AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0792230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0792230 MtrunA17_Chr8g0366921 64.545 330 95 4 1 318 1 320 1.72e-90 281
Msa0792230 MtrunA17_Chr2g0289181 50.000 232 113 2 324 552 1 232 6.02e-67 216
Msa0792230 MtrunA17_Chr6g0470151 45.135 370 176 7 1 360 1 353 7.86e-61 205
Msa0792230 MtrunA17_Chr8g0368721 49.697 330 136 6 1 318 1 312 7.58e-46 163
Msa0792230 MtrunA17_Chr2g0293901 54.595 185 66 4 1 183 1 169 2.54e-33 126
Msa0792230 MtrunA17_Chr7g0266611 43.243 148 82 1 392 537 2 149 1.45e-30 117
Msa0792230 MtrunA17_Chr1g0202461 56.000 100 42 2 314 413 239 336 2.69e-28 116
Msa0792230 MtrunA17_Chr8g0348311 49.580 119 55 3 314 430 134 249 1.26e-25 108
Msa0792230 MtrunA17_Chr7g0248691 46.875 128 51 3 282 409 115 225 3.24e-23 100
Msa0792230 MtrunA17_Chr8g0387501 63.889 72 25 1 338 409 130 200 1.34e-22 97.8
Msa0792230 MtrunA17_Chr6g0470161 45.082 122 63 2 432 552 1 119 2.95e-22 92.4
Msa0792230 MtrunA17_Chr2g0284321 35.795 176 89 6 314 470 12 182 6.99e-19 85.5
Msa0792230 MtrunA17_Chr2g0293481 53.846 78 35 1 332 409 262 338 1.45e-18 88.6
Msa0792230 MtrunA17_Chr3g0079691 33.610 241 132 12 190 407 113 348 1.85e-18 89.4
Msa0792230 MtrunA17_Chr3g0079691 47.826 69 35 1 337 405 495 562 1.37e-13 73.9
Msa0792230 MtrunA17_Chr7g0249311 50.000 86 41 2 327 412 169 252 2.05e-18 89.0
Msa0792230 MtrunA17_Chr7g0249311 48.611 72 36 1 337 408 392 462 1.90e-14 76.3
Msa0792230 MtrunA17_Chr4g0053281 60.317 63 25 0 338 400 267 329 2.05e-18 86.7
Msa0792230 MtrunA17_Chr2g0319961 63.333 60 22 0 338 397 81 140 2.90e-18 84.7
Msa0792230 MtrunA17_Chr5g0401821 55.556 72 31 1 323 394 186 256 4.14e-18 84.7
Msa0792230 MtrunA17_Chr1g0184691 62.121 66 21 1 338 399 294 359 4.77e-18 85.9
Msa0792230 MtrunA17_Chr7g0249301 48.837 86 42 2 327 412 52 135 5.33e-18 86.3
Msa0792230 MtrunA17_Chr7g0249301 51.562 64 30 1 335 398 290 352 4.92e-13 70.9
Msa0792230 MtrunA17_Chr3g0139021 51.190 84 36 2 317 396 291 373 6.12e-18 86.3
Msa0792230 MtrunA17_Chr7g0228941 54.839 62 28 0 338 399 53 114 3.05e-17 78.2
Msa0792230 MtrunA17_Chr7g0263531 43.750 96 52 2 321 416 173 266 4.46e-17 84.0
Msa0792230 MtrunA17_Chr7g0263531 40.196 102 44 3 314 400 324 423 4.84e-14 74.3
Msa0792230 MtrunA17_Chr8g0379461 55.556 63 28 0 338 400 77 139 5.16e-17 80.9
Msa0792230 MtrunA17_Chr4g0071521 49.398 83 41 1 312 394 221 302 7.74e-17 81.6
Msa0792230 MtrunA17_Chr7g0218081 44.681 94 45 3 333 421 224 315 1.19e-16 83.2
Msa0792230 MtrunA17_Chr7g0218081 46.914 81 41 2 337 416 410 489 4.50e-15 78.2
Msa0792230 MtrunA17_Chr1g0147881 44.211 95 52 1 312 406 238 331 1.64e-16 81.3
Msa0792230 MtrunA17_Chr7g0243891 52.632 76 34 2 329 404 208 281 2.41e-16 82.0
Msa0792230 MtrunA17_Chr7g0243891 48.387 62 31 1 337 398 374 434 2.34e-11 66.2
Msa0792230 MtrunA17_Chr5g0447701 56.522 69 26 3 333 400 88 153 2.59e-16 81.3
Msa0792230 MtrunA17_Chr5g0447701 50.000 60 29 1 338 397 253 311 1.45e-11 66.6
Msa0792230 MtrunA17_Chr7g0270051 49.296 71 36 0 327 397 43 113 5.50e-16 78.2
Msa0792230 MtrunA17_Chr4g0074001 42.697 89 38 2 309 397 343 418 1.11e-15 80.1
Msa0792230 MtrunA17_Chr8g0366951 41.026 117 39 2 422 538 12 98 2.01e-15 72.8
Msa0792230 MtrunA17_Chr3g0106491 47.959 98 37 5 314 404 174 264 2.22e-15 79.0
Msa0792230 MtrunA17_Chr3g0106491 46.875 64 33 1 335 398 363 425 2.13e-11 66.2
Msa0792230 MtrunA17_Chr3g0101131 43.878 98 47 3 315 406 215 310 2.24e-14 76.3
Msa0792230 MtrunA17_Chr3g0101131 45.588 68 36 1 337 404 415 481 5.63e-13 71.6
Msa0792230 MtrunA17_Chr4g0042831 50.000 68 33 1 337 404 278 344 2.24e-14 75.1
Msa0792230 MtrunA17_Chr4g0042831 44.444 81 44 1 328 408 136 215 1.02e-13 73.2
Msa0792230 MtrunA17_Chr7g0266621 40.212 189 91 3 142 318 124 302 2.96e-14 73.9
Msa0792230 MtrunA17_Chr5g0418191 48.529 68 34 1 337 404 320 386 1.60e-13 72.8
Msa0792230 MtrunA17_Chr5g0418191 47.368 76 38 2 328 403 142 215 8.52e-13 70.5
Msa0792230 MtrunA17_Chr5g0443131 48.485 66 33 1 337 402 157 221 2.29e-13 71.2
Msa0792230 MtrunA17_Chr2g0294231 47.692 65 33 1 337 401 203 266 3.97e-13 71.2
Msa0792230 MtrunA17_Chr3g0128671 41.489 94 46 3 301 392 98 184 4.01e-13 70.5
Msa0792230 MtrunA17_Chr4g0004911 48.438 64 32 1 334 397 181 243 4.73e-13 71.6
Msa0792230 MtrunA17_Chr4g0004911 47.619 63 32 1 335 397 334 395 7.28e-12 67.8
Msa0792230 MtrunA17_Chr8g0387981 40.230 87 46 2 312 392 103 189 4.86e-13 70.9
Msa0792230 MtrunA17_Chr5g0445311 48.387 62 31 1 337 398 364 424 5.22e-13 71.6
Msa0792230 MtrunA17_Chr5g0445311 28.512 242 130 11 182 397 34 258 5.64e-12 68.2
Msa0792230 MtrunA17_Chr7g0238921 44.737 76 41 1 319 394 106 180 5.34e-13 70.1
Msa0792230 MtrunA17_Chr8g0347251 40.404 99 49 3 304 392 95 193 7.50e-13 70.1
Msa0792230 MtrunA17_Chr5g0432161 51.562 64 29 2 334 397 241 302 1.03e-12 70.9
Msa0792230 MtrunA17_Chr5g0432161 50.000 62 30 1 337 398 421 481 3.08e-12 69.3
Msa0792230 MtrunA17_Chr2g0302391 46.667 60 32 0 338 397 212 271 1.11e-12 70.1
Msa0792230 MtrunA17_Chr3g0099641 41.333 75 43 1 323 397 238 311 1.75e-12 69.7
Msa0792230 MtrunA17_Chr8g0335811 44.928 69 36 2 335 403 152 218 1.92e-12 67.0
Msa0792230 MtrunA17_Chr1g0194481 37.778 90 54 2 317 406 139 226 2.11e-12 68.6
Msa0792230 MtrunA17_Chr3g0126391 46.552 58 29 1 337 392 133 190 2.53e-12 68.6
Msa0792230 MtrunA17_Chr4g0051881 50.000 58 28 1 337 394 178 234 2.73e-12 68.2
Msa0792230 MtrunA17_Chr7g0270191 44.156 77 42 1 337 413 145 220 2.80e-12 67.8
