AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0789310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0789310 MtrunA17_Chr5g0404781 84.848 330 27 8 1 314 1 323 0.0 504
Msa0789310 MtrunA17_Chr8g0372461 52.023 346 119 12 1 314 1 331 4.14e-90 272
Msa0789310 MtrunA17_Chr3g0142171 42.500 320 141 12 1 309 1 288 3.65e-61 196
Msa0789310 MtrunA17_Chr1g0155791 51.739 230 86 6 99 314 120 338 3.82e-59 192
Msa0789310 MtrunA17_Chr4g0035591 46.853 143 56 1 101 243 20 142 1.29e-39 138
Msa0789310 MtrunA17_Chr5g0441921 48.366 153 67 2 101 241 124 276 2.28e-39 141
Msa0789310 MtrunA17_Chr3g0082511 44.375 160 73 3 101 246 134 291 7.62e-39 139
Msa0789310 MtrunA17_Chr8g0353111 36.957 230 105 8 43 249 78 290 1.43e-35 130
Msa0789310 MtrunA17_Chr2g0281741 62.162 37 14 0 99 135 148 184 1.85e-12 65.1
Msa0789310 MtrunA17_Chr0c01g0489181 59.459 37 15 0 99 135 65 101 6.34e-12 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0789310 AT5G66350.1 45.055 364 117 17 1 314 1 331 6.21e-73 228
Msa0789310 AT3G51060.1 46.626 326 111 11 35 314 62 370 3.15e-72 228
Msa0789310 AT5G66350.3 45.014 351 112 16 1 301 1 320 2.06e-70 221
Msa0789310 AT5G66350.2 45.014 351 112 16 1 301 1 320 4.10e-70 221
Msa0789310 AT1G75520.1 39.788 377 133 13 1 314 1 346 1.60e-64 207
Msa0789310 AT1G19790.2 38.753 369 145 14 1 313 1 344 1.61e-63 204
Msa0789310 AT1G19790.1 38.753 369 145 14 1 313 1 344 1.61e-63 204
Msa0789310 AT4G36260.1 39.053 338 161 14 1 312 1 319 3.15e-50 169
Msa0789310 AT2G18120.1 41.600 250 90 9 1 243 6 206 3.97e-46 155
Msa0789310 AT2G21400.2 52.778 144 51 3 101 241 10 139 1.84e-44 150
Msa0789310 AT2G21400.4 52.778 144 51 3 101 241 9 138 2.01e-44 150
Msa0789310 AT2G18120.2 40.964 249 91 9 1 243 6 204 5.94e-44 150
Msa0789310 AT2G21400.3 51.773 141 42 3 101 241 10 124 7.39e-43 145
Msa0789310 AT2G21400.1 51.773 141 42 3 101 241 9 123 8.52e-43 145
Msa0789310 AT5G12330.1 44.937 158 70 2 101 241 112 269 9.81e-37 134
Msa0789310 AT5G12330.2 44.937 158 70 2 101 241 112 269 9.81e-37 134
Msa0789310 AT5G12330.4 44.937 158 70 2 101 241 199 356 1.95e-36 135
Msa0789310 AT3G54430.1 41.290 155 66 6 97 244 37 173 3.48e-29 110
Msa0789310 AT5G33210.2 61.364 88 24 2 99 177 15 101 4.14e-29 108
Msa0789310 AT5G33210.1 61.364 88 24 2 99 177 50 136 9.82e-29 109
Msa0789310 AT5G12330.3 86.957 46 6 0 101 146 112 157 5.65e-23 95.5

Find 82 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAAATTCACTTTGAAATA+TGG 0.160002 5_2:-77169698 None:intergenic
GACAGAAGAGATAAGGTTTA+AGG 0.199519 5_2:-77171289 None:intergenic
ATCATTCGCCTAAACAAATT+AGG 0.250682 5_2:+77171429 Msa0789310:three_prime_UTR
CCCTGATGCTACTGCTGTTT+GGG 0.261168 5_2:+77171311 Msa0789310:CDS
TACTCCTCTGGTGTTGTGTT+AGG 0.305453 5_2:+77170039 Msa0789310:CDS
TGTTGTTGTTGAGATGATTT+AGG 0.309644 5_2:-77170288 None:intergenic
TCCCTGATGCTACTGCTGTT+TGG 0.338077 5_2:+77171310 Msa0789310:CDS
ATAATCCAACAACAGAATTC+TGG 0.358326 5_2:+77169887 Msa0789310:CDS
CACTTATATTAATAACTACT+AGG 0.365900 5_2:-77169618 None:intergenic
GAATTGAAGGTTTGGTTAGT+TGG 0.366672 5_2:-77169590 None:intergenic
ACTAGAATTAGAGGCGTTTC+CGG 0.373528 5_2:-77171238 None:intergenic
AATAGATCTACTGTGTTTGT+AGG 0.376062 5_2:+77170096 Msa0789310:CDS
TGGGAATAATAGTTACAATA+TGG 0.377378 5_2:+77171212 Msa0789310:CDS
AGAGTGAGTGAAGGGTTTGT+AGG 0.387801 5_2:-77170363 None:intergenic
CATATTTCAAAGTGAATTTG+TGG 0.392116 5_2:+77169699 Msa0789310:five_prime_UTR
TAACTATTATTCCCATGATC+TGG 0.405584 5_2:-77171204 None:intergenic
