AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0789320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0789320 MtrunA17_Chr5g0404781 84.848 330 27 8 1 314 1 323 0.0 504
Msa0789320 MtrunA17_Chr8g0372461 52.023 346 119 12 1 314 1 331 4.14e-90 272
Msa0789320 MtrunA17_Chr3g0142171 42.500 320 141 12 1 309 1 288 3.65e-61 196
Msa0789320 MtrunA17_Chr1g0155791 51.739 230 86 6 99 314 120 338 3.82e-59 192
Msa0789320 MtrunA17_Chr4g0035591 46.853 143 56 1 101 243 20 142 1.29e-39 138
Msa0789320 MtrunA17_Chr5g0441921 48.366 153 67 2 101 241 124 276 2.28e-39 141
Msa0789320 MtrunA17_Chr3g0082511 44.375 160 73 3 101 246 134 291 7.62e-39 139
Msa0789320 MtrunA17_Chr8g0353111 36.957 230 105 8 43 249 78 290 1.43e-35 130
Msa0789320 MtrunA17_Chr2g0281741 62.162 37 14 0 99 135 148 184 1.85e-12 65.1
Msa0789320 MtrunA17_Chr0c01g0489181 59.459 37 15 0 99 135 65 101 6.34e-12 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0789320 AT5G66350.1 45.055 364 117 17 1 314 1 331 6.21e-73 228
Msa0789320 AT3G51060.1 46.626 326 111 11 35 314 62 370 3.15e-72 228
Msa0789320 AT5G66350.3 45.014 351 112 16 1 301 1 320 2.06e-70 221
Msa0789320 AT5G66350.2 45.014 351 112 16 1 301 1 320 4.10e-70 221
Msa0789320 AT1G75520.1 39.788 377 133 13 1 314 1 346 1.60e-64 207
Msa0789320 AT1G19790.2 38.753 369 145 14 1 313 1 344 1.61e-63 204
Msa0789320 AT1G19790.1 38.753 369 145 14 1 313 1 344 1.61e-63 204
Msa0789320 AT4G36260.1 39.053 338 161 14 1 312 1 319 3.15e-50 169
Msa0789320 AT2G18120.1 41.600 250 90 9 1 243 6 206 3.97e-46 155
Msa0789320 AT2G21400.2 52.778 144 51 3 101 241 10 139 1.84e-44 150
Msa0789320 AT2G21400.4 52.778 144 51 3 101 241 9 138 2.01e-44 150
Msa0789320 AT2G18120.2 40.964 249 91 9 1 243 6 204 5.94e-44 150
Msa0789320 AT2G21400.3 51.773 141 42 3 101 241 10 124 7.39e-43 145
Msa0789320 AT2G21400.1 51.773 141 42 3 101 241 9 123 8.52e-43 145
Msa0789320 AT5G12330.1 44.937 158 70 2 101 241 112 269 9.81e-37 134
Msa0789320 AT5G12330.2 44.937 158 70 2 101 241 112 269 9.81e-37 134
Msa0789320 AT5G12330.4 44.937 158 70 2 101 241 199 356 1.95e-36 135
Msa0789320 AT3G54430.1 41.290 155 66 6 97 244 37 173 3.48e-29 110
Msa0789320 AT5G33210.2 61.364 88 24 2 99 177 15 101 4.14e-29 108
Msa0789320 AT5G33210.1 61.364 88 24 2 99 177 50 136 9.82e-29 109
Msa0789320 AT5G12330.3 86.957 46 6 0 101 146 112 157 5.65e-23 95.5

Find 82 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAAATTCACTTTGAAATA+TGG 0.160002 5_2:+77280221 None:intergenic
GACAGAAGAGATAAGGTTTA+AGG 0.199519 5_2:+77278630 None:intergenic
ATCATTCGCCTAAACAAATT+AGG 0.250682 5_2:-77278490 Msa0789320:three_prime_UTR
CCCTGATGCTACTGCTGTTT+GGG 0.261168 5_2:-77278608 Msa0789320:CDS
TACTCCTCTGGTGTTGTGTT+AGG 0.305453 5_2:-77279880 Msa0789320:CDS
TGTTGTTGTTGAGATGATTT+AGG 0.309644 5_2:+77279631 None:intergenic
TCCCTGATGCTACTGCTGTT+TGG 0.338077 5_2:-77278609 Msa0789320:CDS
ATAATCCAACAACAGAATTC+TGG 0.358326 5_2:-77280032 Msa0789320:CDS
CACTTATATTAATAACTACT+AGG 0.365900 5_2:+77280301 None:intergenic
GAATTGAAGGTTTGGTTAGT+TGG 0.366672 5_2:+77280329 None:intergenic
ACTAGAATTAGAGGCGTTTC+CGG 0.373528 5_2:+77278681 None:intergenic
AATAGATCTACTGTGTTTGT+AGG 0.376062 5_2:-77279823 Msa0789320:CDS
TGGGAATAATAGTTACAATA+TGG 0.377378 5_2:-77278707 Msa0789320:CDS
AGAGTGAGTGAAGGGTTTGT+AGG 0.387801 5_2:+77279556 None:intergenic
CATATTTCAAAGTGAATTTG+TGG 0.392116 5_2:-77280220 Msa0789320:five_prime_UTR
TAACTATTATTCCCATGATC+TGG 0.405584 5_2:+77278715 None:intergenic