Msa0792230 MtrunA17_Chr3g0129321 44.776 67 34 3 334 399 115 179 4.07e-12 65.9
Msa0792230 MtrunA17_Chr4g0068541 41.429 70 40 1 337 406 208 276 4.11e-12 68.2
Msa0792230 MtrunA17_Chr8g0383351 42.424 66 36 2 335 400 158 221 1.17e-11 65.1
Msa0792230 MtrunA17_Chr5g0418781 33.036 112 73 2 308 419 96 205 1.43e-11 65.5
Msa0792230 MtrunA17_Chr2g0333851 40.000 75 40 1 335 404 167 241 1.55e-11 65.9
Msa0792230 MtrunA17_Chr6g0485431 44.928 69 35 3 330 397 148 214 2.35e-11 65.5
Msa0792230 MtrunA17_Chr7g0270831 45.614 57 31 0 338 394 217 273 2.48e-11 65.9
Msa0792230 MtrunA17_Chr8g0383251 30.827 133 80 6 275 397 37 167 2.88e-11 62.8
Msa0792230 MtrunA17_Chr3g0129361 43.077 65 35 2 335 399 142 204 3.05e-11 63.5
Msa0792230 MtrunA17_Chr7g0248721 35.556 90 54 3 307 394 109 196 3.34e-11 63.2
Msa0792230 MtrunA17_Chr7g0224801 41.667 60 34 1 335 394 91 149 3.42e-11 62.0
Msa0792230 MtrunA17_Chr2g0288871 41.667 72 41 1 323 394 292 362 3.97e-11 65.9
Msa0792230 MtrunA17_Chr1g0150271 41.270 63 37 0 335 397 99 161 4.41e-11 63.5
Msa0792230 MtrunA17_Chr5g0432071 35.354 99 54 4 313 411 87 175 7.46e-11 62.0
Msa0792230 MtrunA17_Chr5g0428351 50.000 60 28 1 338 395 184 243 7.77e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0792230 AT4G01250.1 36.500 200 107 5 211 409 19 199 3.55e-24 103
Msa0792230 AT5G52830.1 53.535 99 44 2 314 412 143 239 7.22e-24 103
Msa0792230 AT4G23550.1 52.809 89 41 1 321 409 124 211 1.24e-22 99.4
Msa0792230 AT5G45050.4 51.282 78 38 0 317 394 1021 1098 2.08e-19 93.2
Msa0792230 AT5G45050.1 51.282 78 38 0 317 394 1160 1237 2.60e-19 92.8
Msa0792230 AT5G45050.2 51.282 78 38 0 317 394 1132 1209 2.97e-19 92.8
Msa0792230 AT4G24240.1 45.763 118 57 3 281 394 224 338 7.90e-19 88.6
Msa0792230 AT1G29280.1 56.716 67 29 0 338 404 75 141 2.01e-18 85.9
Msa0792230 AT4G31550.2 46.809 94 47 1 312 402 217 310 3.36e-18 86.3
Msa0792230 AT4G31550.1 58.462 65 27 0 338 402 247 311 5.57e-18 85.9
Msa0792230 AT2G23320.1 62.069 58 22 0 338 395 241 298 6.35e-18 85.5
Msa0792230 AT2G34830.1 49.398 83 41 1 324 406 202 283 1.01e-17 86.3
Msa0792230 AT2G34830.2 49.398 83 41 1 324 406 211 292 1.11e-17 86.3
Msa0792230 AT3G04670.1 62.712 59 22 0 338 396 263 321 1.30e-17 84.7
Msa0792230 AT3G58710.1 55.224 67 30 0 338 404 72 138 2.34e-17 82.8
Msa0792230 AT3G58710.2 55.224 67 30 0 338 404 71 137 2.53e-17 82.8
Msa0792230 AT5G28650.1 61.017 59 23 0 338 396 263 321 2.86e-17 83.6
Msa0792230 AT2G24570.1 47.826 92 47 1 305 396 212 302 4.05e-17 83.2
Msa0792230 AT3G01080.3 48.611 72 35 2 333 404 201 270 4.53e-17 82.8
Msa0792230 AT1G30650.1 49.398 83 41 1 324 406 204 285 5.77e-17 84.0
Msa0792230 AT3G01080.2 48.611 72 35 2 333 404 201 270 2.36e-16 82.0
Msa0792230 AT3G01080.2 50.820 61 29 1 337 397 344 403 2.37e-13 72.8
Msa0792230 AT3G01080.1 48.611 72 35 2 333 404 163 232 3.06e-16 81.6
Msa0792230 AT3G01080.1 50.820 61 29 1 337 397 306 365 3.14e-13 72.4
Msa0792230 AT4G26440.1 50.685 73 34 2 336 408 177 247 3.22e-16 82.4
Msa0792230 AT4G26440.1 31.111 180 95 7 335 497 370 537 2.58e-14 76.3
Msa0792230 AT2G37260.1 45.349 86 41 3 314 395 323 406 1.25e-15 79.7
Msa0792230 AT2G37260.1 50.746 67 31 2 332 398 160 224 1.03e-13 73.9
Msa0792230 AT2G30590.1 49.398 83 39 1 317 396 290 372 1.25e-15 79.3
Msa0792230 AT2G37260.3 45.349 86 41 3 314 395 243 326 1.72e-15 78.6
Msa0792230 AT2G37260.3 50.746 67 31 2 332 398 80 144 1.33e-13 72.8
Msa0792230 AT1G13960.1 50.000 72 34 2 333 404 225 294 1.74e-15 79.7
Msa0792230 AT1G13960.1 49.180 61 30 1 337 397 409 468 1.12e-12 70.9
Msa0792230 AT2G03340.1 50.000 78 36 3 332 409 245 319 1.81e-15 79.7
Msa0792230 AT2G03340.1 48.529 68 34 1 337 404 415 481 6.01e-14 75.1
Msa0792230 AT2G37260.2 45.349 86 41 3 314 395 241 324 1.82e-15 78.6
Msa0792230 AT2G37260.2 50.746 67 31 2 332 398 78 142 1.53e-13 72.8
Msa0792230 AT1G13960.2 50.000 72 34 2 333 404 72 141 3.25e-15 77.8
Msa0792230 AT1G13960.2 49.180 61 30 1 337 397 256 315 2.11e-12 69.3
Msa0792230 AT5G56270.1 51.429 70 32 2 336 405 272 339 6.11e-15 78.6
Msa0792230 AT5G56270.1 50.000 62 30 1 337 398 487 547 9.72e-13 71.6
Msa0792230 AT5G41570.1 40.000 85 48 2 312 394 71 154 6.88e-14 70.5
Msa0792230 AT5G07100.1 44.000 75 41 1 330 404 110 183 1.12e-13 72.4
Msa0792230 AT5G07100.1 44.118 68 37 1 335 402 232 298 5.36e-12 67.4
Msa0792230 AT1G64000.1 46.774 62 32 1 333 394 110 170 1.25e-13 70.1
Msa0792230 AT1G66550.2 54.386 57 24 1 338 392 104 160 1.72e-13 70.9
Msa0792230 AT2G38470.1 51.389 72 32 3 327 397 173 242 1.72e-13 73.6
Msa0792230 AT2G38470.1 44.578 83 42 3 337 419 362 440 3.65e-12 69.3
Msa0792230 AT1G66550.1 54.386 57 24 1 338 392 109 165 1.98e-13 70.9
Msa0792230 AT5G07100.2 36.207 116 63 3 332 439 19 131 2.47e-13 69.7
Msa0792230 AT5G07100.2 44.118 68 37 1 335 402 139 205 1.66e-11 64.7
Msa0792230 AT5G07100.4 36.207 116 63 3 332 439 19 131 2.47e-13 69.7
Msa0792230 AT5G07100.4 44.118 68 37 1 335 402 139 205 1.66e-11 64.7
Msa0792230 AT5G07100.5 36.207 116 63 3 332 439 19 131 2.47e-13 69.7
Msa0792230 AT5G07100.5 44.118 68 37 1 335 402 139 205 1.66e-11 64.7
Msa0792230 AT5G07100.3 36.207 116 63 3 332 439 19 131 2.47e-13 69.7
Msa0792230 AT5G07100.3 44.118 68 37 1 335 402 139 205 1.66e-11 64.7
Msa0792230 AT4G30935.1 43.056 72 40 1 326 397 320 390 3.23e-13 72.4
Msa0792230 AT2G47260.1 41.176 85 48 2 317 401 155 237 7.65e-13 70.5
