AlfalfaGEDB | Msa0788170

M. sativa cultivar zhongmu-4 / Msa0788170

KEGG: -
GO: -
PFAM: PF00249.34

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0788170	AET00849.1	40.650	123	58	5	1	109	1	122	4.98e-15	75.9

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0788170	G7K4S9	40.650	123	58	5	1	109	1	122	2.38e-15	75.9

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0788170	TF	MYB-related

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0788170	MtrunA17_Chr5g0447061	40.650	123	58	5	1	109	1	122	4.58e-19	75.9

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 21 sgRNAs with CRISPR-Local

Find 34 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATCACCAGGGAGCTCTTCA+AGG	0.457956	5_2:-74527733	None:intergenic
ACAAATTGCTCGAAATCACC+AGG	0.563161	5_2:-74527746	None:intergenic
ACCGCACCAACGGATATGCT+TGG	0.552860	5_2:+74528166	Msa0788170:CDS
ATCAAGGAGGAGTTGGAAAT+TGG	0.290061	5_2:+74527625	Msa0788170:CDS
ATGGCAAATCAAGGAGGAGT+TGG	0.501152	5_2:+74527618	Msa0788170:CDS
CAAATTGCTCGAAATCACCA+GGG	0.727892	5_2:-74527745	None:intergenic
CACCACAAAATTATGGAGCT+TGG	0.430852	5_2:+74527771	Msa0788170:CDS
CATATCCGTTGGTGCGGTAA+CGG	0.463180	5_2:-74528161	None:intergenic
CGAGACCGTTACCGCACCAA+CGG	0.627996	5_2:+74528156	Msa0788170:CDS
CGTTGGTGCGGTAACGGTCT+CGG	0.443472	5_2:-74528155	None:intergenic

Showing 1 to 10 of 21 entries

Previous1 2 3Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TTTGTTCCACCACAAAATTA+TGG	+	chr5_2:74527764-74527783	Msa0788170:CDS	30.0%
TTTCTTTAGGCTATTACTCA+TGG	+	chr5_2:74528059-74528078	Msa0788170:intron	30.0%
TTCTTTAGGCTATTACTCAT+GGG	+	chr5_2:74528060-74528079	Msa0788170:intron	30.0%
ATCAAGGAGGAGTTGGAAAT+TGG	+	chr5_2:74527625-74527644	Msa0788170:CDS	40.0%
CAAATTGCTCGAAATCACCA+GGG	-	chr5_2:74527748-74527767	None:intergenic	40.0%
ACAAATTGCTCGAAATCACC+AGG	-	chr5_2:74527749-74527768	None:intergenic	40.0%
CACCACAAAATTATGGAGCT+TGG	+	chr5_2:74527771-74527790	Msa0788170:CDS	40.0%
ATGGCAAATCAAGGAGGAGT+TGG	+	chr5_2:74527618-74527637	Msa0788170:CDS	45.0%
GTAGTACTCCTTCTTGCTTC+TGG	-	chr5_2:74527714-74527733	None:intergenic	45.0%
TGGAGCTTGGAGTAATGATG+AGG	+	chr5_2:74527784-74527803	Msa0788170:CDS	45.0%

Showing 1 to 10 of 34 entries

Previous1 2 3 4Next

Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	74527618	74528200	74527618	ID=Msa0788170;Name=Msa0788170
chr5_2	mRNA	74527618	74528200	74527618	ID=Msa0788170-mRNA-1;Parent=Msa0788170;Name=Msa0788170-mRNA-1;_AED=0.02;_eAED=0.29;_QI=0\|0\|0\|1\|1\|1\|2\|0\|109
chr5_2	exon	74527618	74527814	74527618	ID=Msa0788170-mRNA-1:exon:22754;Parent=Msa0788170-mRNA-1
chr5_2	exon	74528068	74528200	74528068	ID=Msa0788170-mRNA-1:exon:22755;Parent=Msa0788170-mRNA-1
chr5_2	CDS	74527618	74527814	74527618	ID=Msa0788170-mRNA-1:cds;Parent=Msa0788170-mRNA-1
chr5_2	CDS	74528068	74528200	74528068	ID=Msa0788170-mRNA-1:cds;Parent=Msa0788170-mRNA-1

Gene Sequence	>Msa0788170 ATGGCAAATCAAGGAGGAGTTGGAAATTGGAACGTAGATGATACATTGATGCTTAGACAAGCAATGATAATCTTGAGAGTTTCAGAAATTTTTCCAGAAGCAAGAAGGAGTACTACCTTGAAGAGCTCCCTGGTGATTTCGAGCAATTTGTTCCACCACAAAATTATGGAGCTTGGAGTAATGATGAGGATCAGTAAGCTATTACTCATGGGATTGAGATTTTACGGCCGAAAATGGACGCGGATTTCTAGAGAGATTGTGTTGACGAGGAACGCATCGCAATGCCGAGACCGTTACCGCACCAACGGATATGCTTGGATGAACTTTTAG
Protein sequence	>Msa0788170 MANQGGVGNWNVDDTLMLRQAMIILRVSEIFPEARRSTTLKSSLVISSNLFHHKIMELGVMMRISKLLLMGLRFYGRKWTRISREIVLTRNASQCRDRYRTNGYAWMNF*