Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791900 | QSD99762.1 | 67.816 | 174 | 40 | 1 | 2 | 159 | 8 | 181 | 5.34e-75 | 234 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791900 | sp|Q8S9H7|DIV_ANTMA | 47.423 | 194 | 60 | 2 | 15 | 166 | 15 | 208 | 3.43e-56 | 181 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791900 | A0A1S2YLX7 | 62.562 | 203 | 33 | 3 | 7 | 166 | 14 | 216 | 1.47e-76 | 239 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0791900 | TF | MYB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791900 | MtrunA17_Chr7g0241761 | 55.882 | 204 | 46 | 5 | 4 | 166 | 16 | 216 | 4.43e-69 | 211 |
| Msa0791900 | MtrunA17_Chr5g0429521 | 51.269 | 197 | 54 | 4 | 4 | 161 | 10 | 203 | 2.24e-59 | 186 |
| Msa0791900 | MtrunA17_Chr3g0104071 | 48.131 | 214 | 60 | 5 | 4 | 166 | 10 | 223 | 6.16e-57 | 181 |
| Msa0791900 | MtrunA17_Chr5g0436501 | 51.309 | 191 | 56 | 5 | 12 | 166 | 14 | 203 | 6.07e-55 | 174 |
| Msa0791900 | MtrunA17_Chr1g0210471 | 39.766 | 171 | 67 | 2 | 24 | 158 | 22 | 192 | 3.78e-34 | 120 |
| Msa0791900 | MtrunA17_Chr8g0365011 | 36.686 | 169 | 71 | 4 | 24 | 157 | 6 | 173 | 7.54e-26 | 99.8 |
| Msa0791900 | MtrunA17_Chr1g0162081 | 75.806 | 62 | 15 | 0 | 97 | 158 | 129 | 190 | 4.16e-25 | 97.8 |
| Msa0791900 | MtrunA17_Chr4g0062741 | 70.968 | 62 | 18 | 0 | 97 | 158 | 145 | 206 | 1.96e-23 | 93.6 |
| Msa0791900 | MtrunA17_Chr6g0488471 | 67.241 | 58 | 19 | 0 | 97 | 154 | 104 | 161 | 8.22e-20 | 83.6 |
| Msa0791900 | MtrunA17_Chr2g0331031 | 62.712 | 59 | 22 | 0 | 97 | 155 | 116 | 174 | 1.26e-19 | 84.0 |
| Msa0791900 | MtrunA17_Chr4g0055931 | 57.576 | 66 | 28 | 0 | 97 | 162 | 102 | 167 | 3.63e-19 | 82.4 |
| Msa0791900 | MtrunA17_Chr8g0389241 | 65.517 | 58 | 19 | 1 | 97 | 154 | 112 | 168 | 4.73e-18 | 79.0 |
| Msa0791900 | MtrunA17_Chr5g0440741 | 57.143 | 63 | 24 | 1 | 97 | 156 | 107 | 169 | 1.10e-16 | 75.1 |
| Msa0791900 | MtrunA17_Chr3g0092621 | 59.322 | 59 | 24 | 0 | 97 | 155 | 91 | 149 | 1.14e-16 | 73.2 |
| Msa0791900 | MtrunA17_Chr5g0440731 | 57.143 | 63 | 24 | 1 | 97 | 156 | 112 | 174 | 1.39e-16 | 75.1 |
| Msa0791900 | MtrunA17_Chr5g0415191 | 57.353 | 68 | 29 | 0 | 97 | 164 | 109 | 176 | 5.36e-16 | 73.6 |
| Msa0791900 | MtrunA17_Chr8g0364731 | 63.333 | 60 | 20 | 1 | 100 | 157 | 11 | 70 | 1.14e-15 | 70.9 |
| Msa0791900 | MtrunA17_Chr5g0409841 | 54.839 | 62 | 26 | 1 | 97 | 156 | 99 | 160 | 1.85e-15 | 71.2 |
| Msa0791900 | MtrunA17_Chr1g0155181 | 50.000 | 58 | 29 | 0 | 24 | 81 | 5 | 62 | 4.28e-15 | 66.6 |
| Msa0791900 | MtrunA17_Chr3g0135671 | 72.093 | 43 | 12 | 0 | 97 | 139 | 98 | 140 | 4.67e-15 | 70.1 |
| Msa0791900 | MtrunA17_Chr3g0141601 | 51.724 | 58 | 28 | 0 | 24 | 81 | 5 | 62 | 6.22e-15 | 66.6 |
| Msa0791900 | MtrunA17_Chr6g0449111 | 45.455 | 66 | 36 | 0 | 20 | 85 | 4 | 69 | 1.04e-14 | 65.5 |
| Msa0791900 | MtrunA17_Chr4g0059701 | 72.500 | 40 | 11 | 0 | 97 | 136 | 91 | 130 | 2.87e-14 | 68.6 |
| Msa0791900 | MtrunA17_Chr5g0409831 | 52.308 | 65 | 28 | 1 | 97 | 158 | 84 | 148 | 3.73e-14 | 67.4 |
| Msa0791900 | MtrunA17_Chr8g0373131 | 50.000 | 62 | 30 | 1 | 24 | 85 | 3 | 63 | 4.47e-14 | 63.5 |
| Msa0791900 | MtrunA17_Chr8g0373111 | 50.000 | 62 | 30 | 1 | 24 | 85 | 3 | 63 | 4.50e-14 | 63.5 |
| Msa0791900 | MtrunA17_Chr8g0373121 | 50.000 | 62 | 30 | 1 | 24 | 85 | 3 | 63 | 4.50e-14 | 63.5 |
| Msa0791900 | MtrunA17_Chr3g0144631 | 51.786 | 56 | 27 | 0 | 26 | 81 | 16 | 71 | 7.94e-14 | 63.2 |
| Msa0791900 | MtrunA17_Chr6g0452791 | 52.727 | 55 | 26 | 0 | 83 | 137 | 73 | 127 | 9.74e-14 | 65.5 |
