Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0788530 | KEH28470.1 | 93.103 | 232 | 16 | 0 | 5 | 236 | 40 | 271 | 1.00e-157 | 448 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0788530 | sp|Q680K8|Y1576_ARATH | 58.079 | 229 | 95 | 1 | 7 | 235 | 100 | 327 | 3.19e-91 | 274 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0788530 | A0A072URH6 | 93.103 | 232 | 16 | 0 | 5 | 236 | 40 | 271 | 4.78e-158 | 448 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0788530 | TR | TRAF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0788530 | MtrunA17_Chr5g0447111 | 93.103 | 232 | 16 | 0 | 5 | 236 | 99 | 330 | 2.81e-160 | 446 |
| Msa0788530 | MtrunA17_Chr3g0103031 | 67.672 | 232 | 73 | 2 | 5 | 235 | 98 | 328 | 5.36e-108 | 314 |
| Msa0788530 | MtrunA17_Chr1g0159831 | 45.798 | 238 | 123 | 4 | 1 | 235 | 96 | 330 | 2.13e-70 | 218 |
| Msa0788530 | MtrunA17_Chr3g0124921 | 49.130 | 230 | 113 | 4 | 5 | 231 | 93 | 321 | 2.10e-68 | 213 |
| Msa0788530 | MtrunA17_Chr5g0447191 | 54.913 | 173 | 77 | 1 | 60 | 231 | 15 | 187 | 1.50e-61 | 191 |
| Msa0788530 | MtrunA17_Chr4g0029841 | 32.159 | 227 | 130 | 5 | 3 | 229 | 74 | 276 | 8.28e-28 | 107 |
| Msa0788530 | MtrunA17_Chr3g0114411 | 34.337 | 166 | 101 | 4 | 41 | 200 | 70 | 233 | 1.11e-13 | 68.6 |
| Msa0788530 | MtrunA17_Chr3g0125321 | 28.289 | 152 | 103 | 3 | 82 | 231 | 94 | 241 | 3.10e-12 | 64.3 |
| Msa0788530 | MtrunA17_Chr7g0259851 | 28.462 | 130 | 91 | 2 | 71 | 200 | 526 | 653 | 5.96e-12 | 64.7 |
| Msa0788530 | MtrunA17_Chr5g0394261 | 27.660 | 141 | 99 | 3 | 71 | 210 | 536 | 674 | 9.02e-12 | 64.3 |
| Msa0788530 | MtrunA17_Chr1g0185861 | 25.749 | 167 | 112 | 2 | 45 | 200 | 185 | 350 | 1.20e-11 | 63.5 |
| Msa0788530 | MtrunA17_Chr7g0259501 | 26.667 | 150 | 98 | 2 | 61 | 199 | 197 | 345 | 1.31e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0788530 | AT1G55760.1 | 58.079 | 229 | 95 | 1 | 7 | 235 | 100 | 327 | 3.25e-92 | 274 |
| Msa0788530 | AT1G21780.2 | 51.304 | 230 | 110 | 2 | 7 | 235 | 96 | 324 | 2.67e-77 | 236 |
| Msa0788530 | AT1G21780.1 | 51.304 | 230 | 110 | 2 | 7 | 235 | 96 | 324 | 2.67e-77 | 236 |
| Msa0788530 | AT1G01640.1 | 30.811 | 185 | 124 | 4 | 53 | 235 | 6 | 188 | 2.50e-16 | 75.1 |
| Msa0788530 | AT1G01640.2 | 30.178 | 169 | 114 | 4 | 69 | 235 | 1 | 167 | 1.12e-14 | 70.5 |
| Msa0788530 | AT3G56230.1 | 32.847 | 137 | 89 | 3 | 67 | 200 | 107 | 243 | 2.06e-14 | 71.2 |
| Msa0788530 | AT2G30600.4 | 28.931 | 159 | 103 | 4 | 30 | 183 | 315 | 468 | 3.73e-13 | 68.9 |
| Msa0788530 | AT2G30600.1 | 28.931 | 159 | 103 | 4 | 30 | 183 | 315 | 468 | 3.73e-13 | 68.9 |
| Msa0788530 | AT2G30600.3 | 28.931 | 159 | 103 | 4 | 30 | 183 | 315 | 468 | 3.73e-13 | 68.9 |
| Msa0788530 | AT2G30600.2 | 28.931 | 159 | 103 | 4 | 30 | 183 | 315 | 468 | 3.73e-13 | 68.9 |
| Msa0788530 | AT2G30600.6 | 28.931 | 159 | 103 | 4 | 30 | 183 | 315 | 468 | 5.20e-13 | 68.6 |