TGAATTCTCCAGCAGAGTTC+AGG 0.409422 5_2:+77171076 Msa0789310:CDS
CTACTAGGGTAAAGAATTGA+AGG 0.411713 5_2:-77169603 None:intergenic
TATGATTATGGTCCAGATCA+TGG 0.413474 5_2:+77171192 Msa0789310:CDS
CGAATGATGAATCAAGATCT+TGG 0.418725 5_2:-77171414 None:intergenic
CTTTCTCTTCTTCTAGCAGC+AGG 0.421698 5_2:-77170246 None:intergenic
AGGGTAAAGAATTGAAGGTT+TGG 0.424136 5_2:-77169598 None:intergenic
AAACTCATGTTAAGAGTACT+TGG 0.425175 5_2:+77170220 Msa0789310:CDS
ACAGAAGAGATAAGGTTTAA+GGG 0.430955 5_2:-77171288 None:intergenic
GGTTTGGAATAGTAGTAGTA+TGG 0.436546 5_2:+77169816 Msa0789310:exon
TCCCAAACAGCAGTAGCATC+AGG 0.439192 5_2:-77171312 None:intergenic
TTATACCAGAATTCTGTTGT+TGG 0.445028 5_2:-77169892 None:intergenic
TGTTAGGAGTGAGACCTACT+AGG 0.447826 5_2:+77170055 Msa0789310:CDS
GAGTGTACCACTAGAATTAG+AGG 0.455284 5_2:-77171247 None:intergenic
GCTGGAGAATTCACCACAGC+TGG 0.457156 5_2:-77171066 None:intergenic
GTTGATGTTGATGAAGATGT+TGG 0.457884 5_2:-77169969 None:intergenic
GATATAAGTTGTCAAGATTG+TGG 0.462555 5_2:+77170126 Msa0789310:CDS
CCACAAGATCTTTACTCCTC+TGG 0.463212 5_2:+77170027 Msa0789310:CDS
AAGAATTGCGTACCACTAGA+AGG 0.471301 5_2:-77171384 None:intergenic
TCTAGTGGTACACTCCTTGA+AGG 0.471939 5_2:+77171255 Msa0789310:CDS
TCTACTGTGTTTGTAGGAAG+TGG 0.474128 5_2:+77170102 Msa0789310:CDS
TTGTTGGATTATTATTCTGT+TGG 0.477389 5_2:-77169876 None:intergenic
CTCACGCACCTGAACTCTGC+TGG 0.492218 5_2:-77171084 None:intergenic
TCAGAAGAACAAACCCTAGT+AGG 0.499085 5_2:-77170069 None:intergenic
AGGGCTGAGCCACCCCTTCA+AGG 0.501243 5_2:-77171269 None:intergenic
GAATGATGAATCAAGATCTT+GGG 0.507602 5_2:-77171413 None:intergenic
CATCAGGGACAGAAGAGATA+AGG 0.508932 5_2:-77171296 None:intergenic
ATATAAGTTGTCAAGATTGT+GGG 0.512750 5_2:+77170127 Msa0789310:CDS
AAGGTTTGGTTAGTTGGTTG+AGG 0.513889 5_2:-77169584 None:intergenic
TCACTCACTCTCCCTTCAGC+AGG 0.521572 5_2:+77170375 Msa0789310:CDS
AGATCTTGTGGCTGCTGCTG+AGG 0.524505 5_2:-77170015 None:intergenic
TAAACGAGTGCAAGCTAAAG+AGG 0.530926 5_2:-77170340 None:intergenic
CTAGTGGTACACTCCTTGAA+GGG 0.532650 5_2:+77171256 Msa0789310:CDS
AATAGTTACAATATGGCTAC+CGG 0.553111 5_2:+77171219 Msa0789310:CDS
GGAGCTGGATACAAAGAAGA+AGG 0.554978 5_2:-77171345 None:intergenic
GTTAGGAGTGAGACCTACTA+GGG 0.557590 5_2:+77170056 Msa0789310:CDS
GAAGGCATGAAGGTATTAAG+TGG 0.559260 5_2:-77171366 None:intergenic
TCAACAGCTGTAAACATTGG+AGG 0.560848 5_2:+77171147 Msa0789310:CDS
CAAGTTCTACATCTCATATG+AGG 0.561087 5_2:-77170171 None:intergenic
ATGATTATGGTCCAGATCAT+GGG 0.563960 5_2:+77171193 Msa0789310:CDS
GTTGTTTCTAATTCATACCG+TGG 0.564425 5_2:+77169931 Msa0789310:CDS
ATGAAGGTATTAAGTGGAGC+TGG 0.565074 5_2:-77171360 None:intergenic
ATGAATCAAGATCTTGGGTG+GGG 0.569684 5_2:-77171408 None:intergenic
ACTTATATTAATAACTACTA+GGG 0.573540 5_2:-77169617 None:intergenic
TGGTACACTCCTTGAAGGGG+TGG 0.576962 5_2:+77171260 Msa0789310:CDS
TGATGAATCAAGATCTTGGG+TGG 0.578391 5_2:-77171410 None:intergenic
ATATAGTATATACCTGCTGA+AGG 0.578577 5_2:-77170387 None:intergenic
AGAACTTGTTGCAAGAGTAG+AGG 0.587131 5_2:+77170186 Msa0789310:CDS
TATTCAACAGCTGTAAACAT+TGG 0.588034 5_2:+77171144 Msa0789310:CDS
CCAGAGGAGTAAAGATCTTG+TGG 0.588657 5_2:-77170027 None:intergenic
CTGAAGGGAGAGTGAGTGAA+GGG 0.593490 5_2:-77170371 None:intergenic
CAACAGCTGTAAACATTGGA+GGG 0.602052 5_2:+77171148 Msa0789310:CDS
CTCAGTTGATGAAAACGAAG+AGG 0.603171 5_2:+77171113 Msa0789310:CDS
AATACCTTCATGCCTTCTAG+TGG 0.605967 5_2:+77171372 Msa0789310:CDS
