Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0788230 | XP_039690827.1 | 90.402 | 323 | 15 | 1 | 1 | 307 | 4 | 326 | 0.0 | 597 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0788230 | sp|Q680K8|Y1576_ARATH | 42.515 | 334 | 153 | 9 | 1 | 306 | 1 | 323 | 1.43e-74 | 234 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0788230 | G7K4U5 | 90.402 | 323 | 15 | 1 | 1 | 307 | 1 | 323 | 0.0 | 596 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0788230 | TR | TRAF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0788230 | MtrunA17_Chr5g0447191 | 95.699 | 186 | 8 | 0 | 122 | 307 | 3 | 188 | 7.11e-130 | 367 |
| Msa0788230 | MtrunA17_Chr5g0447111 | 42.857 | 329 | 149 | 10 | 6 | 306 | 8 | 325 | 3.62e-79 | 243 |
| Msa0788230 | MtrunA17_Chr3g0103031 | 45.104 | 337 | 141 | 10 | 1 | 306 | 1 | 324 | 1.10e-78 | 242 |
| Msa0788230 | MtrunA17_Chr1g0159831 | 34.731 | 334 | 172 | 10 | 7 | 306 | 5 | 326 | 1.69e-55 | 182 |
| Msa0788230 | MtrunA17_Chr3g0124921 | 36.556 | 331 | 166 | 11 | 7 | 306 | 4 | 321 | 5.52e-55 | 181 |
| Msa0788230 | MtrunA17_Chr4g0029841 | 34.862 | 218 | 126 | 3 | 88 | 305 | 76 | 277 | 1.14e-31 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0788230 | AT1G55760.1 | 42.515 | 334 | 153 | 9 | 1 | 306 | 1 | 323 | 1.45e-75 | 234 |
| Msa0788230 | AT1G21780.2 | 37.690 | 329 | 163 | 9 | 7 | 306 | 5 | 320 | 1.52e-60 | 196 |
| Msa0788230 | AT1G21780.1 | 37.690 | 329 | 163 | 9 | 7 | 306 | 5 | 320 | 1.52e-60 | 196 |
Find 50 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCAATATCTAGTGGAATT+TGG | 0.233852 | 5_2:-74641524 | Msa0788230:CDS |
| TTGGTAAAATACATGAAATC+TGG | 0.300649 | 5_2:-74641505 | Msa0788230:CDS |
| GGTTTGCAGTCTTGAGATCT+AGG | 0.312817 | 5_2:+74642154 | None:intergenic |
| GTGAAACTGATGCATTTAAC+TGG | 0.343547 | 5_2:-74642230 | Msa0788230:CDS |
| TCAAGATATCTAAATGGAAT+TGG | 0.352470 | 5_2:-74643098 | Msa0788230:intron |
| AAGCTTTCAAGATATCTAAA+TGG | 0.359355 | 5_2:-74643104 | Msa0788230:CDS |
| TATGTTTGCACAAGATTCTA+AGG | 0.372257 | 5_2:-74641810 | Msa0788230:CDS |
| CCCACGGATTCCACTTTGAA+TGG | 0.379615 | 5_2:+74643198 | None:intergenic |
| GCATATAATTTGATAGTAAC+CGG | 0.381945 | 5_2:+74642817 | None:intergenic |
| TTTAGATATCTTGAAAGCTT+CGG | 0.402228 | 5_2:+74643107 | None:intergenic |
| ATGAATGCTTGACAAACTTC+AGG | 0.409567 | 5_2:+74641749 | None:intergenic |
| GAATCATAGTTTCGAGCTAT+TGG | 0.410266 | 5_2:-74641687 | Msa0788230:CDS |
| ATCTAGCTGTTCTTGCTGCC+CGG | 0.416939 | 5_2:-74641850 | Msa0788230:CDS |
| CGGAATTTGAAAGATGCAAT+TGG | 0.422404 | 5_2:+74642772 | None:intergenic |
| CCGTGGGTTACGTCGCTCAA+TGG | 0.441645 | 5_2:-74643182 | Msa0788230:CDS |
| GATAGTAACCGGACTGGAAA+GGG | 0.453381 | 5_2:+74642828 | None:intergenic |