TGAATTCTCCAGCAGAGTTC+AGG 0.409422 5_2:-77278843 Msa0789320:CDS
CTACTAGGGTAAAGAATTGA+AGG 0.411713 5_2:+77280316 None:intergenic
TATGATTATGGTCCAGATCA+TGG 0.413474 5_2:-77278727 Msa0789320:CDS
CGAATGATGAATCAAGATCT+TGG 0.418725 5_2:+77278505 None:intergenic
CTTTCTCTTCTTCTAGCAGC+AGG 0.421698 5_2:+77279673 None:intergenic
AGGGTAAAGAATTGAAGGTT+TGG 0.424136 5_2:+77280321 None:intergenic
AAACTCATGTTAAGAGTACT+TGG 0.425175 5_2:-77279699 Msa0789320:CDS
ACAGAAGAGATAAGGTTTAA+GGG 0.430955 5_2:+77278631 None:intergenic
GGTTTGGAATAGTAGTAGTA+TGG 0.436546 5_2:-77280103 Msa0789320:exon
TCCCAAACAGCAGTAGCATC+AGG 0.439192 5_2:+77278607 None:intergenic
TTATACCAGAATTCTGTTGT+TGG 0.445028 5_2:+77280027 None:intergenic
TGTTAGGAGTGAGACCTACT+AGG 0.447826 5_2:-77279864 Msa0789320:CDS
GAGTGTACCACTAGAATTAG+AGG 0.455284 5_2:+77278672 None:intergenic
GCTGGAGAATTCACCACAGC+TGG 0.457156 5_2:+77278853 None:intergenic
GTTGATGTTGATGAAGATGT+TGG 0.457884 5_2:+77279950 None:intergenic
GATATAAGTTGTCAAGATTG+TGG 0.462555 5_2:-77279793 Msa0789320:CDS
CCACAAGATCTTTACTCCTC+TGG 0.463212 5_2:-77279892 Msa0789320:CDS
AAGAATTGCGTACCACTAGA+AGG 0.471301 5_2:+77278535 None:intergenic
TCTAGTGGTACACTCCTTGA+AGG 0.471939 5_2:-77278664 Msa0789320:CDS
TCTACTGTGTTTGTAGGAAG+TGG 0.474128 5_2:-77279817 Msa0789320:CDS
TTGTTGGATTATTATTCTGT+TGG 0.477389 5_2:+77280043 None:intergenic
CTCACGCACCTGAACTCTGC+TGG 0.492218 5_2:+77278835 None:intergenic
TCAGAAGAACAAACCCTAGT+AGG 0.499085 5_2:+77279850 None:intergenic
AGGGCTGAGCCACCCCTTCA+AGG 0.501243 5_2:+77278650 None:intergenic
GAATGATGAATCAAGATCTT+GGG 0.507602 5_2:+77278506 None:intergenic
CATCAGGGACAGAAGAGATA+AGG 0.508932 5_2:+77278623 None:intergenic
ATATAAGTTGTCAAGATTGT+GGG 0.512750 5_2:-77279792 Msa0789320:CDS
AAGGTTTGGTTAGTTGGTTG+AGG 0.513889 5_2:+77280335 None:intergenic
TCACTCACTCTCCCTTCAGC+AGG 0.521572 5_2:-77279544 Msa0789320:intron
AGATCTTGTGGCTGCTGCTG+AGG 0.524505 5_2:+77279904 None:intergenic
TAAACGAGTGCAAGCTAAAG+AGG 0.530926 5_2:+77279579 None:intergenic
CTAGTGGTACACTCCTTGAA+GGG 0.532650 5_2:-77278663 Msa0789320:CDS
AATAGTTACAATATGGCTAC+CGG 0.553111 5_2:-77278700 Msa0789320:CDS
GGAGCTGGATACAAAGAAGA+AGG 0.554978 5_2:+77278574 None:intergenic
GTTAGGAGTGAGACCTACTA+GGG 0.557590 5_2:-77279863 Msa0789320:CDS
GAAGGCATGAAGGTATTAAG+TGG 0.559260 5_2:+77278553 None:intergenic
TCAACAGCTGTAAACATTGG+AGG 0.560848 5_2:-77278772 Msa0789320:CDS
CAAGTTCTACATCTCATATG+AGG 0.561087 5_2:+77279748 None:intergenic
ATGATTATGGTCCAGATCAT+GGG 0.563960 5_2:-77278726 Msa0789320:CDS
GTTGTTTCTAATTCATACCG+TGG 0.564425 5_2:-77279988 Msa0789320:CDS
ATGAAGGTATTAAGTGGAGC+TGG 0.565074 5_2:+77278559 None:intergenic
ATGAATCAAGATCTTGGGTG+GGG 0.569684 5_2:+77278511 None:intergenic
ACTTATATTAATAACTACTA+GGG 0.573540 5_2:+77280302 None:intergenic
TGGTACACTCCTTGAAGGGG+TGG 0.576962 5_2:-77278659 Msa0789320:CDS
TGATGAATCAAGATCTTGGG+TGG 0.578391 5_2:+77278509 None:intergenic
ATATAGTATATACCTGCTGA+AGG 0.578577 5_2:+77279532 None:intergenic
AGAACTTGTTGCAAGAGTAG+AGG 0.587131 5_2:-77279733 Msa0789320:CDS
TATTCAACAGCTGTAAACAT+TGG 0.588034 5_2:-77278775 Msa0789320:CDS
CCAGAGGAGTAAAGATCTTG+TGG 0.588657 5_2:+77279892 None:intergenic
CTGAAGGGAGAGTGAGTGAA+GGG 0.593490 5_2:+77279548 None:intergenic
CAACAGCTGTAAACATTGGA+GGG 0.602052 5_2:-77278771 Msa0789320:CDS
CTCAGTTGATGAAAACGAAG+AGG 0.603171 5_2:-77278806 Msa0789320:CDS
AATACCTTCATGCCTTCTAG+TGG 0.605967 5_2:-77278547 Msa0789320:CDS
GATGAATCAAGATCTTGGGT+GGG 0.609126 5_2:+77278510 None:intergenic
