Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0794250 | AES93798.1 | 93.656 | 331 | 21 | 0 | 1 | 331 | 1 | 331 | 0.0 | 620 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0794250 | sp|Q8LAU9|GATA1_ARATH | 40.000 | 225 | 100 | 5 | 24 | 220 | 40 | 257 | 1.37e-40 | 146 |
| Msa0794250 | sp|Q8LAU9|GATA1_ARATH | 67.778 | 90 | 22 | 1 | 243 | 325 | 171 | 260 | 1.00e-36 | 136 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0794250 | A0A396HLT2 | 93.656 | 331 | 21 | 0 | 1 | 331 | 12 | 342 | 0.0 | 620 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0794250 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0794250 | MtrunA17_Chr5g0395391 | 93.656 | 331 | 21 | 0 | 1 | 331 | 12 | 342 | 0.0 | 620 |
| Msa0794250 | MtrunA17_Chr1g0169431 | 69.874 | 239 | 57 | 3 | 1 | 224 | 1 | 239 | 9.46e-98 | 289 |
| Msa0794250 | MtrunA17_Chr1g0169431 | 80.909 | 110 | 21 | 0 | 222 | 331 | 135 | 244 | 1.07e-60 | 194 |
| Msa0794250 | MtrunA17_Chr8g0340401 | 68.293 | 82 | 26 | 0 | 248 | 329 | 215 | 296 | 6.21e-34 | 127 |
| Msa0794250 | MtrunA17_Chr8g0340401 | 40.860 | 186 | 99 | 4 | 46 | 224 | 112 | 293 | 5.58e-32 | 122 |
| Msa0794250 | MtrunA17_Chr2g0326771 | 70.130 | 77 | 23 | 0 | 247 | 323 | 204 | 280 | 1.15e-33 | 125 |
| Msa0794250 | MtrunA17_Chr2g0326771 | 44.720 | 161 | 57 | 4 | 83 | 220 | 128 | 279 | 4.70e-31 | 119 |
| Msa0794250 | MtrunA17_Chr8g0372291 | 68.000 | 75 | 24 | 0 | 257 | 331 | 216 | 290 | 8.77e-33 | 123 |
| Msa0794250 | MtrunA17_Chr8g0372291 | 70.000 | 70 | 21 | 0 | 155 | 224 | 216 | 285 | 5.32e-30 | 115 |
| Msa0794250 | MtrunA17_Chr3g0140331 | 61.538 | 91 | 35 | 0 | 238 | 328 | 232 | 322 | 8.99e-33 | 124 |
| Msa0794250 | MtrunA17_Chr3g0140331 | 73.913 | 69 | 18 | 0 | 156 | 224 | 252 | 320 | 1.25e-29 | 116 |
| Msa0794250 | MtrunA17_Chr1g0146231 | 74.286 | 70 | 18 | 0 | 259 | 328 | 234 | 303 | 1.01e-32 | 124 |
| Msa0794250 | MtrunA17_Chr1g0146231 | 71.831 | 71 | 20 | 0 | 157 | 227 | 234 | 304 | 1.22e-29 | 115 |
| Msa0794250 | MtrunA17_Chr1g0199671 | 57.143 | 105 | 43 | 2 | 220 | 323 | 203 | 306 | 4.27e-32 | 122 |
| Msa0794250 | MtrunA17_Chr1g0199671 | 54.545 | 99 | 45 | 0 | 122 | 220 | 207 | 305 | 5.60e-30 | 116 |
| Msa0794250 | MtrunA17_Chr4g0035891 | 48.611 | 144 | 58 | 5 | 191 | 328 | 147 | 280 | 2.65e-31 | 119 |
| Msa0794250 | MtrunA17_Chr4g0035891 | 70.588 | 68 | 20 | 0 | 157 | 224 | 211 | 278 | 6.69e-28 | 110 |
| Msa0794250 | MtrunA17_Chr4g0028961 | 68.354 | 79 | 25 | 0 | 247 | 325 | 220 | 298 | 3.63e-31 | 119 |
| Msa0794250 | MtrunA17_Chr4g0028961 | 62.651 | 83 | 30 | 1 | 139 | 220 | 213 | 295 | 1.28e-28 | 112 |
| Msa0794250 | MtrunA17_Chr6g0461591 | 72.059 | 68 | 19 | 0 | 258 | 325 | 191 | 258 | 5.58e-31 | 117 |
| Msa0794250 | MtrunA17_Chr6g0461591 | 73.846 | 65 | 17 | 0 | 156 | 220 | 191 | 255 | 7.27e-30 | 114 |
| Msa0794250 | MtrunA17_Chr1g0213161 | 66.197 | 71 | 24 | 0 | 257 | 327 | 150 | 220 | 1.27e-30 | 115 |
| Msa0794250 | MtrunA17_Chr1g0213161 | 68.182 | 66 | 21 | 0 | 155 | 220 | 150 | 215 | 4.56e-28 | 109 |
| Msa0794250 | MtrunA17_Chr5g0404981 | 67.123 | 73 | 24 | 0 | 259 | 331 | 300 | 372 | 2.96e-30 | 118 |