| TGCAATTGGTGGATTATTTG+TGG | 0.455591 | 5_2:+74642786 | None:intergenic |
| GAGGGATTCCCTTTCCAGTC+CGG | 0.470003 | 5_2:-74642836 | Msa0788230:CDS |
| TGGTAAAATACATGAAATCT+GGG | 0.484453 | 5_2:-74641504 | Msa0788230:CDS |
| TTGGTTGCTGCTGAGAAATA+CGG | 0.484832 | 5_2:-74641668 | Msa0788230:CDS |
| TACAATCAAGCTCGTATCAT+CGG | 0.487102 | 5_2:-74641891 | Msa0788230:CDS |
| GTTAAATGCATCAGTTTCAC+TGG | 0.496821 | 5_2:+74642233 | None:intergenic |
| AATTTGAAAGATGCAATTGG+TGG | 0.524532 | 5_2:+74642775 | None:intergenic |
| ACACAGGATGTTGTAACATC+AGG | 0.530431 | 5_2:+74642189 | None:intergenic |
| TTAACTAAGGAAGAAATTCA+CGG | 0.535488 | 5_2:+74641426 | None:intergenic |
| TTCTCTTAACATTCGAACAA+GGG | 0.536373 | 5_2:+74641931 | None:intergenic |
| TATATTCAAACATAGGTGAC+CGG | 0.536701 | 5_2:+74641831 | None:intergenic |
| TGATAGTAACCGGACTGGAA+AGG | 0.543693 | 5_2:+74642827 | None:intergenic |
| AGCGCAACTAATCTTCAAGT+AGG | 0.555426 | 5_2:+74641544 | None:intergenic |
| TTTCTCTTAACATTCGAACA+AGG | 0.556453 | 5_2:+74641930 | None:intergenic |
| TCTTGAAAGCTTCGGATGTG+TGG | 0.556978 | 5_2:+74643115 | None:intergenic |
| TCCATTCAAAGTGGAATCCG+TGG | 0.560598 | 5_2:-74643199 | Msa0788230:CDS |
| GCAAACATATATTCAAACAT+AGG | 0.563128 | 5_2:+74641824 | None:intergenic |
| ATGGAGAAACTAACTCAACT+AGG | 0.576117 | 5_2:-74641967 | Msa0788230:CDS |
| TAATTTGATAGTAACCGGAC+TGG | 0.592751 | 5_2:+74642822 | None:intergenic |
| GCGCAACTAATCTTCAAGTA+GGG | 0.602481 | 5_2:+74641545 | None:intergenic |
| TAGGAATTCAACTTCAACAC+AGG | 0.603549 | 5_2:+74642173 | None:intergenic |
| CCATTGAGCGACGTAACCCA+CGG | 0.604930 | 5_2:+74643182 | None:intergenic |
| GGATGTGTGGATAAAACTGT+GGG | 0.608090 | 5_2:+74643128 | None:intergenic |
| TAGTTGCGCTCAATATCTAG+TGG | 0.608180 | 5_2:-74641531 | Msa0788230:CDS |
| CCATTCAAAGTGGAATCCGT+GGG | 0.610952 | 5_2:-74643198 | Msa0788230:CDS |
| ATTGATAGAAATATGCAGCA+TGG | 0.618155 | 5_2:+74641570 | None:intergenic |
| CGGCGTTAGTGACTTGAGAG+AGG | 0.632778 | 5_2:-74641648 | Msa0788230:CDS |
| AAAGGCACATATCATTCTCG+AGG | 0.636899 | 5_2:-74642855 | Msa0788230:intron |
| CGGATGTGTGGATAAAACTG+TGG | 0.637469 | 5_2:+74643127 | None:intergenic |
| TGAAACTGATGCATTTAACT+GGG | 0.643694 | 5_2:-74642229 | Msa0788230:CDS |
| ATATTCAAACATAGGTGACC+GGG | 0.654376 | 5_2:+74641832 | None:intergenic |
| AAGGCACATATCATTCTCGA+GGG | 0.667706 | 5_2:-74642854 | Msa0788230:CDS |
| GCTTGATTGTAGCGTCTGTG+TGG | 0.704769 | 5_2:+74641903 | None:intergenic |
| GATGTGTGGATAAAACTGTG+GGG | 0.837656 | 5_2:+74643129 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTTCAATTATATCATTA+AGG | - | chr5_2:74642003-74642022 | Msa0788230:intron | 10.0% |
| !!! | ATAATTTTAGTATTGATATT+AGG | - | chr5_2:74642594-74642613 | Msa0788230:intron | 10.0% |