CCCAAACAGCAGTAGCATCA+GGG 0.610175 5_2:+77278608 None:intergenic
CGTACCACTAGAAGGCATGA+AGG 0.621664 5_2:+77278543 None:intergenic
AACTCATGTTAAGAGTACTT+GGG 0.622414 5_2:-77279698 Msa0789320:CDS
TGAATCAAGATCTTGGGTGG+GGG 0.629021 5_2:+77278512 None:intergenic
AAATCATCTCAACAACAACA+TGG 0.641154 5_2:-77279628 Msa0789320:CDS
TAGTGGTACACTCCTTGAAG+GGG 0.649565 5_2:-77278662 Msa0789320:CDS
GCTGAAGGGAGAGTGAGTGA+AGG 0.652710 5_2:+77279547 None:intergenic
TATAGTATATACCTGCTGAA+GGG 0.659960 5_2:+77279533 None:intergenic
CACTCCTAACACAACACCAG+AGG 0.665208 5_2:+77279876 None:intergenic
GTATACATATATATAGATCG+AGG 0.691769 5_2:-77280155 Msa0789320:five_prime_UTR
GGAAACGCCTCTAATTCTAG+TGG 0.698556 5_2:-77278679 Msa0789320:CDS
GGTTCCAAATCTCAAAACCA+CGG 0.709690 5_2:+77279971 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTTATATTAATAACTACTA+GGG + chr5_2:77278565-77278584 None:intergenic 15.0%
!! TTATTGTTTATAATAGTGAT+CGG - chr5_2:77279817-77279836 Msa0789320:CDS 15.0%
!! ACTTATATTAATAACTACTA+GGG + chr5_2:77278565-77278584 None:intergenic 15.0%
!! TTATTGTTTATAATAGTGAT+CGG - chr5_2:77279817-77279836 Msa0789320:CDS 15.0%
!! CACTTATATTAATAACTACT+AGG + chr5_2:77278566-77278585 None:intergenic 20.0%
!!! AATTTGTGGTTAATTTTGAT+TGG - chr5_2:77278658-77278677 Msa0789320:CDS 20.0%
!! AAACAAACAAACTATTAGTT+AGG + chr5_2:77279929-77279948 None:intergenic 20.0%
!!! TGTTTTTTCCTAATTTGTTT+AGG + chr5_2:77280385-77280404 None:intergenic 20.0%
!! CACTTATATTAATAACTACT+AGG + chr5_2:77278566-77278585 None:intergenic 20.0%
!!! AATTTGTGGTTAATTTTGAT+TGG - chr5_2:77278658-77278677 Msa0789320:CDS 20.0%
!! AAACAAACAAACTATTAGTT+AGG + chr5_2:77279929-77279948 None:intergenic 20.0%
!!! TGTTTTTTCCTAATTTGTTT+AGG + chr5_2:77280385-77280404 None:intergenic 20.0%
!!! CACAAATTCACTTTGAAATA+TGG + chr5_2:77278646-77278665 None:intergenic 25.0%
! CATATTTCAAAGTGAATTTG+TGG - chr5_2:77278644-77278663 Msa0789320:CDS 25.0%
! GTATACATATATATAGATCG+AGG - chr5_2:77278709-77278728 Msa0789320:CDS 25.0%
!!! ATGGCTAGTTTATTTTCATT+AGG - chr5_2:77278780-77278799 Msa0789320:CDS 25.0%
! TTGTTGGATTATTATTCTGT+TGG + chr5_2:77278824-77278843 None:intergenic 25.0%
! ATATAAGTTGTCAAGATTGT+GGG - chr5_2:77279072-77279091 Msa0789320:intron 25.0%
! GACATATATGAACAAAGAAA+AGG + chr5_2:77279713-77279732 None:intergenic 25.0%
! GTTCTAACATTTACTTACTA+TGG - chr5_2:77279760-77279779 Msa0789320:CDS 25.0%
!! TATAACACAGCTTTATAGAA+AGG + chr5_2:77279868-77279887 None:intergenic 25.0%
! AAAAAATTAAGGGCTATTAG+AGG - chr5_2:77279977-77279996 Msa0789320:CDS 25.0%
!! AGAGGAATTTTGTATGATTA+TGG - chr5_2:77280125-77280144 Msa0789320:five_prime_UTR 25.0%
! TGGGAATAATAGTTACAATA+TGG - chr5_2:77280157-77280176 Msa0789320:five_prime_UTR 25.0%
!!! CACAAATTCACTTTGAAATA+TGG + chr5_2:77278646-77278665 None:intergenic 25.0%
! CATATTTCAAAGTGAATTTG+TGG - chr5_2:77278644-77278663 Msa0789320:CDS 25.0%
! GTATACATATATATAGATCG+AGG - chr5_2:77278709-77278728 Msa0789320:CDS 25.0%
!!! ATGGCTAGTTTATTTTCATT+AGG - chr5_2:77278780-77278799 Msa0789320:CDS 25.0%
! TTGTTGGATTATTATTCTGT+TGG + chr5_2:77278824-77278843 None:intergenic 25.0%
! ATATAAGTTGTCAAGATTGT+GGG - chr5_2:77279072-77279091 Msa0789320:intron 25.0%
! GACATATATGAACAAAGAAA+AGG + chr5_2:77279713-77279732 None:intergenic 25.0%
! GTTCTAACATTTACTTACTA+TGG - chr5_2:77279760-77279779 Msa0789320:CDS 25.0%
!! TATAACACAGCTTTATAGAA+AGG + chr5_2:77279868-77279887 None:intergenic 25.0%
! AAAAAATTAAGGGCTATTAG+AGG - chr5_2:77279977-77279996 Msa0789320:CDS 25.0%
