Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789600 | XP_039688775.1 | 66.337 | 202 | 43 | 2 | 42 | 218 | 1 | 202 | 4.25e-85 | 267 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789600 | sp|Q9SWG3|FAR1_ARATH | 35.023 | 217 | 104 | 6 | 39 | 218 | 1 | 217 | 8.35e-28 | 114 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789600 | A0A2K3NBU0 | 65.816 | 196 | 45 | 1 | 45 | 218 | 3 | 198 | 3.42e-79 | 260 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0789600 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789600 | MtrunA17_Chr1g0207551 | 36.364 | 165 | 81 | 2 | 78 | 218 | 33 | 197 | 4.35e-26 | 105 |
| Msa0789600 | MtrunA17_Chr2g0329031 | 33.523 | 176 | 86 | 4 | 67 | 218 | 2 | 170 | 7.23e-22 | 93.2 |
| Msa0789600 | MtrunA17_Chr5g0448761 | 30.233 | 172 | 89 | 4 | 78 | 218 | 59 | 230 | 3.39e-18 | 82.8 |
| Msa0789600 | MtrunA17_Chr3g0080351 | 28.333 | 180 | 67 | 4 | 78 | 218 | 75 | 231 | 3.61e-17 | 79.7 |
| Msa0789600 | MtrunA17_Chr6g0451441 | 28.500 | 200 | 121 | 5 | 40 | 218 | 49 | 247 | 3.58e-14 | 70.9 |
| Msa0789600 | MtrunA17_Chr2g0287651 | 24.468 | 188 | 112 | 4 | 58 | 215 | 53 | 240 | 1.04e-13 | 69.7 |
| Msa0789600 | MtrunA17_Chr7g0258861 | 26.220 | 164 | 94 | 3 | 78 | 214 | 9 | 172 | 1.98e-12 | 65.1 |
| Msa0789600 | MtrunA17_Chr5g0440451 | 28.571 | 133 | 76 | 3 | 39 | 154 | 1 | 131 | 7.19e-12 | 64.3 |
| Msa0789600 | MtrunA17_Chr7g0233911 | 33.793 | 145 | 62 | 6 | 49 | 162 | 2 | 143 | 1.97e-11 | 61.2 |
| Msa0789600 | MtrunA17_Chr2g0324011 | 26.627 | 169 | 94 | 5 | 78 | 218 | 9 | 175 | 2.43e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789600 | AT4G15090.1 | 35.023 | 217 | 104 | 6 | 39 | 218 | 1 | 217 | 8.49e-29 | 114 |
| Msa0789600 | AT4G15090.5 | 35.023 | 217 | 104 | 6 | 39 | 218 | 1 | 217 | 8.49e-29 | 114 |
| Msa0789600 | AT4G15090.3 | 35.023 | 217 | 104 | 6 | 39 | 218 | 1 | 217 | 8.49e-29 | 114 |
| Msa0789600 | AT4G15090.2 | 35.023 | 217 | 104 | 6 | 39 | 218 | 1 | 217 | 8.49e-29 | 114 |
| Msa0789600 | AT4G15090.4 | 35.023 | 217 | 104 | 6 | 39 | 218 | 1 | 217 | 8.49e-29 | 114 |
| Msa0789600 | AT4G38180.1 | 31.148 | 183 | 94 | 4 | 66 | 218 | 62 | 242 | 2.16e-21 | 92.4 |
| Msa0789600 | AT3G22170.2 | 27.273 | 242 | 101 | 7 | 30 | 218 | 7 | 226 | 1.13e-19 | 87.4 |
| Msa0789600 | AT3G22170.1 | 27.273 | 242 | 101 | 7 | 30 | 218 | 7 | 226 | 1.13e-19 | 87.4 |