| Msa0788530 | AT2G39760.2 | 28.049 | 164 | 104 | 3 | 47 | 199 | 172 | 332 | 1.48e-12 | 66.6 |
| Msa0788530 | AT2G39760.4 | 28.049 | 164 | 104 | 3 | 47 | 199 | 172 | 332 | 1.88e-12 | 66.2 |
| Msa0788530 | AT2G39760.3 | 28.049 | 164 | 104 | 3 | 47 | 199 | 172 | 332 | 1.88e-12 | 66.2 |
| Msa0788530 | AT1G05690.1 | 26.012 | 173 | 114 | 6 | 45 | 209 | 29 | 195 | 2.45e-12 | 65.9 |
| Msa0788530 | AT2G39760.1 | 28.049 | 164 | 104 | 3 | 47 | 199 | 172 | 332 | 4.65e-12 | 65.1 |
| Msa0788530 | AT4G08455.1 | 37.500 | 96 | 55 | 2 | 83 | 176 | 107 | 199 | 7.49e-12 | 63.9 |
| Msa0788530 | AT2G30600.5 | 28.221 | 163 | 102 | 5 | 30 | 187 | 315 | 467 | 8.82e-12 | 64.7 |
Find 34 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAATTGACATTGAGTTTC+TGG | 0.099574 | 5_2:-75289601 | Msa0788530:CDS |
| GTGCAATATCTTGTGAAATT+TGG | 0.214576 | 5_2:-75288818 | Msa0788530:CDS |
| ATTGATACAAAGATGCAATT+TGG | 0.251499 | 5_2:+75288864 | None:intergenic |
| TGACATGTCGGTGATGTTTA+TGG | 0.257723 | 5_2:+75289066 | None:intergenic |
| GTGGGGAAGCTTGCTCTATT+TGG | 0.265550 | 5_2:-75289291 | Msa0788530:CDS |
| GATAGCTTTGTGTGGGAGAT+TGG | 0.337706 | 5_2:-75289645 | Msa0788530:CDS |
| AGAATTTCTTATACATAGAT+TGG | 0.343658 | 5_2:-75288990 | Msa0788530:CDS |
| ACTTGTCAGCCGCATGTAAT+AGG | 0.362904 | 5_2:+75288966 | None:intergenic |
| TCAAAGAAATTCTTGATGCT+TGG | 0.368629 | 5_2:-75288721 | Msa0788530:CDS |
| TCGTAATTACCATGAATTCA+TGG | 0.371887 | 5_2:+75291902 | None:intergenic |
| CAACTAGAGCCATGAATTCA+TGG | 0.372401 | 5_2:-75291911 | None:intergenic |
| CGTTGATTGTTATGTCTGTA+TGG | 0.409784 | 5_2:+75289194 | None:intergenic |
| AAAGAAAATTTATAAACGTC+TGG | 0.434882 | 5_2:+75289032 | None:intergenic |
| TTCTCCTATCATTCGACCTA+GGG | 0.439636 | 5_2:+75289222 | None:intergenic |
| ATGAGCTCTTATGCTTCCTT+CGG | 0.452327 | 5_2:+75289165 | None:intergenic |
| GCTTGCTCTATTTGGCCTGA+TGG | 0.459699 | 5_2:-75289283 | Msa0788530:CDS |
| TCATTCGACCTAGGGATTCA+AGG | 0.469041 | 5_2:+75289230 | None:intergenic |
| GAATCCCTAGGTCGAATGAT+AGG | 0.475257 | 5_2:-75289226 | Msa0788530:CDS |
| GGCAAAATATATGATATTCA+AGG | 0.488841 | 5_2:-75288797 | Msa0788530:CDS |
| CTCGGCTGCATAAATCCATC+AGG | 0.508065 | 5_2:+75289268 | None:intergenic |
| ACCTAGGGATTCAAGGGCCG+CGG | 0.517209 | 5_2:+75289237 | None:intergenic |
| TTTCTCCTATCATTCGACCT+AGG | 0.524682 | 5_2:+75289221 | None:intergenic |
| GAGATTGGAGTTCCATTACC+TGG | 0.545273 | 5_2:-75289630 | Msa0788530:CDS |
| CATTCGACCTAGGGATTCAA+GGG | 0.553806 | 5_2:+75289231 | None:intergenic |
| CAATAAGGATAGCTTTGTGT+GGG | 0.566302 | 5_2:-75289652 | Msa0788530:CDS |
| TTTGAAAATTACATGTCCAA+AGG | 0.574384 | 5_2:-75289577 | Msa0788530:intron |
| GCAATAAGGATAGCTTTGTG+TGG | 0.617349 | 5_2:-75289653 | Msa0788530:CDS |
| ACAATCAACGTCAATTCCGA+AGG | 0.618813 | 5_2:-75289181 | Msa0788530:CDS |