!! AGAGGAATTTTGTATGATTA+TGG - chr5_2:77280125-77280144 Msa0789320:five_prime_UTR 25.0%
! TGGGAATAATAGTTACAATA+TGG - chr5_2:77280157-77280176 Msa0789320:five_prime_UTR 25.0%
!!! TCGAGGTTTTTTTCTTGATA+TGG - chr5_2:77278726-77278745 Msa0789320:CDS 30.0%
! TTGATATGGATTTTCGTTCA+GGG - chr5_2:77278740-77278759 Msa0789320:CDS 30.0%
ATAATCCAACAACAGAATTC+TGG - chr5_2:77278832-77278851 Msa0789320:CDS 30.0%
TTATACCAGAATTCTGTTGT+TGG + chr5_2:77278840-77278859 None:intergenic 30.0%
AATAGATCTACTGTGTTTGT+AGG - chr5_2:77279041-77279060 Msa0789320:intron 30.0%
GATATAAGTTGTCAAGATTG+TGG - chr5_2:77279071-77279090 Msa0789320:intron 30.0%
!! AAACTCATGTTAAGAGTACT+TGG - chr5_2:77279165-77279184 Msa0789320:intron 30.0%
!! AACTCATGTTAAGAGTACTT+GGG - chr5_2:77279166-77279185 Msa0789320:intron 30.0%
! TGTTGTTGTTGAGATGATTT+AGG + chr5_2:77279236-77279255 None:intergenic 30.0%
AAATCATCTCAACAACAACA+TGG - chr5_2:77279236-77279255 Msa0789320:intron 30.0%
TATAGTATATACCTGCTGAA+GGG + chr5_2:77279334-77279353 None:intergenic 30.0%
ATATAGTATATACCTGCTGA+AGG + chr5_2:77279335-77279354 None:intergenic 30.0%
! CTTCTGAAAAAGATAAGTGA+AGG - chr5_2:77279467-77279486 Msa0789320:intron 30.0%
ATTCTCTTCCAAAACTTTCT+CGG + chr5_2:77279495-77279514 None:intergenic 30.0%
!!! ACACTGTTTTGGAAAAGAAA+AGG + chr5_2:77279553-77279572 None:intergenic 30.0%
TTACTTACTATGGATACATG+AGG - chr5_2:77279770-77279789 Msa0789320:CDS 30.0%
TATTCAACAGCTGTAAACAT+TGG - chr5_2:77280089-77280108 Msa0789320:exon 30.0%
TAACTATTATTCCCATGATC+TGG + chr5_2:77280152-77280171 None:intergenic 30.0%
AATAGTTACAATATGGCTAC+CGG - chr5_2:77280164-77280183 Msa0789320:five_prime_UTR 30.0%
ACAGAAGAGATAAGGTTTAA+GGG + chr5_2:77280236-77280255 None:intergenic 30.0%
GAATGATGAATCAAGATCTT+GGG + chr5_2:77280361-77280380 None:intergenic 30.0%
ATCATTCGCCTAAACAAATT+AGG - chr5_2:77280374-77280393 Msa0789320:five_prime_UTR 30.0%
!!! TCGAGGTTTTTTTCTTGATA+TGG - chr5_2:77278726-77278745 Msa0789320:CDS 30.0%
! TTGATATGGATTTTCGTTCA+GGG - chr5_2:77278740-77278759 Msa0789320:CDS 30.0%
ATAATCCAACAACAGAATTC+TGG - chr5_2:77278832-77278851 Msa0789320:CDS 30.0%
TTATACCAGAATTCTGTTGT+TGG + chr5_2:77278840-77278859 None:intergenic 30.0%
AATAGATCTACTGTGTTTGT+AGG - chr5_2:77279041-77279060 Msa0789320:intron 30.0%
GATATAAGTTGTCAAGATTG+TGG - chr5_2:77279071-77279090 Msa0789320:intron 30.0%
!! AAACTCATGTTAAGAGTACT+TGG - chr5_2:77279165-77279184 Msa0789320:intron 30.0%
!! AACTCATGTTAAGAGTACTT+GGG - chr5_2:77279166-77279185 Msa0789320:intron 30.0%
! TGTTGTTGTTGAGATGATTT+AGG + chr5_2:77279236-77279255 None:intergenic 30.0%
AAATCATCTCAACAACAACA+TGG - chr5_2:77279236-77279255 Msa0789320:intron 30.0%
TATAGTATATACCTGCTGAA+GGG + chr5_2:77279334-77279353 None:intergenic 30.0%
ATATAGTATATACCTGCTGA+AGG + chr5_2:77279335-77279354 None:intergenic 30.0%
! CTTCTGAAAAAGATAAGTGA+AGG - chr5_2:77279467-77279486 Msa0789320:intron 30.0%
ATTCTCTTCCAAAACTTTCT+CGG + chr5_2:77279495-77279514 None:intergenic 30.0%
!!! ACACTGTTTTGGAAAAGAAA+AGG + chr5_2:77279553-77279572 None:intergenic 30.0%
TTACTTACTATGGATACATG+AGG - chr5_2:77279770-77279789 Msa0789320:CDS 30.0%
TATTCAACAGCTGTAAACAT+TGG - chr5_2:77280089-77280108 Msa0789320:exon 30.0%
TAACTATTATTCCCATGATC+TGG + chr5_2:77280152-77280171 None:intergenic 30.0%
AATAGTTACAATATGGCTAC+CGG - chr5_2:77280164-77280183 Msa0789320:five_prime_UTR 30.0%
ACAGAAGAGATAAGGTTTAA+GGG + chr5_2:77280236-77280255 None:intergenic 30.0%
GAATGATGAATCAAGATCTT+GGG + chr5_2:77280361-77280380 None:intergenic 30.0%