| Msa0789600 | AT1G76320.2 | 31.875 | 160 | 79 | 4 | 83 | 218 | 1 | 154 | 1.16e-16 | 78.6 |
| Msa0789600 | AT1G76320.1 | 31.875 | 160 | 79 | 4 | 83 | 218 | 1 | 154 | 1.21e-16 | 78.6 |
| Msa0789600 | AT1G76320.4 | 31.875 | 160 | 79 | 4 | 83 | 218 | 1 | 154 | 1.21e-16 | 78.6 |
| Msa0789600 | AT1G76320.3 | 31.875 | 160 | 79 | 4 | 83 | 218 | 1 | 154 | 1.70e-16 | 78.2 |
| Msa0789600 | AT2G32250.5 | 37.500 | 112 | 45 | 3 | 82 | 170 | 41 | 150 | 6.23e-14 | 70.5 |
| Msa0789600 | AT2G32250.2 | 37.500 | 112 | 45 | 3 | 82 | 170 | 41 | 150 | 6.61e-14 | 70.5 |
| Msa0789600 | AT2G32250.4 | 37.500 | 112 | 45 | 3 | 82 | 170 | 41 | 150 | 6.61e-14 | 70.5 |
| Msa0789600 | AT2G32250.6 | 37.500 | 112 | 45 | 3 | 82 | 170 | 41 | 150 | 6.80e-14 | 70.5 |
| Msa0789600 | AT2G32250.1 | 37.500 | 112 | 45 | 3 | 82 | 170 | 41 | 150 | 6.80e-14 | 70.5 |
| Msa0789600 | AT2G32250.3 | 37.500 | 112 | 45 | 3 | 82 | 170 | 41 | 150 | 6.80e-14 | 70.5 |
| Msa0789600 | AT2G32250.8 | 36.937 | 111 | 45 | 3 | 83 | 170 | 1 | 109 | 5.13e-13 | 67.8 |
| Msa0789600 | AT2G32250.7 | 36.937 | 111 | 45 | 3 | 83 | 170 | 1 | 109 | 5.23e-13 | 67.8 |
Find 38 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGAAATATAGGAATTAA+TGG | 0.248279 | 5_2:-78915902 | Msa0789600:intron |
| CACTCTGCTATCATTCTTAA+AGG | 0.277937 | 5_2:-78916170 | Msa0789600:CDS |
| TTCATATCCTCCATATTGTT+TGG | 0.293868 | 5_2:+78915354 | None:intergenic |
| AAATCTGCGTCGTTGTTTAA+AGG | 0.297168 | 5_2:-78915584 | Msa0789600:CDS |
| GCCACTCTGGCCAAACAATA+TGG | 0.314518 | 5_2:-78915364 | Msa0789600:CDS |
| TCAAATTTCATTCCAATGTA+TGG | 0.346422 | 5_2:+78915772 | None:intergenic |
| GAGTAAAGTGTAATGAAAAT+TGG | 0.367197 | 5_2:-78916272 | None:intergenic |
| ATCAGAAATCATTTAGATAT+AGG | 0.417224 | 5_2:-78915307 | Msa0789600:CDS |
| CATTATTTCCTTTGCCATAG+AGG | 0.426978 | 5_2:-78915457 | Msa0789600:CDS |
| GAATTAATGGAAGTTGTTGA+TGG | 0.448629 | 5_2:-78915889 | Msa0789600:CDS |
| AATGATGACAATGTTATTGA+TGG | 0.455364 | 5_2:-78915865 | Msa0789600:CDS |
| AGGAAATAATGTGCATATGC+TGG | 0.467902 | 5_2:+78915469 | None:intergenic |
| AGCGTGTGTTGAAGGGAGTT+TGG | 0.475218 | 5_2:+78916232 | None:intergenic |
| TGCTATCATTCTTAAAGGTA+TGG | 0.477048 | 5_2:-78916165 | Msa0789600:intron |
| TGTGTGTGAGCGTGTGTTGA+AGG | 0.481794 | 5_2:+78916224 | None:intergenic |
| ACTTATGCTCGCACAAGATA+CGG | 0.484780 | 5_2:-78915631 | Msa0789600:CDS |
| AGAATGATTCATGTACGGTT+GGG | 0.505397 | 5_2:-78915810 | Msa0789600:CDS |
