AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0789330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0789330 MtrunA17_Chr2g0277531 89.097 321 27 4 1 316 1 318 0.0 571
Msa0789330 MtrunA17_Chr2g0277461 72.973 370 85 8 10 369 4 368 0.0 522
Msa0789330 MtrunA17_Chr5g0424931 47.291 406 161 13 13 375 13 408 6.52e-101 308
Msa0789330 MtrunA17_Chr1g0178011 46.361 371 173 11 12 365 5 366 1.93e-96 295
Msa0789330 MtrunA17_Chr5g0417281 44.385 374 190 9 10 372 2 368 3.30e-96 296
Msa0789330 MtrunA17_Chr5g0436761 45.333 375 185 11 11 372 4 371 7.94e-87 270
Msa0789330 MtrunA17_Chr2g0289221 48.276 319 141 11 12 316 13 321 6.92e-84 259
Msa0789330 MtrunA17_Chr3g0115271 39.855 414 183 13 14 373 14 415 1.89e-82 263
Msa0789330 MtrunA17_Chr5g0424801 41.081 370 183 13 13 362 6 360 5.00e-82 255
Msa0789330 MtrunA17_Chr5g0424741 41.063 414 177 13 12 363 5 413 8.37e-81 256
Msa0789330 MtrunA17_Chr5g0425261 41.333 375 175 14 13 362 6 360 1.65e-80 251
Msa0789330 MtrunA17_Chr5g0417211 46.395 319 150 10 11 316 4 314 3.06e-79 249
Msa0789330 MtrunA17_Chr2g0326761 35.500 400 187 14 16 355 8 396 2.17e-64 217
Msa0789330 MtrunA17_Chr1g0181211 34.367 387 183 11 16 339 24 402 1.01e-61 210
Msa0789330 MtrunA17_Chr4g0028971 34.783 414 191 15 9 355 2 403 2.40e-61 209
Msa0789330 MtrunA17_Chr1g0199681 34.586 399 191 13 19 358 94 481 3.31e-58 201
Msa0789330 MtrunA17_Chr5g0419861 80.556 108 19 1 64 169 16 123 8.15e-55 176
Msa0789330 MtrunA17_Chr7g0264171 31.796 412 203 15 16 358 28 430 3.45e-51 180
Msa0789330 MtrunA17_Chr7g0264161 36.246 309 167 11 29 316 2 301 3.56e-48 165
Msa0789330 MtrunA17_Chr5g0425661 45.729 199 97 4 19 213 37 228 3.78e-48 163
Msa0789330 MtrunA17_Chr4g0070181 32.378 349 199 12 16 338 20 357 1.06e-41 156
Msa0789330 MtrunA17_Chr4g0009751 31.148 366 209 13 19 361 19 364 2.22e-40 150
Msa0789330 MtrunA17_Chr2g0276781 30.854 363 220 12 16 355 20 374 4.29e-40 150
Msa0789330 MtrunA17_Chr2g0282961 28.647 377 223 12 19 363 53 415 4.55e-39 147
Msa0789330 MtrunA17_Chr1g0156321 30.435 345 208 10 16 336 40 376 4.94e-39 148
Msa0789330 MtrunA17_Chr2g0285461 30.199 351 222 8 19 349 23 370 8.21e-39 147
Msa0789330 MtrunA17_Chr2g0301251 31.503 346 206 11 16 338 20 357 1.21e-38 147
Msa0789330 MtrunA17_Chr8g0385791 31.594 345 197 13 19 336 59 391 1.43e-38 147
Msa0789330 MtrunA17_Chr8g0376771 30.769 351 219 9 19 349 23 369 2.01e-38 146
Msa0789330 MtrunA17_Chr8g0389081 30.857 350 207 11 16 339 29 369 3.50e-38 145
Msa0789330 MtrunA17_Chr5g0433301 28.691 359 231 9 2 339 7 361 6.89e-38 145
Msa0789330 MtrunA17_Chr3g0109391 29.143 350 213 10 16 339 23 363 5.06e-37 142
Msa0789330 MtrunA17_Chr8g0346711 28.767 365 222 11 16 360 26 372 1.26e-35 137
Msa0789330 MtrunA17_Chr7g0239061 30.725 345 204 12 16 336 11 344 8.17e-35 135
Msa0789330 MtrunA17_Chr4g0046371 29.268 410 223 16 14 375 33 423 9.24e-35 135
Msa0789330 MtrunA17_Chr2g0326281 31.347 386 208 15 19 356 56 432 1.20e-34 135
Msa0789330 MtrunA17_Chr4g0029671 30.199 351 204 13 19 336 54 396 2.30e-30 122
Msa0789330 MtrunA17_Chr5g0424791 43.151 146 75 3 73 218 14 151 1.81e-24 97.8
Msa0789330 MtrunA17_Chr5g0425651 48.361 122 52 5 238 349 1 121 1.93e-24 97.1
Msa0789330 MtrunA17_Chr8g0356211 25.893 224 136 8 135 336 5 220 2.20e-14 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0789330 AT1G77850.2 36.203 395 191 11 15 358 15 399 2.17e-70 231
Msa0789330 AT1G77850.1 36.203 395 191 11 15 358 15 399 2.30e-70 231
Msa0789330 AT4G30080.1 35.263 380 181 10 16 339 16 386 1.81e-61 209
Msa0789330 AT2G28350.2 33.735 415 196 15 11 358 2 404 1.48e-57 199
Msa0789330 AT2G28350.1 33.735 415 196 15 11 358 2 404 2.05e-57 199
Msa0789330 AT4G23980.2 31.378 341 209 9 15 336 8 342 1.07e-44 163
Msa0789330 AT4G23980.1 31.378 341 209 9 15 336 8 342 1.45e-44 163
Msa0789330 AT1G34390.1 32.153 367 210 13 14 357 22 372 2.96e-43 159
Msa0789330 AT1G35540.1 32.514 366 212 13 14 357 22 374 4.41e-43 158
Msa0789330 AT1G34310.1 32.362 343 200 11 14 336 22 352 1.09e-42 157
Msa0789330 AT1G35520.1 32.065 368 211 13 14 357 22 374 1.30e-42 157
Msa0789330 AT2G33860.1 32.277 347 194 11 19 336 54 388 5.41e-42 155
Msa0789330 AT1G35240.1 30.959 365 219 12 14 357 22 374 5.48e-41 152
Msa0789330 AT2G46530.1 29.333 375 236 10 15 370 17 381 2.50e-40 150
Msa0789330 AT2G46530.3 29.333 375 236 10 15 370 38 402 2.80e-40 150
Msa0789330 AT5G20730.3 31.429 350 204 11 15 338 20 359 3.54e-39 149
Msa0789330 AT5G20730.1 31.429 350 204 11 15 338 20 359 3.87e-39 149
Msa0789330 AT5G37020.2 29.363 361 224 11 2 339 7 359 4.06e-39 148
Msa0789330 AT5G37020.1 29.363 361 224 11 2 339 7 359 5.64e-39 148
Msa0789330 AT1G34410.1 30.685 365 220 12 14 357 22 374 7.07e-39 147
Msa0789330 AT1G19850.1 30.685 365 211 11 1 336 37 388 8.48e-39 148
