Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789610 | sp|Q9SWG3|FAR1_ARATH | 33.333 | 249 | 131 | 6 | 39 | 252 | 1 | 249 | 1.91e-32 | 128 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789610 | A0A2K3NBU0 | 59.130 | 230 | 70 | 4 | 45 | 252 | 3 | 230 | 1.39e-79 | 263 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0789610 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789610 | MtrunA17_Chr1g0207551 | 34.158 | 202 | 111 | 4 | 73 | 252 | 28 | 229 | 1.35e-28 | 114 |
| Msa0789610 | MtrunA17_Chr2g0329031 | 34.597 | 211 | 103 | 6 | 67 | 252 | 2 | 202 | 1.89e-28 | 113 |
| Msa0789610 | MtrunA17_Chr3g0080351 | 33.019 | 212 | 84 | 5 | 77 | 252 | 74 | 263 | 3.42e-28 | 112 |
| Msa0789610 | MtrunA17_Chr5g0448761 | 30.542 | 203 | 111 | 6 | 77 | 250 | 58 | 259 | 5.87e-21 | 92.0 |
| Msa0789610 | MtrunA17_Chr6g0451441 | 28.415 | 183 | 115 | 4 | 40 | 207 | 49 | 230 | 3.25e-14 | 71.6 |
| Msa0789610 | MtrunA17_Chr2g0291591 | 25.100 | 251 | 155 | 7 | 23 | 252 | 19 | 257 | 4.62e-13 | 68.6 |
| Msa0789610 | MtrunA17_Chr2g0296781 | 29.630 | 135 | 87 | 2 | 122 | 252 | 60 | 190 | 5.70e-13 | 68.6 |
| Msa0789610 | MtrunA17_Chr5g0441581 | 25.352 | 213 | 126 | 5 | 63 | 252 | 16 | 218 | 5.85e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789610 | AT4G15090.1 | 33.333 | 249 | 131 | 6 | 39 | 252 | 1 | 249 | 1.94e-33 | 128 |
| Msa0789610 | AT4G15090.5 | 33.333 | 249 | 131 | 6 | 39 | 252 | 1 | 249 | 1.94e-33 | 128 |
| Msa0789610 | AT4G15090.3 | 33.333 | 249 | 131 | 6 | 39 | 252 | 1 | 249 | 1.94e-33 | 128 |
| Msa0789610 | AT4G15090.2 | 33.333 | 249 | 131 | 6 | 39 | 252 | 1 | 249 | 1.94e-33 | 128 |
| Msa0789610 | AT4G15090.4 | 33.333 | 249 | 131 | 6 | 39 | 252 | 1 | 249 | 1.94e-33 | 128 |
| Msa0789610 | AT3G22170.2 | 28.467 | 274 | 123 | 7 | 30 | 252 | 7 | 258 | 4.07e-27 | 110 |
| Msa0789610 | AT3G22170.1 | 28.467 | 274 | 123 | 7 | 30 | 252 | 7 | 258 | 4.07e-27 | 110 |
| Msa0789610 | AT1G76320.2 | 32.292 | 192 | 102 | 5 | 83 | 252 | 1 | 186 | 2.66e-24 | 102 |
| Msa0789610 | AT1G76320.1 | 32.292 | 192 | 102 | 5 | 83 | 252 | 1 | 186 | 2.74e-24 | 102 |
| Msa0789610 | AT1G76320.4 | 32.292 | 192 | 102 | 5 | 83 | 252 | 1 | 186 | 2.74e-24 | 102 |
| Msa0789610 | AT1G76320.3 | 32.292 | 192 | 102 | 5 | 83 | 252 | 1 | 186 | 3.08e-24 | 101 |
| Msa0789610 | AT4G38180.1 | 30.516 | 213 | 117 | 6 | 66 | 250 | 62 | 271 | 7.21e-24 | 100 |