| GAAAGATTGAATTGACATGT+CGG | 0.685189 | 5_2:+75289054 | None:intergenic |
| GTCAAACACAGGTGATTGTG+AGG | 0.685218 | 5_2:+75289129 | None:intergenic |
| TAGATTGGACCTATTACATG+CGG | 0.685610 | 5_2:-75288975 | Msa0788530:CDS |
| TGATATCTATGAGTTAAGAG+AGG | 0.687061 | 5_2:-75288942 | Msa0788530:CDS |
| GCAGCCGAGACAAAATGCCG+CGG | 0.694629 | 5_2:-75289254 | Msa0788530:CDS |
| GAAAACATGCTGTCAAACAC+AGG | 0.701282 | 5_2:+75289118 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAATAATTAAATAAAA+AGG | - | chr5_2:75289740-75289759 | Msa0788530:intron | 0.0% |
| !!! | TAGAAATATATTTGTTAAAT+TGG | + | chr5_2:75289639-75289658 | None:intergenic | 10.0% |
| !! | AGTATAATATATATGTTATT+TGG | + | chr5_2:75289664-75289683 | None:intergenic | 10.0% |
| !! | TATTTAAATATGTTATATGT+TGG | + | chr5_2:75289695-75289714 | None:intergenic | 10.0% |
| !! | AAAATAATTAAATAAAAAGG+AGG | - | chr5_2:75289743-75289762 | Msa0788530:intron | 10.0% |
| !! | AAATAATTAAATAAAAAGGA+GGG | - | chr5_2:75289744-75289763 | Msa0788530:intron | 10.0% |
| !! | TAAACAAAATATAAAGTAAA+GGG | + | chr5_2:75291142-75291161 | None:intergenic | 10.0% |
| !! | AGTATTTGGTATTATAAATA+AGG | + | chr5_2:75289429-75289448 | None:intergenic | 15.0% |
| !! | GAAAATAAAATAAATATACG+AGG | + | chr5_2:75289578-75289597 | None:intergenic | 15.0% |
| !! | TTATATAAAGTAACATAGAT+AGG | - | chr5_2:75289825-75289844 | Msa0788530:intron | 15.0% |
| !! | TATATAAAGTAACATAGATA+GGG | - | chr5_2:75289826-75289845 | Msa0788530:intron | 15.0% |
| !!! | ATATACTCTTTGTTTTTTAA+TGG | + | chr5_2:75290098-75290117 | None:intergenic | 15.0% |
| !! | AAATAAATATTACAAGATGT+TGG | + | chr5_2:75290297-75290316 | None:intergenic | 15.0% |
| !!! | ATTTGATAAATTTGTTAAGT+TGG | + | chr5_2:75290419-75290438 | None:intergenic | 15.0% |
| !! | CTAAACAAAATATAAAGTAA+AGG | + | chr5_2:75291143-75291162 | None:intergenic | 15.0% |
| !!! | ATCAAGGAAAATTTTAAATT+AGG | + | chr5_2:75291242-75291261 | None:intergenic | 15.0% |
| !!! | ACGTTTATAAATTTTCTTTA+TGG | - | chr5_2:75291536-75291555 | Msa0788530:intron | 15.0% |
| !! | TTTAGTAGAATTTGATTACT+TGG | + | chr5_2:75288793-75288812 | None:intergenic | 20.0% |
| !! | TCAAATTCTACTAAAAACAA+AGG | - | chr5_2:75288798-75288817 | Msa0788530:CDS | 20.0% |
| !! | CAAATTCTACTAAAAACAAA+GGG | - | chr5_2:75288799-75288818 | Msa0788530:CDS | 20.0% |
| !! | TATTATAAATAAGGAAGCTT+AGG | + | chr5_2:75289420-75289439 | None:intergenic | 20.0% |
| !! | AGAAAGAAGAATAAGTTATT+GGG | + | chr5_2:75289471-75289490 | None:intergenic | 20.0% |
| !! | TAGAAAGAAGAATAAGTTAT+TGG | + | chr5_2:75289472-75289491 | None:intergenic | 20.0% |
| !!! | GAAAACAATGTTTAGTTTTA+TGG | - | chr5_2:75289940-75289959 | Msa0788530:intron | 20.0% |
| !!! | AAAAAATAAATCCTGAGTTT+TGG | - | chr5_2:75290034-75290053 | Msa0788530:intron | 20.0% |
| !! | AAAAAAATGAGTGAAAATAG+TGG | + | chr5_2:75290535-75290554 | None:intergenic | 20.0% |