ATCATTCGCCTAAACAAATT+AGG - chr5_2:77280374-77280393 Msa0789320:five_prime_UTR 30.0%
! GAATTGAAGGTTTGGTTAGT+TGG + chr5_2:77278538-77278557 None:intergenic 35.0%
AGGGTAAAGAATTGAAGGTT+TGG + chr5_2:77278546-77278565 None:intergenic 35.0%
CTACTAGGGTAAAGAATTGA+AGG + chr5_2:77278551-77278570 None:intergenic 35.0%
! CTTGATATGGATTTTCGTTC+AGG - chr5_2:77278739-77278758 Msa0789320:CDS 35.0%
! GGTTTGGAATAGTAGTAGTA+TGG - chr5_2:77278761-77278780 Msa0789320:CDS 35.0%
!! GTTGTTTCTAATTCATACCG+TGG - chr5_2:77278876-77278895 Msa0789320:CDS 35.0%
! GTTGATGTTGATGAAGATGT+TGG + chr5_2:77278917-77278936 None:intergenic 35.0%
CAAGTTCTACATCTCATATG+AGG + chr5_2:77279119-77279138 None:intergenic 35.0%
TGTTGTTCTGACGAATGAAT+GGG - chr5_2:77279570-77279589 Msa0789320:CDS 35.0%
AATGAATGGGATCAATGACA+GGG - chr5_2:77279583-77279602 Msa0789320:CDS 35.0%
!! AAAGTAGTGTTGTTGGTTTG+TGG + chr5_2:77279676-77279695 None:intergenic 35.0%
TGTGAAGAAAGTAGTGTTGT+TGG + chr5_2:77279683-77279702 None:intergenic 35.0%
TATGATTATGGTCCAGATCA+TGG - chr5_2:77280137-77280156 Msa0789320:five_prime_UTR 35.0%
ATGATTATGGTCCAGATCAT+GGG - chr5_2:77280138-77280157 Msa0789320:five_prime_UTR 35.0%
GACAGAAGAGATAAGGTTTA+AGG + chr5_2:77280237-77280256 None:intergenic 35.0%
CGAATGATGAATCAAGATCT+TGG + chr5_2:77280362-77280381 None:intergenic 35.0%
! GAATTGAAGGTTTGGTTAGT+TGG + chr5_2:77278538-77278557 None:intergenic 35.0%
AGGGTAAAGAATTGAAGGTT+TGG + chr5_2:77278546-77278565 None:intergenic 35.0%
CTACTAGGGTAAAGAATTGA+AGG + chr5_2:77278551-77278570 None:intergenic 35.0%
! CTTGATATGGATTTTCGTTC+AGG - chr5_2:77278739-77278758 Msa0789320:CDS 35.0%
! GGTTTGGAATAGTAGTAGTA+TGG - chr5_2:77278761-77278780 Msa0789320:CDS 35.0%
!! GTTGTTTCTAATTCATACCG+TGG - chr5_2:77278876-77278895 Msa0789320:CDS 35.0%
! GTTGATGTTGATGAAGATGT+TGG + chr5_2:77278917-77278936 None:intergenic 35.0%
CAAGTTCTACATCTCATATG+AGG + chr5_2:77279119-77279138 None:intergenic 35.0%
TGTTGTTCTGACGAATGAAT+GGG - chr5_2:77279570-77279589 Msa0789320:CDS 35.0%
AATGAATGGGATCAATGACA+GGG - chr5_2:77279583-77279602 Msa0789320:CDS 35.0%
!! AAAGTAGTGTTGTTGGTTTG+TGG + chr5_2:77279676-77279695 None:intergenic 35.0%
TGTGAAGAAAGTAGTGTTGT+TGG + chr5_2:77279683-77279702 None:intergenic 35.0%
TATGATTATGGTCCAGATCA+TGG - chr5_2:77280137-77280156 Msa0789320:five_prime_UTR 35.0%
ATGATTATGGTCCAGATCAT+GGG - chr5_2:77280138-77280157 Msa0789320:five_prime_UTR 35.0%
GACAGAAGAGATAAGGTTTA+AGG + chr5_2:77280237-77280256 None:intergenic 35.0%
CGAATGATGAATCAAGATCT+TGG + chr5_2:77280362-77280381 None:intergenic 35.0%
! AAGGTTTGGTTAGTTGGTTG+AGG + chr5_2:77278532-77278551 None:intergenic 40.0%
! ATGGATTTTCGTTCAGGGTT+TGG - chr5_2:77278745-77278764 Msa0789320:CDS 40.0%
!!! CATACCGTGGTTTTGAGATT+TGG - chr5_2:77278889-77278908 Msa0789320:intron 40.0%
GGTTCCAAATCTCAAAACCA+CGG + chr5_2:77278896-77278915 None:intergenic 40.0%
TCAGAAGAACAAACCCTAGT+AGG + chr5_2:77279017-77279036 None:intergenic 40.0%
TCTACTGTGTTTGTAGGAAG+TGG - chr5_2:77279047-77279066 Msa0789320:intron 40.0%
!! AGAACTTGTTGCAAGAGTAG+AGG - chr5_2:77279131-77279150 Msa0789320:intron 40.0%
TAAACGAGTGCAAGCTAAAG+AGG + chr5_2:77279288-77279307 None:intergenic 40.0%
!!! TGAAGGTACCGAGAAAGTTT+TGG - chr5_2:77279484-77279503 Msa0789320:intron 40.0%
! TCGTCAGAACAACACTGTTT+TGG + chr5_2:77279564-77279583 None:intergenic 40.0%
! GTGTTGTTCTGACGAATGAA+TGG - chr5_2:77279569-77279588 Msa0789320:CDS 40.0%
GAATGAATGGGATCAATGAC+AGG - chr5_2:77279582-77279601 Msa0789320:CDS 40.0%