Find 37 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGAAATATAGGAATTAA+TGG | 0.248279 | 5_2:-78932331 | Msa0789610:intron |
| CACTCTGCTATCATTCTTAA+AGG | 0.277937 | 5_2:-78932599 | Msa0789610:CDS |
| TTCATATCCTCCATATTGTT+TGG | 0.296308 | 5_2:+78931783 | None:intergenic |
| GCCACTCTGGCCAAACAATA+TGG | 0.314518 | 5_2:-78931793 | Msa0789610:CDS |
| TCGGCGTTTGACATTAGAAT+TGG | 0.337407 | 5_2:-78931714 | Msa0789610:CDS |
| TAATGAGTGTAGAATGAATA+AGG | 0.352050 | 5_2:+78932165 | None:intergenic |
| TCAATTGCATAAAAGAATCT+TGG | 0.356205 | 5_2:+78931641 | None:intergenic |
| GAGTAAAGTGTAATGAAAAT+TGG | 0.367197 | 5_2:-78932701 | None:intergenic |
| TCAAATTCCATTCCAATGTA+TGG | 0.425126 | 5_2:+78932201 | None:intergenic |
| CGGCGTTTGACATTAGAATT+GGG | 0.436883 | 5_2:-78931713 | Msa0789610:CDS |
| AGAAAATAATGTGCATATGC+TGG | 0.444091 | 5_2:+78931898 | None:intergenic |
| GAATTAATGGAAGTTGTTGA+TGG | 0.448629 | 5_2:-78932318 | Msa0789610:CDS |
| ACTTATGCTTGCACAAGATA+AGG | 0.452056 | 5_2:-78932060 | Msa0789610:CDS |
| AATGATGACAATGTTATTGA+TGG | 0.455364 | 5_2:-78932294 | Msa0789610:CDS |
| CTTATGCTTGCACAAGATAA+GGG | 0.467144 | 5_2:-78932059 | Msa0789610:CDS |
| TGCTATCATTCTTAAAGGTA+TGG | 0.477048 | 5_2:-78932594 | Msa0789610:intron |
| TGTGTGTGAGCGTGTGTTGA+AGG | 0.481794 | 5_2:+78932653 | None:intergenic |
| AGAATGATTCATGTACGGTT+GGG | 0.505397 | 5_2:-78932239 | Msa0789610:CDS |
| GTGTGTGAGCGTGTGTTGAA+GGG | 0.519552 | 5_2:+78932654 | None:intergenic |
| ACTACTGTAACATAAATCTT+CGG | 0.535461 | 5_2:+78932623 | None:intergenic |
| AATTAATGGAAGTTGTTGAT+GGG | 0.547188 | 5_2:-78932317 | Msa0789610:CDS |
| ATTGAAACTATGCAAGATGT+TGG | 0.548761 | 5_2:-78931838 | Msa0789610:CDS |
| TCCATATTGTTTGGCCAGAG+TGG | 0.548986 | 5_2:+78931792 | None:intergenic |
| GGGAGATGCAAATGCAATGT+TGG | 0.559895 | 5_2:-78931693 | Msa0789610:CDS |
| GAGAATGATTCATGTACGGT+TGG | 0.560679 | 5_2:-78932240 | Msa0789610:CDS |
| AAGCAAAATTTATGCCACTC+TGG | 0.565072 | 5_2:-78931806 | Msa0789610:CDS |
| GATAGAGCCATACATTGGAA+TGG | 0.572004 | 5_2:-78932208 | Msa0789610:CDS |
| AGAAATCATTTAGATATAGT+CGG | 0.576258 | 5_2:-78931733 | Msa0789610:CDS |
| TTGTTTAAAGGTGGAATGTG+AGG | 0.581351 | 5_2:-78932001 | Msa0789610:intron |
| CTAATGATAGAGCCATACAT+TGG | 0.590833 | 5_2:-78932213 | Msa0789610:CDS |
| TGTTGAGAATGATTCATGTA+CGG | 0.602674 | 5_2:-78932244 | Msa0789610:CDS |
| ATGATTCATGTACGGTTGGG+AGG | 0.609038 | 5_2:-78932236 | Msa0789610:CDS |