Msa0789330 AT1G19850.2 30.685 365 211 11 1 336 26 377 9.49e-39 147
Msa0789330 AT5G20730.2 31.429 350 203 12 15 338 20 358 1.47e-38 147
Msa0789330 AT3G61830.1 30.725 345 205 12 15 336 21 354 5.62e-38 144
Msa0789330 AT5G62000.4 30.423 378 222 15 16 364 58 423 1.15e-37 144
Msa0789330 AT5G62000.2 30.423 378 222 15 16 364 58 423 1.33e-37 144
Msa0789330 AT5G62000.5 30.423 378 222 15 16 364 58 423 1.33e-37 144
Msa0789330 AT5G62000.3 30.423 378 222 15 16 364 58 423 1.33e-37 144
Msa0789330 AT5G62000.1 30.423 378 222 15 16 364 58 423 1.33e-37 144
Msa0789330 AT1G30330.1 30.641 359 216 10 16 349 20 370 1.35e-37 144
Msa0789330 AT1G30330.3 30.641 359 216 10 16 349 22 372 1.42e-37 144
Msa0789330 AT1G30330.2 30.641 359 216 10 16 349 22 372 1.42e-37 144
Msa0789330 AT1G19220.1 30.659 349 205 12 16 338 20 357 3.46e-37 143
Msa0789330 AT5G60450.2 29.380 371 224 12 14 353 36 399 1.51e-35 138
Msa0789330 AT1G59750.4 28.689 366 218 12 19 355 22 373 2.06e-35 137
Msa0789330 AT1G59750.2 28.689 366 218 12 19 355 22 373 2.10e-35 137
Msa0789330 AT1G59750.1 28.689 366 218 12 19 355 22 373 2.49e-35 137
Msa0789330 AT1G59750.3 28.689 366 218 12 19 355 22 373 2.49e-35 137
Msa0789330 AT5G60450.1 29.268 369 223 12 16 353 62 423 4.17e-35 137
Msa0789330 AT1G34170.1 29.769 346 207 13 14 336 20 352 1.68e-34 133
Msa0789330 AT1G34170.2 29.762 336 194 13 14 336 20 326 1.61e-32 127
Msa0789330 AT1G34170.3 29.882 338 191 13 14 336 20 326 3.22e-32 127
Msa0789330 AT3G61830.2 30.314 287 174 9 69 336 24 303 2.11e-27 114
Msa0789330 AT1G43950.1 32.258 217 122 7 14 221 22 222 6.78e-27 107
Msa0789330 AT2G33860.2 32.479 234 132 8 125 336 2 231 1.04e-26 110
Msa0789330 AT5G37020.3 30.508 236 141 8 125 339 31 264 2.58e-24 105
Msa0789330 AT2G46530.2 30.112 269 162 9 121 370 33 294 1.15e-22 99.8
Msa0789330 ATMG00940.1 38.843 121 63 6 210 327 44 156 9.09e-13 66.2

Find 100 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAATGCAACTTTGGTATT+TGG 0.133681 5_2:-77330172 None:intergenic
TCTCAATATCATAGGTTAAC+TGG 0.218607 5_2:+77332052 Msa0789330:intron
TTCATCTTAACTCTCATTCT+AGG 0.234993 5_2:-77330926 None:intergenic
TATCTCGTACGTCTAATTTA+TGG 0.240815 5_2:+77330996 Msa0789330:CDS
CACCATGGGCTGACTCTTCT+TGG 0.263929 5_2:-77332099 None:intergenic
CTCATCATCGTCGTTGCAAT+TGG 0.314881 5_2:-77330423 None:intergenic
GTAGAGATTGTCCCTTGATA+TGG 0.324016 5_2:-77330971 None:intergenic
AACGACGATGATGAGGTAAT+TGG 0.328138 5_2:+77330431 Msa0789330:CDS
GCTGCTGTTGGTGCTGGTGC+TGG 0.335243 5_2:-77330097 None:intergenic
GTATGCTTGCTTACATTAGT+AGG 0.336336 5_2:-77330476 None:intergenic
GCATCAACATCATTGGTTAT+TGG 0.339316 5_2:-77330374 None:intergenic
TTAACAAACGAACTCCATTC+AGG 0.339363 5_2:-77330650 None:intergenic
CGCATGTCCACCCTCAAATC+TGG 0.363208 5_2:+77330126 Msa0789330:CDS
CAACGGGAAAATTATTTGTT+GGG 0.375166 5_2:+77330720 Msa0789330:CDS
ATGGTTGCTGCTGTTGGTGC+TGG 0.385990 5_2:-77330103 None:intergenic
CAAATCTGGCAGACATTAAC+CGG 0.388348 5_2:+77330140 Msa0789330:CDS
TAAACTCTTGAATGCAACTT+TGG 0.402834 5_2:-77330179 None:intergenic
TCAACGGGAAAATTATTTGT+TGG 0.404341 5_2:+77330719 Msa0789330:CDS
CTGACGTTCATGGTGAAGTC+TGG 0.406535 5_2:+77330576 Msa0789330:CDS
CTCCTCGTCACTGACGTTCA+TGG 0.407231 5_2:+77330566 Msa0789330:CDS
AATGGAGTTCGTTTGTTAAG+AGG 0.407313 5_2:+77330654 Msa0789330:CDS
AGGAATCCCCTTATATGATA+AGG 0.414977 5_2:+77332220 Msa0789330:CDS
TAATTTATGGCGCATGCTAC+AGG 0.422222 5_2:+77331009 Msa0789330:CDS
ATTTCCCTCAAACGTGCATC+AGG 0.435910 5_2:+77332132 Msa0789330:CDS
TGAGTTGGAGAAGGCAGTAA+TGG 0.441158 5_2:+77330778 Msa0789330:CDS
ACTATCCTCGAGGTGATGAT+TGG 0.444363 5_2:+77330846 Msa0789330:CDS
GACACAGGCATCAACATCAT+TGG 0.444932 5_2:-77330381 None:intergenic
GTTAATGTCTGCCAGATTTG+AGG 0.445255 5_2:-77330137 None:intergenic
TCATCTTAACTCTCATTCTA+GGG 0.445548 5_2:-77330925 None:intergenic
GATATAAAACACGTTTCTCT+TGG 0.446560 5_2:-77330627 None:intergenic
TGCCCCATTAAGTGATGAAA+AGG 0.448788 5_2:+77332200 Msa0789330:CDS
AGGTAATTGGTTCGTTTACA+AGG 0.453827 5_2:+77330444 Msa0789330:CDS
TGAAGACTGATAAATCTTCA+AGG 0.454632 5_2:+77330945 Msa0789330:CDS
TGGGAACCTCATGAGGGTCT+TGG 0.457592 5_2:-77330403 None:intergenic
AATTATTTGTTGGGATTCGC+AGG 0.462606 5_2:+77330729 Msa0789330:CDS
GTCGACCTGATGCACGTTTG+AGG 0.464249 5_2:-77332137 None:intergenic
GGATAGTAAACAATTTCAAA+TGG 0.472676 5_2:-77330830 None:intergenic
AGTAATGGAGGCAGTGAAGT+TGG 0.472794 5_2:+77330793 Msa0789330:CDS
TTAATGTCTGCCAGATTTGA+GGG 0.479203 5_2:-77330136 None:intergenic
ATGAATCAATGAAAATTCAA+TGG 0.482116 5_2:+77330900 Msa0789330:CDS
GGAGTGAATGTAAGCATTGG+AGG 0.486006 5_2:-77330243 None:intergenic
TCTCTTGGCAAACCCGTGGC+AGG 0.490609 5_2:-77330612 None:intergenic
TCATCATCGTCGTTGCAATT+GGG 0.492508 5_2:-77330422 None:intergenic
GAAAATATCTTCCCTCCGCT+TGG 0.492876 5_2:+77330524 Msa0789330:CDS