| Msa0794250 | MtrunA17_Chr5g0404981 | 66.667 | 72 | 24 | 0 | 157 | 228 | 300 | 371 | 6.87e-28 | 112 |
| Msa0794250 | MtrunA17_Chr3g0145121 | 62.025 | 79 | 30 | 0 | 250 | 328 | 206 | 284 | 5.87e-30 | 115 |
| Msa0794250 | MtrunA17_Chr3g0145121 | 59.259 | 81 | 33 | 0 | 148 | 228 | 206 | 286 | 9.22e-28 | 110 |
| Msa0794250 | MtrunA17_Chr7g0253101 | 73.846 | 65 | 17 | 0 | 259 | 323 | 188 | 252 | 6.79e-30 | 114 |
| Msa0794250 | MtrunA17_Chr7g0253101 | 75.000 | 64 | 16 | 0 | 157 | 220 | 188 | 251 | 3.28e-29 | 112 |
| Msa0794250 | MtrunA17_Chr7g0232671 | 53.731 | 67 | 29 | 1 | 259 | 325 | 187 | 251 | 1.47e-17 | 80.9 |
| Msa0794250 | MtrunA17_Chr7g0232671 | 54.839 | 62 | 28 | 0 | 157 | 218 | 187 | 248 | 1.60e-17 | 80.9 |
| Msa0794250 | MtrunA17_Chr7g0232701 | 49.333 | 75 | 37 | 1 | 247 | 320 | 60 | 134 | 2.46e-16 | 74.7 |
| Msa0794250 | MtrunA17_Chr7g0232701 | 51.613 | 62 | 30 | 0 | 157 | 218 | 73 | 134 | 1.81e-15 | 72.4 |
| Msa0794250 | MtrunA17_Chr7g0232681 | 48.000 | 75 | 38 | 1 | 247 | 320 | 119 | 193 | 1.66e-15 | 73.9 |
| Msa0794250 | MtrunA17_Chr7g0232681 | 50.000 | 62 | 31 | 0 | 157 | 218 | 132 | 193 | 7.89e-15 | 72.0 |
| Msa0794250 | MtrunA17_Chr7g0271861 | 57.143 | 42 | 18 | 0 | 151 | 192 | 16 | 57 | 7.85e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0794250 | AT3G24050.1 | 40.000 | 225 | 100 | 5 | 24 | 220 | 40 | 257 | 1.39e-41 | 146 |
| Msa0794250 | AT3G24050.1 | 67.778 | 90 | 22 | 1 | 243 | 325 | 171 | 260 | 1.02e-37 | 136 |
| Msa0794250 | AT4G32890.1 | 73.611 | 72 | 19 | 0 | 258 | 329 | 196 | 267 | 7.07e-34 | 127 |
| Msa0794250 | AT4G32890.1 | 72.464 | 69 | 19 | 0 | 156 | 224 | 196 | 264 | 4.08e-30 | 117 |
| Msa0794250 | AT4G34680.1 | 54.128 | 109 | 48 | 1 | 222 | 328 | 141 | 249 | 3.56e-33 | 124 |
| Msa0794250 | AT4G34680.1 | 47.143 | 140 | 59 | 4 | 96 | 224 | 112 | 247 | 1.57e-32 | 122 |
| Msa0794250 | AT4G34680.2 | 54.128 | 109 | 48 | 1 | 222 | 328 | 141 | 249 | 3.56e-33 | 124 |
| Msa0794250 | AT4G34680.2 | 47.143 | 140 | 59 | 4 | 96 | 224 | 112 | 247 | 1.57e-32 | 122 |
| Msa0794250 | AT5G25830.1 | 74.286 | 70 | 18 | 0 | 259 | 328 | 219 | 288 | 5.90e-32 | 122 |
| Msa0794250 | AT5G25830.1 | 73.529 | 68 | 18 | 0 | 157 | 224 | 219 | 286 | 3.11e-29 | 115 |
| Msa0794250 | AT3G60530.1 | 61.628 | 86 | 33 | 0 | 241 | 326 | 140 | 225 | 1.37e-31 | 119 |
| Msa0794250 | AT3G60530.1 | 44.681 | 141 | 69 | 3 | 91 | 224 | 87 | 225 | 2.22e-31 | 118 |
| Msa0794250 | AT1G08010.2 | 63.750 | 80 | 29 | 0 | 246 | 325 | 207 | 286 | 2.42e-31 | 120 |
| Msa0794250 | AT1G08010.2 | 51.667 | 120 | 50 | 3 | 111 | 222 | 166 | 285 | 6.26e-30 | 116 |
| Msa0794250 | AT1G08010.1 | 63.750 | 80 | 29 | 0 | 246 | 325 | 207 | 286 | 2.42e-31 | 120 |
| Msa0794250 | AT1G08010.1 | 51.667 | 120 | 50 | 3 | 111 | 222 | 166 | 285 | 6.26e-30 | 116 |
| Msa0794250 | AT1G08010.3 | 63.750 | 80 | 29 | 0 | 246 | 325 | 207 | 286 | 2.42e-31 | 120 |
| Msa0794250 | AT1G08010.3 | 51.667 | 120 | 50 | 3 | 111 | 222 | 166 | 285 | 6.26e-30 | 116 |
| Msa0794250 | AT5G66320.2 | 75.000 | 68 | 17 | 0 | 259 | 326 | 249 | 316 | 2.87e-31 | 120 |
| Msa0794250 | AT5G66320.2 | 72.059 | 68 | 19 | 0 | 157 | 224 | 249 | 316 | 7.31e-29 | 114 |
