AlfalfaGEDB | Msa0789330

M. sativa cultivar zhongmu-4 / Msa0789330

KEGG: -
GO: GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0789330	sp\|Q84WU6\|ARFQ_ARATH	36.203	395	191	11	15	358	15	399	2.26e-69	231

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0789330	G7INQ9	85.829	374	42	5	1	369	1	368	0.0	637

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TFs/TRs:

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Gene ID	Type	Classification
Msa0789330	TF	B3-ARF

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0789330	MtrunA17_Chr2g0277531	89.097	321	27	4	1	316	1	318	0.0	571
Msa0789330	MtrunA17_Chr2g0277461	72.973	370	85	8	10	369	4	368	0.0	522
Msa0789330	MtrunA17_Chr5g0424931	47.291	406	161	13	13	375	13	408	6.52e-101	308
Msa0789330	MtrunA17_Chr1g0178011	46.361	371	173	11	12	365	5	366	1.93e-96	295
Msa0789330	MtrunA17_Chr5g0417281	44.385	374	190	9	10	372	2	368	3.30e-96	296
Msa0789330	MtrunA17_Chr5g0436761	45.333	375	185	11	11	372	4	371	7.94e-87	270
Msa0789330	MtrunA17_Chr2g0289221	48.276	319	141	11	12	316	13	321	6.92e-84	259
Msa0789330	MtrunA17_Chr3g0115271	39.855	414	183	13	14	373	14	415	1.89e-82	263
Msa0789330	MtrunA17_Chr5g0424801	41.081	370	183	13	13	362	6	360	5.00e-82	255
Msa0789330	MtrunA17_Chr5g0424741	41.063	414	177	13	12	363	5	413	8.37e-81	256

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0789330	AT1G77850.2	36.203	395	191	11	15	358	15	399	2.17e-70	231
Msa0789330	AT1G77850.1	36.203	395	191	11	15	358	15	399	2.30e-70	231
Msa0789330	AT4G30080.1	35.263	380	181	10	16	339	16	386	1.81e-61	209
Msa0789330	AT2G28350.2	33.735	415	196	15	11	358	2	404	1.48e-57	199
Msa0789330	AT2G28350.1	33.735	415	196	15	11	358	2	404	2.05e-57	199
Msa0789330	AT4G23980.2	31.378	341	209	9	15	336	8	342	1.07e-44	163
Msa0789330	AT4G23980.1	31.378	341	209	9	15	336	8	342	1.45e-44	163
Msa0789330	AT1G34390.1	32.153	367	210	13	14	357	22	372	2.96e-43	159
Msa0789330	AT1G35540.1	32.514	366	212	13	14	357	22	374	4.41e-43	158
Msa0789330	AT1G34310.1	32.362	343	200	11	14	336	22	352	1.09e-42	157

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Find 100 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGTTGAAGATCATGAA+GGG	0.620045	5_2:-77330264	None:intergenic
AAAGAAAGATGAGTTGGAGA+AGG	0.605720	5_2:+77330769	Msa0789330:CDS
AAATAAGTTCAACCCACCAT+GGG	0.611317	5_2:-77332113	None:intergenic
AAATCTCCATGCCAAGCGGA+GGG	0.609417	5_2:-77330535	None:intergenic
AACGACGATGATGAGGTAAT+TGG	0.328138	5_2:+77330431	Msa0789330:CDS
AAGAAGAGTCAGCCCATGGT+GGG	0.617483	5_2:+77332101	Msa0789330:CDS
AAGAGGAAGAAACTCGACGT+CGG	0.718798	5_2:+77330671	Msa0789330:CDS
AAGGAGAAGCATATTCTAAG+TGG	0.626940	5_2:-77330217	None:intergenic
AAGGGAGTGAATGTAAGCAT+TGG	0.561164	5_2:-77330246	None:intergenic
AAGTTTCACCATGCCTGCCA+CGG	0.506565	5_2:+77330599	Msa0789330:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGAATGCAACTTTGGTATT+TGG	-	chr5_2:77330175-77330194	None:intergenic	30.0%
TAAACTCTTGAATGCAACTT+TGG	-	chr5_2:77330182-77330201	None:intergenic	30.0%
AAAACGTTGAAGATCATGAA+GGG	-	chr5_2:77330267-77330286	None:intergenic	30.0%
TATGCTTGCTTACATTAGTA+GGG	-	chr5_2:77330478-77330497	None:intergenic	30.0%
GATATAAAACACGTTTCTCT+TGG	-	chr5_2:77330630-77330649	None:intergenic	30.0%
TCAACGGGAAAATTATTTGT+TGG	+	chr5_2:77330719-77330738	Msa0789330:CDS	30.0%
CAACGGGAAAATTATTTGTT+GGG	+	chr5_2:77330720-77330739	Msa0789330:CDS	30.0%
TCATCTTAACTCTCATTCTA+GGG	-	chr5_2:77330928-77330947	None:intergenic	30.0%
TTCATCTTAACTCTCATTCT+AGG	-	chr5_2:77330929-77330948	None:intergenic	30.0%
TGAAGACTGATAAATCTTCA+AGG	+	chr5_2:77330945-77330964	Msa0789330:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	77330086	77332251	77330086	ID=Msa0789330;Name=Msa0789330
chr5_2	mRNA	77330086	77332251	77330086	ID=Msa0789330-mRNA-1;Parent=Msa0789330;Name=Msa0789330-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|0\|0\|1\|1\|1\|2\|0\|376
chr5_2	exon	77330086	77331030	77330086	ID=Msa0789330-mRNA-1:exon:23497;Parent=Msa0789330-mRNA-1
chr5_2	exon	77332066	77332251	77332066	ID=Msa0789330-mRNA-1:exon:23498;Parent=Msa0789330-mRNA-1
chr5_2	CDS	77330086	77331030	77330086	ID=Msa0789330-mRNA-1:cds;Parent=Msa0789330-mRNA-1
chr5_2	CDS	77332066	77332251	77332066	ID=Msa0789330-mRNA-1:cds;Parent=Msa0789330-mRNA-1