Msa0792230 AT2G46130.1 46.667 60 31 1 335 394 28 86 8.69e-13 65.5
Msa0792230 AT5G43290.1 50.794 63 30 1 332 394 109 170 1.06e-12 68.9
Msa0792230 AT2G46400.1 39.604 101 55 3 301 395 64 164 1.37e-12 68.9
Msa0792230 AT5G22570.1 53.226 62 27 1 333 392 106 167 1.52e-12 68.9
Msa0792230 AT1G69310.4 40.230 87 50 2 308 394 119 203 2.08e-12 68.6
Msa0792230 AT1G69310.2 40.230 87 50 2 308 394 119 203 2.08e-12 68.6
Msa0792230 AT1G69310.1 40.230 87 50 2 308 394 119 203 2.08e-12 68.6
Msa0792230 AT4G26640.7 36.893 103 62 3 335 436 169 269 2.09e-12 70.1
Msa0792230 AT4G26640.7 44.118 68 37 1 337 404 341 407 4.64e-12 68.9
Msa0792230 AT2G30250.1 48.485 66 33 1 338 403 329 393 2.22e-12 69.3
Msa0792230 AT2G30250.1 45.455 77 39 3 321 397 151 224 2.51e-12 69.3
Msa0792230 AT4G39410.1 40.506 79 45 2 335 413 221 297 2.53e-12 68.6
Msa0792230 AT4G26640.2 36.893 103 62 3 335 436 209 309 2.62e-12 69.7
Msa0792230 AT4G26640.2 44.118 68 37 1 337 404 381 447 5.70e-12 68.9
Msa0792230 AT4G26640.1 36.893 103 62 3 335 436 137 237 2.86e-12 69.7
Msa0792230 AT4G26640.1 44.118 68 37 1 337 404 309 375 6.94e-12 68.2
Msa0792230 AT2G21900.1 48.387 62 31 1 337 398 109 169 3.90e-12 66.2
Msa0792230 AT5G45260.1 45.455 66 34 1 338 401 1209 1274 4.10e-12 69.7
Msa0792230 AT2G44745.1 46.667 60 31 1 335 394 143 201 4.32e-12 66.2
Msa0792230 AT4G26640.5 36.893 103 62 3 335 436 33 133 5.23e-12 68.2
Msa0792230 AT4G26640.5 44.118 68 37 1 337 404 205 271 1.14e-11 67.0
Msa0792230 AT4G26640.6 36.893 103 62 3 335 436 33 133 5.23e-12 68.2
Msa0792230 AT4G26640.6 44.118 68 37 1 337 404 205 271 1.14e-11 67.0
Msa0792230 AT4G26640.4 36.893 103 62 3 335 436 33 133 5.23e-12 68.2
Msa0792230 AT4G26640.4 44.118 68 37 1 337 404 205 271 1.14e-11 67.0
Msa0792230 AT4G26640.3 36.893 103 62 3 335 436 33 133 5.23e-12 68.2
Msa0792230 AT4G26640.3 44.118 68 37 1 337 404 205 271 1.14e-11 67.0
Msa0792230 AT2G04880.1 47.692 65 32 2 333 397 107 169 5.85e-12 68.6
Msa0792230 AT2G04880.1 50.000 60 29 1 338 397 308 366 9.57e-12 67.8
Msa0792230 AT2G04880.2 47.692 65 32 2 333 397 107 169 6.21e-12 68.6
Msa0792230 AT2G04880.2 50.000 60 29 1 338 397 284 342 9.73e-12 67.8
Msa0792230 AT5G64810.1 47.761 67 30 3 335 399 108 171 8.08e-12 65.1
Msa0792230 AT4G18170.1 40.698 86 49 2 317 402 153 236 8.20e-12 67.0
Msa0792230 AT4G23810.1 44.828 87 40 4 313 392 130 215 1.14e-11 66.6
Msa0792230 AT1G80840.1 38.462 78 47 1 335 412 144 220 1.40e-11 66.2
Msa0792230 AT1G55600.1 48.333 60 30 1 338 397 308 366 1.40e-11 67.4
Msa0792230 AT1G80590.1 43.678 87 41 3 338 416 86 172 1.41e-11 65.1
Msa0792230 AT5G01900.1 50.000 60 28 1 335 392 108 167 1.80e-11 65.1
Msa0792230 AT1G66560.1 50.000 58 27 1 337 392 103 160 1.81e-11 65.1
Msa0792230 AT4G11070.2 42.105 95 47 4 305 392 73 166 2.37e-11 65.1
Msa0792230 AT5G49520.1 46.552 58 30 1 337 394 221 277 2.42e-11 66.2
Msa0792230 AT2G40740.1 37.931 87 49 2 311 392 144 230 2.82e-11 65.1
Msa0792230 AT5G46350.1 41.772 79 44 2 323 401 170 246 2.88e-11 65.5
Msa0792230 AT4G11070.1 42.105 95 47 4 305 392 105 198 2.92e-11 65.5
Msa0792230 AT2G40740.3 37.931 87 49 2 311 392 153 239 3.16e-11 65.1
Msa0792230 AT4G22070.4 41.667 72 41 1 323 394 284 354 3.98e-11 66.2
Msa0792230 AT4G22070.3 41.667 72 41 1 323 394 284 354 3.98e-11 66.2
Msa0792230 AT4G22070.2 41.667 72 41 1 323 394 284 354 3.98e-11 66.2
Msa0792230 AT4G22070.1 41.667 72 41 1 323 394 284 354 3.98e-11 66.2
Msa0792230 AT1G66600.1 48.276 58 28 1 337 392 103 160 4.30e-11 63.9
Msa0792230 AT2G25000.2 36.145 83 48 1 320 397 81 163 4.65e-11 63.5
Msa0792230 AT2G25000.4 36.145 83 48 1 320 397 81 163 4.65e-11 63.5
Msa0792230 AT4G04450.2 37.500 88 51 1 338 421 199 286 4.85e-11 65.5
Msa0792230 AT2G25000.3 36.145 83 48 1 320 397 103 185 5.02e-11 63.5
Msa0792230 AT1G62300.1 45.614 57 31 0 338 394 313 369 5.82e-11 65.5
Msa0792230 AT5G24110.1 31.206 141 75 4 323 442 99 238 6.20e-11 64.3

Find 141 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCCAATTCTTCAATATTT+TGG 0.050319 5_3:-3364086 None:intergenic
GTCGATTTCACGTCGAAATT+TGG 0.080896 5_3:-3362508 None:intergenic
ATAAATTTCGCTTCTGTATA+CGG 0.189013 5_3:-3364186 None:intergenic
TTGGGTTTAAGTGGGGTAAT+TGG 0.221220 5_3:-3361904 None:intergenic
TGGATGTGAGGACCCTTTAA+TGG 0.244920 5_3:-3362881 None:intergenic
TCGATTTCACGTCGAAATTT+GGG 0.247314 5_3:-3362507 None:intergenic
TGGGGATTGTAGTATTATTC+TGG 0.273669 5_3:-3362488 None:intergenic
TCCCCAAAATATTGAAGAAT+TGG 0.278213 5_3:+3364083 Msa0792230:CDS
TGGGTTTAAGTGGGGTAATT+GGG 0.291623 5_3:-3361903 None:intergenic
CTTCATTGAACTAGACAAAT+TGG 0.302614 5_3:+3361930 Msa0792230:CDS
GTGCTCTCTATTCCATTAGT+TGG 0.318808 5_3:+3364298 Msa0792230:CDS
CTAGTTTGTGGTAGTTGAAT+TGG 0.323626 5_3:-3362576 None:intergenic
TTTAAGATATTGGTGGTAGT+AGG 0.329254 5_3:-3361988 None:intergenic
CAAAATTTAAATCAGGAAAA+AGG 0.334262 5_3:+3362634 Msa0792230:CDS
TCATGGAGATGGAGAAAATA+TGG 0.338703 5_3:+3362850 Msa0792230:CDS
TGCTCTCTATTCCATTAGTT+GGG 0.343239 5_3:+3364299 Msa0792230:CDS
GGTGGAGATGGGGATAGTGG+TGG 0.349627 5_3:-3362247 None:intergenic
ATGATTAACTCTAGTGCTAA+TGG 0.366249 5_3:+3362399 Msa0792230:CDS
GGAGATGGGGATAGTGGTGG+GGG 0.368068 5_3:-3362244 None:intergenic
TCATGGTGTTGGTTATTGGT+AGG 0.368208 5_3:-3361801 None:intergenic
TTATAGGACTAGTGGTGGTG+GGG 0.369329 5_3:-3362359 None:intergenic
GTCTAGTTCAATGAAGTCAT+TGG 0.370315 5_3:-3361923 None:intergenic
TTAAGATATTGGTGGTAGTA+GGG 0.370646 5_3:-3361987 None:intergenic
