AlfalfaGEDB | Msa0791810

M. sativa cultivar zhongmu-4 / Msa0791810

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0791810	PNY12437.1	73.723	274	72	0	1	274	1	274	3.03e-144	416

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0791810	sp\|Q8L3W1\|VRN1_ARATH	30.000	340	147	7	21	273	6	341	1.00e-39	144

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0791810	A0A2K3PAY3	73.723	274	72	0	1	274	1	274	1.45e-144	416

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TFs/TRs:

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Gene ID	Type	Classification
Msa0791810	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0791810	MtrunA17_Chr5g0429931	68.852	244	76	0	31	274	5	248	8.45e-121	345
Msa0791810	MtrunA17_Chr3g0077451	67.220	241	68	2	35	274	10	240	4.88e-113	325
Msa0791810	MtrunA17_Chr3g0077411	63.019	265	90	2	18	274	259	523	2.93e-109	325
Msa0791810	MtrunA17_Chr3g0077411	52.256	266	100	3	1	262	1	243	1.33e-81	254
Msa0791810	MtrunA17_Chr3g0077421	66.667	210	58	2	65	272	1	200	1.61e-96	282
Msa0791810	MtrunA17_Chr3g0077441	66.667	210	58	2	65	272	1	200	1.61e-96	282
Msa0791810	MtrunA17_Chr3g0077431	64.455	211	64	2	65	274	1	201	2.58e-92	271
Msa0791810	MtrunA17_Chr4g0009491	63.158	228	82	1	3	228	205	432	2.32e-90	274
Msa0791810	MtrunA17_Chr4g0009491	52.113	213	80	1	35	247	11	201	6.58e-63	204
Msa0791810	MtrunA17_Chr3g0077361	56.554	267	92	3	1	265	20	264	2.35e-89	274

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0791810	AT3G18990.1	30.000	340	147	7	21	273	6	341	1.02e-40	144
Msa0791810	AT3G18990.2	30.205	341	147	7	21	274	6	342	1.18e-40	144
Msa0791810	AT1G49475.1	37.302	126	74	2	4	129	21	141	7.19e-19	82.4
Msa0791810	AT4G01580.1	36.036	111	71	0	14	124	23	133	1.26e-18	82.0
Msa0791810	AT3G18960.2	36.036	111	71	0	14	124	23	133	1.51e-18	81.6
Msa0791810	AT3G18960.1	36.036	111	71	0	14	124	23	133	1.52e-18	82.0
Msa0791810	AT1G49480.3	33.083	133	79	4	147	273	98	226	5.54e-14	70.1
Msa0791810	AT1G49480.1	33.083	133	79	4	147	273	98	226	5.54e-14	70.1
Msa0791810	AT1G49480.2	33.083	133	79	4	147	273	98	226	5.54e-14	70.1
Msa0791810	AT3G18960.3	35.955	89	57	0	36	124	8	96	4.45e-13	66.2