| !! | ATTATATACTTACATACCTT+TGG | + | chr5_2:75291006-75291025 | None:intergenic | 20.0% |
| !! | ATGGATAACTAATAAAAGTA+TGG | + | chr5_2:75291033-75291052 | None:intergenic | 20.0% |
| !!! | ATTTTCCTTGATTTGAATAA+AGG | - | chr5_2:75291250-75291269 | Msa0788530:intron | 20.0% |
| !!! | TTTTCCTTGATTTGAATAAA+GGG | - | chr5_2:75291251-75291270 | Msa0788530:intron | 20.0% |
| !! | AAAGAAAATTTATAAACGTC+TGG | + | chr5_2:75291535-75291554 | None:intergenic | 20.0% |
| !! | AGAATTTCTTATACATAGAT+TGG | - | chr5_2:75291574-75291593 | Msa0788530:intron | 20.0% |
| !!! | TCTTCCAAATTTTTAAAGAT+AGG | - | chr5_2:75291881-75291900 | Msa0788530:intron | 20.0% |
| !!! | TCTTCCTATCTTTAAAAATT+TGG | + | chr5_2:75291888-75291907 | None:intergenic | 20.0% |
| ! | TTACGAAGATTAGATCTAAA+TGG | - | chr5_2:75288679-75288698 | Msa0788530:three_prime_UTR | 25.0% |
| ! | AAGTCCTTTATATGTAGTAT+TGG | + | chr5_2:75289033-75289052 | None:intergenic | 25.0% |
| ! | GTAAATTCATGATTACAACA+TGG | + | chr5_2:75289093-75289112 | None:intergenic | 25.0% |
| ! | ATCATGAATTTACTCATCAA+AGG | - | chr5_2:75289100-75289119 | Msa0788530:CDS | 25.0% |
| !!! | GAGAGTTTTATTCATCATAA+GGG | + | chr5_2:75289179-75289198 | None:intergenic | 25.0% |
| ! | GACTATCTTTCACTAATATT+AGG | + | chr5_2:75289254-75289273 | None:intergenic | 25.0% |
| !! | AGAAAAACAATCTAAGGTAA+GGG | + | chr5_2:75289280-75289299 | None:intergenic | 25.0% |
| ! | GATTTCAGAAAAACAATCTA+AGG | + | chr5_2:75289286-75289305 | None:intergenic | 25.0% |
| !!! | TTTTACATTAAACCGCTTTT+TGG | + | chr5_2:75289387-75289406 | None:intergenic | 25.0% |
| ! | ATTGTTAGTGTAAGTAGAAT+TGG | + | chr5_2:75289504-75289523 | None:intergenic | 25.0% |
| ! | ATGTGATATTCTATATGAGA+AGG | + | chr5_2:75290134-75290153 | None:intergenic | 25.0% |
| ! | TTCATGTCAAAATGATTTGA+AGG | + | chr5_2:75290252-75290271 | None:intergenic | 25.0% |
| !!! | AATTTGTTAAGTTGGTTATG+TGG | + | chr5_2:75290411-75290430 | None:intergenic | 25.0% |
| ! | TAGATGAGAAAAATGTTACA+TGG | + | chr5_2:75290492-75290511 | None:intergenic | 25.0% |
| ! | GTAAAGATTTCTTACATGAT+AGG | + | chr5_2:75290566-75290585 | None:intergenic | 25.0% |
| ! | TAGCAGAATAATGAAACAAA+AGG | + | chr5_2:75290679-75290698 | None:intergenic | 25.0% |
| ! | NGATAAACTTCTTAGCAATA+AGG | - | chr5_2:75290897-75290916 | Msa0788530:intron | 25.0% |
| !! | ATTATGAATTTTCCAGGTAA+TGG | + | chr5_2:75290949-75290968 | None:intergenic | 25.0% |
| !! | ATGTCAATTATGAATTTTCC+AGG | + | chr5_2:75290955-75290974 | None:intergenic | 25.0% |
| ! | TTTGAAAATTACATGTCCAA+AGG | - | chr5_2:75290987-75291006 | Msa0788530:intron | 25.0% |
| !! | ACTTTTATTAGTTATCCATG+TGG | - | chr5_2:75291034-75291053 | Msa0788530:intron | 25.0% |
| ! | TTCAATACATTCATGAATCA+TGG | + | chr5_2:75291088-75291107 | None:intergenic | 25.0% |
| !!! | ATAATCATAGTATTGATCTG+AGG | - | chr5_2:75291193-75291212 | Msa0788530:intron | 25.0% |