GATGAATCAAGATCTTGGGT+GGG 0.609126 5_2:-77171409 None:intergenic
CCCAAACAGCAGTAGCATCA+GGG 0.610175 5_2:-77171311 None:intergenic
CGTACCACTAGAAGGCATGA+AGG 0.621664 5_2:-77171376 None:intergenic
AACTCATGTTAAGAGTACTT+GGG 0.622414 5_2:+77170221 Msa0789310:CDS
TGAATCAAGATCTTGGGTGG+GGG 0.629021 5_2:-77171407 None:intergenic
AAATCATCTCAACAACAACA+TGG 0.641154 5_2:+77170291 Msa0789310:CDS
TAGTGGTACACTCCTTGAAG+GGG 0.649565 5_2:+77171257 Msa0789310:CDS
GCTGAAGGGAGAGTGAGTGA+AGG 0.652710 5_2:-77170372 None:intergenic
TATAGTATATACCTGCTGAA+GGG 0.659960 5_2:-77170386 None:intergenic
CACTCCTAACACAACACCAG+AGG 0.665208 5_2:-77170043 None:intergenic
GTATACATATATATAGATCG+AGG 0.691769 5_2:+77169764 Msa0789310:five_prime_UTR
GGAAACGCCTCTAATTCTAG+TGG 0.698556 5_2:+77171240 Msa0789310:CDS
GGTTCCAAATCTCAAAACCA+CGG 0.709690 5_2:-77169948 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTTATATTAATAACTACTA+GGG - chr5_2:77169620-77169639 None:intergenic 15.0%
!! TTATTGTTTATAATAGTGAT+CGG + chr5_2:77170872-77170891 Msa0789310:intron 15.0%
!! ACTTATATTAATAACTACTA+GGG - chr5_2:77169620-77169639 None:intergenic 15.0%
!! TTATTGTTTATAATAGTGAT+CGG + chr5_2:77170872-77170891 Msa0789310:intron 15.0%
!! CACTTATATTAATAACTACT+AGG - chr5_2:77169621-77169640 None:intergenic 20.0%
!!! AATTTGTGGTTAATTTTGAT+TGG + chr5_2:77169713-77169732 Msa0789310:five_prime_UTR 20.0%
!! AAACAAACAAACTATTAGTT+AGG - chr5_2:77170984-77171003 None:intergenic 20.0%
!!! TGTTTTTTCCTAATTTGTTT+AGG - chr5_2:77171440-77171459 None:intergenic 20.0%
!! CACTTATATTAATAACTACT+AGG - chr5_2:77169621-77169640 None:intergenic 20.0%
!!! AATTTGTGGTTAATTTTGAT+TGG + chr5_2:77169713-77169732 Msa0789310:five_prime_UTR 20.0%
!! AAACAAACAAACTATTAGTT+AGG - chr5_2:77170984-77171003 None:intergenic 20.0%
!!! TGTTTTTTCCTAATTTGTTT+AGG - chr5_2:77171440-77171459 None:intergenic 20.0%
!!! CACAAATTCACTTTGAAATA+TGG - chr5_2:77169701-77169720 None:intergenic 25.0%
! CATATTTCAAAGTGAATTTG+TGG + chr5_2:77169699-77169718 Msa0789310:five_prime_UTR 25.0%
! GTATACATATATATAGATCG+AGG + chr5_2:77169764-77169783 Msa0789310:five_prime_UTR 25.0%
!!! ATGGCTAGTTTATTTTCATT+AGG + chr5_2:77169835-77169854 Msa0789310:CDS 25.0%
! TTGTTGGATTATTATTCTGT+TGG - chr5_2:77169879-77169898 None:intergenic 25.0%
! ATATAAGTTGTCAAGATTGT+GGG + chr5_2:77170127-77170146 Msa0789310:CDS 25.0%
! GACATATATGAACAAAGAAA+AGG - chr5_2:77170768-77170787 None:intergenic 25.0%
! GTTCTAACATTTACTTACTA+TGG + chr5_2:77170815-77170834 Msa0789310:intron 25.0%
!! TATAACACAGCTTTATAGAA+AGG - chr5_2:77170923-77170942 None:intergenic 25.0%
! AAAAAATTAAGGGCTATTAG+AGG + chr5_2:77171032-77171051 Msa0789310:intron 25.0%
!! AGAGGAATTTTGTATGATTA+TGG + chr5_2:77171180-77171199 Msa0789310:CDS 25.0%
! TGGGAATAATAGTTACAATA+TGG + chr5_2:77171212-77171231 Msa0789310:CDS 25.0%
!!! CACAAATTCACTTTGAAATA+TGG - chr5_2:77169701-77169720 None:intergenic 25.0%
! CATATTTCAAAGTGAATTTG+TGG + chr5_2:77169699-77169718 Msa0789310:five_prime_UTR 25.0%
! GTATACATATATATAGATCG+AGG + chr5_2:77169764-77169783 Msa0789310:five_prime_UTR 25.0%
!!! ATGGCTAGTTTATTTTCATT+AGG + chr5_2:77169835-77169854 Msa0789310:CDS 25.0%
! TTGTTGGATTATTATTCTGT+TGG - chr5_2:77169879-77169898 None:intergenic 25.0%
! ATATAAGTTGTCAAGATTGT+GGG + chr5_2:77170127-77170146 Msa0789310:CDS 25.0%
! GACATATATGAACAAAGAAA+AGG - chr5_2:77170768-77170787 None:intergenic 25.0%
! GTTCTAACATTTACTTACTA+TGG + chr5_2:77170815-77170834 Msa0789310:intron 25.0%
!! TATAACACAGCTTTATAGAA+AGG - chr5_2:77170923-77170942 None:intergenic 25.0%