!! CTCAGTTGATGAAAACGAAG+AGG - chr5_2:77280058-77280077 Msa0789320:CDS 40.0%
TCAACAGCTGTAAACATTGG+AGG - chr5_2:77280092-77280111 Msa0789320:exon 40.0%
CAACAGCTGTAAACATTGGA+GGG - chr5_2:77280093-77280112 Msa0789320:exon 40.0%
!!! ATTGGAGGGCATGTTTTTAG+AGG - chr5_2:77280107-77280126 Msa0789320:five_prime_UTR 40.0%
!! ACTAGAATTAGAGGCGTTTC+CGG + chr5_2:77280186-77280205 None:intergenic 40.0%
GAGTGTACCACTAGAATTAG+AGG + chr5_2:77280195-77280214 None:intergenic 40.0%
!! ATGAAGGTATTAAGTGGAGC+TGG + chr5_2:77280308-77280327 None:intergenic 40.0%
!! GAAGGCATGAAGGTATTAAG+TGG + chr5_2:77280314-77280333 None:intergenic 40.0%
AATACCTTCATGCCTTCTAG+TGG - chr5_2:77280317-77280336 Msa0789320:five_prime_UTR 40.0%
AAGAATTGCGTACCACTAGA+AGG + chr5_2:77280332-77280351 None:intergenic 40.0%
ATGAATCAAGATCTTGGGTG+GGG + chr5_2:77280356-77280375 None:intergenic 40.0%
GATGAATCAAGATCTTGGGT+GGG + chr5_2:77280357-77280376 None:intergenic 40.0%
TGATGAATCAAGATCTTGGG+TGG + chr5_2:77280358-77280377 None:intergenic 40.0%
! AAGGTTTGGTTAGTTGGTTG+AGG + chr5_2:77278532-77278551 None:intergenic 40.0%
! ATGGATTTTCGTTCAGGGTT+TGG - chr5_2:77278745-77278764 Msa0789320:CDS 40.0%
!!! CATACCGTGGTTTTGAGATT+TGG - chr5_2:77278889-77278908 Msa0789320:intron 40.0%
GGTTCCAAATCTCAAAACCA+CGG + chr5_2:77278896-77278915 None:intergenic 40.0%
TCAGAAGAACAAACCCTAGT+AGG + chr5_2:77279017-77279036 None:intergenic 40.0%
TCTACTGTGTTTGTAGGAAG+TGG - chr5_2:77279047-77279066 Msa0789320:intron 40.0%
!! AGAACTTGTTGCAAGAGTAG+AGG - chr5_2:77279131-77279150 Msa0789320:intron 40.0%
TAAACGAGTGCAAGCTAAAG+AGG + chr5_2:77279288-77279307 None:intergenic 40.0%
!!! TGAAGGTACCGAGAAAGTTT+TGG - chr5_2:77279484-77279503 Msa0789320:intron 40.0%
! TCGTCAGAACAACACTGTTT+TGG + chr5_2:77279564-77279583 None:intergenic 40.0%
! GTGTTGTTCTGACGAATGAA+TGG - chr5_2:77279569-77279588 Msa0789320:CDS 40.0%
GAATGAATGGGATCAATGAC+AGG - chr5_2:77279582-77279601 Msa0789320:CDS 40.0%
!! CTCAGTTGATGAAAACGAAG+AGG - chr5_2:77280058-77280077 Msa0789320:CDS 40.0%
TCAACAGCTGTAAACATTGG+AGG - chr5_2:77280092-77280111 Msa0789320:exon 40.0%
CAACAGCTGTAAACATTGGA+GGG - chr5_2:77280093-77280112 Msa0789320:exon 40.0%
!!! ATTGGAGGGCATGTTTTTAG+AGG - chr5_2:77280107-77280126 Msa0789320:five_prime_UTR 40.0%
!! ACTAGAATTAGAGGCGTTTC+CGG + chr5_2:77280186-77280205 None:intergenic 40.0%
GAGTGTACCACTAGAATTAG+AGG + chr5_2:77280195-77280214 None:intergenic 40.0%
!! ATGAAGGTATTAAGTGGAGC+TGG + chr5_2:77280308-77280327 None:intergenic 40.0%
!! GAAGGCATGAAGGTATTAAG+TGG + chr5_2:77280314-77280333 None:intergenic 40.0%
AATACCTTCATGCCTTCTAG+TGG - chr5_2:77280317-77280336 Msa0789320:five_prime_UTR 40.0%
AAGAATTGCGTACCACTAGA+AGG + chr5_2:77280332-77280351 None:intergenic 40.0%
ATGAATCAAGATCTTGGGTG+GGG + chr5_2:77280356-77280375 None:intergenic 40.0%
GATGAATCAAGATCTTGGGT+GGG + chr5_2:77280357-77280376 None:intergenic 40.0%
TGATGAATCAAGATCTTGGG+TGG + chr5_2:77280358-77280377 None:intergenic 40.0%
CCAGAGGAGTAAAGATCTTG+TGG + chr5_2:77278975-77278994 None:intergenic 45.0%
CCACAAGATCTTTACTCCTC+TGG - chr5_2:77278972-77278991 Msa0789320:intron 45.0%
!! TACTCCTCTGGTGTTGTGTT+AGG - chr5_2:77278984-77279003 Msa0789320:intron 45.0%
TGTTAGGAGTGAGACCTACT+AGG - chr5_2:77279000-77279019 Msa0789320:intron 45.0%
GTTAGGAGTGAGACCTACTA+GGG - chr5_2:77279001-77279020 Msa0789320:intron 45.0%
CTTTCTCTTCTTCTAGCAGC+AGG + chr5_2:77279194-77279213 None:intergenic 45.0%
AGAGTGAGTGAAGGGTTTGT+AGG + chr5_2:77279311-77279330 None:intergenic 45.0%