| !!! | TAATCATAGTATTGATCTGA+GGG | - | chr5_2:75291194-75291213 | Msa0788530:intron | 25.0% |
| ! | ATTGATACAAAGATGCAATT+TGG | + | chr5_2:75291703-75291722 | None:intergenic | 25.0% |
| ! | GGCAAAATATATGATATTCA+AGG | - | chr5_2:75291767-75291786 | Msa0788530:intron | 25.0% |
| AAACAAAGGGAGATAACAAT+TGG | - | chr5_2:75288812-75288831 | Msa0788530:CDS | 30.0% | |
| CATCTAATTATATCGACCTA+AGG | - | chr5_2:75288852-75288871 | Msa0788530:CDS | 30.0% | |
| AACTGGAAACAAAAGAAGTA+TGG | + | chr5_2:75288879-75288898 | None:intergenic | 30.0% | |
| CACTCTACATATAATCATAC+AGG | - | chr5_2:75288908-75288927 | Msa0788530:CDS | 30.0% | |
| ! | TGAAGGGTTGTTAATTTTTG+TGG | + | chr5_2:75289136-75289155 | None:intergenic | 30.0% |
| !!! | GGAGAGTTTTATTCATCATA+AGG | + | chr5_2:75289180-75289199 | None:intergenic | 30.0% |
| ! | CAGAAAAACAATCTAAGGTA+AGG | + | chr5_2:75289281-75289300 | None:intergenic | 30.0% |
| !! | ATAGGTTTAGGAAGAGTATT+TGG | + | chr5_2:75289443-75289462 | None:intergenic | 30.0% |
| TACTCTTCCTAAACCTATTT+AGG | - | chr5_2:75289445-75289464 | Msa0788530:intron | 30.0% | |
| ATAAGTTATTGGGCCTAAAT+AGG | + | chr5_2:75289461-75289480 | None:intergenic | 30.0% | |
| ! | ACACAACTTTTCTAATGCTT+TGG | + | chr5_2:75289886-75289905 | None:intergenic | 30.0% |
| CATGCTAACAAATGTCATAA+AGG | + | chr5_2:75289969-75289988 | None:intergenic | 30.0% | |
| !! | AAATAAATCCTGAGTTTTGG+TGG | - | chr5_2:75290037-75290056 | Msa0788530:intron | 30.0% |
| !! | ATCATTTTGACATGAAAACG+TGG | - | chr5_2:75290256-75290275 | Msa0788530:intron | 30.0% |
| !! | TCATTTTGACATGAAAACGT+GGG | - | chr5_2:75290257-75290276 | Msa0788530:intron | 30.0% |
| GAGAGAGAGAGAAAAAAAAA+AGG | + | chr5_2:75290376-75290395 | None:intergenic | 30.0% | |
| ! | CTTTATTTATTTCTCTCTCG+AGG | - | chr5_2:75290445-75290464 | Msa0788530:intron | 30.0% |
| AATGAGTGAAAATAGTGGTA+TGG | + | chr5_2:75290530-75290549 | None:intergenic | 30.0% | |
| ! | ATTTTACAAGTATCTACCCA+TGG | + | chr5_2:75290616-75290635 | None:intergenic | 30.0% |
| TGGGTAGATACTTGTAAAAT+TGG | - | chr5_2:75290616-75290635 | Msa0788530:intron | 30.0% | |
| !! | AAATTGGAAAGCACTCATAT+TGG | - | chr5_2:75290632-75290651 | Msa0788530:intron | 30.0% |
| AAAAAGTCAAAAACCGTGTT+TGG | + | chr5_2:75290746-75290765 | None:intergenic | 30.0% | |
| CATAATTGACATTGAGTTTC+TGG | - | chr5_2:75290963-75290982 | Msa0788530:intron | 30.0% | |
| ! | CATGTTTTCACACAATGTTA+AGG | - | chr5_2:75291460-75291479 | Msa0788530:intron | 30.0% |
| GAAAGATTGAATTGACATGT+CGG | + | chr5_2:75291513-75291532 | None:intergenic | 30.0% | |
| TGATATCTATGAGTTAAGAG+AGG | - | chr5_2:75291622-75291641 | Msa0788530:intron | 30.0% | |
| !!! | AGTCTCTCAAGTACATTTTT+TGG | + | chr5_2:75291680-75291699 | None:intergenic | 30.0% |
| GTGCAATATCTTGTGAAATT+TGG | - | chr5_2:75291746-75291765 | Msa0788530:intron | 30.0% | |