| Msa0794250 | AT5G66320.1 | 75.000 | 68 | 17 | 0 | 259 | 326 | 249 | 316 | 2.87e-31 | 120 |
| Msa0794250 | AT5G66320.1 | 72.059 | 68 | 19 | 0 | 157 | 224 | 249 | 316 | 7.31e-29 | 114 |
| Msa0794250 | AT2G45050.1 | 70.000 | 70 | 21 | 0 | 259 | 328 | 179 | 248 | 8.95e-31 | 117 |
| Msa0794250 | AT2G45050.1 | 44.898 | 147 | 57 | 4 | 101 | 224 | 101 | 246 | 9.35e-29 | 112 |
| Msa0794250 | AT1G08000.2 | 62.195 | 82 | 31 | 0 | 244 | 325 | 203 | 284 | 9.73e-31 | 118 |
| Msa0794250 | AT1G08000.2 | 60.759 | 79 | 31 | 0 | 142 | 220 | 203 | 281 | 2.96e-28 | 111 |
| Msa0794250 | AT1G08000.1 | 62.195 | 82 | 31 | 0 | 244 | 325 | 203 | 284 | 9.73e-31 | 118 |
| Msa0794250 | AT1G08000.1 | 60.759 | 79 | 31 | 0 | 142 | 220 | 203 | 281 | 2.96e-28 | 111 |
| Msa0794250 | AT3G51080.1 | 68.493 | 73 | 23 | 0 | 259 | 331 | 221 | 293 | 5.25e-30 | 116 |
| Msa0794250 | AT3G51080.1 | 72.059 | 68 | 19 | 0 | 157 | 224 | 221 | 288 | 1.22e-28 | 112 |
| Msa0794250 | AT4G36240.1 | 64.865 | 74 | 26 | 0 | 253 | 326 | 158 | 231 | 1.43e-29 | 113 |
| Msa0794250 | AT4G36240.1 | 65.714 | 70 | 24 | 0 | 151 | 220 | 158 | 227 | 9.04e-28 | 108 |
| Msa0794250 | AT3G45170.1 | 48.739 | 119 | 55 | 2 | 107 | 224 | 69 | 182 | 7.87e-29 | 110 |
| Msa0794250 | AT3G45170.1 | 63.768 | 69 | 25 | 0 | 259 | 327 | 115 | 183 | 3.02e-27 | 106 |
| Msa0794250 | AT3G54810.1 | 69.118 | 68 | 21 | 0 | 259 | 326 | 229 | 296 | 1.21e-27 | 110 |
| Msa0794250 | AT3G54810.1 | 70.312 | 64 | 19 | 0 | 157 | 220 | 229 | 292 | 5.47e-26 | 105 |
| Msa0794250 | AT3G54810.2 | 69.118 | 68 | 21 | 0 | 259 | 326 | 229 | 296 | 1.21e-27 | 110 |
| Msa0794250 | AT3G54810.2 | 70.312 | 64 | 19 | 0 | 157 | 220 | 229 | 292 | 5.47e-26 | 105 |
| Msa0794250 | AT2G28340.1 | 64.615 | 65 | 23 | 0 | 261 | 325 | 193 | 257 | 8.78e-25 | 102 |
| Msa0794250 | AT2G28340.1 | 66.667 | 60 | 20 | 0 | 159 | 218 | 193 | 252 | 1.19e-22 | 96.3 |
| Msa0794250 | AT3G06740.1 | 63.889 | 36 | 13 | 0 | 157 | 192 | 41 | 76 | 4.21e-11 | 60.8 |
Find 85 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTTGCAGGGCGGTATTC+AGG | 0.237442 | 5_3:-6115199 | None:intergenic |
| CTATTTGCAGGGCGGTATTC+AGG | 0.337416 | 5_3:-6115505 | None:intergenic |
| GGTTTGCTTCGATTGTTCTT+TGG | 0.359998 | 5_3:-6115356 | None:intergenic |
| ACAGGAAAGTAGTGGAAATA+AGG | 0.364798 | 5_3:+6115563 | Msa0794250:CDS |
| GTTGTTTCCACGCGAATTGA+TGG | 0.373020 | 5_3:-6115012 | None:intergenic |
| ATGCATGTGGGGTCAGGTAT+AGG | 0.384736 | 5_3:+6115467 | Msa0794250:CDS |
| ATGCATGTGGGGTTAGGTAT+AGG | 0.393134 | 5_3:+6115161 | Msa0794250:CDS |
| CGAAATATCTGGTTGAATAC+AGG | 0.393474 | 5_3:-6114819 | None:intergenic |
| CCACGCGAATTGATGGTTCC+AGG | 0.401734 | 5_3:-6115005 | None:intergenic |
| AGCTGGAAATGCATCTTTGT+TGG | 0.402382 | 5_3:-6114774 | None:intergenic |
| GCTGTTTCCACGTGAATTGA+CGG | 0.414591 | 5_3:-6115318 | None:intergenic |
| TTTGTAATGCATGTGGGGTT+AGG | 0.415099 | 5_3:+6115155 | Msa0794250:CDS |
| TCTTTGGATGCTTTGTTACT+CGG | 0.415607 | 5_3:-6115340 | None:intergenic |
| TCATCAAATGTTTCAACAGC+TGG | 0.422269 | 5_3:-6114791 | None:intergenic |