TTGGAGTTCCGATTATTTGC+TGG 0.372967 5_3:-3363841 None:intergenic
GTTGTGGTGGTAGGGATTAT+AGG 0.375777 5_3:-3362375 None:intergenic
ATGAAGTCATTGGGTTTAAG+TGG 0.379299 5_3:-3361913 None:intergenic
CACACATGGAAAACGATGAT+TGG 0.381264 5_3:+3361698 None:intergenic
ATAAGGTTTCAGAGGATTCA+TGG 0.385027 5_3:+3362833 Msa0792230:CDS
GGTCAACGCGGTGGGGATAA+TGG 0.386003 5_3:-3362028 None:intergenic
GGATGTGAGGACCCTTTAAT+GGG 0.387521 5_3:-3362880 None:intergenic
GTAGTTGATTGTGACTTCTC+TGG 0.387814 5_3:-3362554 None:intergenic
ACCCGAGCCTTGCTGCTCTC+TGG 0.394496 5_3:-3363985 None:intergenic
GATTGAAGGGTTTAAGATAT+TGG 0.394646 5_3:-3361998 None:intergenic
CATGGTGTTGGTTATTGGTA+GGG 0.397049 5_3:-3361800 None:intergenic
TTTGGGTCAAACCCAACTAA+TGG 0.398705 5_3:-3364310 None:intergenic
AGCTGCAACATTACCGCATT+AGG 0.400572 5_3:-3363955 None:intergenic
ACAATAAACCAGCAAATAAT+CGG 0.401514 5_3:+3363833 Msa0792230:CDS
GTGGAGATGGGGATAGTGGT+GGG 0.402347 5_3:-3362246 None:intergenic
TTGGTTATTGGTAGGGTTTG+AGG 0.409668 5_3:-3361793 None:intergenic
ATAATGGTGGTTGTGATTGA+AGG 0.411789 5_3:-3362012 None:intergenic
GATTATAGGACTAGTGGTGG+TGG 0.413064 5_3:-3362361 None:intergenic
AAACATGACACCTATGTTAG+AGG 0.415313 5_3:+3364242 Msa0792230:CDS
GGTAGTAGGGGTAGTGGAGT+TGG 0.420421 5_3:-3362280 None:intergenic
GCCAGAGAGCAGCAAGGCTC+GGG 0.426732 5_3:+3363984 Msa0792230:CDS
GGAATAGTGATGGTGGAGAT+GGG 0.428803 5_3:-3362258 None:intergenic
AAAGGTGATGGCAGTGGTGA+TGG 0.430730 5_3:-3362310 None:intergenic
AAATGATAATCAAGTATCAT+TGG 0.431401 5_3:+3362792 Msa0792230:CDS
GGGAATAGTGATGGTGGAGA+TGG 0.435104 5_3:-3362259 None:intergenic
GATGGTGGAGATGGGGATAG+TGG 0.437402 5_3:-3362250 None:intergenic
TTTCACAAACATCATAAACT+TGG 0.439399 5_3:+3363927 Msa0792230:CDS
AAGGTGATGGCAGTGGTGAT+GGG 0.441027 5_3:-3362309 None:intergenic
TAATCATGGTTGTGGTGGTA+GGG 0.441097 5_3:-3362383 None:intergenic
GTAGTAGGGGTAGTGGAGTT+GGG 0.441918 5_3:-3362279 None:intergenic
ACTTATGAAGTGACATATCT+AGG 0.442305 5_3:+3363799 Msa0792230:CDS
GAGTTTGTATCAACTGTTGA+TGG 0.448255 5_3:+3363892 Msa0792230:CDS
TCTAGTTCAATGAAGTCATT+GGG 0.450061 5_3:-3361922 None:intergenic
AACTGCAACATCATCATGTT+AGG 0.454150 5_3:-3364111 None:intergenic
TCTAACATAGGTGTCATGTT+TGG 0.456315 5_3:-3364240 None:intergenic
AAACGACCAAAATTTAAATC+AGG 0.456553 5_3:+3362627 Msa0792230:CDS
TGACTTCTCTGGAGTTGTTG+TGG 0.463915 5_3:-3362543 None:intergenic
ATTACCTGCCGAACAACAAC+AGG 0.466894 5_3:+3362455 Msa0792230:CDS
GGCTTGAACCTGTTGTTGTT+CGG 0.469350 5_3:-3362463 None:intergenic
TAAATTTCGCTTCTGTATAC+GGG 0.471681 5_3:-3364185 None:intergenic
AGGTGGAGTTTCAGAAATGA+TGG 0.474571 5_3:-3361773 None:intergenic
AGCCAGAGAGCAGCAAGGCT+CGG 0.475353 5_3:+3363983 Msa0792230:CDS
ACACATGGAAAACGATGATT+GGG 0.477527 5_3:+3361699 None:intergenic
GGTAATGGTAGTAGGGGTAG+TGG 0.478553 5_3:-3362286 None:intergenic
GATTGTAGTATTATTCTGGT+TGG 0.480965 5_3:-3362484 None:intergenic
AGCAAGGCTCGGGTTCTTGT+TGG 0.483467 5_3:+3363994 Msa0792230:CDS
GTATCATTGGTGAGCTATGT+GGG 0.490327 5_3:+3362805 Msa0792230:CDS
GGTGGGGAAAATGGTTGTGG+TGG 0.491264 5_3:-3362049 None:intergenic
TGAACCTGTTGTTGTTCGGC+AGG 0.492305 5_3:-3362459 None:intergenic
GTTGTGGTGGTCAACGCGGT+GGG 0.494214 5_3:-3362036 None:intergenic
GTTGTTGTTCAACGTGTGTT+GGG 0.495648 5_3:-3362167 None:intergenic
ATTATAGGACTAGTGGTGGT+GGG 0.498019 5_3:-3362360 None:intergenic
TTAATCATGGTTGTGGTGGT+AGG 0.500138 5_3:-3362384 None:intergenic
GTTGTTGTGGAACTAATTCA+TGG 0.500678 5_3:-3362530 None:intergenic
TATAGGACTAGTGGTGGTGG+GGG 0.501201 5_3:-3362358 None:intergenic
ACTTAGTCCTTTACCTACAC+TGG 0.501454 5_3:+3364047 Msa0792230:CDS
TAAGATATTGGTGGTAGTAG+GGG 0.506890 5_3:-3361986 None:intergenic
GATATTGGTGGTAGTAGGGG+TGG 0.517928 5_3:-3361983 None:intergenic
ATTAGCACTAGAGTTAATCA+TGG 0.521704 5_3:-3362397 None:intergenic
TGGAGATGGGGATAGTGGTG+GGG 0.522513 5_3:-3362245 None:intergenic
TGAAGTCATTGGGTTTAAGT+GGG 0.523364 5_3:-3361912 None:intergenic
TCTAGCTCAGTGAACTCACT+TGG 0.527705 5_3:-3362198 None:intergenic
TTCACAAACATCATAAACTT+GGG 0.528355 5_3:+3363928 Msa0792230:CDS
GCTTTGCCCAGTGTAGGTAA+AGG 0.528650 5_3:-3364054 None:intergenic
TGTTGTTGTTCAACGTGTGT+TGG 0.529404 5_3:-3362168 None:intergenic
GAGATGGGGATAGTGGTGGG+GGG 0.531742 5_3:-3362243 None:intergenic
GTTATTGGTAGGGTTTGAGG+TGG 0.532101 5_3:-3361790 None:intergenic
ACTCCAATGTCGGTAGCTCT+CGG 0.533519 5_3:+3363857 Msa0792230:CDS
TTTCAGAGGATTCATGGAGA+TGG 0.534538 5_3:+3362839 Msa0792230:CDS
TAATGGTGGTTGTGATTGAA+GGG 0.538754 5_3:-3362011 None:intergenic
GGGGTGTTGATAGTTGTTGG+GGG 0.540872 5_3:-3362339 None:intergenic
CTTAGTCCTTTACCTACACT+GGG 0.545206 5_3:+3364048 Msa0792230:CDS
CGATTTCACGTCGAAATTTG+GGG 0.547197 5_3:-3362506 None:intergenic
GGTTGTGGTGGTCAACGCGG+TGG 0.551592 5_3:-3362037 None:intergenic
ACTAGAGTTAATCATGGTTG+TGG 0.553627 5_3:-3362391 None:intergenic
AGTAGGTGTAGTAATGGTCG+AGG 0.558267 5_3:-3362073 None:intergenic
AAAGATCTAAAACTAGTTTG+TGG 0.559260 5_3:-3362588 None:intergenic
AGTATCATTGGTGAGCTATG+TGG 0.560291 5_3:+3362804 Msa0792230:CDS
GGTGATGGCAGTGGTGATGG+GGG 0.562066 5_3:-3362307 None:intergenic
ACTAGTGTTAGTGATGGTAT+TGG 0.562993 5_3:-3362106 None:intergenic
AGGTGATGGCAGTGGTGATG+GGG 0.563860 5_3:-3362308 None:intergenic
AATGATGGCAGGAGTAGTAA+AGG 0.565313 5_3:-3361758 None:intergenic
GTAAAATCATCATAGCAATA+CGG 0.572394 5_3:-3361856 None:intergenic
TTAAAGGGTCCTCACATCCA+AGG 0.572922 5_3:+3362884 Msa0792230:CDS