| TCAAAGAAATTCTTGATGCT+TGG | - | chr5_2:75291843-75291862 | Msa0788530:intron | 30.0% | |
| ATGATGCATCGAGGAAATTA+GGG | + | chr5_2:75288766-75288785 | None:intergenic | 35.0% | |
| ! | ACAAAAGAAGTATGGTCCTT+AGG | + | chr5_2:75288871-75288890 | None:intergenic | 35.0% |
| GTAGAGTGAATTTCACAAAC+TGG | + | chr5_2:75288896-75288915 | None:intergenic | 35.0% | |
| CTACTGTTAGTTACGATCAA+TGG | + | chr5_2:75288959-75288978 | None:intergenic | 35.0% | |
| ACCTTACACACAAACCATTA+TGG | - | chr5_2:75289005-75289024 | Msa0788530:CDS | 35.0% | |
| CCTTACACACAAACCATTAT+GGG | - | chr5_2:75289006-75289025 | Msa0788530:CDS | 35.0% | |
| CTTACACACAAACCATTATG+GGG | - | chr5_2:75289007-75289026 | Msa0788530:CDS | 35.0% | |
| ACATGGTTATGAGTTACGAT+TGG | + | chr5_2:75289076-75289095 | None:intergenic | 35.0% | |
| TAAGGGTTGTGTATTCATGT+GGG | + | chr5_2:75289162-75289181 | None:intergenic | 35.0% | |
| ATAAGGGTTGTGTATTCATG+TGG | + | chr5_2:75289163-75289182 | None:intergenic | 35.0% | |
| !! | CTTTAGGATGAGTTTGTAAG+GGG | + | chr5_2:75289201-75289220 | None:intergenic | 35.0% |
| !! | GCTTTAGGATGAGTTTGTAA+GGG | + | chr5_2:75289202-75289221 | None:intergenic | 35.0% |
| !! | TGCTTTAGGATGAGTTTGTA+AGG | + | chr5_2:75289203-75289222 | None:intergenic | 35.0% |
| GATTGCATCTAACATGCTTT+AGG | + | chr5_2:75289217-75289236 | None:intergenic | 35.0% | |
| !!! | CATTAAACCGCTTTTTGGAA+AGG | + | chr5_2:75289382-75289401 | None:intergenic | 35.0% |
| TATTGGGCCTAAATAGGTTT+AGG | + | chr5_2:75289455-75289474 | None:intergenic | 35.0% | |
| GTTAGTGTAAGTAGAATTGG+AGG | + | chr5_2:75289501-75289520 | None:intergenic | 35.0% | |
| ! | CAACTTTTCTAATGCTTTGG+TGG | + | chr5_2:75289883-75289902 | None:intergenic | 35.0% |
| AACGTAGTCAACATATGATG+AGG | + | chr5_2:75290209-75290228 | None:intergenic | 35.0% | |
| !! | TTGTTAAGTTGGTTATGTGG+TGG | + | chr5_2:75290408-75290427 | None:intergenic | 35.0% |
| !! | CAATAAGGATAGCTTTGTGT+GGG | - | chr5_2:75290912-75290931 | Msa0788530:intron | 35.0% |
| ! | TCCTTGATTTGAATAAAGGG+TGG | - | chr5_2:75291254-75291273 | Msa0788530:intron | 35.0% |
| ! | CCTTGATTTGAATAAAGGGT+GGG | - | chr5_2:75291255-75291274 | Msa0788530:intron | 35.0% |
| ! | CTTGATTTGAATAAAGGGTG+GGG | - | chr5_2:75291256-75291275 | Msa0788530:intron | 35.0% |
| ! | CGTTGATTGTTATGTCTGTA+TGG | + | chr5_2:75291373-75291392 | None:intergenic | 35.0% |
| TAGATTGGACCTATTACATG+CGG | - | chr5_2:75291589-75291608 | Msa0788530:intron | 35.0% | |
| TTGATTGACCAGCAGTAAGA+AGG | - | chr5_2:75288722-75288741 | Msa0788530:CDS | 40.0% | |
| CATGATGCATCGAGGAAATT+AGG | + | chr5_2:75288767-75288786 | None:intergenic | 40.0% | |
| GTTAGTTACGATCAATGGTG+TGG | + | chr5_2:75288954-75288973 | None:intergenic | 40.0% | |
| ! | CCCATAATGGTTTGTGTGTA+AGG | + | chr5_2:75289009-75289028 | None:intergenic | 40.0% |
| !! | ATGTAGTATTGGCCCCATAA+TGG | + | chr5_2:75289022-75289041 | None:intergenic | 40.0% |