| Msa0791900 | MtrunA17_Chr5g0404301 | 43.077 | 65 | 36 | 1 | 23 | 87 | 1 | 64 | 1.01e-13 | 62.4 |
| Msa0791900 | MtrunA17_Chr5g0404101 | 49.123 | 57 | 29 | 0 | 25 | 81 | 18 | 74 | 2.01e-13 | 62.8 |
| Msa0791900 | MtrunA17_Chr7g0255841 | 53.448 | 58 | 27 | 0 | 28 | 85 | 14 | 71 | 3.37e-13 | 62.0 |
| Msa0791900 | MtrunA17_Chr8g0373101 | 43.750 | 64 | 35 | 1 | 24 | 87 | 3 | 65 | 3.69e-13 | 61.2 |
| Msa0791900 | MtrunA17_Chr3g0081631 | 49.180 | 61 | 30 | 1 | 26 | 85 | 10 | 70 | 1.69e-12 | 60.1 |
| Msa0791900 | MtrunA17_Chr3g0113121 | 48.571 | 70 | 29 | 1 | 97 | 159 | 102 | 171 | 5.01e-12 | 61.6 |
| Msa0791900 | MtrunA17_Chr1g0194071 | 48.438 | 64 | 32 | 1 | 21 | 83 | 6 | 69 | 7.61e-12 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791900 | AT2G38090.1 | 50.725 | 207 | 51 | 5 | 4 | 162 | 10 | 213 | 2.55e-62 | 194 |
| Msa0791900 | AT5G58900.1 | 47.368 | 209 | 60 | 4 | 6 | 164 | 7 | 215 | 1.41e-57 | 182 |
| Msa0791900 | AT3G11280.2 | 50.000 | 164 | 52 | 2 | 26 | 159 | 33 | 196 | 1.12e-47 | 155 |
| Msa0791900 | AT3G11280.1 | 50.000 | 164 | 52 | 2 | 26 | 159 | 33 | 196 | 1.12e-47 | 155 |
| Msa0791900 | AT5G05790.2 | 48.256 | 172 | 53 | 2 | 24 | 159 | 29 | 200 | 3.07e-47 | 155 |
| Msa0791900 | AT5G05790.1 | 48.256 | 172 | 53 | 2 | 24 | 159 | 29 | 200 | 3.07e-47 | 155 |
| Msa0791900 | AT5G01200.1 | 43.000 | 200 | 61 | 4 | 12 | 159 | 17 | 215 | 3.02e-45 | 149 |
| Msa0791900 | AT5G04760.1 | 38.788 | 165 | 70 | 2 | 24 | 158 | 4 | 167 | 2.14e-30 | 110 |
| Msa0791900 | AT5G23650.1 | 35.519 | 183 | 75 | 2 | 18 | 157 | 5 | 187 | 3.97e-26 | 101 |
| Msa0791900 | AT5G08520.1 | 74.194 | 62 | 16 | 0 | 97 | 158 | 125 | 186 | 2.96e-24 | 95.9 |
| Msa0791900 | AT1G49010.1 | 70.968 | 62 | 18 | 0 | 97 | 158 | 141 | 202 | 9.81e-24 | 95.1 |
| Msa0791900 | AT3G10580.2 | 36.076 | 158 | 74 | 5 | 23 | 156 | 5 | 159 | 1.23e-20 | 85.9 |
| Msa0791900 | AT3G10580.1 | 36.076 | 158 | 74 | 5 | 23 | 156 | 5 | 159 | 2.01e-20 | 85.5 |
| Msa0791900 | AT5G47390.1 | 67.241 | 58 | 19 | 0 | 97 | 154 | 103 | 160 | 4.02e-20 | 85.9 |
| Msa0791900 | AT5G61620.1 | 55.714 | 70 | 31 | 0 | 97 | 166 | 115 | 184 | 2.17e-18 | 80.5 |
| Msa0791900 | AT5G56840.1 | 72.093 | 43 | 12 | 0 | 97 | 139 | 98 | 140 | 3.16e-16 | 73.6 |
| Msa0791900 | AT4G09450.1 | 58.333 | 60 | 25 | 0 | 97 | 156 | 98 | 157 | 5.29e-16 | 72.4 |
| Msa0791900 | AT1G70000.1 | 67.797 | 59 | 19 | 0 | 97 | 155 | 105 | 163 | 7.73e-16 | 72.8 |
| Msa0791900 | AT1G70000.2 | 67.797 | 59 | 19 | 0 | 97 | 155 | 105 | 163 | 7.73e-16 | 72.8 |
| Msa0791900 | AT3G16350.1 | 75.610 | 41 | 10 | 0 | 97 | 137 | 144 | 184 | 1.86e-15 | 72.8 |
| Msa0791900 | AT1G75250.2 | 50.847 | 59 | 29 | 0 | 23 | 81 | 9 | 67 | 7.09e-15 | 67.0 |
| Msa0791900 | AT1G75250.1 | 50.847 | 59 | 29 | 0 | 23 | 81 | 9 | 67 | 1.10e-14 | 67.0 |
| Msa0791900 | AT1G19000.2 | 70.000 | 40 | 12 | 0 | 97 | 136 | 109 | 148 | 1.69e-14 | 69.7 |
| Msa0791900 | AT1G19000.1 | 70.000 | 40 | 12 | 0 | 97 | 136 | 109 | 148 | 1.69e-14 | 69.7 |
| Msa0791900 | AT4G39250.1 | 45.000 | 60 | 33 | 0 | 26 | 85 | 14 | 73 | 2.13e-13 | 63.2 |
| Msa0791900 | AT1G74840.2 | 67.500 | 40 | 13 | 0 | 97 | 136 | 103 | 142 | 1.10e-12 | 63.9 |
| Msa0791900 | AT1G74840.1 | 67.500 | 40 | 13 | 0 | 97 | 136 | 103 | 142 | 1.23e-12 | 64.3 |
| Msa0791900 | AT4G36570.1 | 58.140 | 43 | 18 | 0 | 26 | 68 | 12 | 54 | 3.63e-12 | 58.5 |
| Msa0791900 | AT3G10590.1 | 28.324 | 173 | 81 | 6 | 25 | 156 | 6 | 176 | 4.11e-12 | 62.0 |
| Msa0791900 | AT2G21650.1 | 43.333 | 60 | 34 | 0 | 26 | 85 | 14 | 73 | 4.24e-11 | 57.0 |
