AlfalfaGEDB | Msa0787820

M. sativa cultivar zhongmu-4 / Msa0787820

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF01388.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0787820	XP_039690127.1	88.235	255	22	2	1	255	1	247	1.60e-160	456

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0787820	G7K4J6	88.235	255	22	2	1	255	1	247	7.65e-161	456

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TFs/TRs:

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Gene ID	Type	Classification
Msa0787820	TR	ARID

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0787820	MtrunA17_Chr5g0445971	88.095	168	17	2	1	168	1	165	4.03e-105	301
Msa0787820	MtrunA17_Chr5g0435401	67.857	224	67	3	34	253	44	266	8.76e-98	291
Msa0787820	MtrunA17_Chr5g0435401	66.250	80	26	1	177	255	264	343	4.72e-24	99.8
Msa0787820	MtrunA17_Chr1g0192841	60.606	99	30	2	166	255	44	142	1.85e-25	100

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0787820	AT1G55650.1	24.481	241	144	7	34	245	38	269	2.15e-11	63.5

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Find 72 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAAAGAAGAAACAGAG+AGG	0.700139	5_2:+73887297	Msa0787820:CDS
AACAAATGGCTATTGATACT+TGG	0.501313	5_2:+73887409	Msa0787820:CDS
AACTACTCTAGTCAAATTAC+AGG	0.369281	5_2:+73886631	Msa0787820:CDS
AAGGTCCAGTTAAAAGGAAG+CGG	0.550807	5_2:+73886539	Msa0787820:intron
AATGTTGAATGTTTATCGTA+CGG	0.547849	5_2:+73887780	Msa0787820:three_prime_UTR
AATTTGACTAGAGTAGTTCT+TGG	0.346592	5_2:-73886626	None:intergenic
ACAAGTTTAGGGATGTTTCT+CGG	0.498193	5_2:-73885722	None:intergenic
ACATAAGAGTGACACGTATT+TGG	0.207652	5_2:+73885181	Msa0787820:five_prime_UTR
ACATTGGTGAGTTGTGTGTT+TGG	0.432104	5_2:-73885324	None:intergenic
ACCAATGTTGTCGTGTCCGG+CGG	0.561143	5_2:+73885339	Msa0787820:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTAAAACAGGTACAAGTTTA+GGG	-	chr5_2:73885736-73885755	None:intergenic	30.0%
AGTAAAACAGGTACAAGTTT+AGG	-	chr5_2:73885737-73885756	None:intergenic	30.0%
ATGTAACCAAACAATATACC+TGG	-	chr5_2:73885788-73885807	None:intergenic	30.0%
ATGTAACCAAACAATATACC+TGG	-	chr5_2:73885788-73885807	None:intergenic	30.0%
TTACAGGCACAACATATTTA+TGG	-	chr5_2:73886126-73886145	None:intergenic	30.0%
TTGTAAATTGAACATCTCTG+AGG	-	chr5_2:73886209-73886228	None:intergenic	30.0%
TTGAGAAATTGTACTTCTAC+AGG	+	chr5_2:73886375-73886394	Msa0787820:CDS	30.0%
ACCTTAAATACTCCTTTCTA+AGG	+	chr5_2:73886520-73886539	Msa0787820:intron	30.0%
AATTTGACTAGAGTAGTTCT+TGG	-	chr5_2:73886629-73886648	None:intergenic	30.0%
AACTACTCTAGTCAAATTAC+AGG	+	chr5_2:73886631-73886650	Msa0787820:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	73885162	73887986	73885162	ID=Msa0787820;Name=Msa0787820
chr5_2	mRNA	73885162	73887986	73885162	ID=Msa0787820-mRNA-1;Parent=Msa0787820;Name=Msa0787820-mRNA-1;_AED=0.03;_eAED=0.03;_QI=129\|0.8\|0.83\|1\|1\|1\|6\|352\|255
chr5_2	exon	73885162	73885439	73885162	ID=Msa0787820-mRNA-1:exon:22484;Parent=Msa0787820-mRNA-1
chr5_2	exon	73885713	73885788	73885713	ID=Msa0787820-mRNA-1:exon:22485;Parent=Msa0787820-mRNA-1
chr5_2	exon	73886263	73886425	73886263	ID=Msa0787820-mRNA-1:exon:22486;Parent=Msa0787820-mRNA-1
chr5_2	exon	73886542	73886652	73886542	ID=Msa0787820-mRNA-1:exon:22487;Parent=Msa0787820-mRNA-1
chr5_2	exon	73887247	73887458	73887247	ID=Msa0787820-mRNA-1:exon:22488;Parent=Msa0787820-mRNA-1
chr5_2	exon	73887578	73887986	73887578	ID=Msa0787820-mRNA-1:exon:22489;Parent=Msa0787820-mRNA-1
chr5_2	five_prime_UTR	73885162	73885290	73885162	ID=Msa0787820-mRNA-1:five_prime_utr;Parent=Msa0787820-mRNA-1
chr5_2	CDS	73885291	73885439	73885291	ID=Msa0787820-mRNA-1:cds;Parent=Msa0787820-mRNA-1
chr5_2	CDS	73885713	73885788	73885713	ID=Msa0787820-mRNA-1:cds;Parent=Msa0787820-mRNA-1
chr5_2	CDS	73886263	73886425	73886263	ID=Msa0787820-mRNA-1:cds;Parent=Msa0787820-mRNA-1
chr5_2	CDS	73886542	73886652	73886542	ID=Msa0787820-mRNA-1:cds;Parent=Msa0787820-mRNA-1
chr5_2	CDS	73887247	73887458	73887247	ID=Msa0787820-mRNA-1:cds;Parent=Msa0787820-mRNA-1
chr5_2	CDS	73887578	73887634	73887578	ID=Msa0787820-mRNA-1:cds;Parent=Msa0787820-mRNA-1
chr5_2	three_prime_UTR	73887635	73887986	73887635	ID=Msa0787820-mRNA-1:three_prime_utr;Parent=Msa0787820-mRNA-1