| GGGGCCAATACTACATATAA+AGG | - | chr5_2:75289026-75289045 | Msa0788530:CDS | 40.0% | |
| GTATTCATGTGGGTAGTGAA+GGG | + | chr5_2:75289152-75289171 | None:intergenic | 40.0% | |
| TGTATTCATGTGGGTAGTGA+AGG | + | chr5_2:75289153-75289172 | None:intergenic | 40.0% | |
| CAAGAGAGAAGAGAAGAAAG+AGG | + | chr5_2:75289352-75289371 | None:intergenic | 40.0% | |
| TTCTCCTCCTTTCCAAAAAG+CGG | - | chr5_2:75289372-75289391 | Msa0788530:intron | 40.0% | |
| !!! | TAAACCGCTTTTTGGAAAGG+AGG | + | chr5_2:75289379-75289398 | None:intergenic | 40.0% |
| ! | TAATGCTTTGGTGGATCAAG+AGG | + | chr5_2:75289874-75289893 | None:intergenic | 40.0% |
| ACATGAAAACGTGGGTCTTA+TGG | - | chr5_2:75290265-75290284 | Msa0788530:intron | 40.0% | |
| TGTTTACCTTGTGTGAACCA+TGG | - | chr5_2:75290596-75290615 | Msa0788530:intron | 40.0% | |
| GTTTACCTTGTGTGAACCAT+GGG | - | chr5_2:75290597-75290616 | Msa0788530:intron | 40.0% | |
| !! | GGAAAGCACTCATATTGGTA+CGG | - | chr5_2:75290637-75290656 | Msa0788530:intron | 40.0% |
| GTTGTCGTTGTAACCAAACA+CGG | - | chr5_2:75290730-75290749 | Msa0788530:intron | 40.0% | |
| !! | GCAATAAGGATAGCTTTGTG+TGG | - | chr5_2:75290911-75290930 | Msa0788530:intron | 40.0% |
| ATTTCTGAGTCAGTACCACA+TGG | + | chr5_2:75291052-75291071 | None:intergenic | 40.0% | |
| CCCACCCTTTATTCAAATCA+AGG | + | chr5_2:75291258-75291277 | None:intergenic | 40.0% | |
| TTCTCCTATCATTCGACCTA+GGG | + | chr5_2:75291345-75291364 | None:intergenic | 40.0% | |
| TTTCTCCTATCATTCGACCT+AGG | + | chr5_2:75291346-75291365 | None:intergenic | 40.0% | |
| ACAATCAACGTCAATTCCGA+AGG | - | chr5_2:75291383-75291402 | Msa0788530:intron | 40.0% | |
| ATGAGCTCTTATGCTTCCTT+CGG | + | chr5_2:75291402-75291421 | None:intergenic | 40.0% | |
| GAAAACATGCTGTCAAACAC+AGG | + | chr5_2:75291449-75291468 | None:intergenic | 40.0% | |
| TGACATGTCGGTGATGTTTA+TGG | + | chr5_2:75291501-75291520 | None:intergenic | 40.0% | |
| ! | ATCTAGCTCCTTCTTACTGC+TGG | + | chr5_2:75288733-75288752 | None:intergenic | 45.0% |
| ATGCATCGAGGAAATTAGGG+TGG | + | chr5_2:75288763-75288782 | None:intergenic | 45.0% | |
| CTTGGAATCATGATGCATCG+AGG | + | chr5_2:75288775-75288794 | None:intergenic | 45.0% | |
| ! | TGGTTTGTGTGTAAGGTCGA+AGG | + | chr5_2:75289002-75289021 | None:intergenic | 45.0% |
| !! | AAAAGGAGGGCGTTACACTT+AGG | - | chr5_2:75289757-75289776 | Msa0788530:intron | 45.0% |
| !! | ATCCTGAGTTTTGGTGGCAA+AGG | - | chr5_2:75290043-75290062 | Msa0788530:intron | 45.0% |
| ! | TTCTCTCTCGAGGTGTCAAT+TGG | - | chr5_2:75290455-75290474 | Msa0788530:intron | 45.0% |
| ! | TCTCTCTCGAGGTGTCAATT+GGG | - | chr5_2:75290456-75290475 | Msa0788530:intron | 45.0% |
| ATCTACCCATGGTTCACACA+AGG | + | chr5_2:75290605-75290624 | None:intergenic | 45.0% | |
| !! | GATAGCTTTGTGTGGGAGAT+TGG | - | chr5_2:75290919-75290938 | Msa0788530:intron | 45.0% |
| GAGATTGGAGTTCCATTACC+TGG | - | chr5_2:75290934-75290953 | Msa0788530:intron | 45.0% | |