TAGAGATTGTCCCTTGATAT+GGG 0.494859 5_2:-77330970 None:intergenic
CTCAATATCATAGGTTAACT+GGG 0.496428 5_2:+77332053 Msa0789330:intron
CTCATGAGGGTCTTGGACAC+AGG 0.498403 5_2:-77330396 None:intergenic
TATGCTTGCTTACATTAGTA+GGG 0.498565 5_2:-77330475 None:intergenic
TGGTATTTGGACAGCAGTGC+CGG 0.499421 5_2:-77330159 None:intergenic
TGGCAAACCCGTGGCAGGCA+TGG 0.500790 5_2:-77330607 None:intergenic
AAGTTTCACCATGCCTGCCA+CGG 0.506565 5_2:+77330599 Msa0789330:CDS
TCGACCTGATGCACGTTTGA+GGG 0.510461 5_2:-77332136 None:intergenic
TAACAAACGAACTCCATTCA+GGG 0.512751 5_2:-77330649 None:intergenic
TCTTCAAGGATCCCATATCA+AGG 0.512818 5_2:+77330959 Msa0789330:CDS
ATGTAAGCATTGGAGGAGGA+AGG 0.516472 5_2:-77330236 None:intergenic
AGTTTCACCATGCCTGCCAC+GGG 0.517459 5_2:+77330600 Msa0789330:CDS
CATGCGATGGTTGCTGCTGT+TGG 0.533873 5_2:-77330109 None:intergenic
TTGCAATTGGGAACCTCATG+AGG 0.534875 5_2:-77330410 None:intergenic
GGAGGCAGTGAAGTTGGCAG+AGG 0.547497 5_2:+77330799 Msa0789330:CDS
TATCTTCCCTCCGCTTGGCA+TGG 0.558368 5_2:+77330529 Msa0789330:CDS
CGCCGATCCTCACACTGATG+AGG 0.560935 5_2:+77330328 Msa0789330:CDS
AAGGGAGTGAATGTAAGCAT+TGG 0.561164 5_2:-77330246 None:intergenic
CTGGTGCTGGTTGAGAGACA+TGG 0.567756 5_2:-77330084 None:intergenic
GCATATTCTAAGTGGCCTTG+TGG 0.574209 5_2:-77330209 None:intergenic
GTGAATGTAAGCATTGGAGG+AGG 0.588009 5_2:-77330240 None:intergenic
GTTGGAGAAGGCAGTAATGG+AGG 0.592416 5_2:+77330781 Msa0789330:CDS
TGGGATTCGCAGGAAAGCCG+CGG 0.593939 5_2:+77330739 Msa0789330:CDS
GGAGCAAAAGAAAGATGAGT+TGG 0.594103 5_2:+77330763 Msa0789330:CDS
GACCTCATCAGTGTGAGGAT+CGG 0.595759 5_2:-77330330 None:intergenic
GAAATAAGTTCAACCCACCA+TGG 0.601634 5_2:-77332114 None:intergenic
AAAGAAAGATGAGTTGGAGA+AGG 0.605720 5_2:+77330769 Msa0789330:CDS
AAATCTCCATGCCAAGCGGA+GGG 0.609417 5_2:-77330535 None:intergenic
CTTCAAGGATCCCATATCAA+GGG 0.609531 5_2:+77330960 Msa0789330:CDS
GAGATGATACAGATAGTGAA+AGG 0.609814 5_2:-77330290 None:intergenic
AAATAAGTTCAACCCACCAT+GGG 0.611317 5_2:-77332113 None:intergenic
GAAATCTCCATGCCAAGCGG+AGG 0.617181 5_2:-77330536 None:intergenic
AAGAAGAGTCAGCCCATGGT+GGG 0.617483 5_2:+77332101 Msa0789330:CDS
CACCATGAACGTCAGTGACG+AGG 0.617900 5_2:-77330568 None:intergenic
CGTTTCTCTTGGCAAACCCG+TGG 0.618791 5_2:-77330616 None:intergenic
AAAACGTTGAAGATCATGAA+GGG 0.620045 5_2:-77330264 None:intergenic
CACTATCTGTATCATCTCCG+CGG 0.622122 5_2:+77330295 Msa0789330:CDS
AAGGAGAAGCATATTCTAAG+TGG 0.626940 5_2:-77330217 None:intergenic
GAAAACGTTGAAGATCATGA+AGG 0.628457 5_2:-77330265 None:intergenic
CAATTGCAACGACGATGATG+AGG 0.630770 5_2:+77330424 Msa0789330:CDS
GAAATTGTTTACTATCCTCG+AGG 0.641156 5_2:+77330836 Msa0789330:CDS
TGCAATTGGGAACCTCATGA+GGG 0.643730 5_2:-77330409 None:intergenic
ATTTGAGGGTGGACATGCGA+TGG 0.643879 5_2:-77330122 None:intergenic
TTCCAAGAAGAGTCAGCCCA+TGG 0.644012 5_2:+77332097 Msa0789330:CDS
ATGCTTGCTTACATTAGTAG+GGG 0.652528 5_2:-77330474 None:intergenic
CAAGAAGAGTCAGCCCATGG+TGG 0.652994 5_2:+77332100 Msa0789330:CDS
CATGAACGTCAGTGACGAGG+AGG 0.677277 5_2:-77330565 None:intergenic
GCGAAGACCTCATCAGTGTG+AGG 0.682334 5_2:-77330335 None:intergenic
ATGTCTGCCAGATTTGAGGG+TGG 0.682807 5_2:-77330133 None:intergenic
ATCGGCGAGGAGATCAACCG+CGG 0.684227 5_2:-77330312 None:intergenic
TGAGAAATCTCCATGCCAAG+CGG 0.686661 5_2:-77330539 None:intergenic
CTGTGTCCAAGACCCTCATG+AGG 0.688345 5_2:+77330397 Msa0789330:CDS
GATTCGCAGGAAAGCCGCGG+CGG 0.692782 5_2:+77330742 Msa0789330:CDS
TCATGCCAATCATCACCTCG+AGG 0.713899 5_2:-77330851 None:intergenic
AAGAGGAAGAAACTCGACGT+CGG 0.718798 5_2:+77330671 Msa0789330:CDS
CATCAGTGTGAGGATCGGCG+AGG 0.752555 5_2:-77330325 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTTCTTTTTTTTTTTTTTT+TGG + chr5_2:77331039-77331058 Msa0789330:intron 10.0%
!!! AAAAATGATTTTTTTTTGAA+AGG - chr5_2:77331614-77331633 None:intergenic 10.0%
!!! TCTTCTTTTTTTTTTTTTTT+TGG + chr5_2:77331039-77331058 Msa0789330:intron 10.0%
!!! AAAAATGATTTTTTTTTGAA+AGG - chr5_2:77331614-77331633 None:intergenic 10.0%
!!! AATAATTTTAGAATTACTGT+GGG - chr5_2:77331260-77331279 None:intergenic 15.0%
!!! TAATAATTTTAGAATTACTG+TGG - chr5_2:77331261-77331280 None:intergenic 15.0%
!! ATTATAGTTAAAGTTTATAG+TGG + chr5_2:77331434-77331453 Msa0789330:intron 15.0%
!! ATGATATTGAGATAAAAAAA+GGG - chr5_2:77332044-77332063 None:intergenic 15.0%
!! TATGATATTGAGATAAAAAA+AGG - chr5_2:77332045-77332064 None:intergenic 15.0%
!!! TTTTTTTATCTCAATATCAT+AGG + chr5_2:77332044-77332063 Msa0789330:intron 15.0%
!!! AATAATTTTAGAATTACTGT+GGG - chr5_2:77331260-77331279 None:intergenic 15.0%
!!! TAATAATTTTAGAATTACTG+TGG - chr5_2:77331261-77331280 None:intergenic 15.0%
!! ATTATAGTTAAAGTTTATAG+TGG + chr5_2:77331434-77331453 Msa0789330:intron 15.0%
!! ATGATATTGAGATAAAAAAA+GGG - chr5_2:77332044-77332063 None:intergenic 15.0%