Gene Sequence

>Msa0787820

ATGGAAGACAAGGAAACGGTGAAGACGACGGTTCCAAACACACAACTCACCAATGTTGTCGTGTCCGGCGGGAAACAGTATTCTTCTCCTAATGACTTGGAGACCTTCTATATCAAACTCACTCGACTTTTAGACTTCGCTGGAAAACGTTTCAATGTCCGAGAAACATCCCTAAACTTGTACCTGTTTTACTTGGAGGTCACAAGAAGAGGAGGTTTTCACCAGGTTGGCCATGAAAAGAAATGGGGTGAAGTTGTTTCTGCTCTAAAACTGGAAGGAAACAATGCAACCTTATGTGCTCAAGTTGAAAAACTCTATGGTCATCTTCTTTACGAATTTGAGAAATTGTACTTCTACAGGTCTCCTCCTGCAACCGCCAATGCAAAAGGTCCAGTTAAAAGGAAGCGGGACTCATGCCCTAGTTTATCTCAATCGACGGACGATGAAGATTATCCGATGGCGGCAAAGATATCCAAGAACTACTCTAGTCAAATTACAGGAGATGGATATCATGAATCTCAAGTGTTTCAACAAGCACCCTCAAGTAACAAAGAAAAGAAGAAACAGAGAGGTGCTCCAAGGAACCAAAGTGGTTACCAAATATTCCTCAAGAAGGAATGTGCTCGACTGAAAGCTGATCATCAGGACATACGCGTCCGAAAACAAATGGCTATTGATACTTGGAAGAAGATGTCGGACATTGATAAAAAGCCATATGTAGAGGAAAGCAAGAAAATAAAGGAAAAAAACAAAGAAGCAATGATATAG

Protein sequence

>Msa0787820

MEDKETVKTTVPNTQLTNVVVSGGKQYSSPNDLETFYIKLTRLLDFAGKRFNVRETSLNLYLFYLEVTRRGGFHQVGHEKKWGEVVSALKLEGNNATLCAQVEKLYGHLLYEFEKLYFYRSPPATANAKGPVKRKRDSCPSLSQSTDDEDYPMAAKISKNYSSQITGDGYHESQVFQQAPSSNKEKKKQRGAPRNQSGYQIFLKKECARLKADHQDIRVRKQMAIDTWKKMSDIDKKPYVEESKKIKEKNKEAMI*