! AAAAAATTAAGGGCTATTAG+AGG + chr5_2:77171032-77171051 Msa0789310:intron 25.0%
!! AGAGGAATTTTGTATGATTA+TGG + chr5_2:77171180-77171199 Msa0789310:CDS 25.0%
! TGGGAATAATAGTTACAATA+TGG + chr5_2:77171212-77171231 Msa0789310:CDS 25.0%
!!! TCGAGGTTTTTTTCTTGATA+TGG + chr5_2:77169781-77169800 Msa0789310:five_prime_UTR 30.0%
! TTGATATGGATTTTCGTTCA+GGG + chr5_2:77169795-77169814 Msa0789310:five_prime_UTR 30.0%
ATAATCCAACAACAGAATTC+TGG + chr5_2:77169887-77169906 Msa0789310:CDS 30.0%
TTATACCAGAATTCTGTTGT+TGG - chr5_2:77169895-77169914 None:intergenic 30.0%
AATAGATCTACTGTGTTTGT+AGG + chr5_2:77170096-77170115 Msa0789310:CDS 30.0%
GATATAAGTTGTCAAGATTG+TGG + chr5_2:77170126-77170145 Msa0789310:CDS 30.0%
!! AAACTCATGTTAAGAGTACT+TGG + chr5_2:77170220-77170239 Msa0789310:CDS 30.0%
!! AACTCATGTTAAGAGTACTT+GGG + chr5_2:77170221-77170240 Msa0789310:CDS 30.0%
! TGTTGTTGTTGAGATGATTT+AGG - chr5_2:77170291-77170310 None:intergenic 30.0%
AAATCATCTCAACAACAACA+TGG + chr5_2:77170291-77170310 Msa0789310:CDS 30.0%
TATAGTATATACCTGCTGAA+GGG - chr5_2:77170389-77170408 None:intergenic 30.0%
ATATAGTATATACCTGCTGA+AGG - chr5_2:77170390-77170409 None:intergenic 30.0%
! CTTCTGAAAAAGATAAGTGA+AGG + chr5_2:77170522-77170541 Msa0789310:intron 30.0%
ATTCTCTTCCAAAACTTTCT+CGG - chr5_2:77170550-77170569 None:intergenic 30.0%
!!! ACACTGTTTTGGAAAAGAAA+AGG - chr5_2:77170608-77170627 None:intergenic 30.0%
TTACTTACTATGGATACATG+AGG + chr5_2:77170825-77170844 Msa0789310:intron 30.0%
TATTCAACAGCTGTAAACAT+TGG + chr5_2:77171144-77171163 Msa0789310:CDS 30.0%
TAACTATTATTCCCATGATC+TGG - chr5_2:77171207-77171226 None:intergenic 30.0%
AATAGTTACAATATGGCTAC+CGG + chr5_2:77171219-77171238 Msa0789310:CDS 30.0%
ACAGAAGAGATAAGGTTTAA+GGG - chr5_2:77171291-77171310 None:intergenic 30.0%
GAATGATGAATCAAGATCTT+GGG - chr5_2:77171416-77171435 None:intergenic 30.0%
ATCATTCGCCTAAACAAATT+AGG + chr5_2:77171429-77171448 Msa0789310:three_prime_UTR 30.0%
!!! TCGAGGTTTTTTTCTTGATA+TGG + chr5_2:77169781-77169800 Msa0789310:five_prime_UTR 30.0%
! TTGATATGGATTTTCGTTCA+GGG + chr5_2:77169795-77169814 Msa0789310:five_prime_UTR 30.0%
ATAATCCAACAACAGAATTC+TGG + chr5_2:77169887-77169906 Msa0789310:CDS 30.0%
TTATACCAGAATTCTGTTGT+TGG - chr5_2:77169895-77169914 None:intergenic 30.0%
AATAGATCTACTGTGTTTGT+AGG + chr5_2:77170096-77170115 Msa0789310:CDS 30.0%
GATATAAGTTGTCAAGATTG+TGG + chr5_2:77170126-77170145 Msa0789310:CDS 30.0%
!! AAACTCATGTTAAGAGTACT+TGG + chr5_2:77170220-77170239 Msa0789310:CDS 30.0%
!! AACTCATGTTAAGAGTACTT+GGG + chr5_2:77170221-77170240 Msa0789310:CDS 30.0%
! TGTTGTTGTTGAGATGATTT+AGG - chr5_2:77170291-77170310 None:intergenic 30.0%
AAATCATCTCAACAACAACA+TGG + chr5_2:77170291-77170310 Msa0789310:CDS 30.0%
TATAGTATATACCTGCTGAA+GGG - chr5_2:77170389-77170408 None:intergenic 30.0%
ATATAGTATATACCTGCTGA+AGG - chr5_2:77170390-77170409 None:intergenic 30.0%
! CTTCTGAAAAAGATAAGTGA+AGG + chr5_2:77170522-77170541 Msa0789310:intron 30.0%
ATTCTCTTCCAAAACTTTCT+CGG - chr5_2:77170550-77170569 None:intergenic 30.0%
!!! ACACTGTTTTGGAAAAGAAA+AGG - chr5_2:77170608-77170627 None:intergenic 30.0%
TTACTTACTATGGATACATG+AGG + chr5_2:77170825-77170844 Msa0789310:intron 30.0%
TATTCAACAGCTGTAAACAT+TGG + chr5_2:77171144-77171163 Msa0789310:CDS 30.0%
TAACTATTATTCCCATGATC+TGG - chr5_2:77171207-77171226 None:intergenic 30.0%
AATAGTTACAATATGGCTAC+CGG + chr5_2:77171219-77171238 Msa0789310:CDS 30.0%