| CATTCGACCTAGGGATTCAA+GGG | + | chr5_2:75291336-75291355 | None:intergenic | 45.0% | |
| TCATTCGACCTAGGGATTCA+AGG | + | chr5_2:75291337-75291356 | None:intergenic | 45.0% | |
| GAATCCCTAGGTCGAATGAT+AGG | - | chr5_2:75291338-75291357 | Msa0788530:intron | 45.0% | |
| GTCAAACACAGGTGATTGTG+AGG | + | chr5_2:75291438-75291457 | None:intergenic | 45.0% | |
| ACTTGTCAGCCGCATGTAAT+AGG | + | chr5_2:75291601-75291620 | None:intergenic | 45.0% | |
| CATCGAGGAAATTAGGGTGG+AGG | + | chr5_2:75288760-75288779 | None:intergenic | 50.0% | |
| AAGCAGCGTTCTTCGTTCCT+AGG | - | chr5_2:75289308-75289327 | Msa0788530:intron | 50.0% | |
| AGCAGCGTTCTTCGTTCCTA+GGG | - | chr5_2:75289309-75289328 | Msa0788530:intron | 50.0% | |
| GAACTCAGAGAGAGAACCCT+AGG | + | chr5_2:75289328-75289347 | None:intergenic | 50.0% | |
| TGCCTTTGCCACCAAAACTC+AGG | + | chr5_2:75290048-75290067 | None:intergenic | 50.0% | |
| ! | TCGAGGTGTCAATTGGGTGA+TGG | - | chr5_2:75290462-75290481 | Msa0788530:intron | 50.0% |
| ! | CGAGGTGTCAATTGGGTGAT+GGG | - | chr5_2:75290463-75290482 | Msa0788530:intron | 50.0% |
| ! | GTGGGGAAGCTTGCTCTATT+TGG | - | chr5_2:75291273-75291292 | Msa0788530:intron | 50.0% |
| GCTTGCTCTATTTGGCCTGA+TGG | - | chr5_2:75291281-75291300 | Msa0788530:intron | 50.0% | |
| CTCGGCTGCATAAATCCATC+AGG | + | chr5_2:75291299-75291318 | None:intergenic | 50.0% | |
| GCAGCCGAGACAAAATGCCG+CGG | - | chr5_2:75291310-75291329 | Msa0788530:intron | 60.0% | |
| ! | AGGGCCGCGGCATTTTGTCT+CGG | + | chr5_2:75291317-75291336 | None:intergenic | 60.0% |
| ACCTAGGGATTCAAGGGCCG+CGG | + | chr5_2:75291330-75291349 | None:intergenic | 60.0% | |
| GCCGCGGCCCTTGAATCCCT+AGG | - | chr5_2:75291326-75291345 | Msa0788530:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 75288664 | 75291922 | 75288664 | ID=Msa0788530;Name=Msa0788530 |
| chr5_2 | mRNA | 75288664 | 75291922 | 75288664 | ID=Msa0788530-mRNA-1;Parent=Msa0788530;Name=Msa0788530-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0.5|0.33|0.66|1|1|3|48|236 |
| chr5_2 | exon | 75288664 | 75289314 | 75288664 | ID=Msa0788530-mRNA-1:exon:22993;Parent=Msa0788530-mRNA-1 |
| chr5_2 | exon | 75289578 | 75289674 | 75289578 | ID=Msa0788530-mRNA-1:exon:22992;Parent=Msa0788530-mRNA-1 |
| chr5_2 | exon | 75291912 | 75291922 | 75291912 | ID=Msa0788530-mRNA-1:exon:22991;Parent=Msa0788530-mRNA-1 |
| chr5_2 | CDS | 75291912 | 75291922 | 75291912 | ID=Msa0788530-mRNA-1:cds;Parent=Msa0788530-mRNA-1 |
| chr5_2 | CDS | 75289578 | 75289674 | 75289578 | ID=Msa0788530-mRNA-1:cds;Parent=Msa0788530-mRNA-1 |
| chr5_2 | CDS | 75288712 | 75289314 | 75288712 | ID=Msa0788530-mRNA-1:cds;Parent=Msa0788530-mRNA-1 |
| chr5_2 | three_prime_UTR | 75288664 | 75288711 | 75288664 | ID=Msa0788530-mRNA-1:three_prime_utr;Parent=Msa0788530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