| !! | TTATTTCAATTATATCATTA+AGG | - | chr5_2:74642003-74642022 | Msa0788230:intron | 10.0% |
| !!! | ATAATTTTAGTATTGATATT+AGG | - | chr5_2:74642594-74642613 | Msa0788230:intron | 10.0% |
| !!! | TGTTTAAATTTTTTGAATGA+AGG | - | chr5_2:74642650-74642669 | Msa0788230:intron | 15.0% |
| !!! | TGTTTAAATTTTTTGAATGA+AGG | - | chr5_2:74642650-74642669 | Msa0788230:intron | 15.0% |
| !! | CTCTAATCATAAAAATCATA+TGG | - | chr5_2:74641641-74641660 | Msa0788230:CDS | 20.0% |
| !! | TTACTTATAGAATTATGAGT+TGG | - | chr5_2:74641971-74641990 | Msa0788230:CDS | 20.0% |
| !! | ATTATAGGTATATATGTTTG+TGG | + | chr5_2:74642147-74642166 | None:intergenic | 20.0% |
| !! | ATGCTTATATCTATATGAAT+AGG | - | chr5_2:74642207-74642226 | Msa0788230:CDS | 20.0% |
| !! | TGCTTATATCTATATGAATA+GGG | - | chr5_2:74642208-74642227 | Msa0788230:CDS | 20.0% |
| !!! | TTTCATAGACAAAGATTTTT+AGG | + | chr5_2:74642270-74642289 | None:intergenic | 20.0% |
| !! | ATTGAATAAAACAAGACATA+TGG | - | chr5_2:74642307-74642326 | Msa0788230:intron | 20.0% |
| !!! | TAAATTTTTTGAATGAAGGA+TGG | - | chr5_2:74642654-74642673 | Msa0788230:intron | 20.0% |
| !! | CTCTAATCATAAAAATCATA+TGG | - | chr5_2:74641641-74641660 | Msa0788230:CDS | 20.0% |
| !! | TTACTTATAGAATTATGAGT+TGG | - | chr5_2:74641971-74641990 | Msa0788230:CDS | 20.0% |
| !! | ATTATAGGTATATATGTTTG+TGG | + | chr5_2:74642147-74642166 | None:intergenic | 20.0% |
| !! | ATGCTTATATCTATATGAAT+AGG | - | chr5_2:74642207-74642226 | Msa0788230:CDS | 20.0% |
| !! | TGCTTATATCTATATGAATA+GGG | - | chr5_2:74642208-74642227 | Msa0788230:CDS | 20.0% |
| !!! | TTTCATAGACAAAGATTTTT+AGG | + | chr5_2:74642270-74642289 | None:intergenic | 20.0% |
| !! | ATTGAATAAAACAAGACATA+TGG | - | chr5_2:74642307-74642326 | Msa0788230:intron | 20.0% |
| !!! | TAAATTTTTTGAATGAAGGA+TGG | - | chr5_2:74642654-74642673 | Msa0788230:intron | 20.0% |
| ! | TTTAGATATCTTGAAAGCTT+CGG | + | chr5_2:74641536-74641555 | None:intergenic | 25.0% |
| ! | AAGCTTTCAAGATATCTAAA+TGG | - | chr5_2:74641536-74641555 | Msa0788230:CDS | 25.0% |
| ! | TCAAGATATCTAAATGGAAT+TGG | - | chr5_2:74641542-74641561 | Msa0788230:CDS | 25.0% |
| ! | ATCATAAAAATCATATGGTC+TGG | - | chr5_2:74641646-74641665 | Msa0788230:CDS | 25.0% |
| !! | GCATATAATTTGATAGTAAC+CGG | + | chr5_2:74641826-74641845 | None:intergenic | 25.0% |
| ! | CTTTCAGAATGTAACAAATT+AGG | + | chr5_2:74642124-74642143 | None:intergenic | 25.0% |
| !!! | GTCTATGAAAATGTTGTTTT+TGG | - | chr5_2:74642280-74642299 | Msa0788230:intron | 25.0% |
| ! | AACAAGACATATGGTTAAAT+AGG | - | chr5_2:74642316-74642335 | Msa0788230:intron | 25.0% |
| ! | GCAAACATATATTCAAACAT+AGG | + | chr5_2:74642819-74642838 | None:intergenic | 25.0% |
| ! | ACAGAAAAAATATACTTGAG+AGG | - | chr5_2:74643045-74643064 | Msa0788230:intron | 25.0% |