| GCCTTGGCATTTCTGATACC+TGG | 0.422871 | 5_3:+6114987 | Msa0794250:CDS |
| GAAGCAGAAGAGAATGAGAA+TGG | 0.447611 | 5_3:+6115585 | Msa0794250:CDS |
| GAGCTGATAATACTCCTCTA+TGG | 0.452228 | 5_3:+6115104 | Msa0794250:CDS |
| CTATGGCGTGCAGGTCCTGC+TGG | 0.452250 | 5_3:+6115121 | Msa0794250:CDS |
| CTTGTGCTGTTCTCAACAAT+TGG | 0.453321 | 5_3:-6114860 | None:intergenic |
| TTGATTCTGTGGATGACCTA+TGG | 0.476926 | 5_3:+6114207 | Msa0794250:CDS |
| TTTGTAATGCATGTGGGGTC+AGG | 0.477301 | 5_3:+6115461 | Msa0794250:CDS |
| AACAGCATTACACTCTTAAG+TGG | 0.478526 | 5_3:+6114908 | Msa0794250:CDS |
| GCCTTGGCATTTCTGACACA+TGG | 0.480082 | 5_3:+6115293 | Msa0794250:CDS |
| ACATTTCCTCCCAATGGTTG+AGG | 0.482486 | 5_3:-6115377 | None:intergenic |
| CGAAGCAAACCTCAACCATT+GGG | 0.485894 | 5_3:+6115368 | Msa0794250:CDS |
| GACTTGCTCCGTGCACGGAC+AGG | 0.486856 | 5_3:-6114950 | None:intergenic |
| GCGAAACAAACCTCAACCAT+TGG | 0.490923 | 5_3:+6115061 | Msa0794250:CDS |
| TTAAACTTACAGAAAATGAA+TGG | 0.491207 | 5_3:-6114310 | None:intergenic |
| AAGCAGAAGAGAATGAGAAT+GGG | 0.496918 | 5_3:+6115586 | Msa0794250:CDS |
| ACATTGCCTCCCAATGGTTG+AGG | 0.497491 | 5_3:-6115071 | None:intergenic |
| TCGAAGCAAACCTCAACCAT+TGG | 0.499266 | 5_3:+6115367 | Msa0794250:CDS |
| AGCATTTCCTTCATTTGACC+TGG | 0.504334 | 5_3:+6114277 | Msa0794250:CDS |
| TATTTCCACTACTTTCCTGT+GGG | 0.505142 | 5_3:-6115560 | None:intergenic |
| CGAAACAAACCTCAACCATT+GGG | 0.506442 | 5_3:+6115062 | Msa0794250:CDS |
| ACTTACAGAAAATGAATGGT+TGG | 0.511740 | 5_3:-6114306 | None:intergenic |
| GATGGAGGCTCTTGATTCTG+TGG | 0.514579 | 5_3:+6114196 | Msa0794250:exon |
| GTTCCAGGAGTTTGCAGTAG+AGG | 0.515595 | 5_3:+6114736 | Msa0794250:intron |
| AATACTCCGCAATGGCGTGC+AGG | 0.516576 | 5_3:+6115418 | Msa0794250:CDS |
| TGTGGGGTCAGGTATAGGTC+TGG | 0.537754 | 5_3:+6115472 | Msa0794250:CDS |
| TGAAGTTCCCTGTCCGTGCA+CGG | 0.541394 | 5_3:+6114942 | Msa0794250:CDS |
| TGGAGTTTCTTATCTGACAT+AGG | 0.541869 | 5_3:+6114227 | Msa0794250:CDS |
| TTATTTCCACTACTTTCCTG+TGG | 0.542402 | 5_3:-6115561 | None:intergenic |
| TTGCAGTAGAGGATCTTGAA+TGG | 0.544677 | 5_3:+6114747 | Msa0794250:CDS |
| AATACTCCTCTATGGCGTGC+AGG | 0.546436 | 5_3:+6115112 | Msa0794250:CDS |
| TGTGGGGTTAGGTATAGGTC+TGG | 0.555845 | 5_3:+6115166 | Msa0794250:CDS |
| ATGAATGGTTGGTATCATCC+AGG | 0.557618 | 5_3:-6114295 | None:intergenic |
| TATTTCCACTACTTTCCTGT+GGG | 0.558023 | 5_3:-6115254 | None:intergenic |
| TGTGAGACTTGCTCCGTGCA+CGG | 0.571008 | 5_3:-6114955 | None:intergenic |
| AACACTTTGTAATGCATGTG+GGG | 0.575624 | 5_3:+6115150 | Msa0794250:CDS |
| GTATCATCCAGGTCAAATGA+AGG | 0.576270 | 5_3:-6114284 | None:intergenic |
| GCAGGACCTGCACGCCATAG+AGG | 0.577006 | 5_3:-6115118 | None:intergenic |
| AAAACACTTTGTAATGCATG+TGG | 0.577073 | 5_3:+6115148 | Msa0794250:CDS |
| AAAACACTTTGTAATGCATG+TGG | 0.577073 | 5_3:+6115454 | Msa0794250:CDS |
| ACTTAAGAGTGTAATGCTGT+TGG | 0.577340 | 5_3:-6114906 | None:intergenic |
| TCTCACAGTAAGCCTCGCCT+TGG | 0.579807 | 5_3:+6114971 | Msa0794250:CDS |
| ATGATGACATTTCCTCCCAA+TGG | 0.580868 | 5_3:-6115383 | None:intergenic |
| ACTTGCTCCGTGCACGGACA+GGG | 0.585355 | 5_3:-6114949 | None:intergenic |