!! TATGATATTGAGATAAAAAA+AGG - chr5_2:77332045-77332064 None:intergenic 15.0%
!!! TTTTTTTATCTCAATATCAT+AGG + chr5_2:77332044-77332063 Msa0789330:intron 15.0%
!! ATGAATCAATGAAAATTCAA+TGG + chr5_2:77330900-77330919 Msa0789330:CDS 20.0%
!! CTAATATTTATGAAGCAATT+AGG - chr5_2:77331163-77331182 None:intergenic 20.0%
!!! TGTCGATTAATTTAGTATTT+TGG + chr5_2:77331303-77331322 Msa0789330:intron 20.0%
!!! GTCGATTAATTTAGTATTTT+GGG + chr5_2:77331304-77331323 Msa0789330:intron 20.0%
!! TAACTACATAGATTAAAACT+TGG - chr5_2:77331464-77331483 None:intergenic 20.0%
!!! AAATACTTTTAATGCAATGT+AGG + chr5_2:77331931-77331950 Msa0789330:intron 20.0%
!!! TTCTTATCGATTAAAAGTAT+TGG - chr5_2:77331972-77331991 None:intergenic 20.0%
!! ACAAAAACCTTATCATATAA+GGG - chr5_2:77332230-77332249 None:intergenic 20.0%
!! TACAAAAACCTTATCATATA+AGG - chr5_2:77332231-77332250 None:intergenic 20.0%
!! ATGAATCAATGAAAATTCAA+TGG + chr5_2:77330900-77330919 Msa0789330:CDS 20.0%
!! CTAATATTTATGAAGCAATT+AGG - chr5_2:77331163-77331182 None:intergenic 20.0%
!!! TGTCGATTAATTTAGTATTT+TGG + chr5_2:77331303-77331322 Msa0789330:intron 20.0%
!!! GTCGATTAATTTAGTATTTT+GGG + chr5_2:77331304-77331323 Msa0789330:intron 20.0%
!! TAACTACATAGATTAAAACT+TGG - chr5_2:77331464-77331483 None:intergenic 20.0%
!!! AAATACTTTTAATGCAATGT+AGG + chr5_2:77331931-77331950 Msa0789330:intron 20.0%
!!! TTCTTATCGATTAAAAGTAT+TGG - chr5_2:77331972-77331991 None:intergenic 20.0%
!! ACAAAAACCTTATCATATAA+GGG - chr5_2:77332230-77332249 None:intergenic 20.0%
!! TACAAAAACCTTATCATATA+AGG - chr5_2:77332231-77332250 None:intergenic 20.0%
!! TGTTTTCATGAAAAACTCAA+CGG + chr5_2:77330703-77330722 Msa0789330:CDS 25.0%
! GGATAGTAAACAATTTCAAA+TGG - chr5_2:77330833-77330852 None:intergenic 25.0%
!! TATGAAGTGTCATCTAATTA+TGG - chr5_2:77331107-77331126 None:intergenic 25.0%
! TCATTGTGAAGCAAAATAAA+CGG - chr5_2:77331135-77331154 None:intergenic 25.0%
!! GAACAAAGAGTAGTATTTTA+AGG + chr5_2:77331384-77331403 Msa0789330:intron 25.0%
!!! TTCTAAGTTTTTTAGTTGAG+GGG - chr5_2:77332167-77332186 None:intergenic 25.0%
!!! GTTCTAAGTTTTTTAGTTGA+GGG - chr5_2:77332168-77332187 None:intergenic 25.0%
!!! AGTTCTAAGTTTTTTAGTTG+AGG - chr5_2:77332169-77332188 None:intergenic 25.0%
!! ATTCCTTTTCATCACTTAAT+GGG - chr5_2:77332206-77332225 None:intergenic 25.0%
! CAAAAACCTTATCATATAAG+GGG - chr5_2:77332229-77332248 None:intergenic 25.0%
!! TGTTTTCATGAAAAACTCAA+CGG + chr5_2:77330703-77330722 Msa0789330:CDS 25.0%
! GGATAGTAAACAATTTCAAA+TGG - chr5_2:77330833-77330852 None:intergenic 25.0%
!! TATGAAGTGTCATCTAATTA+TGG - chr5_2:77331107-77331126 None:intergenic 25.0%
! TCATTGTGAAGCAAAATAAA+CGG - chr5_2:77331135-77331154 None:intergenic 25.0%
!! GAACAAAGAGTAGTATTTTA+AGG + chr5_2:77331384-77331403 Msa0789330:intron 25.0%
!!! TTCTAAGTTTTTTAGTTGAG+GGG - chr5_2:77332167-77332186 None:intergenic 25.0%
!!! GTTCTAAGTTTTTTAGTTGA+GGG - chr5_2:77332168-77332187 None:intergenic 25.0%
!!! AGTTCTAAGTTTTTTAGTTG+AGG - chr5_2:77332169-77332188 None:intergenic 25.0%
!! ATTCCTTTTCATCACTTAAT+GGG - chr5_2:77332206-77332225 None:intergenic 25.0%
! CAAAAACCTTATCATATAAG+GGG - chr5_2:77332229-77332248 None:intergenic 25.0%
TTGAATGCAACTTTGGTATT+TGG - chr5_2:77330175-77330194 None:intergenic 30.0%
TAAACTCTTGAATGCAACTT+TGG - chr5_2:77330182-77330201 None:intergenic 30.0%
! AGAGTTTACTATTTTCCACA+AGG + chr5_2:77330194-77330213 Msa0789330:CDS 30.0%
AAAACGTTGAAGATCATGAA+GGG - chr5_2:77330267-77330286 None:intergenic 30.0%
TATGCTTGCTTACATTAGTA+GGG - chr5_2:77330478-77330497 None:intergenic 30.0%
! AGCATACATTTTACATACCT+CGG + chr5_2:77330492-77330511 Msa0789330:CDS 30.0%
GATATAAAACACGTTTCTCT+TGG - chr5_2:77330630-77330649 None:intergenic 30.0%
! GTTTTCATGAAAAACTCAAC+GGG + chr5_2:77330704-77330723 Msa0789330:CDS 30.0%
TCAACGGGAAAATTATTTGT+TGG + chr5_2:77330719-77330738 Msa0789330:CDS 30.0%
CAACGGGAAAATTATTTGTT+GGG + chr5_2:77330720-77330739 Msa0789330:CDS 30.0%
TCATCTTAACTCTCATTCTA+GGG - chr5_2:77330928-77330947 None:intergenic 30.0%
TTCATCTTAACTCTCATTCT+AGG - chr5_2:77330929-77330948 None:intergenic 30.0%
TGAAGACTGATAAATCTTCA+AGG + chr5_2:77330945-77330964 Msa0789330:CDS 30.0%
TATCTCGTACGTCTAATTTA+TGG + chr5_2:77330996-77331015 Msa0789330:CDS 30.0%
CATTGTGAAGCAAAATAAAC+GGG - chr5_2:77331134-77331153 None:intergenic 30.0%
TATTAGAGCAAGTATGTTAC+TGG + chr5_2:77331276-77331295 Msa0789330:intron 30.0%
ATGCACTATTGTTCAAATGA+GGG - chr5_2:77331719-77331738 None:intergenic 30.0%
AATGCACTATTGTTCAAATG+AGG - chr5_2:77331720-77331739 None:intergenic 30.0%
TGTAATATCTCATGTATGTG+TGG + chr5_2:77331787-77331806 Msa0789330:intron 30.0%
GTAATATCTCATGTATGTGT+GGG + chr5_2:77331788-77331807 Msa0789330:intron 30.0%
TCTCAATATCATAGGTTAAC+TGG + chr5_2:77332052-77332071 Msa0789330:intron 30.0%