| ! | TTGGTAAAATACATGAAATC+TGG | - | chr5_2:74643135-74643154 | Msa0788230:CDS | 25.0% |
| ! | TGGTAAAATACATGAAATCT+GGG | - | chr5_2:74643136-74643155 | Msa0788230:CDS | 25.0% |
| ! | TTTAGATATCTTGAAAGCTT+CGG | + | chr5_2:74641536-74641555 | None:intergenic | 25.0% |
| ! | AAGCTTTCAAGATATCTAAA+TGG | - | chr5_2:74641536-74641555 | Msa0788230:CDS | 25.0% |
| ! | TCAAGATATCTAAATGGAAT+TGG | - | chr5_2:74641542-74641561 | Msa0788230:CDS | 25.0% |
| ! | ATCATAAAAATCATATGGTC+TGG | - | chr5_2:74641646-74641665 | Msa0788230:CDS | 25.0% |
| !! | GCATATAATTTGATAGTAAC+CGG | + | chr5_2:74641826-74641845 | None:intergenic | 25.0% |
| ! | CTTTCAGAATGTAACAAATT+AGG | + | chr5_2:74642124-74642143 | None:intergenic | 25.0% |
| !!! | GTCTATGAAAATGTTGTTTT+TGG | - | chr5_2:74642280-74642299 | Msa0788230:intron | 25.0% |
| ! | AACAAGACATATGGTTAAAT+AGG | - | chr5_2:74642316-74642335 | Msa0788230:intron | 25.0% |
| ! | GCAAACATATATTCAAACAT+AGG | + | chr5_2:74642819-74642838 | None:intergenic | 25.0% |
| ! | ACAGAAAAAATATACTTGAG+AGG | - | chr5_2:74643045-74643064 | Msa0788230:intron | 25.0% |
| ! | TTGGTAAAATACATGAAATC+TGG | - | chr5_2:74643135-74643154 | Msa0788230:CDS | 25.0% |
| ! | TGGTAAAATACATGAAATCT+GGG | - | chr5_2:74643136-74643155 | Msa0788230:CDS | 25.0% |
| CCAACGTTATGATGAATAAT+CGG | + | chr5_2:74641675-74641694 | None:intergenic | 30.0% | |
| !!! | TTTTTTACTTCCCAACACAA+AGG | - | chr5_2:74641767-74641786 | Msa0788230:CDS | 30.0% |
| AATTTGAAAGATGCAATTGG+TGG | + | chr5_2:74641868-74641887 | None:intergenic | 30.0% | |
| TGAAACTGATGCATTTAACT+GGG | - | chr5_2:74642411-74642430 | Msa0788230:intron | 30.0% | |
| TTCTCTTAACATTCGAACAA+GGG | + | chr5_2:74642712-74642731 | None:intergenic | 30.0% | |
| TTTCTCTTAACATTCGAACA+AGG | + | chr5_2:74642713-74642732 | None:intergenic | 30.0% | |
| TATATTCAAACATAGGTGAC+CGG | + | chr5_2:74642812-74642831 | None:intergenic | 30.0% | |
| TATGTTTGCACAAGATTCTA+AGG | - | chr5_2:74642830-74642849 | Msa0788230:CDS | 30.0% | |
| ATTGATAGAAATATGCAGCA+TGG | + | chr5_2:74643073-74643092 | None:intergenic | 30.0% | |
| ! | TTTTCTTGCCTTCCTAAAAT+TGG | - | chr5_2:74643163-74643182 | Msa0788230:CDS | 30.0% |
| CCAACGTTATGATGAATAAT+CGG | + | chr5_2:74641675-74641694 | None:intergenic | 30.0% | |
| !!! | TTTTTTACTTCCCAACACAA+AGG | - | chr5_2:74641767-74641786 | Msa0788230:CDS | 30.0% |
| AATTTGAAAGATGCAATTGG+TGG | + | chr5_2:74641868-74641887 | None:intergenic | 30.0% | |
| TGAAACTGATGCATTTAACT+GGG | - | chr5_2:74642411-74642430 | Msa0788230:intron | 30.0% | |
| TTCTCTTAACATTCGAACAA+GGG | + | chr5_2:74642712-74642731 | None:intergenic | 30.0% | |
| TTTCTCTTAACATTCGAACA+AGG | + | chr5_2:74642713-74642732 | None:intergenic | 30.0% | |