Find 28 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGTTAGTGTTATTGAATC+AGG | 0.205600 | 5_3:-2993485 | Msa0791900:CDS |
| TATTTCATTAGGCAACTTAA+TGG | 0.276277 | 5_3:-2992332 | Msa0791900:CDS |
| CGCTTTGGCTTTATATGATA+AGG | 0.327997 | 5_3:-2993597 | Msa0791900:CDS |
| AATTGATCCATCACATTCAT+AGG | 0.354115 | 5_3:-2992463 | Msa0791900:CDS |
| ATGCTCAAAAGTATTTCATT+AGG | 0.378742 | 5_3:-2992343 | Msa0791900:CDS |
| AGAAGTATAGTAAAGGAGAT+TGG | 0.394305 | 5_3:-2992421 | Msa0791900:CDS |
| CAAGTTGTTTGAGAACGCTT+TGG | 0.423370 | 5_3:-2993612 | Msa0791900:CDS |
| TTAGTGTCTTTAAATTTCAA+TGG | 0.434527 | 5_3:-2992496 | Msa0791900:intron |
| ACTCTCTTGGAGCCACCAAT+TGG | 0.444829 | 5_3:+2993667 | None:intergenic |
| GCTACCATCATCCAACGGTC+GGG | 0.445026 | 5_3:+2993569 | None:intergenic |
| ACATCACTAATAGTCTTACT+TGG | 0.467585 | 5_3:+2993536 | None:intergenic |
| CTACCATCATCCAACGGTCG+GGG | 0.477795 | 5_3:+2993570 | None:intergenic |
| TGCTACCATCATCCAACGGT+CGG | 0.501556 | 5_3:+2993568 | None:intergenic |
| CATTCATAGGAAATTTCTGA+TGG | 0.510294 | 5_3:-2992450 | Msa0791900:CDS |
| AAGTTAGTGTTATTGAATCA+GGG | 0.513183 | 5_3:-2993484 | Msa0791900:intron |
| CTTAATGGAGGGAAAGATAG+AGG | 0.518361 | 5_3:-2992317 | Msa0791900:CDS |
| GGTCTTAAGAAGTATAGTAA+AGG | 0.521901 | 5_3:-2992428 | Msa0791900:CDS |
| AGAGTAAAAGAATTACCAAA+TGG | 0.523493 | 5_3:-2993649 | Msa0791900:CDS |
| TCATTAGGCAACTTAATGGA+GGG | 0.542113 | 5_3:-2992328 | Msa0791900:CDS |
| GAAATTTCCTATGAATGTGA+TGG | 0.554971 | 5_3:+2992456 | None:intergenic |
| TTCATTAGGCAACTTAATGG+AGG | 0.557447 | 5_3:-2992329 | Msa0791900:CDS |
| GATTCACCATTGTGATGTCA+TGG | 0.574290 | 5_3:+2992282 | None:intergenic |
| GCATGACTTGCAACTTGTGT+AGG | 0.611090 | 5_3:+2992362 | None:intergenic |
| ATTCATAGGAAATTTCTGAT+GGG | 0.614650 | 5_3:-2992449 | Msa0791900:CDS |
| TTAACATGATGATAAGAACA+TGG | 0.648076 | 5_3:+2993695 | None:intergenic |
| TACCATCATCCAACGGTCGG+GGG | 0.662362 | 5_3:+2993571 | None:intergenic |
| TAGTATCCATGACATCACAA+TGG | 0.712288 | 5_3:-2992288 | Msa0791900:CDS |
| TTTCTGCTACCATCATCCAA+CGG | 0.713612 | 5_3:+2993564 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTTATATGTGTTAAT+CGG | - | chr5_3:2993029-2993048 | Msa0791900:intron | 10.0% |
| !! | AATTATTAATTACATTACAA+AGG | - | chr5_3:2993318-2993337 | Msa0791900:intron | 10.0% |
| !!! | TTAATTTTATATGTGTTAAT+CGG | - | chr5_3:2993029-2993048 | Msa0791900:intron | 10.0% |
| !! | AATTATTAATTACATTACAA+AGG | - | chr5_3:2993318-2993337 | Msa0791900:intron | 10.0% |
| !! | AATAATAGGAGTAAATTAAA+GGG | + | chr5_3:2992674-2992693 | None:intergenic | 15.0% |
| !! | AAATAATAGGAGTAAATTAA+AGG | + | chr5_3:2992675-2992694 | None:intergenic | 15.0% |
| !!! | TTAATTTACTCCTATTATTT+TGG | - | chr5_3:2992675-2992694 | Msa0791900:intron | 15.0% |
| !!! | TAATTTACTCCTATTATTTT+GGG | - | chr5_3:2992676-2992695 | Msa0791900:intron | 15.0% |
| !! | ATGATTTATGTAATTTATGA+TGG | + | chr5_3:2992978-2992997 | None:intergenic | 15.0% |
| !! | ATTCATAATATAAAATTGCT+TGG | - | chr5_3:2993199-2993218 | Msa0791900:intron | 15.0% |
| !! | TTGAAAAATTACATTGTAAT+AGG | + | chr5_3:2993271-2993290 | None:intergenic | 15.0% |
| !! | AATAATAGGAGTAAATTAAA+GGG | + | chr5_3:2992674-2992693 | None:intergenic | 15.0% |
| !! | AAATAATAGGAGTAAATTAA+AGG | + | chr5_3:2992675-2992694 | None:intergenic | 15.0% |
| !!! | TTAATTTACTCCTATTATTT+TGG | - | chr5_3:2992675-2992694 | Msa0791900:intron | 15.0% |
| !!! | TAATTTACTCCTATTATTTT+GGG | - | chr5_3:2992676-2992695 | Msa0791900:intron | 15.0% |