TTGTTTAGCAAGAAAACAAG+TGG 0.573603 5_3:+3363753 Msa0792230:CDS
TGAAGGGTTTAAGATATTGG+TGG 0.581318 5_3:-3361995 None:intergenic
GGAGTTTCAGAAATGATGGC+AGG 0.585934 5_3:-3361769 None:intergenic
AGTGGAGTTGGGAATAGTGA+TGG 0.587083 5_3:-3362268 None:intergenic
GAATAGTGATGGTGGAGATG+GGG 0.587695 5_3:-3362257 None:intergenic
GATGGCAGGAGTAGTAAAGG+TGG 0.594280 5_3:-3361755 None:intergenic
ATATTGGTGGTAGTAGGGGT+GGG 0.594975 5_3:-3361982 None:intergenic
AATGAGAAATCAGAAACGGC+GGG 0.597213 5_3:-3362435 None:intergenic
GTACCGAGAGCTACCGACAT+TGG 0.603992 5_3:-3363860 None:intergenic
GGAGTTGGGAATAGTGATGG+TGG 0.605137 5_3:-3362265 None:intergenic
TCAACAGTTGATACAAACTC+TGG 0.605581 5_3:-3363889 None:intergenic
ATGAAAACTAGTGTTAGTGA+TGG 0.606015 5_3:-3362112 None:intergenic
GATATGAGTAGGTGTAGTAA+TGG 0.607202 5_3:-3362079 None:intergenic
GTATTGGTGGTGATATGAGT+AGG 0.607640 5_3:-3362090 None:intergenic
TGTACTAAAGGTGATGGCAG+TGG 0.608456 5_3:-3362316 None:intergenic
AGTTCACTGAGCTAGAACAA+TGG 0.612785 5_3:+3362205 Msa0792230:CDS
AGTGTTAGTGATGGTATTGG+TGG 0.615093 5_3:-3362103 None:intergenic
AGAGTTAATCATGGTTGTGG+TGG 0.615137 5_3:-3362388 None:intergenic
GTAGGTGTAGTAATGGTCGA+GGG 0.624066 5_3:-3362072 None:intergenic
AGGTAATGAGAAATCAGAAA+CGG 0.625218 5_3:-3362439 None:intergenic
GAAGTCATTGGGTTTAAGTG+GGG 0.626876 5_3:-3361911 None:intergenic
AAACTTGGGTTCTCCTAATG+CGG 0.633652 5_3:+3363942 Msa0792230:CDS
GGTAGGGATTATAGGACTAG+TGG 0.644053 5_3:-3362367 None:intergenic
TTGTGGTGGTCAACGCGGTG+GGG 0.645732 5_3:-3362035 None:intergenic
CAACGCGGTGGGGATAATGG+TGG 0.646185 5_3:-3362025 None:intergenic
TATCATTGGTGAGCTATGTG+GGG 0.653483 5_3:+3362806 Msa0792230:CDS
AATAATCGGAACTCCAATGT+CGG 0.657205 5_3:+3363847 Msa0792230:CDS
TAATGAGAAATCAGAAACGG+CGG 0.658115 5_3:-3362436 None:intergenic
ATCATTGGTGAGCTATGTGG+GGG 0.659269 5_3:+3362807 Msa0792230:CDS
TAGGTGTAGTAATGGTCGAG+GGG 0.662277 5_3:-3362071 None:intergenic
AGGGATTATAGGACTAGTGG+TGG 0.676672 5_3:-3362364 None:intergenic
TGATCAGCCAGAGAGCAGCA+AGG 0.680979 5_3:+3363978 Msa0792230:CDS
AATGGTTGTGGTGGTCAACG+CGG 0.682395 5_3:-3362040 None:intergenic
AGGTGTAGTAATGGTCGAGG+GGG 0.695973 5_3:-3362070 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAAAAATATATATTTAT+AGG + chr5_3:3363438-3363457 Msa0792230:intron 0.0%
!! TTAATATTGAATAAATTTGT+GGG - chr5_3:3363254-3363273 None:intergenic 10.0%
!! AATTTATTCAATATTAACAT+TGG + chr5_3:3363257-3363276 Msa0792230:intron 10.0%
!! AAAAATCACTATAAATATAA+GGG - chr5_3:3363514-3363533 None:intergenic 10.0%
!! TAAAAATCACTATAAATATA+AGG - chr5_3:3363515-3363534 None:intergenic 10.0%
!! ATATAAACACATATTTATAT+AGG - chr5_3:3363613-3363632 None:intergenic 10.0%
!!! TTTTTTCTATAAGAAAAGAA+AGG - chr5_3:3362775-3362794 None:intergenic 15.0%
!! GTTAATATTGAATAAATTTG+TGG - chr5_3:3363255-3363274 None:intergenic 15.0%
!!! AATATACCACTTTTTTATTT+CGG - chr5_3:3363379-3363398 None:intergenic 15.0%
!!! CTTTTTCCTGATTTAAATTT+TGG - chr5_3:3362636-3362655 None:intergenic 20.0%
!! CAAAATTTAAATCAGGAAAA+AGG + chr5_3:3362634-3362653 Msa0792230:CDS 20.0%
!!! AAGAAAGGTAAAATGATTTT+AGG - chr5_3:3362760-3362779 None:intergenic 20.0%
!! AAATGATAATCAAGTATCAT+TGG + chr5_3:3362792-3362811 Msa0792230:CDS 20.0%
!! GCATTTAAATGAGAAAAATA+TGG + chr5_3:3363002-3363021 Msa0792230:intron 20.0%
!! AACAAAACAAAAAATCAAAG+AGG - chr5_3:3363182-3363201 None:intergenic 20.0%
!! AGGATTATAGAAAAAAGATA+GGG - chr5_3:3363214-3363233 None:intergenic 20.0%
!! AAGGATTATAGAAAAAAGAT+AGG - chr5_3:3363215-3363234 None:intergenic 20.0%
!!! TATCTTTTTTCTATAATCCT+TGG + chr5_3:3363214-3363233 Msa0792230:intron 20.0%
!! ATGTTCCATATGAATAAATT+TGG + chr5_3:3363327-3363346 Msa0792230:intron 20.0%
!! ATATGTGTTTATATGACTTT+AGG + chr5_3:3363619-3363638 Msa0792230:intron 20.0%
!!! ATCCAATTCTTCAATATTTT+GGG - chr5_3:3364088-3364107 None:intergenic 20.0%
!!! AATCCAATTCTTCAATATTT+TGG - chr5_3:3364089-3364108 None:intergenic 20.0%
!! AGATTCATATGAAAAAACAT+TGG - chr5_3:3364160-3364179 None:intergenic 20.0%
! GTAAAATCATCATAGCAATA+CGG - chr5_3:3361859-3361878 None:intergenic 25.0%
!! AAAGATCTAAAACTAGTTTG+TGG - chr5_3:3362591-3362610 None:intergenic 25.0%
!!! GATTTAAATTTTGGTCGTTT+TGG - chr5_3:3362627-3362646 None:intergenic 25.0%
! AAACGACCAAAATTTAAATC+AGG + chr5_3:3362627-3362646 Msa0792230:CDS 25.0%
!!! TAAAATGATTTTAGGTCACA+AGG - chr5_3:3362752-3362771 None:intergenic 25.0%
!! TTTTGAATGCTTAAAAACCT+TGG - chr5_3:3362904-3362923 None:intergenic 25.0%
! AACAAATCTTTCACTTATTG+TGG + chr5_3:3363549-3363568 Msa0792230:intron 25.0%
! CAAGTGGAAAAAATAAAAGA+TGG + chr5_3:3363769-3363788 Msa0792230:CDS 25.0%
! ACAATAAACCAGCAAATAAT+CGG + chr5_3:3363833-3363852 Msa0792230:CDS 25.0%
! TTTCACAAACATCATAAACT+TGG + chr5_3:3363927-3363946 Msa0792230:CDS 25.0%
! TTCACAAACATCATAAACTT+GGG + chr5_3:3363928-3363947 Msa0792230:CDS 25.0%
!!! TAAGTTCAGTTTTTAGATCA+GGG - chr5_3:3364032-3364051 None:intergenic 25.0%
!! TCCAATTCTTCAATATTTTG+GGG - chr5_3:3364087-3364106 None:intergenic 25.0%
! ATAAATTTCGCTTCTGTATA+CGG - chr5_3:3364189-3364208 None:intergenic 25.0%
! AAAAAGAATTCCTCTAACAT+AGG - chr5_3:3364255-3364274 None:intergenic 25.0%
!! TATGTTAGAGGAATTCTTTT+TGG + chr5_3:3364254-3364273 Msa0792230:CDS 25.0%
!!! TTTTTCATGGTGTTGGTTAT+TGG - chr5_3:3361808-3361827 None:intergenic 30.0%
!!! GATGTTATTTTTCATGGTGT+TGG - chr5_3:3361815-3361834 None:intergenic 30.0%
!!! GGATGTGATGTTATTTTTCA+TGG - chr5_3:3361821-3361840 None:intergenic 30.0%
