNA-1
chr5_2 CDS 73651661 73651825 73651661 ID=Msa0787690-mRNA-1:cds;Parent=Msa0787690-mRNA-1
chr5_2 CDS 73651036 73651543 73651036 ID=Msa0787690-mRNA-1:cds;Parent=Msa0787690-mRNA-1
chr5_2 CDS 73650810 73650936 73650810 ID=Msa0787690-mRNA-1:cds;Parent=Msa0787690-mRNA-1
chr5_2 CDS 73648655 73649141 73648655 ID=Msa0787690-mRNA-1:cds;Parent=Msa0787690-mRNA-1
chr5_2 three_prime_UTR 73648649 73648654 73648649 ID=Msa0787690-mRNA-1:three_prime_utr;Parent=Msa0787690-mRNA-1
chr5_2 three_prime_UTR 73648395 73648626 73648395 ID=Msa0787690-mRNA-1:three_prime_utr;Parent=Msa0787690-mRNA-1
Gene Sequence

>Msa0787690

ATGGAAGCAACCACCACCAACTCCGGCGAAGGGACACCCATTGATCCGAATCGAACTGGGTCGGGTCAAAATTCAATGGCAAGATACAAGCTGATGTCGCCGGCGAAGCTTCCGATCTCGAGGTCGCCGTGCATCACAATACCCGCCGGGTATAGTCCGACGTCATTGTTGGAGTCTCCGGTTCTTCTTTCAAACATGAAGGTTGAGCCTTCACCGACTACAGGGTCCCTTCTTCAAGCTTTAAACTGTTCTATGGCTTCTGCTGGTTCTGCTACATTTCCTGTAACTTCTGCATGCTTCAATACCAGCACTGTTAATGGCAGAAAATCAAGTTTCTTTGAGTTTAAACCACAAGATAGAAATATGGTTCCTGCAGACTTCAACAACCATGTAAGCGAAAAATCTACTCAAGTGGAAGGTTCAGGAAACGGTCCATCATTTCGATCTTCTCCATTAAATGAAAAGGAGATAGCAGATCAATCTAATGAATTAAGCCTATCATCATCACCTGTTCAAATGGTTAGTTCCAGCACTAGCGCTCCCGTCGATGTCAATTCGGATGAACCTAACCACAAAGGCAACACTGCTAATGGGCCTCAATCATCAAATGATGGATACAATTGGCGAAAGTATGGGCAAAAACATGTTAAAGGGAGTGAGTTTCCGCGCAGCTATTACAAATGTACGCATCCTAACTGTGAAGTGAAAAAACTTTTTGAACGCTCTCATGATGGTCAAATCACTGAGATAATATATAAGGGAACACATGATCATCCTAAACCTCAACCAAGCAACCGATACTCTGCTGGTTCTGTTATGTCTACACAAGGAGAGAGATCCGATAACAGGGCATCTTCTTTGGCTGGCCGAGATGACAAAGCATCCAATAGTCCAGAGCAATCAGTTGTGGCAACAAATGATCTTAGTCCAGAGGGTGGTGGATTTGTGTCGACCAGGACAAACGATGGGGTTGATGAAGATGATCCCTTCTCAAAGCAAAGGAGTTATTACAAATGTACAAATGCCGGTTGCCCCGTTAGGAAACACGTGGAAAGAGCATCACATGATCCGAAAGCTGTAATTACAACATATGAAGGCAAACACAATCATGATGTACCTGCCGCAAGGAGTAGTAGCCATGACATGGCAGGACATGCAACTTCATTTCGACAGACAAGAATAAAATTGGAAGAAAATGATACTATTAGTCTTGACCTTGGGATGGGAATCAGCTCCACGGCTGGAAATAGATCGAATGGGCAAGGGAAAATGCTGCTATCCGAATTTAGGAATAGCAATCAAACTCACACAAGCAATTCCAGTTTCAAGTTTGTTCATAATACTACCTCAGCTCCGGTATACTACGGTGTTCTAAATAACGGTTCAAATCCGTTTGGTTCTAGAGAAAATAGAAATGATGGTTCGTCTTTAAACCATTCCGCGTATCCTTGCTCACAAACCATGGGAAGAATACTAATGGGGCCATGA
Protein sequence

>Msa0787690

MEATTTNSGEGTPIDPNRTGSGQNSMARYKLMSPAKLPISRSPCITIPAGYSPTSLLESPVLLSNMKVEPSPTTGSLLQALNCSMASAGSATFPVTSACFNTSTVNGRKSSFFEFKPQDRNMVPADFNNHVSEKSTQVEGSGNGPSFRSSPLNEKEIADQSNELSLSSSPVQMVSSSTSAPVDVNSDEPNHKGNTANGPQSSNDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPSNRYSAGSVMSTQGERSDNRASSLAGRDDKASNSPEQSVVATNDLSPEGGGFVSTRTNDGVDEDDPFSKQRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPAARSSSHDMAGHATSFRQTRIKLEENDTISLDLGMGISSTAGNRSNGQGKMLLSEFRNSNQTHTSNSSFKFVHNTTSAPVYYGVLNNGSNPFGSRENRNDGSSLNHSAYPCSQTMGRILMGP*