| !! | ATGATTTATGTAATTTATGA+TGG | + | chr5_3:2992978-2992997 | None:intergenic | 15.0% |
| !! | ATTCATAATATAAAATTGCT+TGG | - | chr5_3:2993199-2993218 | Msa0791900:intron | 15.0% |
| !! | TTGAAAAATTACATTGTAAT+AGG | + | chr5_3:2993271-2993290 | None:intergenic | 15.0% |
| !! | ATCATGTTAAAAATTCCAAT+TGG | - | chr5_3:2992281-2992300 | Msa0791900:CDS | 20.0% |
| !! | TGACTCAATCAATTTATTTA+AGG | - | chr5_3:2992833-2992852 | Msa0791900:intron | 20.0% |
| !! | TTATATTCATAGTCAAATTG+AGG | - | chr5_3:2993092-2993111 | Msa0791900:intron | 20.0% |
| !! | TATGCAATTGGTATAAAATA+AGG | - | chr5_3:2993379-2993398 | Msa0791900:intron | 20.0% |
| !! | TTAGTGTCTTTAAATTTCAA+TGG | - | chr5_3:2993467-2993486 | Msa0791900:intron | 20.0% |
| !! | ATCATGTTAAAAATTCCAAT+TGG | - | chr5_3:2992281-2992300 | Msa0791900:CDS | 20.0% |
| !! | TGACTCAATCAATTTATTTA+AGG | - | chr5_3:2992833-2992852 | Msa0791900:intron | 20.0% |
| !! | TTATATTCATAGTCAAATTG+AGG | - | chr5_3:2993092-2993111 | Msa0791900:intron | 20.0% |
| !! | TATGCAATTGGTATAAAATA+AGG | - | chr5_3:2993379-2993398 | Msa0791900:intron | 20.0% |
| !! | TTAGTGTCTTTAAATTTCAA+TGG | - | chr5_3:2993467-2993486 | Msa0791900:intron | 20.0% |
| ! | TTAACATGATGATAAGAACA+TGG | + | chr5_3:2992271-2992290 | None:intergenic | 25.0% |
| ! | ATGTTAAAAATTCCAATTGG+TGG | - | chr5_3:2992284-2992303 | Msa0791900:CDS | 25.0% |
| ! | AGAGTAAAAGAATTACCAAA+TGG | - | chr5_3:2992314-2992333 | Msa0791900:CDS | 25.0% |
| !! | AAGTTAGTGTTATTGAATCA+GGG | - | chr5_3:2992479-2992498 | Msa0791900:CDS | 25.0% |
| !!! | TACTACTAGTTCTATTACTT+TGG | - | chr5_3:2992525-2992544 | Msa0791900:intron | 25.0% |
| !! | TAGTTCTATTACTTTGGAAA+TGG | - | chr5_3:2992531-2992550 | Msa0791900:intron | 25.0% |
| !! | AGTTCTATTACTTTGGAAAT+GGG | - | chr5_3:2992532-2992551 | Msa0791900:intron | 25.0% |
| !! | AACCAATTTTATAGTGTCAA+TGG | - | chr5_3:2992582-2992601 | Msa0791900:intron | 25.0% |
| ! | TTCCATTGACACTATAAAAT+TGG | + | chr5_3:2992587-2992606 | None:intergenic | 25.0% |
| !! | TCAATCAATTTATTTAAGGC+TGG | - | chr5_3:2992837-2992856 | Msa0791900:intron | 25.0% |
| !!! | TGTAATTTATGATGGATGTA+GGG | + | chr5_3:2992970-2992989 | None:intergenic | 25.0% |
| !!! | ATGTAATTTATGATGGATGT+AGG | + | chr5_3:2992971-2992990 | None:intergenic | 25.0% |
| ! | ATTCATAGGAAATTTCTGAT+GGG | - | chr5_3:2993514-2993533 | Msa0791900:CDS | 25.0% |
| !!! | ATGCTCAAAAGTATTTCATT+AGG | - | chr5_3:2993620-2993639 | Msa0791900:CDS | 25.0% |
| ! | TATTTCATTAGGCAACTTAA+TGG | - | chr5_3:2993631-2993650 | Msa0791900:CDS | 25.0% |
| ! | TTAACATGATGATAAGAACA+TGG | + | chr5_3:2992271-2992290 | None:intergenic | 25.0% |
| ! | ATGTTAAAAATTCCAATTGG+TGG | - | chr5_3:2992284-2992303 | Msa0791900:CDS | 25.0% |
| ! | AGAGTAAAAGAATTACCAAA+TGG | - | chr5_3:2992314-2992333 | Msa0791900:CDS | 25.0% |
| !! | AAGTTAGTGTTATTGAATCA+GGG | - | chr5_3:2992479-2992498 | Msa0791900:CDS | 25.0% |
| !!! | TACTACTAGTTCTATTACTT+TGG | - | chr5_3:2992525-2992544 | Msa0791900:intron | 25.0% |
| !! | TAGTTCTATTACTTTGGAAA+TGG | - | chr5_3:2992531-2992550 | Msa0791900:intron | 25.0% |
| !! | AGTTCTATTACTTTGGAAAT+GGG | - | chr5_3:2992532-2992551 | Msa0791900:intron | 25.0% |
| !! | AACCAATTTTATAGTGTCAA+TGG | - | chr5_3:2992582-2992601 | Msa0791900:intron | 25.0% |
| ! | TTCCATTGACACTATAAAAT+TGG | + | chr5_3:2992587-2992606 | None:intergenic | 25.0% |
| !! | TCAATCAATTTATTTAAGGC+TGG | - | chr5_3:2992837-2992856 | Msa0791900:intron | 25.0% |
| !!! | TGTAATTTATGATGGATGTA+GGG | + | chr5_3:2992970-2992989 | None:intergenic | 25.0% |