| CAATGGCGTGCAGGTCCCGA+TGG | 0.590689 | 5_3:+6115427 | Msa0794250:CDS |
| ATTCGTAGTAAGCCTCGCCT+TGG | 0.591249 | 5_3:+6115277 | Msa0794250:CDS |
| TAATGCCCACAGGAAAGTAG+TGG | 0.591342 | 5_3:+6115555 | Msa0794250:CDS |
| TTATTTCCACTACTTTCCTG+TGG | 0.598127 | 5_3:-6115255 | None:intergenic |
| AAACACTTTGTAATGCATGT+GGG | 0.605185 | 5_3:+6115149 | Msa0794250:CDS |
| TAATTCCCACAGGAAAGTAG+TGG | 0.608211 | 5_3:+6115249 | Msa0794250:CDS |
| TCCAGGTATCAGAAATGCCA+AGG | 0.610134 | 5_3:-6114988 | None:intergenic |
| TCCATGTGTCAGAAATGCCA+AGG | 0.617962 | 5_3:-6115294 | None:intergenic |
| AACACTTTGTAATGCATGTG+GGG | 0.618425 | 5_3:+6115456 | Msa0794250:CDS |
| AAACACTTTGTAATGCATGT+GGG | 0.620936 | 5_3:+6115455 | Msa0794250:CDS |
| GGGAGGAAATGTCATCATTG+TGG | 0.622937 | 5_3:+6115388 | Msa0794250:CDS |
| GGGAGGCAATGTCATCATTG+TGG | 0.625233 | 5_3:+6115082 | Msa0794250:CDS |
| ATGTGCATTCTAATTCCCAC+AGG | 0.631252 | 5_3:+6115239 | Msa0794250:CDS |
| GGCGGTATTCAGGTACAAGT+CGG | 0.632650 | 5_3:-6115189 | None:intergenic |
| TTTCTTATCTGACATAGGCG+AGG | 0.637448 | 5_3:+6114232 | Msa0794250:CDS |
| ACGTGCATTCTAATGCCCAC+AGG | 0.637706 | 5_3:+6115545 | Msa0794250:CDS |
| AACAAACCTCAACCATTGGG+AGG | 0.638620 | 5_3:+6115065 | Msa0794250:CDS |
| CCTGGAACCATCAATTCGCG+TGG | 0.640359 | 5_3:+6115005 | Msa0794250:CDS |
| TGTCAGATAAGAAACTCCAT+AGG | 0.643894 | 5_3:-6114223 | None:intergenic |
| CATGGAACCGTCAATTCACG+TGG | 0.644051 | 5_3:+6115311 | Msa0794250:CDS |
| TCGGGACCTGCACGCCATTG+CGG | 0.648022 | 5_3:-6115424 | None:intergenic |
| ATGATGACATTGCCTCCCAA+TGG | 0.653586 | 5_3:-6115077 | None:intergenic |
| GTGTCAGAAATGCCAAGGCG+AGG | 0.655134 | 5_3:-6115289 | None:intergenic |
| AGCAAACCTCAACCATTGGG+AGG | 0.655985 | 5_3:+6115371 | Msa0794250:CDS |
| GTATCAGAAATGCCAAGGCG+AGG | 0.673094 | 5_3:-6114983 | None:intergenic |
| GAGCTGATAATACTCCGCAA+TGG | 0.677467 | 5_3:+6115410 | Msa0794250:CDS |
| AAGTTGGGCTCTTTGCAGGG+CGG | 0.700990 | 5_3:-6115207 | None:intergenic |
| AAGTTGGGCTATTTGCAGGG+CGG | 0.740794 | 5_3:-6115513 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAGAAAAGTATTATGATT+TGG | + | chr5_3:6114365-6114384 | Msa0794250:intron | 15.0% |
| !!! | TTTAGAAAAGTATTATGATT+TGG | + | chr5_3:6114365-6114384 | Msa0794250:intron | 15.0% |
| !! | TTAAACTTACAGAAAATGAA+TGG | - | chr5_3:6114313-6114332 | None:intergenic | 20.0% |
| !!! | ATACTTTTCTAAAATTCTCA+CGG | - | chr5_3:6114358-6114377 | None:intergenic | 20.0% |
| !!! | TACTTTCTAAAATTCTACTT+TGG | - | chr5_3:6114432-6114451 | None:intergenic | 20.0% |
| !! | TTAAACTTACAGAAAATGAA+TGG | - | chr5_3:6114313-6114332 | None:intergenic | 20.0% |
| !!! | ATACTTTTCTAAAATTCTCA+CGG | - | chr5_3:6114358-6114377 | None:intergenic | 20.0% |
| !!! | TACTTTCTAAAATTCTACTT+TGG | - | chr5_3:6114432-6114451 | None:intergenic | 20.0% |
| ! | AATGAAGGAAATGCTTTTGT+AGG | - | chr5_3:6114272-6114291 | None:intergenic | 30.0% |
| ACTTACAGAAAATGAATGGT+TGG | - | chr5_3:6114309-6114328 | None:intergenic | 30.0% | |
| TTTAACCTTTCCAAAATGCT+TGG | + | chr5_3:6114328-6114347 | Msa0794250:intron | 30.0% | |
| !!! | GAATTTTAGAAAGTACTCCT+AGG | + | chr5_3:6114437-6114456 | Msa0794250:intron | 30.0% |