| ATGATGACAATGTTATTGAT+GGG | 0.630031 | 5_2:-78932293 | Msa0789610:CDS |
| ACTGTAACATAAATCTTCGG+TGG | 0.635445 | 5_2:+78932626 | None:intergenic |
| GCACAAGATAAGGGAAGACG+CGG | 0.654828 | 5_2:-78932050 | Msa0789610:CDS |
| CACAAGATAAGGGAAGACGC+GGG | 0.685907 | 5_2:-78932049 | Msa0789610:CDS |
| ACTCTGGCCAAACAATATGG+AGG | 0.695583 | 5_2:-78931790 | Msa0789610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTATTTTTTTAGAAAATGT+TGG | + | chr5_2:78931878-78931897 | None:intergenic | 15.0% |
| !!! | GTTTTAATCTTTATTTTACT+TGG | - | chr5_2:78931897-78931916 | Msa0789610:CDS | 15.0% |
| !!! | ATTTGAAATATAGGAATTAA+TGG | - | chr5_2:78931977-78931996 | Msa0789610:CDS | 15.0% |
| !!! | CTTATTTTTTTAGAAAATGT+TGG | + | chr5_2:78931878-78931897 | None:intergenic | 15.0% |
| !!! | GTTTTAATCTTTATTTTACT+TGG | - | chr5_2:78931897-78931916 | Msa0789610:CDS | 15.0% |
| !!! | ATTTGAAATATAGGAATTAA+TGG | - | chr5_2:78931977-78931996 | Msa0789610:CDS | 15.0% |
| !! | TGGTAAATATTACTATAGTT+TGG | - | chr5_2:78931734-78931753 | Msa0789610:CDS | 20.0% |
| !! | AATATTACTATAGTTTGGTA+TGG | - | chr5_2:78931739-78931758 | Msa0789610:CDS | 20.0% |
| !! | TAATATAAGCACTATATATG+TGG | - | chr5_2:78931791-78931810 | Msa0789610:CDS | 20.0% |
| !!! | ACAGTTATGATTTGAAATAT+AGG | - | chr5_2:78931968-78931987 | Msa0789610:CDS | 20.0% |
| !! | CGTATTAAAAAAAATTGTGA+TGG | - | chr5_2:78932338-78932357 | Msa0789610:intron | 20.0% |
| !!! | AAAAAAATTGTGATGGAAAA+TGG | - | chr5_2:78932345-78932364 | Msa0789610:intron | 20.0% |
| !! | AGAAATCATTTAGATATAGT+CGG | - | chr5_2:78932575-78932594 | Msa0789610:intron | 20.0% |
| !!! | ATTCTTTTATGCAATTGATT+TGG | - | chr5_2:78932672-78932691 | Msa0789610:CDS | 20.0% |
| !! | TGGTAAATATTACTATAGTT+TGG | - | chr5_2:78931734-78931753 | Msa0789610:CDS | 20.0% |
| !! | AATATTACTATAGTTTGGTA+TGG | - | chr5_2:78931739-78931758 | Msa0789610:CDS | 20.0% |
| !! | TAATATAAGCACTATATATG+TGG | - | chr5_2:78931791-78931810 | Msa0789610:CDS | 20.0% |
| !!! | ACAGTTATGATTTGAAATAT+AGG | - | chr5_2:78931968-78931987 | Msa0789610:CDS | 20.0% |
| !! | CGTATTAAAAAAAATTGTGA+TGG | - | chr5_2:78932338-78932357 | Msa0789610:intron | 20.0% |
| !!! | AAAAAAATTGTGATGGAAAA+TGG | - | chr5_2:78932345-78932364 | Msa0789610:intron | 20.0% |
| !! | AGAAATCATTTAGATATAGT+CGG | - | chr5_2:78932575-78932594 | Msa0789610:intron | 20.0% |
| !!! | ATTCTTTTATGCAATTGATT+TGG | - | chr5_2:78932672-78932691 | Msa0789610:CDS | 20.0% |