ACAGAAGAGATAAGGTTTAA+GGG - chr5_2:77171291-77171310 None:intergenic 30.0%
GAATGATGAATCAAGATCTT+GGG - chr5_2:77171416-77171435 None:intergenic 30.0%
ATCATTCGCCTAAACAAATT+AGG + chr5_2:77171429-77171448 Msa0789310:three_prime_UTR 30.0%
! GAATTGAAGGTTTGGTTAGT+TGG - chr5_2:77169593-77169612 None:intergenic 35.0%
AGGGTAAAGAATTGAAGGTT+TGG - chr5_2:77169601-77169620 None:intergenic 35.0%
CTACTAGGGTAAAGAATTGA+AGG - chr5_2:77169606-77169625 None:intergenic 35.0%
! CTTGATATGGATTTTCGTTC+AGG + chr5_2:77169794-77169813 Msa0789310:five_prime_UTR 35.0%
! GGTTTGGAATAGTAGTAGTA+TGG + chr5_2:77169816-77169835 Msa0789310:exon 35.0%
!! GTTGTTTCTAATTCATACCG+TGG + chr5_2:77169931-77169950 Msa0789310:CDS 35.0%
! GTTGATGTTGATGAAGATGT+TGG - chr5_2:77169972-77169991 None:intergenic 35.0%
CAAGTTCTACATCTCATATG+AGG - chr5_2:77170174-77170193 None:intergenic 35.0%
TGTTGTTCTGACGAATGAAT+GGG + chr5_2:77170625-77170644 Msa0789310:intron 35.0%
AATGAATGGGATCAATGACA+GGG + chr5_2:77170638-77170657 Msa0789310:intron 35.0%
!! AAAGTAGTGTTGTTGGTTTG+TGG - chr5_2:77170731-77170750 None:intergenic 35.0%
TGTGAAGAAAGTAGTGTTGT+TGG - chr5_2:77170738-77170757 None:intergenic 35.0%
TATGATTATGGTCCAGATCA+TGG + chr5_2:77171192-77171211 Msa0789310:CDS 35.0%
ATGATTATGGTCCAGATCAT+GGG + chr5_2:77171193-77171212 Msa0789310:CDS 35.0%
GACAGAAGAGATAAGGTTTA+AGG - chr5_2:77171292-77171311 None:intergenic 35.0%
CGAATGATGAATCAAGATCT+TGG - chr5_2:77171417-77171436 None:intergenic 35.0%
! GAATTGAAGGTTTGGTTAGT+TGG - chr5_2:77169593-77169612 None:intergenic 35.0%
AGGGTAAAGAATTGAAGGTT+TGG - chr5_2:77169601-77169620 None:intergenic 35.0%
CTACTAGGGTAAAGAATTGA+AGG - chr5_2:77169606-77169625 None:intergenic 35.0%
! CTTGATATGGATTTTCGTTC+AGG + chr5_2:77169794-77169813 Msa0789310:five_prime_UTR 35.0%
! GGTTTGGAATAGTAGTAGTA+TGG + chr5_2:77169816-77169835 Msa0789310:exon 35.0%
!! GTTGTTTCTAATTCATACCG+TGG + chr5_2:77169931-77169950 Msa0789310:CDS 35.0%
! GTTGATGTTGATGAAGATGT+TGG - chr5_2:77169972-77169991 None:intergenic 35.0%
CAAGTTCTACATCTCATATG+AGG - chr5_2:77170174-77170193 None:intergenic 35.0%
TGTTGTTCTGACGAATGAAT+GGG + chr5_2:77170625-77170644 Msa0789310:intron 35.0%
AATGAATGGGATCAATGACA+GGG + chr5_2:77170638-77170657 Msa0789310:intron 35.0%
!! AAAGTAGTGTTGTTGGTTTG+TGG - chr5_2:77170731-77170750 None:intergenic 35.0%
TGTGAAGAAAGTAGTGTTGT+TGG - chr5_2:77170738-77170757 None:intergenic 35.0%
TATGATTATGGTCCAGATCA+TGG + chr5_2:77171192-77171211 Msa0789310:CDS 35.0%
ATGATTATGGTCCAGATCAT+GGG + chr5_2:77171193-77171212 Msa0789310:CDS 35.0%
GACAGAAGAGATAAGGTTTA+AGG - chr5_2:77171292-77171311 None:intergenic 35.0%
CGAATGATGAATCAAGATCT+TGG - chr5_2:77171417-77171436 None:intergenic 35.0%
! AAGGTTTGGTTAGTTGGTTG+AGG - chr5_2:77169587-77169606 None:intergenic 40.0%
! ATGGATTTTCGTTCAGGGTT+TGG + chr5_2:77169800-77169819 Msa0789310:five_prime_UTR 40.0%
!!! CATACCGTGGTTTTGAGATT+TGG + chr5_2:77169944-77169963 Msa0789310:CDS 40.0%
GGTTCCAAATCTCAAAACCA+CGG - chr5_2:77169951-77169970 None:intergenic 40.0%
TCAGAAGAACAAACCCTAGT+AGG - chr5_2:77170072-77170091 None:intergenic 40.0%
TCTACTGTGTTTGTAGGAAG+TGG + chr5_2:77170102-77170121 Msa0789310:CDS 40.0%
!! AGAACTTGTTGCAAGAGTAG+AGG + chr5_2:77170186-77170205 Msa0789310:CDS 40.0%
TAAACGAGTGCAAGCTAAAG+AGG - chr5_2:77170343-77170362 None:intergenic 40.0%
!!! TGAAGGTACCGAGAAAGTTT+TGG + chr5_2:77170539-77170558 Msa0789310:intron 40.0%
! TCGTCAGAACAACACTGTTT+TGG - chr5_2:77170619-77170638 None:intergenic 40.0%