!!! TGGGATTGTGTTATTTTCTT+GGG - chr5_3:3361887-3361906 None:intergenic 30.0%
!!! TTGGGATTGTGTTATTTTCT+TGG - chr5_3:3361888-3361907 None:intergenic 30.0%
! TCTAGTTCAATGAAGTCATT+GGG - chr5_3:3361925-3361944 None:intergenic 30.0%
CTTCATTGAACTAGACAAAT+TGG + chr5_3:3361930-3361949 Msa0792230:CDS 30.0%
! GGGTATAATTTTTGTTGGAT+TGG - chr5_3:3361965-3361984 None:intergenic 30.0%
! TTAAGATATTGGTGGTAGTA+GGG - chr5_3:3361990-3362009 None:intergenic 30.0%
! TTTAAGATATTGGTGGTAGT+AGG - chr5_3:3361991-3362010 None:intergenic 30.0%
! GATTGAAGGGTTTAAGATAT+TGG - chr5_3:3362001-3362020 None:intergenic 30.0%
ATGAAAACTAGTGTTAGTGA+TGG - chr5_3:3362115-3362134 None:intergenic 30.0%
!!! ATCACTAACACTAGTTTTCA+TGG + chr5_3:3362114-3362133 Msa0792230:CDS 30.0%
ATTAGCACTAGAGTTAATCA+TGG - chr5_3:3362400-3362419 None:intergenic 30.0%
ATGATTAACTCTAGTGCTAA+TGG + chr5_3:3362399-3362418 Msa0792230:CDS 30.0%
AGGTAATGAGAAATCAGAAA+CGG - chr5_3:3362442-3362461 None:intergenic 30.0%
GATTGTAGTATTATTCTGGT+TGG - chr5_3:3362487-3362506 None:intergenic 30.0%
TATGGACAAAAACCCATTAA+AGG + chr5_3:3362868-3362887 Msa0792230:CDS 30.0%
ATGGACAAAAACCCATTAAA+GGG + chr5_3:3362869-3362888 Msa0792230:CDS 30.0%
TAAATGCAACTCTTTGCAAT+GGG - chr5_3:3362989-3363008 None:intergenic 30.0%
TTAAATGCAACTCTTTGCAA+TGG - chr5_3:3362990-3363009 None:intergenic 30.0%
TCCATATGAATAAATTTGGC+AGG + chr5_3:3363331-3363350 Msa0792230:intron 30.0%
TCCTGCCAAATTTATTCATA+TGG - chr5_3:3363335-3363354 None:intergenic 30.0%
ATCTTTCACTTATTGTGGTA+CGG + chr5_3:3363554-3363573 Msa0792230:intron 30.0%
! TTTTCTTGCTAAACAATCAC+TGG - chr5_3:3363749-3363768 None:intergenic 30.0%
TTGTTTAGCAAGAAAACAAG+TGG + chr5_3:3363753-3363772 Msa0792230:CDS 30.0%
ACTTATGAAGTGACATATCT+AGG + chr5_3:3363799-3363818 Msa0792230:CDS 30.0%
!! CTAAGTTCAGTTTTTAGATC+AGG - chr5_3:3364033-3364052 None:intergenic 30.0%
TCCCCAAAATATTGAAGAAT+TGG + chr5_3:3364083-3364102 Msa0792230:CDS 30.0%
TAAATTTCGCTTCTGTATAC+GGG - chr5_3:3364188-3364207 None:intergenic 30.0%
!!! AATACGGTGTTGTGTTTTGA+GGG - chr5_3:3361843-3361862 None:intergenic 35.0%
TGAAGTCATTGGGTTTAAGT+GGG - chr5_3:3361915-3361934 None:intergenic 35.0%
ATGAAGTCATTGGGTTTAAG+TGG - chr5_3:3361916-3361935 None:intergenic 35.0%
! GTCTAGTTCAATGAAGTCAT+TGG - chr5_3:3361926-3361945 None:intergenic 35.0%
! TAAGATATTGGTGGTAGTAG+GGG - chr5_3:3361989-3362008 None:intergenic 35.0%
! TGAAGGGTTTAAGATATTGG+TGG - chr5_3:3361998-3362017 None:intergenic 35.0%
TAATGGTGGTTGTGATTGAA+GGG - chr5_3:3362014-3362033 None:intergenic 35.0%
ATAATGGTGGTTGTGATTGA+AGG - chr5_3:3362015-3362034 None:intergenic 35.0%
GATATGAGTAGGTGTAGTAA+TGG - chr5_3:3362082-3362101 None:intergenic 35.0%
ACTAGTGTTAGTGATGGTAT+TGG - chr5_3:3362109-3362128 None:intergenic 35.0%
ACTAGAGTTAATCATGGTTG+TGG - chr5_3:3362394-3362413 None:intergenic 35.0%
TAATGAGAAATCAGAAACGG+CGG - chr5_3:3362439-3362458 None:intergenic 35.0%
TGGGGATTGTAGTATTATTC+TGG - chr5_3:3362491-3362510 None:intergenic 35.0%
TCGATTTCACGTCGAAATTT+GGG - chr5_3:3362510-3362529 None:intergenic 35.0%
GTTGTTGTGGAACTAATTCA+TGG - chr5_3:3362533-3362552 None:intergenic 35.0%
! CTAGTTTGTGGTAGTTGAAT+TGG - chr5_3:3362579-3362598 None:intergenic 35.0%
!!! GGTCGTTTTGGTTTTGTATT+TGG - chr5_3:3362615-3362634 None:intergenic 35.0%
ATAAGGTTTCAGAGGATTCA+TGG + chr5_3:3362833-3362852 Msa0792230:CDS 35.0%
TCATGGAGATGGAGAAAATA+TGG + chr5_3:3362850-3362869 Msa0792230:CDS 35.0%
! CTAATTAAAACCCTTGGTGT+GGG - chr5_3:3362961-3362980 None:intergenic 35.0%
ACTAATTAAAACCCTTGGTG+TGG - chr5_3:3362962-3362981 None:intergenic 35.0%
!!! ACACCAAGGGTTTTAATTAG+TGG + chr5_3:3362961-3362980 Msa0792230:intron 35.0%
GAACCACTAATTAAAACCCT+TGG - chr5_3:3362967-3362986 None:intergenic 35.0%
GGGAACTAAAAGAAATACCA+AGG - chr5_3:3363234-3363253 None:intergenic 35.0%
CAGAGACCGAAATAAAAAAG+TGG + chr5_3:3363370-3363389 Msa0792230:intron 35.0%
AATAATCGGAACTCCAATGT+CGG + chr5_3:3363847-3363866 Msa0792230:CDS 35.0%
! TCAACAGTTGATACAAACTC+TGG - chr5_3:3363892-3363911 None:intergenic 35.0%
GAGTTTGTATCAACTGTTGA+TGG + chr5_3:3363892-3363911 Msa0792230:CDS 35.0%
AACTGCAACATCATCATGTT+AGG - chr5_3:3364114-3364133 None:intergenic 35.0%
! TCTAACATAGGTGTCATGTT+TGG - chr5_3:3364243-3364262 None:intergenic 35.0%
AAACATGACACCTATGTTAG+AGG + chr5_3:3364242-3364261 Msa0792230:CDS 35.0%
TGCTCTCTATTCCATTAGTT+GGG + chr5_3:3364299-3364318 Msa0792230:CDS 35.0%
AATGATGGCAGGAGTAGTAA+AGG - chr5_3:3361761-3361780 None:intergenic 40.0%
AGGTGGAGTTTCAGAAATGA+TGG - chr5_3:3361776-3361795 None:intergenic 40.0%
TTGGTTATTGGTAGGGTTTG+AGG - chr5_3:3361796-3361815 None:intergenic 40.0%
!! CATGGTGTTGGTTATTGGTA+GGG - chr5_3:3361803-3361822 None:intergenic 40.0%
!! TCATGGTGTTGGTTATTGGT+AGG - chr5_3:3361804-3361823 None:intergenic 40.0%
!!! ATACGGTGTTGTGTTTTGAG+GGG - chr5_3:3361842-3361861 None:intergenic 40.0%
!!! CAATACGGTGTTGTGTTTTG+AGG - chr5_3:3361844-3361863 None:intergenic 40.0%
TGGGTTTAAGTGGGGTAATT+GGG - chr5_3:3361906-3361925 None:intergenic 40.0%
TTGGGTTTAAGTGGGGTAAT+TGG - chr5_3:3361907-3361926 None:intergenic 40.0%
GAAGTCATTGGGTTTAAGTG+GGG - chr5_3:3361914-3361933 None:intergenic 40.0%
! GGGGTGGGTATAATTTTTGT+TGG - chr5_3:3361970-3361989 None:intergenic 40.0%
!! GTATTGGTGGTGATATGAGT+AGG - chr5_3:3362093-3362112 None:intergenic 40.0%
! AGTGTTAGTGATGGTATTGG+TGG - chr5_3:3362106-3362125 None:intergenic 40.0%