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Find 53 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCTCATGGACAGCAA+TGG	0.519153	5_3:+2858612	Msa0791810:CDS
AAACAAAGTATCCTAGTCCT+AGG	0.485163	5_3:+2858292	Msa0791810:CDS
AAAGAAGCCGATTGTGCTAA+AGG	0.434126	5_3:+2858757	Msa0791810:CDS
AAATTCTCATGGACAGCAAT+GGG	0.472438	5_3:+2858613	Msa0791810:CDS
AAGTGAGAGCCGTGGGAAAA+AGG	0.303768	5_3:+2858335	Msa0791810:CDS
AATCTGCAATGAAGCCTCGC+CGG	0.581440	5_3:+2856926	None:intergenic
AATCTTGCGATAAACTCATT+TGG	0.373859	5_3:-2858012	None:intergenic
AATGAGTTTATCGCAAGATT+TGG	0.267691	5_3:+2858015	Msa0791810:CDS
AATTGCTAAGGCAAATCGAA+CGG	0.646365	5_3:+2858443	Msa0791810:CDS
ACCGAAACTTACTATTTGAG+TGG	0.604521	5_3:-2857028	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTGTATATTGTTGGACAATA+AGG	-	chr5_3:2857487-2857506	None:intergenic	30.0%
AATTTGAACTTAGAATTCGG+AGG	+	chr5_3:2857618-2857637	Msa0791810:intron	30.0%
ATCACCTTAGATTCAACATA+GGG	-	chr5_3:2857678-2857697	None:intergenic	30.0%
TTGTGGCTAAAAATCATGTT+TGG	+	chr5_3:2857777-2857796	Msa0791810:intron	30.0%
ACCAAACTTCAAAAGAGAAT+TGG	-	chr5_3:2857941-2857960	None:intergenic	30.0%
AATCTTGCGATAAACTCATT+TGG	-	chr5_3:2858015-2858034	None:intergenic	30.0%
AATGAGTTTATCGCAAGATT+TGG	+	chr5_3:2858015-2858034	Msa0791810:CDS	30.0%
ACTATTCAATAGGATATGGT+TGG	+	chr5_3:2858157-2858176	Msa0791810:CDS	30.0%
TTCAAAACTCTAAGTACTAG+TGG	+	chr5_3:2858261-2858280	Msa0791810:CDS	30.0%
GAACGAAAAAAAGGGTTTAT+TGG	-	chr5_3:2858420-2858439	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	2856934	2858814	2856934	ID=Msa0791810;Name=Msa0791810
chr5_3	mRNA	2856934	2858814	2856934	ID=Msa0791810-mRNA-1;Parent=Msa0791810;Name=Msa0791810-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0\|0\|0\|1\|1\|1\|3\|0\|274
chr5_3	exon	2856934	2857038	2856934	ID=Msa0791810-mRNA-1:exon:1189;Parent=Msa0791810-mRNA-1
chr5_3	exon	2858006	2858464	2858006	ID=Msa0791810-mRNA-1:exon:1190;Parent=Msa0791810-mRNA-1
chr5_3	exon	2858554	2858814	2858554	ID=Msa0791810-mRNA-1:exon:1191;Parent=Msa0791810-mRNA-1
chr5_3	CDS	2856934	2857038	2856934	ID=Msa0791810-mRNA-1:cds;Parent=Msa0791810-mRNA-1
chr5_3	CDS	2858006	2858464	2858006	ID=Msa0791810-mRNA-1:cds;Parent=Msa0791810-mRNA-1
chr5_3	CDS	2858554	2858814	2858554	ID=Msa0791810-mRNA-1:cds;Parent=Msa0791810-mRNA-1

Gene Sequence

>Msa0791810

ATGAAGCCTCGCCGGAGAAGACCTGTCCGGTCATTGGCGCCGGAGAACGTATCAAAACATTTTATGAAAGCCATACTTCCCTCACCCATTCATGCCACTCAAATAAGAATTCCAAATGAGTTTATCGCAAGATTTGGAAATGAACTCAAGAATGTTGCTACAATTACTGTTCCGGATGGTTGTATTTGGGAAATGGAACTGAAGAAATGCGGCAATGACGTTTTCTTTTGTAACAAATGGCAAGAGTTCATAGAATACTATTCAATAGGATATGGTTGGTACCTTTCTTTCAATTATGAAGGAAATTCAAAGTTTAGTGTTACTATAATTGATGTAACTTCTGTTGAGATTTGCTATCCGTTCAAAACTCTAAGTACTAGTGGAGAACCAAAAACAAAGTATCCTAGTCCTAGGAAAAGGTCCAAGGTTAAAACAAGTGAGAGCCGTGGGAAAAAGGACAAAAACATGTCTACGCGTGCTTCTAAAAAAGCAGAGAAGGCTGCCAATGAATTCAACCCAATAAACCCTTTTTTTCGTTCAAAAATTGCTAAGGCAAATCGAACGAGTGTTACTTCTAAATTTGCTCAAAAGTACCTGAAGCCAAATGTTCCTATCAAACTCCAAAATTCTCATGGACAGCAATGGGAAGTTTCTTGTGTATTTTGTAATGCCGAATCATTATCAATGCAAATGGCACGAGGATTTCCTAAATTTCAAAGGGCCAACAATCTGTCGCGTGGAGATTATTGTGCGTTTGAGCTGATAAAAAAGAAGCCGATTGTGCTAAAGGTCACAATGTTTCGTGTAGTTGATTATCTTGATTAA

Protein sequence

>Msa0791810

MKPRRRRPVRSLAPENVSKHFMKAILPSPIHATQIRIPNEFIARFGNELKNVATITVPDGCIWEMELKKCGNDVFFCNKWQEFIEYYSIGYGWYLSFNYEGNSKFSVTIIDVTSVEICYPFKTLSTSGEPKTKYPSPRKRSKVKTSESRGKKDKNMSTRASKKAEKAANEFNPINPFFRSKIAKANRTSVTSKFAQKYLKPNVPIKLQNSHGQQWEVSCVFCNAESLSMQMARGFPKFQRANNLSRGDYCAFELIKKKPIVLKVTMFRVVDYLD*