! GTGTTGTTCTGACGAATGAA+TGG + chr5_2:77170624-77170643 Msa0789310:intron 40.0%
GAATGAATGGGATCAATGAC+AGG + chr5_2:77170637-77170656 Msa0789310:intron 40.0%
!! CTCAGTTGATGAAAACGAAG+AGG + chr5_2:77171113-77171132 Msa0789310:CDS 40.0%
TCAACAGCTGTAAACATTGG+AGG + chr5_2:77171147-77171166 Msa0789310:CDS 40.0%
CAACAGCTGTAAACATTGGA+GGG + chr5_2:77171148-77171167 Msa0789310:CDS 40.0%
!!! ATTGGAGGGCATGTTTTTAG+AGG + chr5_2:77171162-77171181 Msa0789310:CDS 40.0%
!! ACTAGAATTAGAGGCGTTTC+CGG - chr5_2:77171241-77171260 None:intergenic 40.0%
GAGTGTACCACTAGAATTAG+AGG - chr5_2:77171250-77171269 None:intergenic 40.0%
!! ATGAAGGTATTAAGTGGAGC+TGG - chr5_2:77171363-77171382 None:intergenic 40.0%
!! GAAGGCATGAAGGTATTAAG+TGG - chr5_2:77171369-77171388 None:intergenic 40.0%
AATACCTTCATGCCTTCTAG+TGG + chr5_2:77171372-77171391 Msa0789310:CDS 40.0%
AAGAATTGCGTACCACTAGA+AGG - chr5_2:77171387-77171406 None:intergenic 40.0%
ATGAATCAAGATCTTGGGTG+GGG - chr5_2:77171411-77171430 None:intergenic 40.0%
GATGAATCAAGATCTTGGGT+GGG - chr5_2:77171412-77171431 None:intergenic 40.0%
TGATGAATCAAGATCTTGGG+TGG - chr5_2:77171413-77171432 None:intergenic 40.0%
! AAGGTTTGGTTAGTTGGTTG+AGG - chr5_2:77169587-77169606 None:intergenic 40.0%
! ATGGATTTTCGTTCAGGGTT+TGG + chr5_2:77169800-77169819 Msa0789310:five_prime_UTR 40.0%
!!! CATACCGTGGTTTTGAGATT+TGG + chr5_2:77169944-77169963 Msa0789310:CDS 40.0%
GGTTCCAAATCTCAAAACCA+CGG - chr5_2:77169951-77169970 None:intergenic 40.0%
TCAGAAGAACAAACCCTAGT+AGG - chr5_2:77170072-77170091 None:intergenic 40.0%
TCTACTGTGTTTGTAGGAAG+TGG + chr5_2:77170102-77170121 Msa0789310:CDS 40.0%
!! AGAACTTGTTGCAAGAGTAG+AGG + chr5_2:77170186-77170205 Msa0789310:CDS 40.0%
TAAACGAGTGCAAGCTAAAG+AGG - chr5_2:77170343-77170362 None:intergenic 40.0%
!!! TGAAGGTACCGAGAAAGTTT+TGG + chr5_2:77170539-77170558 Msa0789310:intron 40.0%
! TCGTCAGAACAACACTGTTT+TGG - chr5_2:77170619-77170638 None:intergenic 40.0%
! GTGTTGTTCTGACGAATGAA+TGG + chr5_2:77170624-77170643 Msa0789310:intron 40.0%
GAATGAATGGGATCAATGAC+AGG + chr5_2:77170637-77170656 Msa0789310:intron 40.0%
!! CTCAGTTGATGAAAACGAAG+AGG + chr5_2:77171113-77171132 Msa0789310:CDS 40.0%
TCAACAGCTGTAAACATTGG+AGG + chr5_2:77171147-77171166 Msa0789310:CDS 40.0%
CAACAGCTGTAAACATTGGA+GGG + chr5_2:77171148-77171167 Msa0789310:CDS 40.0%
!!! ATTGGAGGGCATGTTTTTAG+AGG + chr5_2:77171162-77171181 Msa0789310:CDS 40.0%
!! ACTAGAATTAGAGGCGTTTC+CGG - chr5_2:77171241-77171260 None:intergenic 40.0%
GAGTGTACCACTAGAATTAG+AGG - chr5_2:77171250-77171269 None:intergenic 40.0%
!! ATGAAGGTATTAAGTGGAGC+TGG - chr5_2:77171363-77171382 None:intergenic 40.0%
!! GAAGGCATGAAGGTATTAAG+TGG - chr5_2:77171369-77171388 None:intergenic 40.0%
AATACCTTCATGCCTTCTAG+TGG + chr5_2:77171372-77171391 Msa0789310:CDS 40.0%
AAGAATTGCGTACCACTAGA+AGG - chr5_2:77171387-77171406 None:intergenic 40.0%
ATGAATCAAGATCTTGGGTG+GGG - chr5_2:77171411-77171430 None:intergenic 40.0%
GATGAATCAAGATCTTGGGT+GGG - chr5_2:77171412-77171431 None:intergenic 40.0%
TGATGAATCAAGATCTTGGG+TGG - chr5_2:77171413-77171432 None:intergenic 40.0%
CCAGAGGAGTAAAGATCTTG+TGG - chr5_2:77170030-77170049 None:intergenic 45.0%
CCACAAGATCTTTACTCCTC+TGG + chr5_2:77170027-77170046 Msa0789310:CDS 45.0%
!! TACTCCTCTGGTGTTGTGTT+AGG + chr5_2:77170039-77170058 Msa0789310:CDS 45.0%
TGTTAGGAGTGAGACCTACT+AGG + chr5_2:77170055-77170074 Msa0789310:CDS 45.0%
GTTAGGAGTGAGACCTACTA+GGG + chr5_2:77170056-77170075 Msa0789310:CDS 45.0%