| GTGTGTGAGCGTGTGTTGAA+GGG | 0.519552 | 5_2:+78916225 | None:intergenic |
| TATTGATTCCTCTATGGCAA+AGG | 0.524300 | 5_2:+78915449 | None:intergenic |
| ACTACTGTAACATAAATCTT+CGG | 0.535461 | 5_2:+78916194 | None:intergenic |
| CTTATGCTCGCACAAGATAC+GGG | 0.542745 | 5_2:-78915630 | Msa0789600:CDS |
| AATTAATGGAAGTTGTTGAT+GGG | 0.547188 | 5_2:-78915888 | Msa0789600:CDS |
| ATTGAAACTATGCAAGATGT+TGG | 0.548761 | 5_2:-78915409 | Msa0789600:CDS |
| TCCATATTGTTTGGCCAGAG+TGG | 0.548986 | 5_2:+78915363 | None:intergenic |
| GAGAATGATTCATGTACGGT+TGG | 0.560679 | 5_2:-78915811 | Msa0789600:CDS |
| CTAATGAAAGAGCCATACAT+TGG | 0.562140 | 5_2:-78915784 | Msa0789600:CDS |
| AAGCAAAATTTATGCCACTC+TGG | 0.565072 | 5_2:-78915377 | Msa0789600:CDS |
| TCTGCGTCGTTGTTTAAAGG+TGG | 0.568390 | 5_2:-78915581 | Msa0789600:CDS |
| TTGTTTAAAGGTGGAATGTG+AGG | 0.581351 | 5_2:-78915572 | Msa0789600:CDS |
| TATGGAGGATATGAAAACAT+TGG | 0.602190 | 5_2:-78915346 | Msa0789600:CDS |
| TGTTGAGAATGATTCATGTA+CGG | 0.602674 | 5_2:-78915815 | Msa0789600:CDS |
| ATGATTCATGTACGGTTGGG+AGG | 0.609038 | 5_2:-78915807 | Msa0789600:CDS |
| GAAATCATTTAGATATAGGT+CGG | 0.612130 | 5_2:-78915303 | Msa0789600:CDS |
| GCACAAGATACGGGAAGACG+CGG | 0.628660 | 5_2:-78915621 | Msa0789600:CDS |
| ATGATGACAATGTTATTGAT+GGG | 0.630031 | 5_2:-78915864 | Msa0789600:CDS |
| ACTGTAACATAAATCTTCGG+TGG | 0.635445 | 5_2:+78916197 | None:intergenic |
| CACAAGATACGGGAAGACGC+GGG | 0.645645 | 5_2:-78915620 | Msa0789600:CDS |
| ACTCTGGCCAAACAATATGG+AGG | 0.695583 | 5_2:-78915361 | Msa0789600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGGTAAATATTACTATAAAA+TGG | - | chr5_2:78915412-78915431 | Msa0789600:CDS | 15.0% |
| !!! | CTTATTTTTTTAGAAAAAGT+TGG | + | chr5_2:78915556-78915575 | None:intergenic | 15.0% |
| !!! | GTTTTAATCTTTATTTTACT+CGG | - | chr5_2:78915575-78915594 | Msa0789600:CDS | 15.0% |
| !!! | ACAGTTATAATTTGAAATAT+AGG | - | chr5_2:78915646-78915665 | Msa0789600:intron | 15.0% |
| !!! | ATTTGAAATATAGGAATTAA+TGG | - | chr5_2:78915655-78915674 | Msa0789600:intron | 15.0% |
| !! | TGGTAAATATTACTATAAAA+TGG | - | chr5_2:78915412-78915431 | Msa0789600:CDS | 15.0% |
| !!! | CTTATTTTTTTAGAAAAAGT+TGG | + | chr5_2:78915556-78915575 | None:intergenic | 15.0% |
| !!! | GTTTTAATCTTTATTTTACT+CGG | - | chr5_2:78915575-78915594 | Msa0789600:CDS | 15.0% |