| ! | TCCTTTTTGCATCAATGTAT+TGG | + | chr5_3:6114473-6114492 | Msa0794250:intron | 30.0% |
| ! | TACTTGTGATCACTGTTTTA+AGG | + | chr5_3:6114562-6114581 | Msa0794250:intron | 30.0% |
| TATTCAAACTGAGATAGATG+TGG | - | chr5_3:6114604-6114623 | None:intergenic | 30.0% | |
| !! | TTTTGATTCTGCGAAATATC+TGG | - | chr5_3:6114833-6114852 | None:intergenic | 30.0% |
| !! | CATGCATTACAAAGTGTTTT+TGG | - | chr5_3:6115148-6115167 | None:intergenic | 30.0% |
| AAAACACTTTGTAATGCATG+TGG | + | chr5_3:6115148-6115167 | Msa0794250:CDS | 30.0% | |
| AAACACTTTGTAATGCATGT+GGG | + | chr5_3:6115149-6115168 | Msa0794250:CDS | 30.0% | |
| !! | CATGCATTACAAAGTGTTTT+TGG | - | chr5_3:6115148-6115167 | None:intergenic | 30.0% |
| AAAACACTTTGTAATGCATG+TGG | + | chr5_3:6115148-6115167 | Msa0794250:CDS | 30.0% | |
| AAACACTTTGTAATGCATGT+GGG | + | chr5_3:6115149-6115168 | Msa0794250:CDS | 30.0% | |
| ! | AATGAAGGAAATGCTTTTGT+AGG | - | chr5_3:6114272-6114291 | None:intergenic | 30.0% |
| ACTTACAGAAAATGAATGGT+TGG | - | chr5_3:6114309-6114328 | None:intergenic | 30.0% | |
| TTTAACCTTTCCAAAATGCT+TGG | + | chr5_3:6114328-6114347 | Msa0794250:intron | 30.0% | |
| !!! | GAATTTTAGAAAGTACTCCT+AGG | + | chr5_3:6114437-6114456 | Msa0794250:intron | 30.0% |
| ! | TCCTTTTTGCATCAATGTAT+TGG | + | chr5_3:6114473-6114492 | Msa0794250:intron | 30.0% |
| ! | TACTTGTGATCACTGTTTTA+AGG | + | chr5_3:6114562-6114581 | Msa0794250:intron | 30.0% |
| TATTCAAACTGAGATAGATG+TGG | - | chr5_3:6114604-6114623 | None:intergenic | 30.0% | |
| !! | TTTTGATTCTGCGAAATATC+TGG | - | chr5_3:6114833-6114852 | None:intergenic | 30.0% |
| !! | CATGCATTACAAAGTGTTTT+TGG | - | chr5_3:6115148-6115167 | None:intergenic | 30.0% |
| AAAACACTTTGTAATGCATG+TGG | + | chr5_3:6115148-6115167 | Msa0794250:CDS | 30.0% | |
| AAACACTTTGTAATGCATGT+GGG | + | chr5_3:6115149-6115168 | Msa0794250:CDS | 30.0% | |
| !! | CATGCATTACAAAGTGTTTT+TGG | - | chr5_3:6115148-6115167 | None:intergenic | 30.0% |
| AAAACACTTTGTAATGCATG+TGG | + | chr5_3:6115148-6115167 | Msa0794250:CDS | 30.0% | |
| AAACACTTTGTAATGCATGT+GGG | + | chr5_3:6115149-6115168 | Msa0794250:CDS | 30.0% | |
| TGTCAGATAAGAAACTCCAT+AGG | - | chr5_3:6114226-6114245 | None:intergenic | 35.0% | |
| TGGAGTTTCTTATCTGACAT+AGG | + | chr5_3:6114227-6114246 | Msa0794250:CDS | 35.0% | |
| AGGAAGACAAGTAAAAACCT+AGG | - | chr5_3:6114457-6114476 | None:intergenic | 35.0% | |
| GCCAATACATTGATGCAAAA+AGG | - | chr5_3:6114477-6114496 | None:intergenic | 35.0% | |
| TCATCAAATGTTTCAACAGC+TGG | - | chr5_3:6114794-6114813 | None:intergenic | 35.0% | |
| CGAAATATCTGGTTGAATAC+AGG | - | chr5_3:6114822-6114841 | None:intergenic | 35.0% | |
| ! | ACTTAAGAGTGTAATGCTGT+TGG | - | chr5_3:6114909-6114928 | None:intergenic | 35.0% |
| AACAGCATTACACTCTTAAG+TGG | + | chr5_3:6114908-6114927 | Msa0794250:CDS | 35.0% | |
| AACACTTTGTAATGCATGTG+GGG | + | chr5_3:6115150-6115169 | Msa0794250:CDS | 35.0% | |
| TATTTCCACTACTTTCCTGT+GGG | - | chr5_3:6115257-6115276 | None:intergenic | 35.0% | |
| TTATTTCCACTACTTTCCTG+TGG | - | chr5_3:6115258-6115277 | None:intergenic | 35.0% | |