Gene Sequence

>Msa0789330

ATGTCTCTCAACCAGCACCAGCACCAACAGCAGCAACCATCGCATGTCCACCCTCAAATCTGGCAGACATTAACCGGCACTGCTGTCCAAATACCAAAGTTGCATTCAAGAGTTTACTATTTTCCACAAGGCCACTTAGAATATGCTTCTCCTTCCTCCTCCAATGCTTACATTCACTCCCTTCATGATCTTCAACGTTTTCGTCCTTTCACTATCTGTATCATCTCCGCGGTTGATCTCCTCGCCGATCCTCACACTGATGAGGTCTTCGCTAAACTGCTACTCACTCCAATAACCAATGATGTTGATGCCTGTGTCCAAGACCCTCATGAGGTTCCCAATTGCAACGACGATGATGAGGTAATTGGTTCGTTTACAAGGACTCTCGCCCCTACTAATGTAAGCAAGCATACATTTTACATACCTCGGTTTTGTGCTGAAAATATCTTCCCTCCGCTTGGCATGGAGATTTCTCAAAACCTCCTCGTCACTGACGTTCATGGTGAAGTCTGGAAGTTTCACCATGCCTGCCACGGGTTTGCCAAGAGAAACGTGTTTTATATCCCTGAATGGAGTTCGTTTGTTAAGAGGAAGAAACTCGACGTCGGAGATGCTGTTGTTTTCATGAAAAACTCAACGGGAAAATTATTTGTTGGGATTCGCAGGAAAGCCGCGGCGGAGCAAAAGAAAGATGAGTTGGAGAAGGCAGTAATGGAGGCAGTGAAGTTGGCAGAGGAGAACAAGCCATTTGAAATTGTTTACTATCCTCGAGGTGATGATTGGCATGATTTTGTAGTGGATGCTAATATTGTTGATGAATCAATGAAAATTCAATGGAACCCTAGAATGAGAGTTAAGATGAAGACTGATAAATCTTCAAGGATCCCATATCAAGGGACAATCTCTACTGTATCTCGTACGTCTAATTTATGGCGCATGCTACAGGTTAACTGGGATGAATTTCAAGTCTCACAAATTCCAAGAAGAGTCAGCCCATGGTGGGTTGAACTTATTTCCCTCAAACGTGCATCAGGTCGACCATTCCCCTCAACTAAAAAACTTAGAACTGTTCAAAGTTCTGCCCCATTAAGTGATGAAAAGGAATCCCCTTATATGATAAGGTTTTTGTAA

Protein sequence

>Msa0789330

MSLNQHQHQQQQPSHVHPQIWQTLTGTAVQIPKLHSRVYYFPQGHLEYASPSSSNAYIHSLHDLQRFRPFTICIISAVDLLADPHTDEVFAKLLLTPITNDVDACVQDPHEVPNCNDDDEVIGSFTRTLAPTNVSKHTFYIPRFCAENIFPPLGMEISQNLLVTDVHGEVWKFHHACHGFAKRNVFYIPEWSSFVKRKKLDVGDAVVFMKNSTGKLFVGIRRKAAAEQKKDELEKAVMEAVKLAEENKPFEIVYYPRGDDWHDFVVDANIVDESMKIQWNPRMRVKMKTDKSSRIPYQGTISTVSRTSNLWRMLQVNWDEFQVSQIPRRVSPWWVELISLKRASGRPFPSTKKLRTVQSSAPLSDEKESPYMIRFL*