! GTTGTTGTTCAACGTGTGTT+GGG - chr5_3:3362170-3362189 None:intergenic 40.0%
! TGTTGTTGTTCAACGTGTGT+TGG - chr5_3:3362171-3362190 None:intergenic 40.0%
AGTTCACTGAGCTAGAACAA+TGG + chr5_3:3362205-3362224 Msa0792230:CDS 40.0%
! ATTATAGGACTAGTGGTGGT+GGG - chr5_3:3362363-3362382 None:intergenic 40.0%
TAATCATGGTTGTGGTGGTA+GGG - chr5_3:3362386-3362405 None:intergenic 40.0%
TTAATCATGGTTGTGGTGGT+AGG - chr5_3:3362387-3362406 None:intergenic 40.0%
AGAGTTAATCATGGTTGTGG+TGG - chr5_3:3362391-3362410 None:intergenic 40.0%
AATGAGAAATCAGAAACGGC+GGG - chr5_3:3362438-3362457 None:intergenic 40.0%
CGATTTCACGTCGAAATTTG+GGG - chr5_3:3362509-3362528 None:intergenic 40.0%
! GTCGATTTCACGTCGAAATT+TGG - chr5_3:3362511-3362530 None:intergenic 40.0%
GTAGTTGATTGTGACTTCTC+TGG - chr5_3:3362557-3362576 None:intergenic 40.0%
AGTATCATTGGTGAGCTATG+TGG + chr5_3:3362804-3362823 Msa0792230:CDS 40.0%
GTATCATTGGTGAGCTATGT+GGG + chr5_3:3362805-3362824 Msa0792230:CDS 40.0%
TATCATTGGTGAGCTATGTG+GGG + chr5_3:3362806-3362825 Msa0792230:CDS 40.0%
TTTCAGAGGATTCATGGAGA+TGG + chr5_3:3362839-3362858 Msa0792230:CDS 40.0%
GCTTAAAAACCTTGGATGTG+AGG - chr5_3:3362896-3362915 None:intergenic 40.0%
TTGGAGTTCCGATTATTTGC+TGG - chr5_3:3363844-3363863 None:intergenic 40.0%
AAACTTGGGTTCTCCTAATG+CGG + chr5_3:3363942-3363961 Msa0792230:CDS 40.0%
ACTTAGTCCTTTACCTACAC+TGG + chr5_3:3364047-3364066 Msa0792230:CDS 40.0%
CTTAGTCCTTTACCTACACT+GGG + chr5_3:3364048-3364067 Msa0792230:CDS 40.0%
GTGCTCTCTATTCCATTAGT+TGG + chr5_3:3364298-3364317 Msa0792230:CDS 40.0%
GGAGTTTCAGAAATGATGGC+AGG - chr5_3:3361772-3361791 None:intergenic 45.0%
GTTATTGGTAGGGTTTGAGG+TGG - chr5_3:3361793-3361812 None:intergenic 45.0%
! ATATTGGTGGTAGTAGGGGT+GGG - chr5_3:3361985-3362004 None:intergenic 45.0%
TAGGTGTAGTAATGGTCGAG+GGG - chr5_3:3362074-3362093 None:intergenic 45.0%
GTAGGTGTAGTAATGGTCGA+GGG - chr5_3:3362075-3362094 None:intergenic 45.0%
AGTAGGTGTAGTAATGGTCG+AGG - chr5_3:3362076-3362095 None:intergenic 45.0%
! TCTAGCTCAGTGAACTCACT+TGG - chr5_3:3362201-3362220 None:intergenic 45.0%
!! GAATAGTGATGGTGGAGATG+GGG - chr5_3:3362260-3362279 None:intergenic 45.0%
!! GGAATAGTGATGGTGGAGAT+GGG - chr5_3:3362261-3362280 None:intergenic 45.0%
AGTGGAGTTGGGAATAGTGA+TGG - chr5_3:3362271-3362290 None:intergenic 45.0%
! TGATGGGGGTAATGGTAGTA+GGG - chr5_3:3362296-3362315 None:intergenic 45.0%
! TGTACTAAAGGTGATGGCAG+TGG - chr5_3:3362319-3362338 None:intergenic 45.0%
! AGTTGTTGGGGGTGTACTAA+AGG - chr5_3:3362331-3362350 None:intergenic 45.0%
!! TGGGGGTGTTGATAGTTGTT+GGG - chr5_3:3362344-3362363 None:intergenic 45.0%
! TTATAGGACTAGTGGTGGTG+GGG - chr5_3:3362362-3362381 None:intergenic 45.0%
! GATTATAGGACTAGTGGTGG+TGG - chr5_3:3362364-3362383 None:intergenic 45.0%
! AGGGATTATAGGACTAGTGG+TGG - chr5_3:3362367-3362386 None:intergenic 45.0%
GGTAGGGATTATAGGACTAG+TGG - chr5_3:3362370-3362389 None:intergenic 45.0%
GTTGTGGTGGTAGGGATTAT+AGG - chr5_3:3362378-3362397 None:intergenic 45.0%
ATTACCTGCCGAACAACAAC+AGG + chr5_3:3362455-3362474 Msa0792230:CDS 45.0%
! GGCTTGAACCTGTTGTTGTT+CGG - chr5_3:3362466-3362485 None:intergenic 45.0%
!! TGACTTCTCTGGAGTTGTTG+TGG - chr5_3:3362546-3362565 None:intergenic 45.0%
ATCATTGGTGAGCTATGTGG+GGG + chr5_3:3362807-3362826 Msa0792230:CDS 45.0%
GGATGTGAGGACCCTTTAAT+GGG - chr5_3:3362883-3362902 None:intergenic 45.0%
TGGATGTGAGGACCCTTTAA+TGG - chr5_3:3362884-3362903 None:intergenic 45.0%
TTAAAGGGTCCTCACATCCA+AGG + chr5_3:3362884-3362903 Msa0792230:CDS 45.0%
TAATACACACACCCACACCA+AGG + chr5_3:3362947-3362966 Msa0792230:intron 45.0%
AATACACACACCCACACCAA+GGG + chr5_3:3362948-3362967 Msa0792230:intron 45.0%
CACTTATTGTGGTACGGAGT+TGG + chr5_3:3363560-3363579 Msa0792230:intron 45.0%
AGCTGCAACATTACCGCATT+AGG - chr5_3:3363958-3363977 None:intergenic 45.0%
! GATTTTGCTTTGCCCAGTGT+AGG - chr5_3:3364063-3364082 None:intergenic 45.0%
!! TGTAAAATATATTAAATAAT+AGG - chr5_3:3362673-3362692 None:intergenic 5.0%
GATGGCAGGAGTAGTAAAGG+TGG - chr5_3:3361758-3361777 None:intergenic 50.0%
! GATATTGGTGGTAGTAGGGG+TGG - chr5_3:3361986-3362005 None:intergenic 50.0%
AATGGTTGTGGTGGTCAACG+CGG - chr5_3:3362043-3362062 None:intergenic 50.0%
AGGTGTAGTAATGGTCGAGG+GGG - chr5_3:3362073-3362092 None:intergenic 50.0%
! TAGTGGTGGGGGGATTGAAT+TGG - chr5_3:3362236-3362255 None:intergenic 50.0%
!! GGGAATAGTGATGGTGGAGA+TGG - chr5_3:3362262-3362281 None:intergenic 50.0%
GGAGTTGGGAATAGTGATGG+TGG - chr5_3:3362268-3362287 None:intergenic 50.0%
!! GTAGTAGGGGTAGTGGAGTT+GGG - chr5_3:3362282-3362301 None:intergenic 50.0%
! GGTAATGGTAGTAGGGGTAG+TGG - chr5_3:3362289-3362308 None:intergenic 50.0%
! GATGGGGGTAATGGTAGTAG+GGG - chr5_3:3362295-3362314 None:intergenic 50.0%
! GTGATGGGGGTAATGGTAGT+AGG - chr5_3:3362297-3362316 None:intergenic 50.0%
! AAGGTGATGGCAGTGGTGAT+GGG - chr5_3:3362312-3362331 None:intergenic 50.0%
! AAAGGTGATGGCAGTGGTGA+TGG - chr5_3:3362313-3362332 None:intergenic 50.0%
! TGGGGGTGTACTAAAGGTGA+TGG - chr5_3:3362325-3362344 None:intergenic 50.0%
!! GGGGTGTTGATAGTTGTTGG+GGG - chr5_3:3362342-3362361 None:intergenic 50.0%
!! GGGGGTGTTGATAGTTGTTG+GGG - chr5_3:3362343-3362362 None:intergenic 50.0%
!! GTGGGGGTGTTGATAGTTGT+TGG - chr5_3:3362345-3362364 None:intergenic 50.0%
!! TATAGGACTAGTGGTGGTGG+GGG - chr5_3:3362361-3362380 None:intergenic 50.0%
! TGAACCTGTTGTTGTTCGGC+AGG - chr5_3:3362462-3362481 None:intergenic 50.0%