| ! | TCTTTGGATGCTTTGTTACT+CGG | - | chr5_3:6115343-6115362 | None:intergenic | 35.0% |
| !!! | ACAAAGTGTTTTTGGACCAT+CGG | - | chr5_3:6115446-6115465 | None:intergenic | 35.0% |
| AACACTTTGTAATGCATGTG+GGG | + | chr5_3:6115150-6115169 | Msa0794250:CDS | 35.0% | |
| AAAAAGTTGGGCTATTTGCA+GGG | - | chr5_3:6115519-6115538 | None:intergenic | 35.0% | |
| TATTTCCACTACTTTCCTGT+GGG | - | chr5_3:6115257-6115276 | None:intergenic | 35.0% | |
| TTATTTCCACTACTTTCCTG+TGG | - | chr5_3:6115258-6115277 | None:intergenic | 35.0% | |
| ! | ACAGGAAAGTAGTGGAAATA+AGG | + | chr5_3:6115257-6115276 | Msa0794250:CDS | 35.0% |
| AAGCAGAAGAGAATGAGAAT+GGG | + | chr5_3:6115586-6115605 | Msa0794250:CDS | 35.0% | |
| TGTCAGATAAGAAACTCCAT+AGG | - | chr5_3:6114226-6114245 | None:intergenic | 35.0% | |
| TGGAGTTTCTTATCTGACAT+AGG | + | chr5_3:6114227-6114246 | Msa0794250:CDS | 35.0% | |
| AGGAAGACAAGTAAAAACCT+AGG | - | chr5_3:6114457-6114476 | None:intergenic | 35.0% | |
| GCCAATACATTGATGCAAAA+AGG | - | chr5_3:6114477-6114496 | None:intergenic | 35.0% | |
| TCATCAAATGTTTCAACAGC+TGG | - | chr5_3:6114794-6114813 | None:intergenic | 35.0% | |
| CGAAATATCTGGTTGAATAC+AGG | - | chr5_3:6114822-6114841 | None:intergenic | 35.0% | |
| ! | ACTTAAGAGTGTAATGCTGT+TGG | - | chr5_3:6114909-6114928 | None:intergenic | 35.0% |
| AACAGCATTACACTCTTAAG+TGG | + | chr5_3:6114908-6114927 | Msa0794250:CDS | 35.0% | |
| AACACTTTGTAATGCATGTG+GGG | + | chr5_3:6115150-6115169 | Msa0794250:CDS | 35.0% | |
| TATTTCCACTACTTTCCTGT+GGG | - | chr5_3:6115257-6115276 | None:intergenic | 35.0% | |
| TTATTTCCACTACTTTCCTG+TGG | - | chr5_3:6115258-6115277 | None:intergenic | 35.0% | |
| ! | TCTTTGGATGCTTTGTTACT+CGG | - | chr5_3:6115343-6115362 | None:intergenic | 35.0% |
| !!! | ACAAAGTGTTTTTGGACCAT+CGG | - | chr5_3:6115446-6115465 | None:intergenic | 35.0% |
| AACACTTTGTAATGCATGTG+GGG | + | chr5_3:6115150-6115169 | Msa0794250:CDS | 35.0% | |
| AAAAAGTTGGGCTATTTGCA+GGG | - | chr5_3:6115519-6115538 | None:intergenic | 35.0% | |
| TATTTCCACTACTTTCCTGT+GGG | - | chr5_3:6115257-6115276 | None:intergenic | 35.0% | |
| TTATTTCCACTACTTTCCTG+TGG | - | chr5_3:6115258-6115277 | None:intergenic | 35.0% | |
| ! | ACAGGAAAGTAGTGGAAATA+AGG | + | chr5_3:6115257-6115276 | Msa0794250:CDS | 35.0% |
| AAGCAGAAGAGAATGAGAAT+GGG | + | chr5_3:6115586-6115605 | Msa0794250:CDS | 35.0% | |
| TTGATTCTGTGGATGACCTA+TGG | + | chr5_3:6114207-6114226 | Msa0794250:CDS | 40.0% | |
| TTTCTTATCTGACATAGGCG+AGG | + | chr5_3:6114232-6114251 | Msa0794250:CDS | 40.0% | |
| AGCATTTCCTTCATTTGACC+TGG | + | chr5_3:6114277-6114296 | Msa0794250:CDS | 40.0% | |
| GTATCATCCAGGTCAAATGA+AGG | - | chr5_3:6114287-6114306 | None:intergenic | 40.0% | |
| ! | ATGAATGGTTGGTATCATCC+AGG | - | chr5_3:6114298-6114317 | None:intergenic | 40.0% |
| ACCTTTCCAAAATGCTTGGA+AGG | + | chr5_3:6114332-6114351 | Msa0794250:intron | 40.0% | |
| !!! | GTTTTAAGGTTTCCGTGTTG+TGG | + | chr5_3:6114576-6114595 | Msa0794250:intron | 40.0% |
| TCCTGGAACATGAAAACAAG+CGG | - | chr5_3:6114659-6114678 | None:intergenic | 40.0% | |
| GTATTCACACTGAAAACTCC+TGG | - | chr5_3:6114676-6114695 | None:intergenic | 40.0% | |