! TGTGGAAGAGTGAGTGTTGT+TGG + chr5_2:77279658-77279677 None:intergenic 45.0%
! GGAGATGAATTTTCCAGCTG+TGG - chr5_2:77279998-77280017 Msa0789320:CDS 45.0%
TGAATTCTCCAGCAGAGTTC+AGG - chr5_2:77280021-77280040 Msa0789320:CDS 45.0%
GGAAACGCCTCTAATTCTAG+TGG - chr5_2:77280185-77280204 Msa0789320:five_prime_UTR 45.0%
TCTAGTGGTACACTCCTTGA+AGG - chr5_2:77280200-77280219 Msa0789320:five_prime_UTR 45.0%
CTAGTGGTACACTCCTTGAA+GGG - chr5_2:77280201-77280220 Msa0789320:five_prime_UTR 45.0%
TAGTGGTACACTCCTTGAAG+GGG - chr5_2:77280202-77280221 Msa0789320:five_prime_UTR 45.0%
CATCAGGGACAGAAGAGATA+AGG + chr5_2:77280244-77280263 None:intergenic 45.0%
GGAGCTGGATACAAAGAAGA+AGG + chr5_2:77280293-77280312 None:intergenic 45.0%
TGAATCAAGATCTTGGGTGG+GGG + chr5_2:77280355-77280374 None:intergenic 45.0%
CACAGAACAGAACTGCAAAC+GGG + chr5_2:77278434-77278453 None:intergenic 45.0%
GCACAGAACAGAACTGCAAA+CGG + chr5_2:77278435-77278454 None:intergenic 45.0%
CCAGAGGAGTAAAGATCTTG+TGG + chr5_2:77278975-77278994 None:intergenic 45.0%
CCACAAGATCTTTACTCCTC+TGG - chr5_2:77278972-77278991 Msa0789320:intron 45.0%
!! TACTCCTCTGGTGTTGTGTT+AGG - chr5_2:77278984-77279003 Msa0789320:intron 45.0%
TGTTAGGAGTGAGACCTACT+AGG - chr5_2:77279000-77279019 Msa0789320:intron 45.0%
GTTAGGAGTGAGACCTACTA+GGG - chr5_2:77279001-77279020 Msa0789320:intron 45.0%
CTTTCTCTTCTTCTAGCAGC+AGG + chr5_2:77279194-77279213 None:intergenic 45.0%
AGAGTGAGTGAAGGGTTTGT+AGG + chr5_2:77279311-77279330 None:intergenic 45.0%
! TGTGGAAGAGTGAGTGTTGT+TGG + chr5_2:77279658-77279677 None:intergenic 45.0%
! GGAGATGAATTTTCCAGCTG+TGG - chr5_2:77279998-77280017 Msa0789320:CDS 45.0%
TGAATTCTCCAGCAGAGTTC+AGG - chr5_2:77280021-77280040 Msa0789320:CDS 45.0%
GGAAACGCCTCTAATTCTAG+TGG - chr5_2:77280185-77280204 Msa0789320:five_prime_UTR 45.0%
TCTAGTGGTACACTCCTTGA+AGG - chr5_2:77280200-77280219 Msa0789320:five_prime_UTR 45.0%
CTAGTGGTACACTCCTTGAA+GGG - chr5_2:77280201-77280220 Msa0789320:five_prime_UTR 45.0%
TAGTGGTACACTCCTTGAAG+GGG - chr5_2:77280202-77280221 Msa0789320:five_prime_UTR 45.0%
CATCAGGGACAGAAGAGATA+AGG + chr5_2:77280244-77280263 None:intergenic 45.0%
GGAGCTGGATACAAAGAAGA+AGG + chr5_2:77280293-77280312 None:intergenic 45.0%
TGAATCAAGATCTTGGGTGG+GGG + chr5_2:77280355-77280374 None:intergenic 45.0%
!! AATTATCATTTAAAAAATTA+AGG - chr5_2:77279966-77279985 Msa0789320:CDS 5.0%
!! ATTATCATTTAAAAAATTAA+GGG - chr5_2:77279967-77279986 Msa0789320:CDS 5.0%
!! AATTATCATTTAAAAAATTA+AGG - chr5_2:77279966-77279985 Msa0789320:CDS 5.0%
!! ATTATCATTTAAAAAATTAA+GGG - chr5_2:77279967-77279986 Msa0789320:CDS 5.0%
CACTCCTAACACAACACCAG+AGG + chr5_2:77278991-77279010 None:intergenic 50.0%
CTGAAGGGAGAGTGAGTGAA+GGG + chr5_2:77279319-77279338 None:intergenic 50.0%
TCCCTGATGCTACTGCTGTT+TGG - chr5_2:77280255-77280274 Msa0789320:five_prime_UTR 50.0%
CCCAAACAGCAGTAGCATCA+GGG + chr5_2:77280259-77280278 None:intergenic 50.0%
! CCCTGATGCTACTGCTGTTT+GGG - chr5_2:77280256-77280275 Msa0789320:five_prime_UTR 50.0%
TCCCAAACAGCAGTAGCATC+AGG + chr5_2:77280260-77280279 None:intergenic 50.0%
! CGTACCACTAGAAGGCATGA+AGG + chr5_2:77280324-77280343 None:intergenic 50.0%
CACTCCTAACACAACACCAG+AGG + chr5_2:77278991-77279010 None:intergenic 50.0%
CTGAAGGGAGAGTGAGTGAA+GGG + chr5_2:77279319-77279338 None:intergenic 50.0%
TCCCTGATGCTACTGCTGTT+TGG - chr5_2:77280255-77280274 Msa0789320:five_prime_UTR 50.0%
CCCAAACAGCAGTAGCATCA+GGG + chr5_2:77280259-77280278 None:intergenic 50.0%