CTCAATATCATAGGTTAACT+GGG + chr5_2:77332053-77332072 Msa0789330:intron 30.0%
! TTCCTTTTCATCACTTAATG+GGG - chr5_2:77332205-77332224 None:intergenic 30.0%
! GATTCCTTTTCATCACTTAA+TGG - chr5_2:77332207-77332226 None:intergenic 30.0%
TTGAATGCAACTTTGGTATT+TGG - chr5_2:77330175-77330194 None:intergenic 30.0%
TAAACTCTTGAATGCAACTT+TGG - chr5_2:77330182-77330201 None:intergenic 30.0%
! AGAGTTTACTATTTTCCACA+AGG + chr5_2:77330194-77330213 Msa0789330:CDS 30.0%
AAAACGTTGAAGATCATGAA+GGG - chr5_2:77330267-77330286 None:intergenic 30.0%
TATGCTTGCTTACATTAGTA+GGG - chr5_2:77330478-77330497 None:intergenic 30.0%
! AGCATACATTTTACATACCT+CGG + chr5_2:77330492-77330511 Msa0789330:CDS 30.0%
GATATAAAACACGTTTCTCT+TGG - chr5_2:77330630-77330649 None:intergenic 30.0%
! GTTTTCATGAAAAACTCAAC+GGG + chr5_2:77330704-77330723 Msa0789330:CDS 30.0%
TCAACGGGAAAATTATTTGT+TGG + chr5_2:77330719-77330738 Msa0789330:CDS 30.0%
CAACGGGAAAATTATTTGTT+GGG + chr5_2:77330720-77330739 Msa0789330:CDS 30.0%
TCATCTTAACTCTCATTCTA+GGG - chr5_2:77330928-77330947 None:intergenic 30.0%
TTCATCTTAACTCTCATTCT+AGG - chr5_2:77330929-77330948 None:intergenic 30.0%
TGAAGACTGATAAATCTTCA+AGG + chr5_2:77330945-77330964 Msa0789330:CDS 30.0%
TATCTCGTACGTCTAATTTA+TGG + chr5_2:77330996-77331015 Msa0789330:CDS 30.0%
CATTGTGAAGCAAAATAAAC+GGG - chr5_2:77331134-77331153 None:intergenic 30.0%
TATTAGAGCAAGTATGTTAC+TGG + chr5_2:77331276-77331295 Msa0789330:intron 30.0%
ATGCACTATTGTTCAAATGA+GGG - chr5_2:77331719-77331738 None:intergenic 30.0%
AATGCACTATTGTTCAAATG+AGG - chr5_2:77331720-77331739 None:intergenic 30.0%
TGTAATATCTCATGTATGTG+TGG + chr5_2:77331787-77331806 Msa0789330:intron 30.0%
GTAATATCTCATGTATGTGT+GGG + chr5_2:77331788-77331807 Msa0789330:intron 30.0%
TCTCAATATCATAGGTTAAC+TGG + chr5_2:77332052-77332071 Msa0789330:intron 30.0%
CTCAATATCATAGGTTAACT+GGG + chr5_2:77332053-77332072 Msa0789330:intron 30.0%
! TTCCTTTTCATCACTTAATG+GGG - chr5_2:77332205-77332224 None:intergenic 30.0%
! GATTCCTTTTCATCACTTAA+TGG - chr5_2:77332207-77332226 None:intergenic 30.0%
TTAATGTCTGCCAGATTTGA+GGG - chr5_2:77330139-77330158 None:intergenic 35.0%
! AAGGAGAAGCATATTCTAAG+TGG - chr5_2:77330220-77330239 None:intergenic 35.0%
GAAAACGTTGAAGATCATGA+AGG - chr5_2:77330268-77330287 None:intergenic 35.0%
GAGATGATACAGATAGTGAA+AGG - chr5_2:77330293-77330312 None:intergenic 35.0%
! GCATCAACATCATTGGTTAT+TGG - chr5_2:77330377-77330396 None:intergenic 35.0%
!! AGGTAATTGGTTCGTTTACA+AGG + chr5_2:77330444-77330463 Msa0789330:CDS 35.0%
ATGCTTGCTTACATTAGTAG+GGG - chr5_2:77330477-77330496 None:intergenic 35.0%
GTATGCTTGCTTACATTAGT+AGG - chr5_2:77330479-77330498 None:intergenic 35.0%
! ATATTTTCAGCACAAAACCG+AGG - chr5_2:77330512-77330531 None:intergenic 35.0%
! ACGTGTTTTATATCCCTGAA+TGG + chr5_2:77330636-77330655 Msa0789330:CDS 35.0%
TAACAAACGAACTCCATTCA+GGG - chr5_2:77330652-77330671 None:intergenic 35.0%
TTAACAAACGAACTCCATTC+AGG - chr5_2:77330653-77330672 None:intergenic 35.0%
! AATGGAGTTCGTTTGTTAAG+AGG + chr5_2:77330654-77330673 Msa0789330:CDS 35.0%
! AATTATTTGTTGGGATTCGC+AGG + chr5_2:77330729-77330748 Msa0789330:CDS 35.0%
! AAAGAAAGATGAGTTGGAGA+AGG + chr5_2:77330769-77330788 Msa0789330:CDS 35.0%
GAAATTGTTTACTATCCTCG+AGG + chr5_2:77330836-77330855 Msa0789330:CDS 35.0%
! TGATTGGCATGATTTTGTAG+TGG + chr5_2:77330862-77330881 Msa0789330:CDS 35.0%
TAGAGATTGTCCCTTGATAT+GGG - chr5_2:77330973-77330992 None:intergenic 35.0%
TATATTACTTTGTCCCCTAC+AGG + chr5_2:77331228-77331247 Msa0789330:intron 35.0%
CAATAGTGCATTGCAGTTAT+TGG + chr5_2:77331728-77331747 Msa0789330:intron 35.0%
!!! TGCATTGCAGTTATTGGTTT+TGG + chr5_2:77331734-77331753 Msa0789330:intron 35.0%
AAATAAGTTCAACCCACCAT+GGG - chr5_2:77332116-77332135 None:intergenic 35.0%
!!! AGTTTTTTAGTTGAGGGGAA+TGG - chr5_2:77332162-77332181 None:intergenic 35.0%
AGGAATCCCCTTATATGATA+AGG + chr5_2:77332220-77332239 Msa0789330:CDS 35.0%
TTAATGTCTGCCAGATTTGA+GGG - chr5_2:77330139-77330158 None:intergenic 35.0%
! AAGGAGAAGCATATTCTAAG+TGG - chr5_2:77330220-77330239 None:intergenic 35.0%
GAAAACGTTGAAGATCATGA+AGG - chr5_2:77330268-77330287 None:intergenic 35.0%
GAGATGATACAGATAGTGAA+AGG - chr5_2:77330293-77330312 None:intergenic 35.0%
! GCATCAACATCATTGGTTAT+TGG - chr5_2:77330377-77330396 None:intergenic 35.0%
!! AGGTAATTGGTTCGTTTACA+AGG + chr5_2:77330444-77330463 Msa0789330:CDS 35.0%
ATGCTTGCTTACATTAGTAG+GGG - chr5_2:77330477-77330496 None:intergenic 35.0%
GTATGCTTGCTTACATTAGT+AGG - chr5_2:77330479-77330498 None:intergenic 35.0%
! ATATTTTCAGCACAAAACCG+AGG - chr5_2:77330512-77330531 None:intergenic 35.0%
! ACGTGTTTTATATCCCTGAA+TGG + chr5_2:77330636-77330655 Msa0789330:CDS 35.0%
TAACAAACGAACTCCATTCA+GGG - chr5_2:77330652-77330671 None:intergenic 35.0%
TTAACAAACGAACTCCATTC+AGG - chr5_2:77330653-77330672 None:intergenic 35.0%