| TATATTCAAACATAGGTGAC+CGG | + | chr5_2:74642812-74642831 | None:intergenic | 30.0% | |
| TATGTTTGCACAAGATTCTA+AGG | - | chr5_2:74642830-74642849 | Msa0788230:CDS | 30.0% | |
| ATTGATAGAAATATGCAGCA+TGG | + | chr5_2:74643073-74643092 | None:intergenic | 30.0% | |
| ! | TTTTCTTGCCTTCCTAAAAT+TGG | - | chr5_2:74643163-74643182 | Msa0788230:CDS | 30.0% |
| ! | GTTTTACTCTCCATTCAAAG+TGG | - | chr5_2:74641432-74641451 | Msa0788230:CDS | 35.0% |
| CCGATTATTCATCATAACGT+TGG | - | chr5_2:74641672-74641691 | Msa0788230:CDS | 35.0% | |
| ATGATATGTGCCTTTGTGTT+GGG | + | chr5_2:74641780-74641799 | None:intergenic | 35.0% | |
| AATGATATGTGCCTTTGTGT+TGG | + | chr5_2:74641781-74641800 | None:intergenic | 35.0% | |
| ! | TAATTTGATAGTAACCGGAC+TGG | + | chr5_2:74641821-74641840 | None:intergenic | 35.0% |
| !! | TGCAATTGGTGGATTATTTG+TGG | + | chr5_2:74641857-74641876 | None:intergenic | 35.0% |
| CGGAATTTGAAAGATGCAAT+TGG | + | chr5_2:74641871-74641890 | None:intergenic | 35.0% | |
| TTCCGTATTCTTGACTCTAT+CGG | - | chr5_2:74641886-74641905 | Msa0788230:CDS | 35.0% | |
| TTCCGATAGAGTCAAGAATA+CGG | + | chr5_2:74641891-74641910 | None:intergenic | 35.0% | |
| CTTGACTCTATCGGAAAAAA+TGG | - | chr5_2:74641895-74641914 | Msa0788230:CDS | 35.0% | |
| TATGAATAGGGACTATGAGT+TGG | - | chr5_2:74642220-74642239 | Msa0788230:CDS | 35.0% | |
| ! | CTTTTTCTTCTGCATCATTG+TGG | + | chr5_2:74642375-74642394 | None:intergenic | 35.0% |
| GTTAAATGCATCAGTTTCAC+TGG | + | chr5_2:74642410-74642429 | None:intergenic | 35.0% | |
| GTGAAACTGATGCATTTAAC+TGG | - | chr5_2:74642410-74642429 | Msa0788230:intron | 35.0% | |
| TAGGAATTCAACTTCAACAC+AGG | + | chr5_2:74642470-74642489 | None:intergenic | 35.0% | |
| GATTGAATGCACGTACATTT+GGG | + | chr5_2:74642510-74642529 | None:intergenic | 35.0% | |
| TGATTGAATGCACGTACATT+TGG | + | chr5_2:74642511-74642530 | None:intergenic | 35.0% | |
| ATGGAGAAACTAACTCAACT+AGG | - | chr5_2:74642673-74642692 | Msa0788230:intron | 35.0% | |
| TACAATCAAGCTCGTATCAT+CGG | - | chr5_2:74642749-74642768 | Msa0788230:intron | 35.0% | |
| ATATTCAAACATAGGTGACC+GGG | + | chr5_2:74642811-74642830 | None:intergenic | 35.0% | |
| ATGAATGCTTGACAAACTTC+AGG | + | chr5_2:74642894-74642913 | None:intergenic | 35.0% | |
| GAATCATAGTTTCGAGCTAT+TGG | - | chr5_2:74642953-74642972 | Msa0788230:intron | 35.0% | |
| GCTCAATATCTAGTGGAATT+TGG | - | chr5_2:74643116-74643135 | Msa0788230:CDS | 35.0% | |
| !! | ATCATCTGCCAATTTTAGGA+AGG | + | chr5_2:74643174-74643193 | None:intergenic | 35.0% |
| ! | CATCATCATCTGCCAATTTT+AGG | + | chr5_2:74643178-74643197 | None:intergenic | 35.0% |
| ! | GTTTTACTCTCCATTCAAAG+TGG | - | chr5_2:74641432-74641451 | Msa0788230:CDS | 35.0% |
| CCGATTATTCATCATAACGT+TGG | - | chr5_2:74641672-74641691 | Msa0788230:CDS | 35.0% | |