| !!! | ACAGTTATAATTTGAAATAT+AGG | - | chr5_2:78915646-78915665 | Msa0789600:intron | 15.0% |
| !!! | ATTTGAAATATAGGAATTAA+TGG | - | chr5_2:78915655-78915674 | Msa0789600:intron | 15.0% |
| !! | TAAAATGGAATAGAATTTGA+TGG | - | chr5_2:78915427-78915446 | Msa0789600:CDS | 20.0% |
| !! | TAATATAAGCACTATATATG+TGG | - | chr5_2:78915469-78915488 | Msa0789600:CDS | 20.0% |
| !! | CGTATTAAAAAAAATTGTGA+TGG | - | chr5_2:78916016-78916035 | Msa0789600:intron | 20.0% |
| !!! | AAAAAAATTGTGATGGAAAA+TGG | - | chr5_2:78916023-78916042 | Msa0789600:intron | 20.0% |
| !! | ATCAGAAATCATTTAGATAT+AGG | - | chr5_2:78916250-78916269 | Msa0789600:CDS | 20.0% |
| !! | TAAAATGGAATAGAATTTGA+TGG | - | chr5_2:78915427-78915446 | Msa0789600:CDS | 20.0% |
| !! | TAATATAAGCACTATATATG+TGG | - | chr5_2:78915469-78915488 | Msa0789600:CDS | 20.0% |
| !! | CGTATTAAAAAAAATTGTGA+TGG | - | chr5_2:78916016-78916035 | Msa0789600:intron | 20.0% |
| !!! | AAAAAAATTGTGATGGAAAA+TGG | - | chr5_2:78916023-78916042 | Msa0789600:intron | 20.0% |
| !! | ATCAGAAATCATTTAGATAT+AGG | - | chr5_2:78916250-78916269 | Msa0789600:CDS | 20.0% |
| ! | ACTACTGTAACATAAATCTT+CGG | + | chr5_2:78915366-78915385 | None:intergenic | 25.0% |
| ! | AATTAATGGAAGTTGTTGAT+GGG | - | chr5_2:78915669-78915688 | Msa0789600:intron | 25.0% |
| ! | AATGATGACAATGTTATTGA+TGG | - | chr5_2:78915692-78915711 | Msa0789600:intron | 25.0% |
| ! | ATGATGACAATGTTATTGAT+GGG | - | chr5_2:78915693-78915712 | Msa0789600:intron | 25.0% |
| ! | TCAAATTTCATTCCAATGTA+TGG | + | chr5_2:78915788-78915807 | None:intergenic | 25.0% |
| ! | GAAATCATTTAGATATAGGT+CGG | - | chr5_2:78916254-78916273 | Msa0789600:CDS | 25.0% |
| ! | ACTACTGTAACATAAATCTT+CGG | + | chr5_2:78915366-78915385 | None:intergenic | 25.0% |
| ! | AATTAATGGAAGTTGTTGAT+GGG | - | chr5_2:78915669-78915688 | Msa0789600:intron | 25.0% |
| ! | AATGATGACAATGTTATTGA+TGG | - | chr5_2:78915692-78915711 | Msa0789600:intron | 25.0% |
| ! | ATGATGACAATGTTATTGAT+GGG | - | chr5_2:78915693-78915712 | Msa0789600:intron | 25.0% |
| ! | TCAAATTTCATTCCAATGTA+TGG | + | chr5_2:78915788-78915807 | None:intergenic | 25.0% |
| ! | GAAATCATTTAGATATAGGT+CGG | - | chr5_2:78916254-78916273 | Msa0789600:CDS | 25.0% |
| TGCTATCATTCTTAAAGGTA+TGG | - | chr5_2:78915392-78915411 | Msa0789600:CDS | 30.0% | |
| GAATTAATGGAAGTTGTTGA+TGG | - | chr5_2:78915668-78915687 | Msa0789600:intron | 30.0% | |