! AATGGAGTTCGTTTGTTAAG+AGG + chr5_2:77330654-77330673 Msa0789330:CDS 35.0%
! AATTATTTGTTGGGATTCGC+AGG + chr5_2:77330729-77330748 Msa0789330:CDS 35.0%
! AAAGAAAGATGAGTTGGAGA+AGG + chr5_2:77330769-77330788 Msa0789330:CDS 35.0%
GAAATTGTTTACTATCCTCG+AGG + chr5_2:77330836-77330855 Msa0789330:CDS 35.0%
! TGATTGGCATGATTTTGTAG+TGG + chr5_2:77330862-77330881 Msa0789330:CDS 35.0%
TAGAGATTGTCCCTTGATAT+GGG - chr5_2:77330973-77330992 None:intergenic 35.0%
TATATTACTTTGTCCCCTAC+AGG + chr5_2:77331228-77331247 Msa0789330:intron 35.0%
CAATAGTGCATTGCAGTTAT+TGG + chr5_2:77331728-77331747 Msa0789330:intron 35.0%
!!! TGCATTGCAGTTATTGGTTT+TGG + chr5_2:77331734-77331753 Msa0789330:intron 35.0%
AAATAAGTTCAACCCACCAT+GGG - chr5_2:77332116-77332135 None:intergenic 35.0%
!!! AGTTTTTTAGTTGAGGGGAA+TGG - chr5_2:77332162-77332181 None:intergenic 35.0%
AGGAATCCCCTTATATGATA+AGG + chr5_2:77332220-77332239 Msa0789330:CDS 35.0%
GTTAATGTCTGCCAGATTTG+AGG - chr5_2:77330140-77330159 None:intergenic 40.0%
CAAATCTGGCAGACATTAAC+CGG + chr5_2:77330140-77330159 Msa0789330:CDS 40.0%
AAGGGAGTGAATGTAAGCAT+TGG - chr5_2:77330249-77330268 None:intergenic 40.0%
TCATCATCGTCGTTGCAATT+GGG - chr5_2:77330425-77330444 None:intergenic 40.0%
AACGACGATGATGAGGTAAT+TGG + chr5_2:77330431-77330450 Msa0789330:CDS 40.0%
GGAGCAAAAGAAAGATGAGT+TGG + chr5_2:77330763-77330782 Msa0789330:CDS 40.0%
TCTTCAAGGATCCCATATCA+AGG + chr5_2:77330959-77330978 Msa0789330:CDS 40.0%
CTTCAAGGATCCCATATCAA+GGG + chr5_2:77330960-77330979 Msa0789330:CDS 40.0%
GTAGAGATTGTCCCTTGATA+TGG - chr5_2:77330974-77330993 None:intergenic 40.0%
TAATTTATGGCGCATGCTAC+AGG + chr5_2:77331009-77331028 Msa0789330:CDS 40.0%
ATATCTCATGTATGTGTGGG+TGG + chr5_2:77331791-77331810 Msa0789330:intron 40.0%
GAAATAAGTTCAACCCACCA+TGG - chr5_2:77332117-77332136 None:intergenic 40.0%
TGCCCCATTAAGTGATGAAA+AGG + chr5_2:77332200-77332219 Msa0789330:CDS 40.0%
GTTAATGTCTGCCAGATTTG+AGG - chr5_2:77330140-77330159 None:intergenic 40.0%
CAAATCTGGCAGACATTAAC+CGG + chr5_2:77330140-77330159 Msa0789330:CDS 40.0%
AAGGGAGTGAATGTAAGCAT+TGG - chr5_2:77330249-77330268 None:intergenic 40.0%
TCATCATCGTCGTTGCAATT+GGG - chr5_2:77330425-77330444 None:intergenic 40.0%
AACGACGATGATGAGGTAAT+TGG + chr5_2:77330431-77330450 Msa0789330:CDS 40.0%
GGAGCAAAAGAAAGATGAGT+TGG + chr5_2:77330763-77330782 Msa0789330:CDS 40.0%
TCTTCAAGGATCCCATATCA+AGG + chr5_2:77330959-77330978 Msa0789330:CDS 40.0%
CTTCAAGGATCCCATATCAA+GGG + chr5_2:77330960-77330979 Msa0789330:CDS 40.0%
GTAGAGATTGTCCCTTGATA+TGG - chr5_2:77330974-77330993 None:intergenic 40.0%
TAATTTATGGCGCATGCTAC+AGG + chr5_2:77331009-77331028 Msa0789330:CDS 40.0%
ATATCTCATGTATGTGTGGG+TGG + chr5_2:77331791-77331810 Msa0789330:intron 40.0%
GAAATAAGTTCAACCCACCA+TGG - chr5_2:77332117-77332136 None:intergenic 40.0%
TGCCCCATTAAGTGATGAAA+AGG + chr5_2:77332200-77332219 Msa0789330:CDS 40.0%
! GCATATTCTAAGTGGCCTTG+TGG - chr5_2:77330212-77330231 None:intergenic 45.0%
!! ATGTAAGCATTGGAGGAGGA+AGG - chr5_2:77330239-77330258 None:intergenic 45.0%
!! GTGAATGTAAGCATTGGAGG+AGG - chr5_2:77330243-77330262 None:intergenic 45.0%
!! GGAGTGAATGTAAGCATTGG+AGG - chr5_2:77330246-77330265 None:intergenic 45.0%
CACTATCTGTATCATCTCCG+CGG + chr5_2:77330295-77330314 Msa0789330:CDS 45.0%
GACACAGGCATCAACATCAT+TGG - chr5_2:77330384-77330403 None:intergenic 45.0%
TGCAATTGGGAACCTCATGA+GGG - chr5_2:77330412-77330431 None:intergenic 45.0%
TTGCAATTGGGAACCTCATG+AGG - chr5_2:77330413-77330432 None:intergenic 45.0%
CTCATCATCGTCGTTGCAAT+TGG - chr5_2:77330426-77330445 None:intergenic 45.0%
CAATTGCAACGACGATGATG+AGG + chr5_2:77330424-77330443 Msa0789330:CDS 45.0%
GAAAATATCTTCCCTCCGCT+TGG + chr5_2:77330524-77330543 Msa0789330:CDS 45.0%
TGAGAAATCTCCATGCCAAG+CGG - chr5_2:77330542-77330561 None:intergenic 45.0%
AAGAGGAAGAAACTCGACGT+CGG + chr5_2:77330671-77330690 Msa0789330:CDS 45.0%
! TGAGTTGGAGAAGGCAGTAA+TGG + chr5_2:77330778-77330797 Msa0789330:CDS 45.0%
! AGTAATGGAGGCAGTGAAGT+TGG + chr5_2:77330793-77330812 Msa0789330:CDS 45.0%
ACTATCCTCGAGGTGATGAT+TGG + chr5_2:77330846-77330865 Msa0789330:CDS 45.0%
ACTGTGGGACTTATCCTGTA+GGG - chr5_2:77331245-77331264 None:intergenic 45.0%
TACTGTGGGACTTATCCTGT+AGG - chr5_2:77331246-77331265 None:intergenic 45.0%
ATTTCCCTCAAACGTGCATC+AGG + chr5_2:77332132-77332151 Msa0789330:CDS 45.0%
! GCATATTCTAAGTGGCCTTG+TGG - chr5_2:77330212-77330231 None:intergenic 45.0%
!! ATGTAAGCATTGGAGGAGGA+AGG - chr5_2:77330239-77330258 None:intergenic 45.0%
!! GTGAATGTAAGCATTGGAGG+AGG - chr5_2:77330243-77330262 None:intergenic 45.0%
!! GGAGTGAATGTAAGCATTGG+AGG - chr5_2:77330246-77330265 None:intergenic 45.0%
CACTATCTGTATCATCTCCG+CGG + chr5_2:77330295-77330314 Msa0789330:CDS 45.0%
GACACAGGCATCAACATCAT+TGG - chr5_2:77330384-77330403 None:intergenic 45.0%