| !!! | ATGTAATTTATGATGGATGT+AGG | + | chr5_3:2992971-2992990 | None:intergenic | 25.0% |
| ! | ATTCATAGGAAATTTCTGAT+GGG | - | chr5_3:2993514-2993533 | Msa0791900:CDS | 25.0% |
| !!! | ATGCTCAAAAGTATTTCATT+AGG | - | chr5_3:2993620-2993639 | Msa0791900:CDS | 25.0% |
| ! | TATTTCATTAGGCAACTTAA+TGG | - | chr5_3:2993631-2993650 | Msa0791900:CDS | 25.0% |
| ! | TGGTAATTCTTTTACTCTCT+TGG | + | chr5_3:2992312-2992331 | None:intergenic | 30.0% |
| !!! | GTTTTCTTCTAAAGTCCATT+TGG | + | chr5_3:2992332-2992351 | None:intergenic | 30.0% |
| ! | ACATCACTAATAGTCTTACT+TGG | + | chr5_3:2992430-2992449 | None:intergenic | 30.0% |
| ! | GAAGTTAGTGTTATTGAATC+AGG | - | chr5_3:2992478-2992497 | Msa0791900:CDS | 30.0% |
| TAGTAGTGTACATAGGAAAA+GGG | + | chr5_3:2992510-2992529 | None:intergenic | 30.0% | |
| ATTTGATTACCATATGCAAG+CGG | - | chr5_3:2992608-2992627 | Msa0791900:intron | 30.0% | |
| TGGAAGAAACCCAAAATAAT+AGG | + | chr5_3:2992688-2992707 | None:intergenic | 30.0% | |
| AATTAAGCAAGCAAAAAGCT+AGG | + | chr5_3:2992907-2992926 | None:intergenic | 30.0% | |
| TTTATACCAATTGCATACAG+TGG | + | chr5_3:2993376-2993395 | None:intergenic | 30.0% | |
| !! | GAGTTGCTAGTATGTTATTT+TGG | - | chr5_3:2993405-2993424 | Msa0791900:intron | 30.0% |
| AATTGATCCATCACATTCAT+AGG | - | chr5_3:2993500-2993519 | Msa0791900:CDS | 30.0% | |
| GAAATTTCCTATGAATGTGA+TGG | + | chr5_3:2993510-2993529 | None:intergenic | 30.0% | |
| CATTCATAGGAAATTTCTGA+TGG | - | chr5_3:2993513-2993532 | Msa0791900:CDS | 30.0% | |
| ! | GGTCTTAAGAAGTATAGTAA+AGG | - | chr5_3:2993535-2993554 | Msa0791900:CDS | 30.0% |
| ! | AGAAGTATAGTAAAGGAGAT+TGG | - | chr5_3:2993542-2993561 | Msa0791900:CDS | 30.0% |
| ! | TGGTAATTCTTTTACTCTCT+TGG | + | chr5_3:2992312-2992331 | None:intergenic | 30.0% |
| !!! | GTTTTCTTCTAAAGTCCATT+TGG | + | chr5_3:2992332-2992351 | None:intergenic | 30.0% |
| ! | ACATCACTAATAGTCTTACT+TGG | + | chr5_3:2992430-2992449 | None:intergenic | 30.0% |
| ! | GAAGTTAGTGTTATTGAATC+AGG | - | chr5_3:2992478-2992497 | Msa0791900:CDS | 30.0% |
| TAGTAGTGTACATAGGAAAA+GGG | + | chr5_3:2992510-2992529 | None:intergenic | 30.0% | |
| ATTTGATTACCATATGCAAG+CGG | - | chr5_3:2992608-2992627 | Msa0791900:intron | 30.0% | |
| TGGAAGAAACCCAAAATAAT+AGG | + | chr5_3:2992688-2992707 | None:intergenic | 30.0% | |
| AATTAAGCAAGCAAAAAGCT+AGG | + | chr5_3:2992907-2992926 | None:intergenic | 30.0% | |
| TTTATACCAATTGCATACAG+TGG | + | chr5_3:2993376-2993395 | None:intergenic | 30.0% | |
| !! | GAGTTGCTAGTATGTTATTT+TGG | - | chr5_3:2993405-2993424 | Msa0791900:intron | 30.0% |
| AATTGATCCATCACATTCAT+AGG | - | chr5_3:2993500-2993519 | Msa0791900:CDS | 30.0% | |
| GAAATTTCCTATGAATGTGA+TGG | + | chr5_3:2993510-2993529 | None:intergenic | 30.0% | |
| CATTCATAGGAAATTTCTGA+TGG | - | chr5_3:2993513-2993532 | Msa0791900:CDS | 30.0% | |
| ! | GGTCTTAAGAAGTATAGTAA+AGG | - | chr5_3:2993535-2993554 | Msa0791900:CDS | 30.0% |
| ! | AGAAGTATAGTAAAGGAGAT+TGG | - | chr5_3:2993542-2993561 | Msa0791900:CDS | 30.0% |
| !! | CGCTTTGGCTTTATATGATA+AGG | - | chr5_3:2992366-2992385 | Msa0791900:CDS | 35.0% |
| GTAGTAGTGTACATAGGAAA+AGG | + | chr5_3:2992511-2992530 | None:intergenic | 35.0% | |
| GAACTAGTAGTAGTGTACAT+AGG | + | chr5_3:2992517-2992536 | None:intergenic | 35.0% | |
| AGTAAATTAAAGGGTTGAGG+GGG | + | chr5_3:2992665-2992684 | None:intergenic | 35.0% | |
| GAGTAAATTAAAGGGTTGAG+GGG | + | chr5_3:2992666-2992685 | None:intergenic | 35.0% | |
| GGAGTAAATTAAAGGGTTGA+GGG | + | chr5_3:2992667-2992686 | None:intergenic | 35.0% | |