| ! | ACTACTGTAACATAAATCTT+CGG | + | chr5_2:78931688-78931707 | None:intergenic | 25.0% |
| ! | TAGTTTGGTATGGAATTTAA+TGG | - | chr5_2:78931749-78931768 | Msa0789610:intron | 25.0% |
| ! | AATTAATGGAAGTTGTTGAT+GGG | - | chr5_2:78931991-78932010 | Msa0789610:CDS | 25.0% |
| ! | AATGATGACAATGTTATTGA+TGG | - | chr5_2:78932014-78932033 | Msa0789610:intron | 25.0% |
| ! | ATGATGACAATGTTATTGAT+GGG | - | chr5_2:78932015-78932034 | Msa0789610:intron | 25.0% |
| ! | TAATGAGTGTAGAATGAATA+AGG | + | chr5_2:78932146-78932165 | None:intergenic | 25.0% |
| ! | TATGGAGGATATGAAAAAAT+TGG | - | chr5_2:78932533-78932552 | Msa0789610:intron | 25.0% |
| ! | TCAATTGCATAAAAGAATCT+TGG | + | chr5_2:78932670-78932689 | None:intergenic | 25.0% |
| ! | ACTACTGTAACATAAATCTT+CGG | + | chr5_2:78931688-78931707 | None:intergenic | 25.0% |
| ! | TAGTTTGGTATGGAATTTAA+TGG | - | chr5_2:78931749-78931768 | Msa0789610:intron | 25.0% |
| ! | AATTAATGGAAGTTGTTGAT+GGG | - | chr5_2:78931991-78932010 | Msa0789610:CDS | 25.0% |
| ! | AATGATGACAATGTTATTGA+TGG | - | chr5_2:78932014-78932033 | Msa0789610:intron | 25.0% |
| ! | ATGATGACAATGTTATTGAT+GGG | - | chr5_2:78932015-78932034 | Msa0789610:intron | 25.0% |
| ! | TAATGAGTGTAGAATGAATA+AGG | + | chr5_2:78932146-78932165 | None:intergenic | 25.0% |
| ! | TATGGAGGATATGAAAAAAT+TGG | - | chr5_2:78932533-78932552 | Msa0789610:intron | 25.0% |
| ! | TCAATTGCATAAAAGAATCT+TGG | + | chr5_2:78932670-78932689 | None:intergenic | 25.0% |
| TGCTATCATTCTTAAAGGTA+TGG | - | chr5_2:78931714-78931733 | Msa0789610:CDS | 30.0% | |
| GAATTAATGGAAGTTGTTGA+TGG | - | chr5_2:78931990-78932009 | Msa0789610:CDS | 30.0% | |
| TGTTGAGAATGATTCATGTA+CGG | - | chr5_2:78932064-78932083 | Msa0789610:CDS | 30.0% | |
| TCAAATTCCATTCCAATGTA+TGG | + | chr5_2:78932110-78932129 | None:intergenic | 30.0% | |
| TAAAATTAGTCGTCGTTCAA+AGG | - | chr5_2:78932194-78932213 | Msa0789610:CDS | 30.0% | |
| AAATTTGCGTCGTTGTTTAA+AGG | - | chr5_2:78932295-78932314 | Msa0789610:CDS | 30.0% | |
| AGAAAATAATGTGCATATGC+TGG | + | chr5_2:78932413-78932432 | None:intergenic | 30.0% | |
| ! | CATTATTTTCTTTGCCATAG+AGG | - | chr5_2:78932422-78932441 | Msa0789610:intron | 30.0% |
| !!! | GAGTTTTATTGATTCCTCTA+TGG | + | chr5_2:78932439-78932458 | None:intergenic | 30.0% |
| ATTGAAACTATGCAAGATGT+TGG | - | chr5_2:78932470-78932489 | Msa0789610:intron | 30.0% | |