ACTCCAATGTCGGTAGCTCT+CGG + chr5_3:3363857-3363876 Msa0792230:CDS 50.0%
GCTTTGCCCAGTGTAGGTAA+AGG - chr5_3:3364057-3364076 None:intergenic 50.0%
GGTGGGGAAAATGGTTGTGG+TGG - chr5_3:3362052-3362071 None:intergenic 55.0%
TAGTAATGGTCGAGGGGGTG+GGG - chr5_3:3362068-3362087 None:intergenic 55.0%
GTAGTAATGGTCGAGGGGGT+GGG - chr5_3:3362069-3362088 None:intergenic 55.0%
TGTAGTAATGGTCGAGGGGG+TGG - chr5_3:3362070-3362089 None:intergenic 55.0%
! TGGAGATGGGGATAGTGGTG+GGG - chr5_3:3362248-3362267 None:intergenic 55.0%
! GTGGAGATGGGGATAGTGGT+GGG - chr5_3:3362249-3362268 None:intergenic 55.0%
!! GATGGTGGAGATGGGGATAG+TGG - chr5_3:3362253-3362272 None:intergenic 55.0%
!! GGTAGTAGGGGTAGTGGAGT+TGG - chr5_3:3362283-3362302 None:intergenic 55.0%
! AGGTGATGGCAGTGGTGATG+GGG - chr5_3:3362311-3362330 None:intergenic 55.0%
GAGCTATGTGGGGGCAGATA+AGG + chr5_3:3362816-3362835 Msa0792230:CDS 55.0%
GGGGGCAGATAAGGTTTCAG+AGG + chr5_3:3362825-3362844 Msa0792230:CDS 55.0%
GTACCGAGAGCTACCGACAT+TGG - chr5_3:3363863-3363882 None:intergenic 55.0%
TGATCAGCCAGAGAGCAGCA+AGG + chr5_3:3363978-3363997 Msa0792230:CDS 55.0%
AGCAAGGCTCGGGTTCTTGT+TGG + chr5_3:3363994-3364013 Msa0792230:CDS 55.0%
! CAACGCGGTGGGGATAATGG+TGG - chr5_3:3362028-3362047 None:intergenic 60.0%
GGTCAACGCGGTGGGGATAA+TGG - chr5_3:3362031-3362050 None:intergenic 60.0%
TTGTGGTGGTCAACGCGGTG+GGG - chr5_3:3362038-3362057 None:intergenic 60.0%
GTTGTGGTGGTCAACGCGGT+GGG - chr5_3:3362039-3362058 None:intergenic 60.0%
GGGGGTGGGGAAAATGGTTG+TGG - chr5_3:3362055-3362074 None:intergenic 60.0%
! GAGATGGGGATAGTGGTGGG+GGG - chr5_3:3362246-3362265 None:intergenic 60.0%
! GGAGATGGGGATAGTGGTGG+GGG - chr5_3:3362247-3362266 None:intergenic 60.0%
! GGTGGAGATGGGGATAGTGG+TGG - chr5_3:3362250-3362269 None:intergenic 60.0%
!! GGCAGTGGTGATGGGGGTAA+TGG - chr5_3:3362304-3362323 None:intergenic 60.0%
!! GGTGATGGCAGTGGTGATGG+GGG - chr5_3:3362310-3362329 None:intergenic 60.0%
AGCCAGAGAGCAGCAAGGCT+CGG + chr5_3:3363983-3364002 Msa0792230:CDS 60.0%
GGTTGTGGTGGTCAACGCGG+TGG - chr5_3:3362040-3362059 None:intergenic 65.0%
GGTCGAGGGGGTGGGGAAAA+TGG - chr5_3:3362061-3362080 None:intergenic 65.0%
GCCAGAGAGCAGCAAGGCTC+GGG + chr5_3:3363984-3364003 Msa0792230:CDS 65.0%
ACCCGAGCCTTGCTGCTCTC+TGG - chr5_3:3363988-3364007 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 3361703 3364326 3361703 ID=Msa0792230;Name=Msa0792230
chr5_3 mRNA 3361703 3364326 3361703 ID=Msa0792230-mRNA-1;Parent=Msa0792230;Name=Msa0792230-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|3|0|557
chr5_3 exon 3361703 3362655 3361703 ID=Msa0792230-mRNA-1:exon:1465;Parent=Msa0792230-mRNA-1
chr5_3 exon 3362789 3362905 3362789 ID=Msa0792230-mRNA-1:exon:1466;Parent=Msa0792230-mRNA-1
chr5_3 exon 3363723 3364326 3363723 ID=Msa0792230-mRNA-1:exon:1467;Parent=Msa0792230-mRNA-1
chr5_3 CDS 3361703 3362655 3361703 ID=Msa0792230-mRNA-1:cds;Parent=Msa0792230-mRNA-1
chr5_3 CDS 3362789 3362905 3362789 ID=Msa0792230-mRNA-1:cds;Parent=Msa0792230-mRNA-1
chr5_3 CDS 3363723 3364326 3363723 ID=Msa0792230-mRNA-1:cds;Parent=Msa0792230-mRNA-1
Gene Sequence

>Msa0792230

ATGGAAAACGATGATTGGGATCTCTTTTCTATTGTACGTAGCTGCAAAGCTACCACCTTTACTACTCCTGCCATCATTTCTGAAACTCCACCTCAAACCCTACCAATAACCAACACCATGAAAAATAACATCACATCCCCTCAAAACACAACACCGTATTGCTATGATGATTTTACATTTACCCAAGAAAATAACACAATCCCAATTACCCCACTTAAACCCAATGACTTCATTGAACTAGACAAATTGGTAATTCGTTCCAATCCAACAAAAATTATACCCACCCCTACTACCACCAATATCTTAAACCCTTCAATCACAACCACCATTATCCCCACCGCGTTGACCACCACAACCATTTTCCCCACCCCCTCGACCATTACTACACCTACTCATATCACCACCAATACCATCACTAACACTAGTTTTCATGGATCTGATCAAAATTCTACATTTTCTTATTTCCCAACACACGTTGAACAACAACATATGCAACCAAGTGAGTTCACTGAGCTAGAACAATGGATGCTCCAATTCAATCCCCCCACCACTATCCCCATCTCCACCATCACTATTCCCAACTCCACTACCCCTACTACCATTACCCCCATCACCACTGCCATCACCTTTAGTACACCCCCAACAACTATCAACACCCCCACCACCACTAGTCCTATAATCCCTACCACCACAACCATGATTAACTCTAGTGCTAATGGACTCAATCAATATCCCGCCGTTTCTGATTTCTCATTACCTGCCGAACAACAACAGGTTCAAGCCAACCAGAATAATACTACAATCCCCAAATTTCGACGTGAAATCGACCATGAATTAGTTCCACAACAACTCCAGAGAAGTCACAATCAACTACCAATTCAACTACCACAAACTAGTTTTAGATCTTTACCAAATACAAAACCAAAACGACCAAAATTTAAATCAGGAAAAAGAAAAAATGATAATCAAGTATCATTGGTGAGCTATGTGGGGGCAGATAAGGTTTCAGAGGATTCATGGAGATGGAGAAAATATGGACAAAAACCCATTAAAGGGTCCTCACATCCAAGAAGCTACTACAAATGTAGCAGTTCCAGTGATTGTTTAGCAAGAAAACAAGTGGAAAAAATAAAAGATGGAGATGACACTTATGAAGTGACATATCTAGGAGAACACAATCACAATAAACCAGCAAATAATCGGAACTCCAATGTCGGTAGCTCTCGGTACATGTCACCAGAGTTTGTATCAACTGTTGATGGAGAAGCTAGATGTTTCACAAACATCATAAACTTGGGTTCTCCTAATGCGGTAATGTTGCAGCTTGATCAGCCAGAGAGCAGCAAGGCTCGGGTTCTTGTTGGTCAATCAAAAATCCCTGATCTAAAAACTGAACTTAGTCCTTTACCTACACTGGGCAAAGCAAAATCTCCCCAAAATATTGAAGAATTGGATTCACCTAACATGATGATGTTGCAGTTTGATCAGCAGAAGAGCGAAAATTCCAATGTTTTTTCATATGAATCTGAAATCCCGTATACAGAAGCGAAATTTATTGAAAGCTTCAAAGAAGATGAAATTTTGATACCAAACATGACACCTATGTTAGAGGAATTCTTTTTGGATTTCAACAATGTCAATAGTTGTGCTCTCTATTCCATTAGTTGGGTTTGA
Protein sequence

>Msa0792230

MENDDWDLFSIVRSCKATTFTTPAIISETPPQTLPITNTMKNNITSPQNTTPYCYDDFTFTQENNTIPITPLKPNDFIELDKLVIRSNPTKIIPTPTTTNILNPSITTTIIPTALTTTTIFPTPSTITTPTHITTNTITNTSFHGSDQNSTFSYFPTHVEQQHMQPSEFTELEQWMLQFNPPTTIPISTITIPNSTTPTTITPITTAITFSTPPTTINTPTTTSPIIPTTTTMINSSANGLNQYPAVSDFSLPAEQQQVQANQNNTTIPKFRREIDHELVPQQLQRSHNQLPIQLPQTSFRSLPNTKPKRPKFKSGKRKNDNQVSLVSYVGADKVSEDSWRWRKYGQKPIKGSSHPRSYYKCSSSSDCLARKQVEKIKDGDDTYEVTYLGEHNHNKPANNRNSNVGSSRYMSPEFVSTVDGEARCFTNIINLGSPNAVMLQLDQPESSKARVLVGQSKIPDLKTELSPLPTLGKAKSPQNIEELDSPNMMMLQFDQQKSENSNVFSYESEIPYTEAKFIESFKEDEILIPNMTPMLEEFFLDFNNVNSCALYSISWV*