| ATGATATGTGCCTTTGTGTT+GGG | + | chr5_2:74641780-74641799 | None:intergenic | 35.0% | |
| AATGATATGTGCCTTTGTGT+TGG | + | chr5_2:74641781-74641800 | None:intergenic | 35.0% | |
| ! | TAATTTGATAGTAACCGGAC+TGG | + | chr5_2:74641821-74641840 | None:intergenic | 35.0% |
| !! | TGCAATTGGTGGATTATTTG+TGG | + | chr5_2:74641857-74641876 | None:intergenic | 35.0% |
| CGGAATTTGAAAGATGCAAT+TGG | + | chr5_2:74641871-74641890 | None:intergenic | 35.0% | |
| TTCCGTATTCTTGACTCTAT+CGG | - | chr5_2:74641886-74641905 | Msa0788230:CDS | 35.0% | |
| TTCCGATAGAGTCAAGAATA+CGG | + | chr5_2:74641891-74641910 | None:intergenic | 35.0% | |
| CTTGACTCTATCGGAAAAAA+TGG | - | chr5_2:74641895-74641914 | Msa0788230:CDS | 35.0% | |
| TATGAATAGGGACTATGAGT+TGG | - | chr5_2:74642220-74642239 | Msa0788230:CDS | 35.0% | |
| ! | CTTTTTCTTCTGCATCATTG+TGG | + | chr5_2:74642375-74642394 | None:intergenic | 35.0% |
| GTTAAATGCATCAGTTTCAC+TGG | + | chr5_2:74642410-74642429 | None:intergenic | 35.0% | |
| GTGAAACTGATGCATTTAAC+TGG | - | chr5_2:74642410-74642429 | Msa0788230:intron | 35.0% | |
| TAGGAATTCAACTTCAACAC+AGG | + | chr5_2:74642470-74642489 | None:intergenic | 35.0% | |
| GATTGAATGCACGTACATTT+GGG | + | chr5_2:74642510-74642529 | None:intergenic | 35.0% | |
| TGATTGAATGCACGTACATT+TGG | + | chr5_2:74642511-74642530 | None:intergenic | 35.0% | |
| ATGGAGAAACTAACTCAACT+AGG | - | chr5_2:74642673-74642692 | Msa0788230:intron | 35.0% | |
| TACAATCAAGCTCGTATCAT+CGG | - | chr5_2:74642749-74642768 | Msa0788230:intron | 35.0% | |
| ATATTCAAACATAGGTGACC+GGG | + | chr5_2:74642811-74642830 | None:intergenic | 35.0% | |
| ATGAATGCTTGACAAACTTC+AGG | + | chr5_2:74642894-74642913 | None:intergenic | 35.0% | |
| GAATCATAGTTTCGAGCTAT+TGG | - | chr5_2:74642953-74642972 | Msa0788230:intron | 35.0% | |
| GCTCAATATCTAGTGGAATT+TGG | - | chr5_2:74643116-74643135 | Msa0788230:CDS | 35.0% | |
| !! | ATCATCTGCCAATTTTAGGA+AGG | + | chr5_2:74643174-74643193 | None:intergenic | 35.0% |
| ! | CATCATCATCTGCCAATTTT+AGG | + | chr5_2:74643178-74643197 | None:intergenic | 35.0% |
| GATGTGTGGATAAAACTGTG+GGG | + | chr5_2:74641514-74641533 | None:intergenic | 40.0% | |
| GGATGTGTGGATAAAACTGT+GGG | + | chr5_2:74641515-74641534 | None:intergenic | 40.0% | |
| ! | AAAGGCACATATCATTCTCG+AGG | - | chr5_2:74641785-74641804 | Msa0788230:CDS | 40.0% |
| AAGGCACATATCATTCTCGA+GGG | - | chr5_2:74641786-74641805 | Msa0788230:CDS | 40.0% | |
| TCTGCATCATTGTGGAAAAG+AGG | + | chr5_2:74642367-74642386 | None:intergenic | 40.0% | |
| ACACAGGATGTTGTAACATC+AGG | + | chr5_2:74642454-74642473 | None:intergenic | 40.0% | |
| TTGGTTGCTGCTGAGAAATA+CGG | - | chr5_2:74642972-74642991 | Msa0788230:intron | 40.0% | |
| GCGCAACTAATCTTCAAGTA+GGG | + | chr5_2:74643098-74643117 | None:intergenic | 40.0% | |