| TTCATATCCTCCATATTGTT+TGG | + | chr5_2:78932528-78932547 | None:intergenic | 30.0% | |
| TGCTATCATTCTTAAAGGTA+TGG | - | chr5_2:78931714-78931733 | Msa0789610:CDS | 30.0% | |
| GAATTAATGGAAGTTGTTGA+TGG | - | chr5_2:78931990-78932009 | Msa0789610:CDS | 30.0% | |
| TGTTGAGAATGATTCATGTA+CGG | - | chr5_2:78932064-78932083 | Msa0789610:CDS | 30.0% | |
| TCAAATTCCATTCCAATGTA+TGG | + | chr5_2:78932110-78932129 | None:intergenic | 30.0% | |
| TAAAATTAGTCGTCGTTCAA+AGG | - | chr5_2:78932194-78932213 | Msa0789610:CDS | 30.0% | |
| AAATTTGCGTCGTTGTTTAA+AGG | - | chr5_2:78932295-78932314 | Msa0789610:CDS | 30.0% | |
| AGAAAATAATGTGCATATGC+TGG | + | chr5_2:78932413-78932432 | None:intergenic | 30.0% | |
| ! | CATTATTTTCTTTGCCATAG+AGG | - | chr5_2:78932422-78932441 | Msa0789610:intron | 30.0% |
| !!! | GAGTTTTATTGATTCCTCTA+TGG | + | chr5_2:78932439-78932458 | None:intergenic | 30.0% |
| ATTGAAACTATGCAAGATGT+TGG | - | chr5_2:78932470-78932489 | Msa0789610:intron | 30.0% | |
| TTCATATCCTCCATATTGTT+TGG | + | chr5_2:78932528-78932547 | None:intergenic | 30.0% | |
| ACTGTAACATAAATCTTCGG+TGG | + | chr5_2:78931685-78931704 | None:intergenic | 35.0% | |
| CACTCTGCTATCATTCTTAA+AGG | - | chr5_2:78931709-78931728 | Msa0789610:CDS | 35.0% | |
| AGAATGATTCATGTACGGTT+GGG | - | chr5_2:78932069-78932088 | Msa0789610:CDS | 35.0% | |
| CTAATGATAGAGCCATACAT+TGG | - | chr5_2:78932095-78932114 | Msa0789610:CDS | 35.0% | |
| ACTTATGCTTGCACAAGATA+AGG | - | chr5_2:78932248-78932267 | Msa0789610:CDS | 35.0% | |
| CTTATGCTTGCACAAGATAA+GGG | - | chr5_2:78932249-78932268 | Msa0789610:CDS | 35.0% | |
| TTGTTTAAAGGTGGAATGTG+AGG | - | chr5_2:78932307-78932326 | Msa0789610:CDS | 35.0% | |
| CTGGAAAAAGCTCATGATTA+TGG | + | chr5_2:78932394-78932413 | None:intergenic | 35.0% | |
| AAGCAAAATTTATGCCACTC+TGG | - | chr5_2:78932502-78932521 | Msa0789610:intron | 35.0% | |
| ACTGTAACATAAATCTTCGG+TGG | + | chr5_2:78931685-78931704 | None:intergenic | 35.0% | |
| CACTCTGCTATCATTCTTAA+AGG | - | chr5_2:78931709-78931728 | Msa0789610:CDS | 35.0% | |
| AGAATGATTCATGTACGGTT+GGG | - | chr5_2:78932069-78932088 | Msa0789610:CDS | 35.0% | |
| CTAATGATAGAGCCATACAT+TGG | - | chr5_2:78932095-78932114 | Msa0789610:CDS | 35.0% | |
| ACTTATGCTTGCACAAGATA+AGG | - | chr5_2:78932248-78932267 | Msa0789610:CDS | 35.0% | |
| CTTATGCTTGCACAAGATAA+GGG | - | chr5_2:78932249-78932268 | Msa0789610:CDS | 35.0% | |
