AlfalfaGEDB | Msa0789600

M. sativa cultivar zhongmu-4 / Msa0789600

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0789600	XP_039688775.1	66.337	202	43	2	42	218	1	202	4.25e-85	267

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0789600	sp\|Q9SWG3\|FAR1_ARATH	35.023	217	104	6	39	218	1	217	8.35e-28	114

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0789600	A0A2K3NBU0	65.816	196	45	1	45	218	3	198	3.42e-79	260

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TFs/TRs:

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Gene ID	Type	Classification
Msa0789600	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0789600	MtrunA17_Chr1g0207551	36.364	165	81	2	78	218	33	197	4.35e-26	105
Msa0789600	MtrunA17_Chr2g0329031	33.523	176	86	4	67	218	2	170	7.23e-22	93.2
Msa0789600	MtrunA17_Chr5g0448761	30.233	172	89	4	78	218	59	230	3.39e-18	82.8
Msa0789600	MtrunA17_Chr3g0080351	28.333	180	67	4	78	218	75	231	3.61e-17	79.7
Msa0789600	MtrunA17_Chr6g0451441	28.500	200	121	5	40	218	49	247	3.58e-14	70.9
Msa0789600	MtrunA17_Chr2g0287651	24.468	188	112	4	58	215	53	240	1.04e-13	69.7
Msa0789600	MtrunA17_Chr7g0258861	26.220	164	94	3	78	214	9	172	1.98e-12	65.1
Msa0789600	MtrunA17_Chr5g0440451	28.571	133	76	3	39	154	1	131	7.19e-12	64.3
Msa0789600	MtrunA17_Chr7g0233911	33.793	145	62	6	49	162	2	143	1.97e-11	61.2
Msa0789600	MtrunA17_Chr2g0324011	26.627	169	94	5	78	218	9	175	2.43e-11	62.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0789600	AT4G15090.1	35.023	217	104	6	39	218	1	217	8.49e-29	114
Msa0789600	AT4G15090.5	35.023	217	104	6	39	218	1	217	8.49e-29	114
Msa0789600	AT4G15090.3	35.023	217	104	6	39	218	1	217	8.49e-29	114
Msa0789600	AT4G15090.2	35.023	217	104	6	39	218	1	217	8.49e-29	114
Msa0789600	AT4G15090.4	35.023	217	104	6	39	218	1	217	8.49e-29	114
Msa0789600	AT4G38180.1	31.148	183	94	4	66	218	62	242	2.16e-21	92.4
Msa0789600	AT3G22170.2	27.273	242	101	7	30	218	7	226	1.13e-19	87.4
Msa0789600	AT3G22170.1	27.273	242	101	7	30	218	7	226	1.13e-19	87.4
Msa0789600	AT1G76320.2	31.875	160	79	4	83	218	1	154	1.16e-16	78.6
Msa0789600	AT1G76320.1	31.875	160	79	4	83	218	1	154	1.21e-16	78.6

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Find 38 sgRNAs with CRISPR-Local