| TGTTGAGAATGATTCATGTA+CGG | - | chr5_2:78915742-78915761 | Msa0789600:CDS | 30.0% | |
| TAAAATTAGTCGTCGTTCAA+AGG | - | chr5_2:78915872-78915891 | Msa0789600:CDS | 30.0% | |
| !!! | GAGTTTTATTGATTCCTCTA+TGG | + | chr5_2:78916117-78916136 | None:intergenic | 30.0% |
| ATTGAAACTATGCAAGATGT+TGG | - | chr5_2:78916148-78916167 | Msa0789600:intron | 30.0% | |
| TTCATATCCTCCATATTGTT+TGG | + | chr5_2:78916206-78916225 | None:intergenic | 30.0% | |
| TATGGAGGATATGAAAACAT+TGG | - | chr5_2:78916211-78916230 | Msa0789600:CDS | 30.0% | |
| TGCTATCATTCTTAAAGGTA+TGG | - | chr5_2:78915392-78915411 | Msa0789600:CDS | 30.0% | |
| GAATTAATGGAAGTTGTTGA+TGG | - | chr5_2:78915668-78915687 | Msa0789600:intron | 30.0% | |
| TGTTGAGAATGATTCATGTA+CGG | - | chr5_2:78915742-78915761 | Msa0789600:CDS | 30.0% | |
| TAAAATTAGTCGTCGTTCAA+AGG | - | chr5_2:78915872-78915891 | Msa0789600:CDS | 30.0% | |
| !!! | GAGTTTTATTGATTCCTCTA+TGG | + | chr5_2:78916117-78916136 | None:intergenic | 30.0% |
| ATTGAAACTATGCAAGATGT+TGG | - | chr5_2:78916148-78916167 | Msa0789600:intron | 30.0% | |
| TTCATATCCTCCATATTGTT+TGG | + | chr5_2:78916206-78916225 | None:intergenic | 30.0% | |
| TATGGAGGATATGAAAACAT+TGG | - | chr5_2:78916211-78916230 | Msa0789600:CDS | 30.0% | |
| ACTGTAACATAAATCTTCGG+TGG | + | chr5_2:78915363-78915382 | None:intergenic | 35.0% | |
| CACTCTGCTATCATTCTTAA+AGG | - | chr5_2:78915387-78915406 | Msa0789600:CDS | 35.0% | |
| AGAATGATTCATGTACGGTT+GGG | - | chr5_2:78915747-78915766 | Msa0789600:CDS | 35.0% | |
| CTAATGAAAGAGCCATACAT+TGG | - | chr5_2:78915773-78915792 | Msa0789600:CDS | 35.0% | |
| AAATCTGCGTCGTTGTTTAA+AGG | - | chr5_2:78915973-78915992 | Msa0789600:intron | 35.0% | |
| TTGTTTAAAGGTGGAATGTG+AGG | - | chr5_2:78915985-78916004 | Msa0789600:intron | 35.0% | |
| CTGGAAAAAGCTCATGATTA+TGG | + | chr5_2:78916072-78916091 | None:intergenic | 35.0% | |
| AGGAAATAATGTGCATATGC+TGG | + | chr5_2:78916091-78916110 | None:intergenic | 35.0% | |
| CATTATTTCCTTTGCCATAG+AGG | - | chr5_2:78916100-78916119 | Msa0789600:intron | 35.0% | |
| !! | TATTGATTCCTCTATGGCAA+AGG | + | chr5_2:78916111-78916130 | None:intergenic | 35.0% |
| AAGCAAAATTTATGCCACTC+TGG | - | chr5_2:78916180-78916199 | Msa0789600:CDS | 35.0% | |
| ACTGTAACATAAATCTTCGG+TGG | + | chr5_2:78915363-78915382 | None:intergenic | 35.0% | |
| CACTCTGCTATCATTCTTAA+AGG | - | chr5_2:78915387-78915406 | Msa0789600:CDS | 35.0% | |