| TTGTTTAAAGGTGGAATGTG+AGG | - | chr5_2:78932307-78932326 | Msa0789610:CDS | 35.0% | |
| CTGGAAAAAGCTCATGATTA+TGG | + | chr5_2:78932394-78932413 | None:intergenic | 35.0% | |
| AAGCAAAATTTATGCCACTC+TGG | - | chr5_2:78932502-78932521 | Msa0789610:intron | 35.0% | |
| GAGAATGATTCATGTACGGT+TGG | - | chr5_2:78932068-78932087 | Msa0789610:CDS | 40.0% | |
| GATAGAGCCATACATTGGAA+TGG | - | chr5_2:78932100-78932119 | Msa0789610:intron | 40.0% | |
| ATTACGCTGTCTGTTGGATT+TGG | - | chr5_2:78932162-78932181 | Msa0789610:CDS | 40.0% | |
| TTACGCTGTCTGTTGGATTT+GGG | - | chr5_2:78932163-78932182 | Msa0789610:CDS | 40.0% | |
| TTTGCGTCGTTGTTTAAAGG+TGG | - | chr5_2:78932298-78932317 | Msa0789610:CDS | 40.0% | |
| TCGGCGTTTGACATTAGAAT+TGG | - | chr5_2:78932594-78932613 | Msa0789610:intron | 40.0% | |
| CGGCGTTTGACATTAGAATT+GGG | - | chr5_2:78932595-78932614 | Msa0789610:CDS | 40.0% | |
| GAGAATGATTCATGTACGGT+TGG | - | chr5_2:78932068-78932087 | Msa0789610:CDS | 40.0% | |
| GATAGAGCCATACATTGGAA+TGG | - | chr5_2:78932100-78932119 | Msa0789610:intron | 40.0% | |
| ATTACGCTGTCTGTTGGATT+TGG | - | chr5_2:78932162-78932181 | Msa0789610:CDS | 40.0% | |
| TTACGCTGTCTGTTGGATTT+GGG | - | chr5_2:78932163-78932182 | Msa0789610:CDS | 40.0% | |
| TTTGCGTCGTTGTTTAAAGG+TGG | - | chr5_2:78932298-78932317 | Msa0789610:CDS | 40.0% | |
| TCGGCGTTTGACATTAGAAT+TGG | - | chr5_2:78932594-78932613 | Msa0789610:intron | 40.0% | |
| CGGCGTTTGACATTAGAATT+GGG | - | chr5_2:78932595-78932614 | Msa0789610:CDS | 40.0% | |
| ATGATTCATGTACGGTTGGG+AGG | - | chr5_2:78932072-78932091 | Msa0789610:CDS | 45.0% | |
| ACACTCATTACGCTGTCTGT+TGG | - | chr5_2:78932156-78932175 | Msa0789610:intron | 45.0% | |
| ! | ACGACGCAAATTTTGTGCAG+TGG | + | chr5_2:78932288-78932307 | None:intergenic | 45.0% |
| TCCATATTGTTTGGCCAGAG+TGG | + | chr5_2:78932519-78932538 | None:intergenic | 45.0% | |
| ACTCTGGCCAAACAATATGG+AGG | - | chr5_2:78932518-78932537 | Msa0789610:intron | 45.0% | |
| GGGAGATGCAAATGCAATGT+TGG | - | chr5_2:78932615-78932634 | Msa0789610:CDS | 45.0% | |
| ATGATTCATGTACGGTTGGG+AGG | - | chr5_2:78932072-78932091 | Msa0789610:CDS | 45.0% | |
| ACACTCATTACGCTGTCTGT+TGG | - | chr5_2:78932156-78932175 | Msa0789610:intron | 45.0% | |
| ! | ACGACGCAAATTTTGTGCAG+TGG | + | chr5_2:78932288-78932307 | None:intergenic | 45.0% |
| TCCATATTGTTTGGCCAGAG+TGG | + | chr5_2:78932519-78932538 | None:intergenic | 45.0% | |