Find 104 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCTGCGTCGTTGTTTAA+AGG	0.297168	5_2:-78915584	Msa0789600:CDS
AAGCAAAATTTATGCCACTC+TGG	0.565072	5_2:-78915377	Msa0789600:CDS
AATGATGACAATGTTATTGA+TGG	0.455364	5_2:-78915865	Msa0789600:CDS
AATTAATGGAAGTTGTTGAT+GGG	0.547188	5_2:-78915888	Msa0789600:CDS
ACTACTGTAACATAAATCTT+CGG	0.535461	5_2:+78916194	None:intergenic
ACTCTGGCCAAACAATATGG+AGG	0.695583	5_2:-78915361	Msa0789600:CDS
ACTGTAACATAAATCTTCGG+TGG	0.635445	5_2:+78916197	None:intergenic
ACTTATGCTCGCACAAGATA+CGG	0.484780	5_2:-78915631	Msa0789600:CDS
AGAATGATTCATGTACGGTT+GGG	0.505397	5_2:-78915810	Msa0789600:CDS
AGCGTGTGTTGAAGGGAGTT+TGG	0.475218	5_2:+78916232	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGCTATCATTCTTAAAGGTA+TGG	-	chr5_2:78915392-78915411	Msa0789600:CDS	30.0%
GAATTAATGGAAGTTGTTGA+TGG	-	chr5_2:78915668-78915687	Msa0789600:intron	30.0%
TGTTGAGAATGATTCATGTA+CGG	-	chr5_2:78915742-78915761	Msa0789600:CDS	30.0%
TAAAATTAGTCGTCGTTCAA+AGG	-	chr5_2:78915872-78915891	Msa0789600:CDS	30.0%
ATTGAAACTATGCAAGATGT+TGG	-	chr5_2:78916148-78916167	Msa0789600:intron	30.0%
TTCATATCCTCCATATTGTT+TGG	+	chr5_2:78916206-78916225	None:intergenic	30.0%
TATGGAGGATATGAAAACAT+TGG	-	chr5_2:78916211-78916230	Msa0789600:CDS	30.0%
TGCTATCATTCTTAAAGGTA+TGG	-	chr5_2:78915392-78915411	Msa0789600:CDS	30.0%
GAATTAATGGAAGTTGTTGA+TGG	-	chr5_2:78915668-78915687	Msa0789600:intron	30.0%
TGTTGAGAATGATTCATGTA+CGG	-	chr5_2:78915742-78915761	Msa0789600:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	78915297	78916282	78915297	ID=Msa0789600;Name=Msa0789600
chr5_2	mRNA	78915297	78916282	78915297	ID=Msa0789600-mRNA-1;Parent=Msa0789600;Name=Msa0789600-mRNA-1;_AED=0.31;_eAED=0.32;_QI=0\|0\|0\|0.66\|0.5\|0.66\|3\|0\|219
chr5_2	exon	78916166	78916282	78916166	ID=Msa0789600-mRNA-1:exon:23647;Parent=Msa0789600-mRNA-1
chr5_2	exon	78915732	78915911	78915732	ID=Msa0789600-mRNA-1:exon:23646;Parent=Msa0789600-mRNA-1
chr5_2	exon	78915297	78915659	78915297	ID=Msa0789600-mRNA-1:exon:23645;Parent=Msa0789600-mRNA-1
chr5_2	CDS	78916166	78916282	78916166	ID=Msa0789600-mRNA-1:cds;Parent=Msa0789600-mRNA-1
chr5_2	CDS	78915732	78915911	78915732	ID=Msa0789600-mRNA-1:cds;Parent=Msa0789600-mRNA-1
chr5_2	CDS	78915297	78915659	78915297	ID=Msa0789600-mRNA-1:cds;Parent=Msa0789600-mRNA-1

Gene Sequence

>Msa0789600

ATGAAAATTGGTATTGTCAAATTCTGTGCCAAACTCCCTTCAACACACGCTCACACACAAAAGCCACCGAAGATTTATGTTACAGTAGTGCACTCTGCTATCATTCTTAAAGGTATGGAATTAATGGAAGTTGTTGATGGGAATGATGACAATGTTATTGATGGGAATGAAGAGCAATCTTTCACTGAGATTGTTGAGAATGATTCATGTACGGTTGGGAGGCTAATGAAAGAGCCATACATTGGAATGAAATTTGATTCACAAGAAAATGCTTATTCATTCTACACTCATTACGCTTTATGCACTTATGCTCGCACAAGATACGGGAAGACGCGGGAATCCACTGCACAAAATCTGCGTCGTTGTTTAAAGGTGGAATGTGAGGCTAGCTTGCGTATTAAAAAAAATTGTGATGGAAAATGGATTGTTTACAACTTCATTAAAGACCATAATCATGAGCTTTTTCCAGCATATGCACATTATTTCCTTTGCCATAGAGGAATCAATAAAACTCAAAAGCATTGTATTGAAACTATGCAAGATGTTGGAGTGAGAACAAGCAAAATTTATGCCACTCTGGCCAAACAATATGGAGGATATGAAAACATTGGTTGTTTGCAGAAAGATATCAGAAATCATTTAGATATAGGTCGGTGTTGA

Protein sequence

>Msa0789600

MKIGIVKFCAKLPSTHAHTQKPPKIYVTVVHSAIILKGMELMEVVDGNDDNVIDGNEEQSFTEIVENDSCTVGRLMKEPYIGMKFDSQENAYSFYTHYALCTYARTRYGKTRESTAQNLRRCLKVECEASLRIKKNCDGKWIVYNFIKDHNHELFPAYAHYFLCHRGINKTQKHCIETMQDVGVRTSKIYATLAKQYGGYENIGCLQKDIRNHLDIGRC*