CTTTCTCTTCTTCTAGCAGC+AGG - chr5_2:77170249-77170268 None:intergenic 45.0%
AGAGTGAGTGAAGGGTTTGT+AGG - chr5_2:77170366-77170385 None:intergenic 45.0%
! TGTGGAAGAGTGAGTGTTGT+TGG - chr5_2:77170713-77170732 None:intergenic 45.0%
! GGAGATGAATTTTCCAGCTG+TGG + chr5_2:77171053-77171072 Msa0789310:CDS 45.0%
TGAATTCTCCAGCAGAGTTC+AGG + chr5_2:77171076-77171095 Msa0789310:CDS 45.0%
GGAAACGCCTCTAATTCTAG+TGG + chr5_2:77171240-77171259 Msa0789310:CDS 45.0%
TCTAGTGGTACACTCCTTGA+AGG + chr5_2:77171255-77171274 Msa0789310:CDS 45.0%
CTAGTGGTACACTCCTTGAA+GGG + chr5_2:77171256-77171275 Msa0789310:CDS 45.0%
TAGTGGTACACTCCTTGAAG+GGG + chr5_2:77171257-77171276 Msa0789310:CDS 45.0%
CATCAGGGACAGAAGAGATA+AGG - chr5_2:77171299-77171318 None:intergenic 45.0%
GGAGCTGGATACAAAGAAGA+AGG - chr5_2:77171348-77171367 None:intergenic 45.0%
TGAATCAAGATCTTGGGTGG+GGG - chr5_2:77171410-77171429 None:intergenic 45.0%
CACAGAACAGAACTGCAAAC+GGG - chr5_2:77169489-77169508 None:intergenic 45.0%
GCACAGAACAGAACTGCAAA+CGG - chr5_2:77169490-77169509 None:intergenic 45.0%
CCAGAGGAGTAAAGATCTTG+TGG - chr5_2:77170030-77170049 None:intergenic 45.0%
CCACAAGATCTTTACTCCTC+TGG + chr5_2:77170027-77170046 Msa0789310:CDS 45.0%
!! TACTCCTCTGGTGTTGTGTT+AGG + chr5_2:77170039-77170058 Msa0789310:CDS 45.0%
TGTTAGGAGTGAGACCTACT+AGG + chr5_2:77170055-77170074 Msa0789310:CDS 45.0%
GTTAGGAGTGAGACCTACTA+GGG + chr5_2:77170056-77170075 Msa0789310:CDS 45.0%
CTTTCTCTTCTTCTAGCAGC+AGG - chr5_2:77170249-77170268 None:intergenic 45.0%
AGAGTGAGTGAAGGGTTTGT+AGG - chr5_2:77170366-77170385 None:intergenic 45.0%
! TGTGGAAGAGTGAGTGTTGT+TGG - chr5_2:77170713-77170732 None:intergenic 45.0%
! GGAGATGAATTTTCCAGCTG+TGG + chr5_2:77171053-77171072 Msa0789310:CDS 45.0%
TGAATTCTCCAGCAGAGTTC+AGG + chr5_2:77171076-77171095 Msa0789310:CDS 45.0%
GGAAACGCCTCTAATTCTAG+TGG + chr5_2:77171240-77171259 Msa0789310:CDS 45.0%
TCTAGTGGTACACTCCTTGA+AGG + chr5_2:77171255-77171274 Msa0789310:CDS 45.0%
CTAGTGGTACACTCCTTGAA+GGG + chr5_2:77171256-77171275 Msa0789310:CDS 45.0%
TAGTGGTACACTCCTTGAAG+GGG + chr5_2:77171257-77171276 Msa0789310:CDS 45.0%
CATCAGGGACAGAAGAGATA+AGG - chr5_2:77171299-77171318 None:intergenic 45.0%
GGAGCTGGATACAAAGAAGA+AGG - chr5_2:77171348-77171367 None:intergenic 45.0%
TGAATCAAGATCTTGGGTGG+GGG - chr5_2:77171410-77171429 None:intergenic 45.0%
!! AATTATCATTTAAAAAATTA+AGG + chr5_2:77171021-77171040 Msa0789310:intron 5.0%
!! ATTATCATTTAAAAAATTAA+GGG + chr5_2:77171022-77171041 Msa0789310:intron 5.0%
!! AATTATCATTTAAAAAATTA+AGG + chr5_2:77171021-77171040 Msa0789310:intron 5.0%
!! ATTATCATTTAAAAAATTAA+GGG + chr5_2:77171022-77171041 Msa0789310:intron 5.0%
CACTCCTAACACAACACCAG+AGG - chr5_2:77170046-77170065 None:intergenic 50.0%
CTGAAGGGAGAGTGAGTGAA+GGG - chr5_2:77170374-77170393 None:intergenic 50.0%
TCCCTGATGCTACTGCTGTT+TGG + chr5_2:77171310-77171329 Msa0789310:CDS 50.0%
CCCAAACAGCAGTAGCATCA+GGG - chr5_2:77171314-77171333 None:intergenic 50.0%
! CCCTGATGCTACTGCTGTTT+GGG + chr5_2:77171311-77171330 Msa0789310:CDS 50.0%
TCCCAAACAGCAGTAGCATC+AGG - chr5_2:77171315-77171334 None:intergenic 50.0%
! CGTACCACTAGAAGGCATGA+AGG - chr5_2:77171379-77171398 None:intergenic 50.0%
CACTCCTAACACAACACCAG+AGG - chr5_2:77170046-77170065 None:intergenic 50.0%
CTGAAGGGAGAGTGAGTGAA+GGG - chr5_2:77170374-77170393 None:intergenic 50.0%
TCCCTGATGCTACTGCTGTT+TGG + chr5_2:77171310-77171329 Msa0789310:CDS 50.0%
CCCAAACAGCAGTAGCATCA+GGG - chr5_2:77171314-77171333 None:intergenic 50.0%