| AGGAGTAAATTAAAGGGTTG+AGG | + | chr5_3:2992668-2992687 | None:intergenic | 35.0% | |
| ATATTTAAGGGGGTTCAAGA+TGG | + | chr5_3:2992708-2992727 | None:intergenic | 35.0% | |
| CTTGAACCCCCTTAAATATA+AGG | - | chr5_3:2992709-2992728 | Msa0791900:intron | 35.0% | |
| ! | TGCAAGCCTTATATTTAAGG+GGG | + | chr5_3:2992718-2992737 | None:intergenic | 35.0% |
| ! | GTGCAAGCCTTATATTTAAG+GGG | + | chr5_3:2992719-2992738 | None:intergenic | 35.0% |
| ! | GGTGCAAGCCTTATATTTAA+GGG | + | chr5_3:2992720-2992739 | None:intergenic | 35.0% |
| ! | TGGTGCAAGCCTTATATTTA+AGG | + | chr5_3:2992721-2992740 | None:intergenic | 35.0% |
| GTTTACAAATGAGAGAGAGT+TGG | + | chr5_3:2992741-2992760 | None:intergenic | 35.0% | |
| AAACGTAAAGTTGCACACAT+TGG | - | chr5_3:2992757-2992776 | Msa0791900:intron | 35.0% | |
| GAGCATATTGTCTAATAACG+TGG | - | chr5_3:2992779-2992798 | Msa0791900:intron | 35.0% | |
| ! | TGGATGTAGGGCTAAATTTT+AGG | + | chr5_3:2992958-2992977 | None:intergenic | 35.0% |
| AATTGCTTGGATGACAATTG+TGG | - | chr5_3:2993212-2993231 | Msa0791900:intron | 35.0% | |
| ! | CTCATGATTTTGTGACAACA+AGG | - | chr5_3:2993575-2993594 | Msa0791900:CDS | 35.0% |
| TTCATTAGGCAACTTAATGG+AGG | - | chr5_3:2993634-2993653 | Msa0791900:CDS | 35.0% | |
| TCATTAGGCAACTTAATGGA+GGG | - | chr5_3:2993635-2993654 | Msa0791900:CDS | 35.0% | |
| TAGTATCCATGACATCACAA+TGG | - | chr5_3:2993675-2993694 | Msa0791900:CDS | 35.0% | |
| !! | CGCTTTGGCTTTATATGATA+AGG | - | chr5_3:2992366-2992385 | Msa0791900:CDS | 35.0% |
| GTAGTAGTGTACATAGGAAA+AGG | + | chr5_3:2992511-2992530 | None:intergenic | 35.0% | |
| GAACTAGTAGTAGTGTACAT+AGG | + | chr5_3:2992517-2992536 | None:intergenic | 35.0% | |
| AGTAAATTAAAGGGTTGAGG+GGG | + | chr5_3:2992665-2992684 | None:intergenic | 35.0% | |
| GAGTAAATTAAAGGGTTGAG+GGG | + | chr5_3:2992666-2992685 | None:intergenic | 35.0% | |
| GGAGTAAATTAAAGGGTTGA+GGG | + | chr5_3:2992667-2992686 | None:intergenic | 35.0% | |
| AGGAGTAAATTAAAGGGTTG+AGG | + | chr5_3:2992668-2992687 | None:intergenic | 35.0% | |
| ATATTTAAGGGGGTTCAAGA+TGG | + | chr5_3:2992708-2992727 | None:intergenic | 35.0% | |
| CTTGAACCCCCTTAAATATA+AGG | - | chr5_3:2992709-2992728 | Msa0791900:intron | 35.0% | |
| ! | TGCAAGCCTTATATTTAAGG+GGG | + | chr5_3:2992718-2992737 | None:intergenic | 35.0% |
| ! | GTGCAAGCCTTATATTTAAG+GGG | + | chr5_3:2992719-2992738 | None:intergenic | 35.0% |
| ! | GGTGCAAGCCTTATATTTAA+GGG | + | chr5_3:2992720-2992739 | None:intergenic | 35.0% |
| ! | TGGTGCAAGCCTTATATTTA+AGG | + | chr5_3:2992721-2992740 | None:intergenic | 35.0% |
| GTTTACAAATGAGAGAGAGT+TGG | + | chr5_3:2992741-2992760 | None:intergenic | 35.0% | |
| AAACGTAAAGTTGCACACAT+TGG | - | chr5_3:2992757-2992776 | Msa0791900:intron | 35.0% | |
| GAGCATATTGTCTAATAACG+TGG | - | chr5_3:2992779-2992798 | Msa0791900:intron | 35.0% | |
| ! | TGGATGTAGGGCTAAATTTT+AGG | + | chr5_3:2992958-2992977 | None:intergenic | 35.0% |
| AATTGCTTGGATGACAATTG+TGG | - | chr5_3:2993212-2993231 | Msa0791900:intron | 35.0% | |
| ! | CTCATGATTTTGTGACAACA+AGG | - | chr5_3:2993575-2993594 | Msa0791900:CDS | 35.0% |
| TTCATTAGGCAACTTAATGG+AGG | - | chr5_3:2993634-2993653 | Msa0791900:CDS | 35.0% | |
| TCATTAGGCAACTTAATGGA+GGG | - | chr5_3:2993635-2993654 | Msa0791900:CDS | 35.0% | |
| TAGTATCCATGACATCACAA+TGG | - | chr5_3:2993675-2993694 | Msa0791900:CDS | 35.0% | |
| CAAGTTGTTTGAGAACGCTT+TGG | - | chr5_3:2992351-2992370 | Msa0791900:CDS | 40.0% | |
| TTTCTGCTACCATCATCCAA+CGG | + | chr5_3:2992402-2992421 | None:intergenic | 40.0% | |
