AlfalfaGEDB | Msa0791530

M. sativa cultivar zhongmu-4 / Msa0791530

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0791530	XP_013468831.1	92.357	157	12	0	1	157	1	157	8.69e-102	298

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0791530	sp\|Q9FJK3\|AGL80_ARATH	46.753	154	79	3	1	152	1	153	7.32e-30	113

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0791530	A0A072VNB0	92.357	157	12	0	1	157	1	157	4.15e-102	298

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TFs/TRs:

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Gene ID	Type	Classification
Msa0791530	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0791530	MtrunA17_Chr1g0188681	92.357	157	12	0	1	157	1	157	7.99e-106	298
Msa0791530	MtrunA17_Chr1g0188661	75.796	157	38	0	1	157	1	157	1.76e-78	229
Msa0791530	MtrunA17_Chr5g0420351	69.872	156	47	0	1	156	1	156	4.72e-77	226
Msa0791530	MtrunA17_Chr7g0218151	74.522	157	40	0	1	157	1	157	4.56e-75	221
Msa0791530	MtrunA17_Chr4g0012761	72.611	157	43	0	1	157	1	157	4.86e-74	218
Msa0791530	MtrunA17_Chr1g0193311	70.513	156	46	0	1	156	1	156	2.25e-69	206
Msa0791530	MtrunA17_Chr1g0188651	70.701	157	44	1	1	157	1	155	7.33e-68	202
Msa0791530	MtrunA17_Chr1g0197461	57.516	153	65	0	3	155	2	154	1.16e-57	177
Msa0791530	MtrunA17_Chr1g0197321	55.128	156	69	1	1	155	1	156	1.18e-56	174
Msa0791530	MtrunA17_Chr1g0197261	54.839	155	70	0	1	155	1	155	6.86e-56	172

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0791530	AT5G26630.1	42.484	153	87	1	1	152	1	153	4.85e-32	114
Msa0791530	AT3G05860.2	40.940	149	87	1	1	148	1	149	5.05e-31	111
Msa0791530	AT5G48670.1	46.753	154	79	3	1	152	1	153	7.44e-31	113
Msa0791530	AT3G05860.3	40.940	149	87	1	1	148	1	149	3.62e-30	110
Msa0791530	AT3G05860.1	40.940	149	87	1	1	148	1	149	5.88e-30	109
Msa0791530	AT1G65330.1	38.776	147	89	1	3	148	2	148	5.09e-29	107
Msa0791530	AT1G65300.1	36.424	151	95	1	3	152	2	152	1.55e-28	106
Msa0791530	AT5G26650.1	36.667	150	94	1	4	152	2	151	1.45e-25	100
Msa0791530	AT5G27960.1	43.925	107	59	1	4	109	2	108	2.35e-24	96.3
Msa0791530	AT1G31630.1	30.323	155	106	2	3	156	2	155	2.42e-22	91.3

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Find 27 sgRNAs with CRISPR-Local

Find 30 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGGGTATCATTAAGA+AGG	0.475254	5_3:+2549776	Msa0791530:CDS
AAATCTAGAGGGAGCCATAC+AGG	0.466931	5_3:+2549881	Msa0791530:CDS
ACAGAATAATGAGAATGAGC+TGG	0.567812	5_3:+2550019	Msa0791530:CDS
ACCTCTGTTATAGAATCAAA+CGG	0.538136	5_3:-2549852	None:intergenic
AGAGAGCTCTCTATTCTTTG+TGG	0.458868	5_3:+2549801	Msa0791530:CDS
AGAGGTGTGGCCAAATCTAG+AGG	0.598360	5_3:+2549869	Msa0791530:CDS
AGCCTTTCTTGCCGAATCAT+TGG	0.368149	5_3:-2549739	None:intergenic
AGCTACAACAAGAGAAAGAA+GGG	0.560386	5_3:+2549762	Msa0791530:CDS
AGCTGGACATTCATATGGTT+AGG	0.635359	5_3:+2550036	Msa0791530:CDS
ATACCTCTCAATCACCTGTA+TGG	0.492173	5_3:-2549895	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTTATAGAATCAAACGGAT+TGG	-	chr5_3:2549850-2549869	None:intergenic	30.0%
ACCTCTGTTATAGAATCAAA+CGG	-	chr5_3:2549855-2549874	None:intergenic	30.0%
GCTAATTGAGAAAAAGATGA+AGG	+	chr5_3:2550121-2550140	Msa0791530:CDS	30.0%
GAAAAAGATGAAGGAAATTG+AGG	+	chr5_3:2550130-2550149	Msa0791530:CDS	30.0%
TAGCTACAACAAGAGAAAGA+AGG	+	chr5_3:2549761-2549780	Msa0791530:CDS	35.0%
AGCTACAACAAGAGAAAGAA+GGG	+	chr5_3:2549762-2549781	Msa0791530:CDS	35.0%
TCCGTTTGATTCTATAACAG+AGG	+	chr5_3:2549851-2549870	Msa0791530:CDS	35.0%
TTGATTCTATAACAGAGGTG+TGG	+	chr5_3:2549856-2549875	Msa0791530:CDS	35.0%
GCTGCAAAAGAAAACTTTCT+TGG	-	chr5_3:2549959-2549978	None:intergenic	35.0%
ACAGAATAATGAGAATGAGC+TGG	+	chr5_3:2550019-2550038	Msa0791530:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	2549705	2550178	2549705	ID=Msa0791530;Name=Msa0791530
chr5_3	mRNA	2549705	2550178	2549705	ID=Msa0791530-mRNA-1;Parent=Msa0791530;Name=Msa0791530-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|157
chr5_3	exon	2549705	2550178	2549705	ID=Msa0791530-mRNA-1:exon:1103;Parent=Msa0791530-mRNA-1
chr5_3	CDS	2549705	2550178	2549705	ID=Msa0791530-mRNA-1:cds;Parent=Msa0791530-mRNA-1

Gene Sequence

>Msa0791530

ATGACTAGGAAGAAGGTGAAACTTGCTTTTATCTCCAATGATTCGGCAAGAAAGGCTAGCTACAACAAGAGAAAGAAGGGTATCATTAAGAAGGTGAGAGAGCTCTCTATTCTTTGTGGTATTCCAGCCTGTGCTATAATTTCCAATCCGTTTGATTCTATAACAGAGGTGTGGCCAAATCTAGAGGGAGCCATACAGGTGATTGAGAGGTATCAAAATGCATATATCAAACACAAGAAAAATAATGTGAACCAAGAAAGTTTTCTTTTGCAGCAGATTACTAAAACCAGGGAACAACTAGAAAAGCAAAGACAACAGAATAATGAGAATGAGCTGGACATTCATATGGTTAGGCACTTGCAAAACCAAGAGTTGCCTGATGATTTGACTGTTACAGATTTAAGAGATTATGATAAGCTAATTGAGAAAAAGATGAAGGAAATTGAGGACAAGATTGTTGCACTCAGTTTATGA

Protein sequence

>Msa0791530

MTRKKVKLAFISNDSARKASYNKRKKGIIKKVRELSILCGIPACAIISNPFDSITEVWPNLEGAIQVIERYQNAYIKHKKNNVNQESFLLQQITKTREQLEKQRQQNNENELDIHMVRHLQNQELPDDLTVTDLRDYDKLIEKKMKEIEDKIVALSL*