| AGCGCAACTAATCTTCAAGT+AGG | + | chr5_2:74643099-74643118 | None:intergenic | 40.0% | |
| TAGTTGCGCTCAATATCTAG+TGG | - | chr5_2:74643109-74643128 | Msa0788230:CDS | 40.0% | |
| GATGTGTGGATAAAACTGTG+GGG | + | chr5_2:74641514-74641533 | None:intergenic | 40.0% | |
| GGATGTGTGGATAAAACTGT+GGG | + | chr5_2:74641515-74641534 | None:intergenic | 40.0% | |
| ! | AAAGGCACATATCATTCTCG+AGG | - | chr5_2:74641785-74641804 | Msa0788230:CDS | 40.0% |
| AAGGCACATATCATTCTCGA+GGG | - | chr5_2:74641786-74641805 | Msa0788230:CDS | 40.0% | |
| TCTGCATCATTGTGGAAAAG+AGG | + | chr5_2:74642367-74642386 | None:intergenic | 40.0% | |
| ACACAGGATGTTGTAACATC+AGG | + | chr5_2:74642454-74642473 | None:intergenic | 40.0% | |
| TTGGTTGCTGCTGAGAAATA+CGG | - | chr5_2:74642972-74642991 | Msa0788230:intron | 40.0% | |
| GCGCAACTAATCTTCAAGTA+GGG | + | chr5_2:74643098-74643117 | None:intergenic | 40.0% | |
| AGCGCAACTAATCTTCAAGT+AGG | + | chr5_2:74643099-74643118 | None:intergenic | 40.0% | |
| TAGTTGCGCTCAATATCTAG+TGG | - | chr5_2:74643109-74643128 | Msa0788230:CDS | 40.0% | |
| TCCATTCAAAGTGGAATCCG+TGG | - | chr5_2:74641441-74641460 | Msa0788230:CDS | 45.0% | |
| CCATTCAAAGTGGAATCCGT+GGG | - | chr5_2:74641442-74641461 | Msa0788230:CDS | 45.0% | |
| CGGATGTGTGGATAAAACTG+TGG | + | chr5_2:74641516-74641535 | None:intergenic | 45.0% | |
| TCTTGAAAGCTTCGGATGTG+TGG | + | chr5_2:74641528-74641547 | None:intergenic | 45.0% | |
| ! | GATAGTAACCGGACTGGAAA+GGG | + | chr5_2:74641815-74641834 | None:intergenic | 45.0% |
| ! | TGATAGTAACCGGACTGGAA+AGG | + | chr5_2:74641816-74641835 | None:intergenic | 45.0% |
| TGGAATAACCTTCGCAGAGA+CGG | - | chr5_2:74641915-74641934 | Msa0788230:CDS | 45.0% | |
| !!! | TTTTTTACCCGTCTCTGCGA+AGG | + | chr5_2:74641926-74641945 | None:intergenic | 45.0% |
| GGTTTGCAGTCTTGAGATCT+AGG | + | chr5_2:74642489-74642508 | None:intergenic | 45.0% | |
| TCCATTCAAAGTGGAATCCG+TGG | - | chr5_2:74641441-74641460 | Msa0788230:CDS | 45.0% | |
| CCATTCAAAGTGGAATCCGT+GGG | - | chr5_2:74641442-74641461 | Msa0788230:CDS | 45.0% | |
| CGGATGTGTGGATAAAACTG+TGG | + | chr5_2:74641516-74641535 | None:intergenic | 45.0% | |
| TCTTGAAAGCTTCGGATGTG+TGG | + | chr5_2:74641528-74641547 | None:intergenic | 45.0% | |
| ! | GATAGTAACCGGACTGGAAA+GGG | + | chr5_2:74641815-74641834 | None:intergenic | 45.0% |
| ! | TGATAGTAACCGGACTGGAA+AGG | + | chr5_2:74641816-74641835 | None:intergenic | 45.0% |
| TGGAATAACCTTCGCAGAGA+CGG | - | chr5_2:74641915-74641934 | Msa0788230:CDS | 45.0% | |
| !!! | TTTTTTACCCGTCTCTGCGA+AGG | + | chr5_2:74641926-74641945 | None:intergenic | 45.0% |
| GGTTTGCAGTCTTGAGATCT+AGG | + | chr5_2:74642489-74642508 | None:intergenic | 45.0% | |
| !!! | TTTATTTTGATTAAAATTAT+AGG | + | chr5_2:74642162-74642181 | None:intergenic | 5.0% |