| AAGCAAGCAAAAAGCTAGGT+AGG | + | chr5_3:2992903-2992922 | None:intergenic | 40.0% | |
| TATGTTTGCCCAAAGACCAA+AGG | - | chr5_3:2993432-2993451 | Msa0791900:intron | 40.0% | |
| ATGTTTGCCCAAAGACCAAA+GGG | - | chr5_3:2993433-2993452 | Msa0791900:intron | 40.0% | |
| CTAAAAACCACAGTTCCCTT+TGG | + | chr5_3:2993451-2993470 | None:intergenic | 40.0% | |
| CTTAATGGAGGGAAAGATAG+AGG | - | chr5_3:2993646-2993665 | Msa0791900:CDS | 40.0% | |
| GATTCACCATTGTGATGTCA+TGG | + | chr5_3:2993684-2993703 | None:intergenic | 40.0% | |
| CAAGTTGTTTGAGAACGCTT+TGG | - | chr5_3:2992351-2992370 | Msa0791900:CDS | 40.0% | |
| TTTCTGCTACCATCATCCAA+CGG | + | chr5_3:2992402-2992421 | None:intergenic | 40.0% | |
| AAGCAAGCAAAAAGCTAGGT+AGG | + | chr5_3:2992903-2992922 | None:intergenic | 40.0% | |
| TATGTTTGCCCAAAGACCAA+AGG | - | chr5_3:2993432-2993451 | Msa0791900:intron | 40.0% | |
| ATGTTTGCCCAAAGACCAAA+GGG | - | chr5_3:2993433-2993452 | Msa0791900:intron | 40.0% | |
| CTAAAAACCACAGTTCCCTT+TGG | + | chr5_3:2993451-2993470 | None:intergenic | 40.0% | |
| CTTAATGGAGGGAAAGATAG+AGG | - | chr5_3:2993646-2993665 | Msa0791900:CDS | 40.0% | |
| GATTCACCATTGTGATGTCA+TGG | + | chr5_3:2993684-2993703 | None:intergenic | 40.0% | |
| ! | CACAGTTCCCTTTGGTCTTT+GGG | + | chr5_3:2993443-2993462 | None:intergenic | 45.0% |
| ! | GCATGACTTGCAACTTGTGT+AGG | + | chr5_3:2993604-2993623 | None:intergenic | 45.0% |
| ! | CACAGTTCCCTTTGGTCTTT+GGG | + | chr5_3:2993443-2993462 | None:intergenic | 45.0% |
| ! | GCATGACTTGCAACTTGTGT+AGG | + | chr5_3:2993604-2993623 | None:intergenic | 45.0% |
| !!! | ATTTTTCAAATATATTATTT+TGG | - | chr5_3:2993282-2993301 | Msa0791900:intron | 5.0% |
| !!! | ATTTTTCAAATATATTATTT+TGG | - | chr5_3:2993282-2993301 | Msa0791900:intron | 5.0% |
| ACTCTCTTGGAGCCACCAAT+TGG | + | chr5_3:2992299-2992318 | None:intergenic | 50.0% | |
| TGCTACCATCATCCAACGGT+CGG | + | chr5_3:2992398-2992417 | None:intergenic | 50.0% | |
| GCAACGCCACTGTATGCAAT+TGG | - | chr5_3:2993367-2993386 | Msa0791900:intron | 50.0% | |
| ! | CCACAGTTCCCTTTGGTCTT+TGG | + | chr5_3:2993444-2993463 | None:intergenic | 50.0% |
| CCAAAGACCAAAGGGAACTG+TGG | - | chr5_3:2993441-2993460 | Msa0791900:intron | 50.0% | |
| ACTCTCTTGGAGCCACCAAT+TGG | + | chr5_3:2992299-2992318 | None:intergenic | 50.0% | |
| TGCTACCATCATCCAACGGT+CGG | + | chr5_3:2992398-2992417 | None:intergenic | 50.0% | |
| GCAACGCCACTGTATGCAAT+TGG | - | chr5_3:2993367-2993386 | Msa0791900:intron | 50.0% | |
| ! | CCACAGTTCCCTTTGGTCTT+TGG | + | chr5_3:2993444-2993463 | None:intergenic | 50.0% |
| CCAAAGACCAAAGGGAACTG+TGG | - | chr5_3:2993441-2993460 | Msa0791900:intron | 50.0% | |
| TACCATCATCCAACGGTCGG+GGG | + | chr5_3:2992395-2992414 | None:intergenic | 55.0% | |
| CTACCATCATCCAACGGTCG+GGG | + | chr5_3:2992396-2992415 | None:intergenic | 55.0% | |
| GCTACCATCATCCAACGGTC+GGG | + | chr5_3:2992397-2992416 | None:intergenic | 55.0% | |
| ! | AAGCTGGCTCCGCTTGCATA+TGG | + | chr5_3:2992620-2992639 | None:intergenic | 55.0% |
| TGCATCCCCTGGATACAAGC+TGG | + | chr5_3:2992636-2992655 | None:intergenic | 55.0% | |
| TTGCATACAGTGGCGTTGCC+AGG | + | chr5_3:2993366-2993385 | None:intergenic | 55.0% | |
| TACCATCATCCAACGGTCGG+GGG | + | chr5_3:2992395-2992414 | None:intergenic | 55.0% | |
| CTACCATCATCCAACGGTCG+GGG | + | chr5_3:2992396-2992415 | None:intergenic | 55.0% | |
| GCTACCATCATCCAACGGTC+GGG | + | chr5_3:2992397-2992416 | None:intergenic | 55.0% | |
| ! | AAGCTGGCTCCGCTTGCATA+TGG | + | chr5_3:2992620-2992639 | None:intergenic | 55.0% |