| ACTCTGGCCAAACAATATGG+AGG | - | chr5_2:78932518-78932537 | Msa0789610:intron | 45.0% | |
| GGGAGATGCAAATGCAATGT+TGG | - | chr5_2:78932615-78932634 | Msa0789610:CDS | 45.0% | |
| GTGTGTGAGCGTGTGTTGAA+GGG | + | chr5_2:78931657-78931676 | None:intergenic | 50.0% | |
| TGTGTGTGAGCGTGTGTTGA+AGG | + | chr5_2:78931658-78931677 | None:intergenic | 50.0% | |
| GCACAAGATAAGGGAAGACG+CGG | - | chr5_2:78932258-78932277 | Msa0789610:CDS | 50.0% | |
| CACAAGATAAGGGAAGACGC+GGG | - | chr5_2:78932259-78932278 | Msa0789610:CDS | 50.0% | |
| GCCACTCTGGCCAAACAATA+TGG | - | chr5_2:78932515-78932534 | Msa0789610:intron | 50.0% | |
| GTGTGTGAGCGTGTGTTGAA+GGG | + | chr5_2:78931657-78931676 | None:intergenic | 50.0% | |
| TGTGTGTGAGCGTGTGTTGA+AGG | + | chr5_2:78931658-78931677 | None:intergenic | 50.0% | |
| GCACAAGATAAGGGAAGACG+CGG | - | chr5_2:78932258-78932277 | Msa0789610:CDS | 50.0% | |
| CACAAGATAAGGGAAGACGC+GGG | - | chr5_2:78932259-78932278 | Msa0789610:CDS | 50.0% | |
| GCCACTCTGGCCAAACAATA+TGG | - | chr5_2:78932515-78932534 | Msa0789610:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 78931619 | 78932711 | 78931619 | ID=Msa0789610;Name=Msa0789610 |
| chr5_2 | mRNA | 78931619 | 78932711 | 78931619 | ID=Msa0789610-mRNA-1;Parent=Msa0789610;Name=Msa0789610-mRNA-1;_AED=0.19;_eAED=0.32;_QI=0|0|0|0.8|0.25|0.2|5|0|257 |
| chr5_2 | exon | 78932595 | 78932711 | 78932595 | ID=Msa0789610-mRNA-1:exon:23644;Parent=Msa0789610-mRNA-1 |
| chr5_2 | exon | 78932161 | 78932340 | 78932161 | ID=Msa0789610-mRNA-1:exon:23643;Parent=Msa0789610-mRNA-1 |
| chr5_2 | exon | 78932022 | 78932114 | 78932022 | ID=Msa0789610-mRNA-1:exon:23642;Parent=Msa0789610-mRNA-1 |
| chr5_2 | exon | 78931776 | 78932013 | 78931776 | ID=Msa0789610-mRNA-1:exon:23641;Parent=Msa0789610-mRNA-1 |
| chr5_2 | exon | 78931619 | 78931764 | 78931619 | ID=Msa0789610-mRNA-1:exon:23640;Parent=Msa0789610-mRNA-1 |
| chr5_2 | CDS | 78932595 | 78932711 | 78932595 | ID=Msa0789610-mRNA-1:cds;Parent=Msa0789610-mRNA-1 |
| chr5_2 | CDS | 78932161 | 78932340 | 78932161 | ID=Msa0789610-mRNA-1:cds;Parent=Msa0789610-mRNA-1 |
| chr5_2 | CDS | 78932022 | 78932114 | 78932022 | ID=Msa0789610-mRNA-1:cds;Parent=Msa0789610-mRNA-1 |
| chr5_2 | CDS | 78931776 | 78932013 | 78931776 | ID=Msa0789610-mRNA-1:cds;Parent=Msa0789610-mRNA-1 |
| chr5_2 | CDS | 78931619 | 78931764 | 78931619 | ID=Msa0789610-mRNA-1:cds;Parent=Msa0789610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