TGCAATTGGGAACCTCATGA+GGG - chr5_2:77330412-77330431 None:intergenic 45.0%
TTGCAATTGGGAACCTCATG+AGG - chr5_2:77330413-77330432 None:intergenic 45.0%
CTCATCATCGTCGTTGCAAT+TGG - chr5_2:77330426-77330445 None:intergenic 45.0%
CAATTGCAACGACGATGATG+AGG + chr5_2:77330424-77330443 Msa0789330:CDS 45.0%
GAAAATATCTTCCCTCCGCT+TGG + chr5_2:77330524-77330543 Msa0789330:CDS 45.0%
TGAGAAATCTCCATGCCAAG+CGG - chr5_2:77330542-77330561 None:intergenic 45.0%
AAGAGGAAGAAACTCGACGT+CGG + chr5_2:77330671-77330690 Msa0789330:CDS 45.0%
! TGAGTTGGAGAAGGCAGTAA+TGG + chr5_2:77330778-77330797 Msa0789330:CDS 45.0%
! AGTAATGGAGGCAGTGAAGT+TGG + chr5_2:77330793-77330812 Msa0789330:CDS 45.0%
ACTATCCTCGAGGTGATGAT+TGG + chr5_2:77330846-77330865 Msa0789330:CDS 45.0%
ACTGTGGGACTTATCCTGTA+GGG - chr5_2:77331245-77331264 None:intergenic 45.0%
TACTGTGGGACTTATCCTGT+AGG - chr5_2:77331246-77331265 None:intergenic 45.0%
ATTTCCCTCAAACGTGCATC+AGG + chr5_2:77332132-77332151 Msa0789330:CDS 45.0%
ATTTGAGGGTGGACATGCGA+TGG - chr5_2:77330125-77330144 None:intergenic 50.0%
ATGTCTGCCAGATTTGAGGG+TGG - chr5_2:77330136-77330155 None:intergenic 50.0%
TGGTATTTGGACAGCAGTGC+CGG - chr5_2:77330162-77330181 None:intergenic 50.0%
GACCTCATCAGTGTGAGGAT+CGG - chr5_2:77330333-77330352 None:intergenic 50.0%
AAATCTCCATGCCAAGCGGA+GGG - chr5_2:77330538-77330557 None:intergenic 50.0%
CTGACGTTCATGGTGAAGTC+TGG + chr5_2:77330576-77330595 Msa0789330:CDS 50.0%
AAGTTTCACCATGCCTGCCA+CGG + chr5_2:77330599-77330618 Msa0789330:CDS 50.0%
! ATCTTTCTTTTGCTCCGCCG+CGG - chr5_2:77330759-77330778 None:intergenic 50.0%
GTTGGAGAAGGCAGTAATGG+AGG + chr5_2:77330781-77330800 Msa0789330:CDS 50.0%
TCATGCCAATCATCACCTCG+AGG - chr5_2:77330854-77330873 None:intergenic 50.0%
CTGTGGGACTTATCCTGTAG+GGG - chr5_2:77331244-77331263 None:intergenic 50.0%
CTCATGTATGTGTGGGTGGA+TGG + chr5_2:77331795-77331814 Msa0789330:intron 50.0%
TGTATGTGTGGGTGGATGGA+TGG + chr5_2:77331799-77331818 Msa0789330:intron 50.0%
TTCCAAGAAGAGTCAGCCCA+TGG + chr5_2:77332097-77332116 Msa0789330:CDS 50.0%
AAGAAGAGTCAGCCCATGGT+GGG + chr5_2:77332101-77332120 Msa0789330:CDS 50.0%
TCGACCTGATGCACGTTTGA+GGG - chr5_2:77332139-77332158 None:intergenic 50.0%
ATTTGAGGGTGGACATGCGA+TGG - chr5_2:77330125-77330144 None:intergenic 50.0%
ATGTCTGCCAGATTTGAGGG+TGG - chr5_2:77330136-77330155 None:intergenic 50.0%
TGGTATTTGGACAGCAGTGC+CGG - chr5_2:77330162-77330181 None:intergenic 50.0%
GACCTCATCAGTGTGAGGAT+CGG - chr5_2:77330333-77330352 None:intergenic 50.0%
AAATCTCCATGCCAAGCGGA+GGG - chr5_2:77330538-77330557 None:intergenic 50.0%
CTGACGTTCATGGTGAAGTC+TGG + chr5_2:77330576-77330595 Msa0789330:CDS 50.0%
AAGTTTCACCATGCCTGCCA+CGG + chr5_2:77330599-77330618 Msa0789330:CDS 50.0%
! ATCTTTCTTTTGCTCCGCCG+CGG - chr5_2:77330759-77330778 None:intergenic 50.0%
GTTGGAGAAGGCAGTAATGG+AGG + chr5_2:77330781-77330800 Msa0789330:CDS 50.0%
TCATGCCAATCATCACCTCG+AGG - chr5_2:77330854-77330873 None:intergenic 50.0%
CTGTGGGACTTATCCTGTAG+GGG - chr5_2:77331244-77331263 None:intergenic 50.0%
CTCATGTATGTGTGGGTGGA+TGG + chr5_2:77331795-77331814 Msa0789330:intron 50.0%
TGTATGTGTGGGTGGATGGA+TGG + chr5_2:77331799-77331818 Msa0789330:intron 50.0%
TTCCAAGAAGAGTCAGCCCA+TGG + chr5_2:77332097-77332116 Msa0789330:CDS 50.0%
AAGAAGAGTCAGCCCATGGT+GGG + chr5_2:77332101-77332120 Msa0789330:CDS 50.0%
TCGACCTGATGCACGTTTGA+GGG - chr5_2:77332139-77332158 None:intergenic 50.0%
ATGGTTGCTGCTGTTGGTGC+TGG - chr5_2:77330106-77330125 None:intergenic 55.0%
CATGCGATGGTTGCTGCTGT+TGG - chr5_2:77330112-77330131 None:intergenic 55.0%
CGCATGTCCACCCTCAAATC+TGG + chr5_2:77330126-77330145 Msa0789330:CDS 55.0%
GCGAAGACCTCATCAGTGTG+AGG - chr5_2:77330338-77330357 None:intergenic 55.0%
CTCATGAGGGTCTTGGACAC+AGG - chr5_2:77330399-77330418 None:intergenic 55.0%
CTGTGTCCAAGACCCTCATG+AGG + chr5_2:77330397-77330416 Msa0789330:CDS 55.0%
TGGGAACCTCATGAGGGTCT+TGG - chr5_2:77330406-77330425 None:intergenic 55.0%
TATCTTCCCTCCGCTTGGCA+TGG + chr5_2:77330529-77330548 Msa0789330:CDS 55.0%
GAAATCTCCATGCCAAGCGG+AGG - chr5_2:77330539-77330558 None:intergenic 55.0%
CATGAACGTCAGTGACGAGG+AGG - chr5_2:77330568-77330587 None:intergenic 55.0%
CTCCTCGTCACTGACGTTCA+TGG + chr5_2:77330566-77330585 Msa0789330:CDS 55.0%
CACCATGAACGTCAGTGACG+AGG - chr5_2:77330571-77330590 None:intergenic 55.0%
AGTTTCACCATGCCTGCCAC+GGG + chr5_2:77330600-77330619 Msa0789330:CDS 55.0%
CGTTTCTCTTGGCAAACCCG+TGG - chr5_2:77330619-77330638 None:intergenic 55.0%
! CACCATGGGCTGACTCTTCT+TGG - chr5_2:77332102-77332121 None:intergenic 55.0%
CAAGAAGAGTCAGCCCATGG+TGG + chr5_2:77332100-77332119 Msa0789330:CDS 55.0%
GTCGACCTGATGCACGTTTG+AGG - chr5_2:77332140-77332159 None:intergenic 55.0%
ATGGTTGCTGCTGTTGGTGC+TGG - chr5_2:77330106-77330125 None:intergenic 55.0%