| AGAATGATTCATGTACGGTT+GGG | - | chr5_2:78915747-78915766 | Msa0789600:CDS | 35.0% | |
| CTAATGAAAGAGCCATACAT+TGG | - | chr5_2:78915773-78915792 | Msa0789600:CDS | 35.0% | |
| AAATCTGCGTCGTTGTTTAA+AGG | - | chr5_2:78915973-78915992 | Msa0789600:intron | 35.0% | |
| TTGTTTAAAGGTGGAATGTG+AGG | - | chr5_2:78915985-78916004 | Msa0789600:intron | 35.0% | |
| CTGGAAAAAGCTCATGATTA+TGG | + | chr5_2:78916072-78916091 | None:intergenic | 35.0% | |
| AGGAAATAATGTGCATATGC+TGG | + | chr5_2:78916091-78916110 | None:intergenic | 35.0% | |
| CATTATTTCCTTTGCCATAG+AGG | - | chr5_2:78916100-78916119 | Msa0789600:intron | 35.0% | |
| !! | TATTGATTCCTCTATGGCAA+AGG | + | chr5_2:78916111-78916130 | None:intergenic | 35.0% |
| AAGCAAAATTTATGCCACTC+TGG | - | chr5_2:78916180-78916199 | Msa0789600:CDS | 35.0% | |
| GAGAATGATTCATGTACGGT+TGG | - | chr5_2:78915746-78915765 | Msa0789600:CDS | 40.0% | |
| ATTACGCTGTCTGTTGGATT+TGG | - | chr5_2:78915840-78915859 | Msa0789600:CDS | 40.0% | |
| TTACGCTGTCTGTTGGATTT+GGG | - | chr5_2:78915841-78915860 | Msa0789600:CDS | 40.0% | |
| ACTTATGCTCGCACAAGATA+CGG | - | chr5_2:78915926-78915945 | Msa0789600:intron | 40.0% | |
| GAGAATGATTCATGTACGGT+TGG | - | chr5_2:78915746-78915765 | Msa0789600:CDS | 40.0% | |
| ATTACGCTGTCTGTTGGATT+TGG | - | chr5_2:78915840-78915859 | Msa0789600:CDS | 40.0% | |
| TTACGCTGTCTGTTGGATTT+GGG | - | chr5_2:78915841-78915860 | Msa0789600:CDS | 40.0% | |
| ACTTATGCTCGCACAAGATA+CGG | - | chr5_2:78915926-78915945 | Msa0789600:intron | 40.0% | |
| ATGATTCATGTACGGTTGGG+AGG | - | chr5_2:78915750-78915769 | Msa0789600:CDS | 45.0% | |
| ACACTCATTACGCTGTCTGT+TGG | - | chr5_2:78915834-78915853 | Msa0789600:CDS | 45.0% | |
| CTTATGCTCGCACAAGATAC+GGG | - | chr5_2:78915927-78915946 | Msa0789600:intron | 45.0% | |
| TCTGCGTCGTTGTTTAAAGG+TGG | - | chr5_2:78915976-78915995 | Msa0789600:intron | 45.0% | |
| TCCATATTGTTTGGCCAGAG+TGG | + | chr5_2:78916197-78916216 | None:intergenic | 45.0% | |
| ACTCTGGCCAAACAATATGG+AGG | - | chr5_2:78916196-78916215 | Msa0789600:CDS | 45.0% | |
| ATGATTCATGTACGGTTGGG+AGG | - | chr5_2:78915750-78915769 | Msa0789600:CDS | 45.0% | |
| ACACTCATTACGCTGTCTGT+TGG | - | chr5_2:78915834-78915853 | Msa0789600:CDS | 45.0% | |
| CTTATGCTCGCACAAGATAC+GGG | - | chr5_2:78915927-78915946 | Msa0789600:intron | 45.0% | |
| TCTGCGTCGTTGTTTAAAGG+TGG | - | chr5_2:78915976-78915995 | Msa0789600:intron | 45.0% | |