| TGCATCCCCTGGATACAAGC+TGG | + | chr5_3:2992636-2992655 | None:intergenic | 55.0% | |
| TTGCATACAGTGGCGTTGCC+AGG | + | chr5_3:2993366-2993385 | None:intergenic | 55.0% | |
| ATAAGGACACCCCCGACCGT+TGG | - | chr5_3:2992383-2992402 | Msa0791900:CDS | 60.0% | |
| AGCGGAGCCAGCTTGTATCC+AGG | - | chr5_3:2992626-2992645 | Msa0791900:intron | 60.0% | |
| GCGGAGCCAGCTTGTATCCA+GGG | - | chr5_3:2992627-2992646 | Msa0791900:intron | 60.0% | |
| CGGAGCCAGCTTGTATCCAG+GGG | - | chr5_3:2992628-2992647 | Msa0791900:intron | 60.0% | |
| AGGTTTGAACCCCCTGACCC+AGG | - | chr5_3:2993338-2993357 | Msa0791900:intron | 60.0% | |
| GGTTTGAACCCCCTGACCCA+GGG | - | chr5_3:2993339-2993358 | Msa0791900:intron | 60.0% | |
| ATAAGGACACCCCCGACCGT+TGG | - | chr5_3:2992383-2992402 | Msa0791900:CDS | 60.0% | |
| AGCGGAGCCAGCTTGTATCC+AGG | - | chr5_3:2992626-2992645 | Msa0791900:intron | 60.0% | |
| GCGGAGCCAGCTTGTATCCA+GGG | - | chr5_3:2992627-2992646 | Msa0791900:intron | 60.0% | |
| CGGAGCCAGCTTGTATCCAG+GGG | - | chr5_3:2992628-2992647 | Msa0791900:intron | 60.0% | |
| AGGTTTGAACCCCCTGACCC+AGG | - | chr5_3:2993338-2993357 | Msa0791900:intron | 60.0% | |
| GGTTTGAACCCCCTGACCCA+GGG | - | chr5_3:2993339-2993358 | Msa0791900:intron | 60.0% | |
| CACCCCCGACCGTTGGATGA+TGG | - | chr5_3:2992390-2992409 | Msa0791900:CDS | 65.0% | |
| TTGCCAGGACCCTGGGTCAG+GGG | + | chr5_3:2993351-2993370 | None:intergenic | 65.0% | |
| GTTGCCAGGACCCTGGGTCA+GGG | + | chr5_3:2993352-2993371 | None:intergenic | 65.0% | |
| AGTGGCGTTGCCAGGACCCT+GGG | + | chr5_3:2993358-2993377 | None:intergenic | 65.0% | |
| CACCCCCGACCGTTGGATGA+TGG | - | chr5_3:2992390-2992409 | Msa0791900:CDS | 65.0% | |
| TTGCCAGGACCCTGGGTCAG+GGG | + | chr5_3:2993351-2993370 | None:intergenic | 65.0% | |
| GTTGCCAGGACCCTGGGTCA+GGG | + | chr5_3:2993352-2993371 | None:intergenic | 65.0% | |
| AGTGGCGTTGCCAGGACCCT+GGG | + | chr5_3:2993358-2993377 | None:intergenic | 65.0% | |
| GGGGGTTCAGCTGCATCCCC+TGG | + | chr5_3:2992647-2992666 | None:intergenic | 70.0% | |
| AACCCCCTGACCCAGGGTCC+TGG | - | chr5_3:2993345-2993364 | Msa0791900:intron | 70.0% | |
| TGCCAGGACCCTGGGTCAGG+GGG | + | chr5_3:2993350-2993369 | None:intergenic | 70.0% | |
| CGTTGCCAGGACCCTGGGTC+AGG | + | chr5_3:2993353-2993372 | None:intergenic | 70.0% | |
| CAGTGGCGTTGCCAGGACCC+TGG | + | chr5_3:2993359-2993378 | None:intergenic | 70.0% | |
| GGGGGTTCAGCTGCATCCCC+TGG | + | chr5_3:2992647-2992666 | None:intergenic | 70.0% | |
| AACCCCCTGACCCAGGGTCC+TGG | - | chr5_3:2993345-2993364 | Msa0791900:intron | 70.0% | |
| TGCCAGGACCCTGGGTCAGG+GGG | + | chr5_3:2993350-2993369 | None:intergenic | 70.0% | |
| CGTTGCCAGGACCCTGGGTC+AGG | + | chr5_3:2993353-2993372 | None:intergenic | 70.0% | |
| CAGTGGCGTTGCCAGGACCC+TGG | + | chr5_3:2993359-2993378 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 2992259 | 2993726 | 2992259 | ID=Msa0791900;Name=Msa0791900 |
| chr5_3 | mRNA | 2992259 | 2993726 | 2992259 | ID=Msa0791900-mRNA-1;Parent=Msa0791900;Name=Msa0791900-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0|1|0|0|2|0|166 |
| chr5_3 | exon | 2993485 | 2993726 | 2993485 | ID=Msa0791900-mRNA-1:exon:1330;Parent=Msa0791900-mRNA-1 |
| chr5_3 | exon | 2992259 | 2992514 | 2992259 | ID=Msa0791900-mRNA-1:exon:1329;Parent=Msa0791900-mRNA-1 |
| chr5_3 | CDS | 2993485 | 2993726 | 2993485 | ID=Msa0791900-mRNA-1:cds;Parent=Msa0791900-mRNA-1 |
| chr5_3 | CDS | 2992259 | 2992514 | 2992259 | ID=Msa0791900-mRNA-1:cds;Parent=Msa0791900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