CATGCGATGGTTGCTGCTGT+TGG - chr5_2:77330112-77330131 None:intergenic 55.0%
CGCATGTCCACCCTCAAATC+TGG + chr5_2:77330126-77330145 Msa0789330:CDS 55.0%
GCGAAGACCTCATCAGTGTG+AGG - chr5_2:77330338-77330357 None:intergenic 55.0%
CTCATGAGGGTCTTGGACAC+AGG - chr5_2:77330399-77330418 None:intergenic 55.0%
CTGTGTCCAAGACCCTCATG+AGG + chr5_2:77330397-77330416 Msa0789330:CDS 55.0%
TGGGAACCTCATGAGGGTCT+TGG - chr5_2:77330406-77330425 None:intergenic 55.0%
TATCTTCCCTCCGCTTGGCA+TGG + chr5_2:77330529-77330548 Msa0789330:CDS 55.0%
GAAATCTCCATGCCAAGCGG+AGG - chr5_2:77330539-77330558 None:intergenic 55.0%
CATGAACGTCAGTGACGAGG+AGG - chr5_2:77330568-77330587 None:intergenic 55.0%
CTCCTCGTCACTGACGTTCA+TGG + chr5_2:77330566-77330585 Msa0789330:CDS 55.0%
CACCATGAACGTCAGTGACG+AGG - chr5_2:77330571-77330590 None:intergenic 55.0%
AGTTTCACCATGCCTGCCAC+GGG + chr5_2:77330600-77330619 Msa0789330:CDS 55.0%
CGTTTCTCTTGGCAAACCCG+TGG - chr5_2:77330619-77330638 None:intergenic 55.0%
! CACCATGGGCTGACTCTTCT+TGG - chr5_2:77332102-77332121 None:intergenic 55.0%
CAAGAAGAGTCAGCCCATGG+TGG + chr5_2:77332100-77332119 Msa0789330:CDS 55.0%
GTCGACCTGATGCACGTTTG+AGG - chr5_2:77332140-77332159 None:intergenic 55.0%
ATCGGCGAGGAGATCAACCG+CGG - chr5_2:77330315-77330334 None:intergenic 60.0%
CATCAGTGTGAGGATCGGCG+AGG - chr5_2:77330328-77330347 None:intergenic 60.0%
CGCCGATCCTCACACTGATG+AGG + chr5_2:77330328-77330347 Msa0789330:CDS 60.0%
TCTCTTGGCAAACCCGTGGC+AGG - chr5_2:77330615-77330634 None:intergenic 60.0%
TGGGATTCGCAGGAAAGCCG+CGG + chr5_2:77330739-77330758 Msa0789330:CDS 60.0%
GGAGGCAGTGAAGTTGGCAG+AGG + chr5_2:77330799-77330818 Msa0789330:CDS 60.0%
ATCGGCGAGGAGATCAACCG+CGG - chr5_2:77330315-77330334 None:intergenic 60.0%
CATCAGTGTGAGGATCGGCG+AGG - chr5_2:77330328-77330347 None:intergenic 60.0%
CGCCGATCCTCACACTGATG+AGG + chr5_2:77330328-77330347 Msa0789330:CDS 60.0%
TCTCTTGGCAAACCCGTGGC+AGG - chr5_2:77330615-77330634 None:intergenic 60.0%
TGGGATTCGCAGGAAAGCCG+CGG + chr5_2:77330739-77330758 Msa0789330:CDS 60.0%
GGAGGCAGTGAAGTTGGCAG+AGG + chr5_2:77330799-77330818 Msa0789330:CDS 60.0%
!! GCTGCTGTTGGTGCTGGTGC+TGG - chr5_2:77330100-77330119 None:intergenic 65.0%
TGGCAAACCCGTGGCAGGCA+TGG - chr5_2:77330610-77330629 None:intergenic 65.0%
GATTCGCAGGAAAGCCGCGG+CGG + chr5_2:77330742-77330761 Msa0789330:CDS 65.0%
!! GCTGCTGTTGGTGCTGGTGC+TGG - chr5_2:77330100-77330119 None:intergenic 65.0%
TGGCAAACCCGTGGCAGGCA+TGG - chr5_2:77330610-77330629 None:intergenic 65.0%
GATTCGCAGGAAAGCCGCGG+CGG + chr5_2:77330742-77330761 Msa0789330:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 77330086 77332251 77330086 ID=Msa0789330;Name=Msa0789330
chr5_2 mRNA 77330086 77332251 77330086 ID=Msa0789330-mRNA-1;Parent=Msa0789330;Name=Msa0789330-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|0|0|1|1|1|2|0|376
chr5_2 exon 77330086 77331030 77330086 ID=Msa0789330-mRNA-1:exon:23497;Parent=Msa0789330-mRNA-1
chr5_2 exon 77332066 77332251 77332066 ID=Msa0789330-mRNA-1:exon:23498;Parent=Msa0789330-mRNA-1
chr5_2 CDS 77330086 77331030 77330086 ID=Msa0789330-mRNA-1:cds;Parent=Msa0789330-mRNA-1
chr5_2 CDS 77332066 77332251 77332066 ID=Msa0789330-mRNA-1:cds;Parent=Msa0789330-mRNA-1
Gene Sequence

>Msa0789330

ATGTCTCTCAACCAGCACCAGCACCAACAGCAGCAACCATCGCATGTCCACCCTCAAATCTGGCAGACATTAACCGGCACTGCTGTCCAAATACCAAAGTTGCATTCAAGAGTTTACTATTTTCCACAAGGCCACTTAGAATATGCTTCTCCTTCCTCCTCCAATGCTTACATTCACTCCCTTCATGATCTTCAACGTTTTCGTCCTTTCACTATCTGTATCATCTCCGCGGTTGATCTCCTCGCCGATCCTCACACTGATGAGGTCTTCGCTAAACTGCTACTCACTCCAATAACCAATGATGTTGATGCCTGTGTCCAAGACCCTCATGAGGTTCCCAATTGCAACGACGATGATGAGGTAATTGGTTCGTTTACAAGGACTCTCGCCCCTACTAATGTAAGCAAGCATACATTTTACATACCTCGGTTTTGTGCTGAAAATATCTTCCCTCCGCTTGGCATGGAGATTTCTCAAAACCTCCTCGTCACTGACGTTCATGGTGAAGTCTGGAAGTTTCACCATGCCTGCCACGGGTTTGCCAAGAGAAACGTGTTTTATATCCCTGAATGGAGTTCGTTTGTTAAGAGGAAGAAACTCGACGTCGGAGATGCTGTTGTTTTCATGAAAAACTCAACGGGAAAATTATTTGTTGGGATTCGCAGGAAAGCCGCGGCGGAGCAAAAGAAAGATGAGTTGGAGAAGGCAGTAATGGAGGCAGTGAAGTTGGCAGAGGAGAACAAGCCATTTGAAATTGTTTACTATCCTCGAGGTGATGATTGGCATGATTTTGTAGTGGATGCTAATATTGTTGATGAATCAATGAAAATTCAATGGAACCCTAGAATGAGAGTTAAGATGAAGACTGATAAATCTTCAAGGATCCCATATCAAGGGACAATCTCTACTGTATCTCGTACGTCTAATTTATGGCGCATGCTACAGGTTAACTGGGATGAATTTCAAGTCTCACAAATTCCAAGAAGAGTCAGCCCATGGTGGGTTGAACTTATTTCCCTCAAACGTGCATCAGGTCGACCATTCCCCTCAACTAAAAAACTTAGAACTGTTCAAAGTTCTGCCCCATTAAGTGATGAAAAGGAATCCCCTTATATGATAAGGTTTTTGTAA
Protein sequence

>Msa0789330

MSLNQHQHQQQQPSHVHPQIWQTLTGTAVQIPKLHSRVYYFPQGHLEYASPSSSNAYIHSLHDLQRFRPFTICIISAVDLLADPHTDEVFAKLLLTPITNDVDACVQDPHEVPNCNDDDEVIGSFTRTLAPTNVSKHTFYIPRFCAENIFPPLGMEISQNLLVTDVHGEVWKFHHACHGFAKRNVFYIPEWSSFVKRKKLDVGDAVVFMKNSTGKLFVGIRRKAAAEQKKDELEKAVMEAVKLAEENKPFEIVYYPRGDDWHDFVVDANIVDESMKIQWNPRMRVKMKTDKSSRIPYQGTISTVSRTSNLWRMLQVNWDEFQVSQIPRRVSPWWVELISLKRASGRPFPSTKKLRTVQSSAPLSDEKESPYMIRFL*