| !!! | TTTATTTTGATTAAAATTAT+AGG | + | chr5_2:74642162-74642181 | None:intergenic | 5.0% |
| CCCACGGATTCCACTTTGAA+TGG | + | chr5_2:74641445-74641464 | None:intergenic | 50.0% | |
| GGAATAACCTTCGCAGAGAC+GGG | - | chr5_2:74641916-74641935 | Msa0788230:CDS | 50.0% | |
| GCTTGATTGTAGCGTCTGTG+TGG | + | chr5_2:74642740-74642759 | None:intergenic | 50.0% | |
| ATCTAGCTGTTCTTGCTGCC+CGG | - | chr5_2:74642790-74642809 | Msa0788230:CDS | 50.0% | |
| CCCACGGATTCCACTTTGAA+TGG | + | chr5_2:74641445-74641464 | None:intergenic | 50.0% | |
| GGAATAACCTTCGCAGAGAC+GGG | - | chr5_2:74641916-74641935 | Msa0788230:CDS | 50.0% | |
| GCTTGATTGTAGCGTCTGTG+TGG | + | chr5_2:74642740-74642759 | None:intergenic | 50.0% | |
| ATCTAGCTGTTCTTGCTGCC+CGG | - | chr5_2:74642790-74642809 | Msa0788230:CDS | 50.0% | |
| CCATTGAGCGACGTAACCCA+CGG | + | chr5_2:74641461-74641480 | None:intergenic | 55.0% | |
| GAGGGATTCCCTTTCCAGTC+CGG | - | chr5_2:74641804-74641823 | Msa0788230:CDS | 55.0% | |
| CGGCGTTAGTGACTTGAGAG+AGG | - | chr5_2:74642992-74643011 | Msa0788230:intron | 55.0% | |
| CCATTGAGCGACGTAACCCA+CGG | + | chr5_2:74641461-74641480 | None:intergenic | 55.0% | |
| GAGGGATTCCCTTTCCAGTC+CGG | - | chr5_2:74641804-74641823 | Msa0788230:CDS | 55.0% | |
| CGGCGTTAGTGACTTGAGAG+AGG | - | chr5_2:74642992-74643011 | Msa0788230:intron | 55.0% | |
| ! | CCGTGGGTTACGTCGCTCAA+TGG | - | chr5_2:74641458-74641477 | Msa0788230:CDS | 60.0% |
| ! | CCGTGGGTTACGTCGCTCAA+TGG | - | chr5_2:74641458-74641477 | Msa0788230:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 74641430 | 74643232 | 74641430 | ID=Msa0788230;Name=Msa0788230 |
| chr5_2 | mRNA | 74641430 | 74643232 | 74641430 | ID=Msa0788230-mRNA-1;Parent=Msa0788230;Name=Msa0788230-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|0.33|0.5|4|0|307 |
| chr5_2 | exon | 74643099 | 74643232 | 74643099 | ID=Msa0788230-mRNA-1:exon:22803;Parent=Msa0788230-mRNA-1 |
| chr5_2 | exon | 74642773 | 74642873 | 74642773 | ID=Msa0788230-mRNA-1:exon:22802;Parent=Msa0788230-mRNA-1 |
| chr5_2 | exon | 74642149 | 74642276 | 74642149 | ID=Msa0788230-mRNA-1:exon:22801;Parent=Msa0788230-mRNA-1 |
| chr5_2 | exon | 74641430 | 74641990 | 74641430 | ID=Msa0788230-mRNA-1:exon:22800;Parent=Msa0788230-mRNA-1 |
| chr5_2 | CDS | 74643099 | 74643232 | 74643099 | ID=Msa0788230-mRNA-1:cds;Parent=Msa0788230-mRNA-1 |
| chr5_2 | CDS | 74642773 | 74642873 | 74642773 | ID=Msa0788230-mRNA-1:cds;Parent=Msa0788230-mRNA-1 |
| chr5_2 | CDS | 74642149 | 74642276 | 74642149 | ID=Msa0788230-mRNA-1:cds;Parent=Msa0788230-mRNA-1 |
| chr5_2 | CDS | 74641430 | 74641990 | 74641430 | ID=Msa0788230-mRNA-1:cds;Parent=Msa0788230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