! CCCTGATGCTACTGCTGTTT+GGG + chr5_2:77171311-77171330 Msa0789310:CDS 50.0%
TCCCAAACAGCAGTAGCATC+AGG - chr5_2:77171315-77171334 None:intergenic 50.0%
! CGTACCACTAGAAGGCATGA+AGG - chr5_2:77171379-77171398 None:intergenic 50.0%
AGATCTTGTGGCTGCTGCTG+AGG - chr5_2:77170018-77170037 None:intergenic 55.0%
GCTGAAGGGAGAGTGAGTGA+AGG - chr5_2:77170375-77170394 None:intergenic 55.0%
TCACTCACTCTCCCTTCAGC+AGG + chr5_2:77170375-77170394 Msa0789310:CDS 55.0%
GCTGGAGAATTCACCACAGC+TGG - chr5_2:77171069-77171088 None:intergenic 55.0%
TGGTACACTCCTTGAAGGGG+TGG + chr5_2:77171260-77171279 Msa0789310:CDS 55.0%
AGATCTTGTGGCTGCTGCTG+AGG - chr5_2:77170018-77170037 None:intergenic 55.0%
GCTGAAGGGAGAGTGAGTGA+AGG - chr5_2:77170375-77170394 None:intergenic 55.0%
TCACTCACTCTCCCTTCAGC+AGG + chr5_2:77170375-77170394 Msa0789310:CDS 55.0%
GCTGGAGAATTCACCACAGC+TGG - chr5_2:77171069-77171088 None:intergenic 55.0%
TGGTACACTCCTTGAAGGGG+TGG + chr5_2:77171260-77171279 Msa0789310:CDS 55.0%
CTCACGCACCTGAACTCTGC+TGG - chr5_2:77171087-77171106 None:intergenic 60.0%
CTCACGCACCTGAACTCTGC+TGG - chr5_2:77171087-77171106 None:intergenic 60.0%
AGGGCTGAGCCACCCCTTCA+AGG - chr5_2:77171272-77171291 None:intergenic 65.0%
AGGGCTGAGCCACCCCTTCA+AGG - chr5_2:77171272-77171291 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 77169489 77171507 77169489 ID=Msa0789310;Name=Msa0789310
chr5_2 mRNA 77169489 77171507 77169489 ID=Msa0789310-mRNA-1;Parent=Msa0789310;Name=Msa0789310-mRNA-1;_AED=0.00;_eAED=0.00;_QI=346|1|1|1|1|1|2|82|314
chr5_2 exon 77169489 77170396 77169489 ID=Msa0789310-mRNA-1:exon:23479;Parent=Msa0789310-mRNA-1
chr5_2 exon 77171043 77171507 77171043 ID=Msa0789310-mRNA-1:exon:23480;Parent=Msa0789310-mRNA-1
chr5_2 five_prime_UTR 77169489 77169834 77169489 ID=Msa0789310-mRNA-1:five_prime_utr;Parent=Msa0789310-mRNA-1
chr5_2 CDS 77169835 77170396 77169835 ID=Msa0789310-mRNA-1:cds;Parent=Msa0789310-mRNA-1
chr5_2 CDS 77171043 77171425 77171043 ID=Msa0789310-mRNA-1:cds;Parent=Msa0789310-mRNA-1
chr5_2 three_prime_UTR 77171426 77171507 77171426 ID=Msa0789310-mRNA-1:three_prime_utr;Parent=Msa0789310-mRNA-1
Gene Sequence

>Msa0789310

ATGGCTAGTTTATTTTCATTAGGAAGAACTGAAGAAGAAAACCAACAGAATAATAATCCAACAACAGAATTCTGGTATAATACGAATGATGATTCTGTTGTTTCTAATTCATACCGTGGTTTTGAGATTTGGAACCAACATCTTCATCAACATCAACAACACTTGCTTTCTTTACAACAACCTCAGCAGCAGCCACAAGATCTTTACTCCTCTGGTGTTGTGTTAGGAGTGAGACCTACTAGGGTTTGTTCTTCTGATGAGAATAGATCTACTGTGTTTGTAGGAAGTGGAGATATAAGTTGTCAAGATTGTGGGAATCAAGCTAAGAAAGATTGTCCTCATATGAGATGTAGAACTTGTTGCAAGAGTAGAGGTTTTGATTGTCAAACTCATGTTAAGAGTACTTGGGTTCCTGCTGCTAGAAGAAGAGAAAGACAACAACAACTTTCTGCTCCTAAATCATCTCAACAACAACATGGAGAGAGAGATCTTAACAATAACAATTCCTCTTTAGCTTGCACTCGTTTACCTACAAACCCTTCACTCACTCTCCCTTCAGCAGGGCTATTAGAGGAGATGAATTTTCCAGCTGTGGTGAATTCTCCAGCAGAGTTCAGGTGCGTGAGAGTTAGCTCAGTTGATGAAAACGAAGAGGAGTATGCATATTCAACAGCTGTAAACATTGGAGGGCATGTTTTTAGAGGAATTTTGTATGATTATGGTCCAGATCATGGGAATAATAGTTACAATATGGCTACCGGAAACGCCTCTAATTCTAGTGGTACACTCCTTGAAGGGGTGGCTCAGCCCTTAAACCTTATCTCTTCTGTCCCTGATGCTACTGCTGTTTGGGAAATTGTTGATCCTTCTTCTTTGTATCCAGCTCCACTTAATACCTTCATGCCTTCTAGTGGTACGCAATTCTTCCCCCACCCAAGATCTTGA

Protein sequence

>Msa0789310

MASLFSLGRTEEENQQNNNPTTEFWYNTNDDSVVSNSYRGFEIWNQHLHQHQQHLLSLQQPQQQPQDLYSSGVVLGVRPTRVCSSDENRSTVFVGSGDISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPAARRRERQQQLSAPKSSQQQHGERDLNNNNSSLACTRLPTNPSLTLPSAGLLEEMNFPAVVNSPAEFRCVRVSSVDENEEEYAYSTAVNIGGHVFRGILYDYGPDHGNNSYNMATGNASNSSGTLLEGVAQPLNLISSVPDATAVWEIVDPSSLYPAPLNTFMPSSGTQFFPHPRS*