! CCCTGATGCTACTGCTGTTT+GGG - chr5_2:77280256-77280275 Msa0789320:five_prime_UTR 50.0%
TCCCAAACAGCAGTAGCATC+AGG + chr5_2:77280260-77280279 None:intergenic 50.0%
! CGTACCACTAGAAGGCATGA+AGG + chr5_2:77280324-77280343 None:intergenic 50.0%
AGATCTTGTGGCTGCTGCTG+AGG + chr5_2:77278963-77278982 None:intergenic 55.0%
GCTGAAGGGAGAGTGAGTGA+AGG + chr5_2:77279320-77279339 None:intergenic 55.0%
TCACTCACTCTCCCTTCAGC+AGG - chr5_2:77279320-77279339 Msa0789320:intron 55.0%
GCTGGAGAATTCACCACAGC+TGG + chr5_2:77280014-77280033 None:intergenic 55.0%
TGGTACACTCCTTGAAGGGG+TGG - chr5_2:77280205-77280224 Msa0789320:five_prime_UTR 55.0%
AGATCTTGTGGCTGCTGCTG+AGG + chr5_2:77278963-77278982 None:intergenic 55.0%
GCTGAAGGGAGAGTGAGTGA+AGG + chr5_2:77279320-77279339 None:intergenic 55.0%
TCACTCACTCTCCCTTCAGC+AGG - chr5_2:77279320-77279339 Msa0789320:intron 55.0%
GCTGGAGAATTCACCACAGC+TGG + chr5_2:77280014-77280033 None:intergenic 55.0%
TGGTACACTCCTTGAAGGGG+TGG - chr5_2:77280205-77280224 Msa0789320:five_prime_UTR 55.0%
CTCACGCACCTGAACTCTGC+TGG + chr5_2:77280032-77280051 None:intergenic 60.0%
CTCACGCACCTGAACTCTGC+TGG + chr5_2:77280032-77280051 None:intergenic 60.0%
AGGGCTGAGCCACCCCTTCA+AGG + chr5_2:77280217-77280236 None:intergenic 65.0%
AGGGCTGAGCCACCCCTTCA+AGG + chr5_2:77280217-77280236 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 77278434 77280452 77278434 ID=Msa0789320;Name=Msa0789320
chr5_2 mRNA 77278434 77280452 77278434 ID=Msa0789320-mRNA-1;Parent=Msa0789320;Name=Msa0789320-mRNA-1;_AED=0.00;_eAED=0.00;_QI=346|1|1|1|1|1|2|82|314
chr5_2 exon 77278434 77278898 77278434 ID=Msa0789320-mRNA-1:exon:23496;Parent=Msa0789320-mRNA-1
chr5_2 exon 77279545 77280452 77279545 ID=Msa0789320-mRNA-1:exon:23495;Parent=Msa0789320-mRNA-1
chr5_2 five_prime_UTR 77280107 77280452 77280107 ID=Msa0789320-mRNA-1:five_prime_utr;Parent=Msa0789320-mRNA-1
chr5_2 CDS 77279545 77280106 77279545 ID=Msa0789320-mRNA-1:cds;Parent=Msa0789320-mRNA-1
chr5_2 CDS 77278516 77278898 77278516 ID=Msa0789320-mRNA-1:cds;Parent=Msa0789320-mRNA-1
chr5_2 three_prime_UTR 77278434 77278515 77278434 ID=Msa0789320-mRNA-1:three_prime_utr;Parent=Msa0789320-mRNA-1
Gene Sequence

>Msa0789320

ATGGCTAGTTTATTTTCATTAGGAAGAACTGAAGAAGAAAACCAACAGAATAATAATCCAACAACAGAATTCTGGTATAATACGAATGATGATTCTGTTGTTTCTAATTCATACCGTGGTTTTGAGATTTGGAACCAACATCTTCATCAACATCAACAACACTTGCTTTCTTTACAACAACCTCAGCAGCAGCCACAAGATCTTTACTCCTCTGGTGTTGTGTTAGGAGTGAGACCTACTAGGGTTTGTTCTTCTGATGAGAATAGATCTACTGTGTTTGTAGGAAGTGGAGATATAAGTTGTCAAGATTGTGGGAATCAAGCTAAGAAAGATTGTCCTCATATGAGATGTAGAACTTGTTGCAAGAGTAGAGGTTTTGATTGTCAAACTCATGTTAAGAGTACTTGGGTTCCTGCTGCTAGAAGAAGAGAAAGACAACAACAACTTTCTGCTCCTAAATCATCTCAACAACAACATGGAGAGAGAGATCTTAACAATAACAATTCCTCTTTAGCTTGCACTCGTTTACCTACAAACCCTTCACTCACTCTCCCTTCAGCAGGGCTATTAGAGGAGATGAATTTTCCAGCTGTGGTGAATTCTCCAGCAGAGTTCAGGTGCGTGAGAGTTAGCTCAGTTGATGAAAACGAAGAGGAGTATGCATATTCAACAGCTGTAAACATTGGAGGGCATGTTTTTAGAGGAATTTTGTATGATTATGGTCCAGATCATGGGAATAATAGTTACAATATGGCTACCGGAAACGCCTCTAATTCTAGTGGTACACTCCTTGAAGGGGTGGCTCAGCCCTTAAACCTTATCTCTTCTGTCCCTGATGCTACTGCTGTTTGGGAAATTGTTGATCCTTCTTCTTTGTATCCAGCTCCACTTAATACCTTCATGCCTTCTAGTGGTACGCAATTCTTCCCCCACCCAAGATCTTGA

Protein sequence

>Msa0789320

MASLFSLGRTEEENQQNNNPTTEFWYNTNDDSVVSNSYRGFEIWNQHLHQHQQHLLSLQQPQQQPQDLYSSGVVLGVRPTRVCSSDENRSTVFVGSGDISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPAARRRERQQQLSAPKSSQQQHGERDLNNNNSSLACTRLPTNPSLTLPSAGLLEEMNFPAVVNSPAEFRCVRVSSVDENEEEYAYSTAVNIGGHVFRGILYDYGPDHGNNSYNMATGNASNSSGTLLEGVAQPLNLISSVPDATAVWEIVDPSSLYPAPLNTFMPSSGTQFFPHPRS*