| TCCATATTGTTTGGCCAGAG+TGG | + | chr5_2:78916197-78916216 | None:intergenic | 45.0% | |
| ACTCTGGCCAAACAATATGG+AGG | - | chr5_2:78916196-78916215 | Msa0789600:CDS | 45.0% | |
| AGCGTGTGTTGAAGGGAGTT+TGG | + | chr5_2:78915328-78915347 | None:intergenic | 50.0% | |
| GTGTGTGAGCGTGTGTTGAA+GGG | + | chr5_2:78915335-78915354 | None:intergenic | 50.0% | |
| TGTGTGTGAGCGTGTGTTGA+AGG | + | chr5_2:78915336-78915355 | None:intergenic | 50.0% | |
| ! | ACGACGCAGATTTTGTGCAG+TGG | + | chr5_2:78915966-78915985 | None:intergenic | 50.0% |
| GCCACTCTGGCCAAACAATA+TGG | - | chr5_2:78916193-78916212 | Msa0789600:CDS | 50.0% | |
| AGCGTGTGTTGAAGGGAGTT+TGG | + | chr5_2:78915328-78915347 | None:intergenic | 50.0% | |
| GTGTGTGAGCGTGTGTTGAA+GGG | + | chr5_2:78915335-78915354 | None:intergenic | 50.0% | |
| TGTGTGTGAGCGTGTGTTGA+AGG | + | chr5_2:78915336-78915355 | None:intergenic | 50.0% | |
| ! | ACGACGCAGATTTTGTGCAG+TGG | + | chr5_2:78915966-78915985 | None:intergenic | 50.0% |
| GCCACTCTGGCCAAACAATA+TGG | - | chr5_2:78916193-78916212 | Msa0789600:CDS | 50.0% | |
| GCACAAGATACGGGAAGACG+CGG | - | chr5_2:78915936-78915955 | Msa0789600:intron | 55.0% | |
| CACAAGATACGGGAAGACGC+GGG | - | chr5_2:78915937-78915956 | Msa0789600:intron | 55.0% | |
| GCACAAGATACGGGAAGACG+CGG | - | chr5_2:78915936-78915955 | Msa0789600:intron | 55.0% | |
| CACAAGATACGGGAAGACGC+GGG | - | chr5_2:78915937-78915956 | Msa0789600:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 78915297 | 78916282 | 78915297 | ID=Msa0789600;Name=Msa0789600 |
| chr5_2 | mRNA | 78915297 | 78916282 | 78915297 | ID=Msa0789600-mRNA-1;Parent=Msa0789600;Name=Msa0789600-mRNA-1;_AED=0.31;_eAED=0.32;_QI=0|0|0|0.66|0.5|0.66|3|0|219 |
| chr5_2 | exon | 78916166 | 78916282 | 78916166 | ID=Msa0789600-mRNA-1:exon:23647;Parent=Msa0789600-mRNA-1 |
| chr5_2 | exon | 78915732 | 78915911 | 78915732 | ID=Msa0789600-mRNA-1:exon:23646;Parent=Msa0789600-mRNA-1 |
| chr5_2 | exon | 78915297 | 78915659 | 78915297 | ID=Msa0789600-mRNA-1:exon:23645;Parent=Msa0789600-mRNA-1 |
| chr5_2 | CDS | 78916166 | 78916282 | 78916166 | ID=Msa0789600-mRNA-1:cds;Parent=Msa0789600-mRNA-1 |
| chr5_2 | CDS | 78915732 | 78915911 | 78915732 | ID=Msa0789600-mRNA-1:cds;Parent=Msa0789600-mRNA-1 |
| chr5_2 | CDS | 78915297 | 78915659 | 78915297 | ID=Msa0789600-mRNA-1:cds;Parent=Msa0789600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