| TCCTGGAACATGAAAACAAG+CGG | - | chr5_3:6114659-6114678 | None:intergenic | 40.0% | |
| TTGCAGTAGAGGATCTTGAA+TGG | + | chr5_3:6114747-6114766 | Msa0794250:CDS | 40.0% | |
| AGCTGGAAATGCATCTTTGT+TGG | - | chr5_3:6114777-6114796 | None:intergenic | 40.0% | |
| ! | CTTGTGCTGTTCTCAACAAT+TGG | - | chr5_3:6114863-6114882 | None:intergenic | 40.0% |
| CGAAACAAACCTCAACCATT+GGG | + | chr5_3:6115062-6115081 | Msa0794250:CDS | 40.0% | |
| GAGCTGATAATACTCCTCTA+TGG | + | chr5_3:6115104-6115123 | Msa0794250:CDS | 40.0% | |
| TTTGTAATGCATGTGGGGTT+AGG | + | chr5_3:6115155-6115174 | Msa0794250:CDS | 40.0% | |
| AAAAAGTTGGGCTCTTTGCA+GGG | - | chr5_3:6115213-6115232 | None:intergenic | 40.0% | |
| GCACATTGCTGCAAAAAGTT+GGG | - | chr5_3:6115225-6115244 | None:intergenic | 40.0% | |
| TGCACATTGCTGCAAAAAGT+TGG | - | chr5_3:6115226-6115245 | None:intergenic | 40.0% | |
| ATGTGCATTCTAATTCCCAC+AGG | + | chr5_3:6115239-6115258 | Msa0794250:CDS | 40.0% | |
| TAATTCCCACAGGAAAGTAG+TGG | + | chr5_3:6115249-6115268 | Msa0794250:CDS | 40.0% | |
| ! | GGTTTGCTTCGATTGTTCTT+TGG | - | chr5_3:6115359-6115378 | None:intergenic | 40.0% |
| ATGATGACATTTCCTCCCAA+TGG | - | chr5_3:6115386-6115405 | None:intergenic | 40.0% | |
| !!! | CAAAGTGTTTTTGGACCATC+GGG | - | chr5_3:6115445-6115464 | None:intergenic | 40.0% |
| CAAAAAGTTGGGCTATTTGC+AGG | - | chr5_3:6115520-6115539 | None:intergenic | 40.0% | |
| GAAGCAGAAGAGAATGAGAA+TGG | + | chr5_3:6115585-6115604 | Msa0794250:CDS | 40.0% | |
| TTGATTCTGTGGATGACCTA+TGG | + | chr5_3:6114207-6114226 | Msa0794250:CDS | 40.0% | |
| TTTCTTATCTGACATAGGCG+AGG | + | chr5_3:6114232-6114251 | Msa0794250:CDS | 40.0% | |
| AGCATTTCCTTCATTTGACC+TGG | + | chr5_3:6114277-6114296 | Msa0794250:CDS | 40.0% | |
| GTATCATCCAGGTCAAATGA+AGG | - | chr5_3:6114287-6114306 | None:intergenic | 40.0% | |
| ! | ATGAATGGTTGGTATCATCC+AGG | - | chr5_3:6114298-6114317 | None:intergenic | 40.0% |
| ACCTTTCCAAAATGCTTGGA+AGG | + | chr5_3:6114332-6114351 | Msa0794250:intron | 40.0% | |
| !!! | GTTTTAAGGTTTCCGTGTTG+TGG | + | chr5_3:6114576-6114595 | Msa0794250:intron | 40.0% |
| TCCTGGAACATGAAAACAAG+CGG | - | chr5_3:6114659-6114678 | None:intergenic | 40.0% | |
| GTATTCACACTGAAAACTCC+TGG | - | chr5_3:6114676-6114695 | None:intergenic | 40.0% | |
| TCCTGGAACATGAAAACAAG+CGG | - | chr5_3:6114659-6114678 | None:intergenic | 40.0% | |
| TTGCAGTAGAGGATCTTGAA+TGG | + | chr5_3:6114747-6114766 | Msa0794250:CDS | 40.0% | |
| AGCTGGAAATGCATCTTTGT+TGG | - | chr5_3:6114777-6114796 | None:intergenic | 40.0% | |
| ! | CTTGTGCTGTTCTCAACAAT+TGG | - | chr5_3:6114863-6114882 | None:intergenic | 40.0% |
| CGAAACAAACCTCAACCATT+GGG | + | chr5_3:6115062-6115081 | Msa0794250:CDS | 40.0% | |
| GAGCTGATAATACTCCTCTA+TGG | + | chr5_3:6115104-6115123 | Msa0794250:CDS | 40.0% | |
| TTTGTAATGCATGTGGGGTT+AGG | + | chr5_3:6115155-6115174 | Msa0794250:CDS | 40.0% | |
| AAAAAGTTGGGCTCTTTGCA+GGG | - | chr5_3:6115213-6115232 | None:intergenic | 40.0% | |
| GCACATTGCTGCAAAAAGTT+GGG | - | chr5_3:6115225-6115244 | None:intergenic | 40.0% | |
| TGCACATTGCTGCAAAAAGT+TGG | - | chr5_3:6115226-6115245 | None:intergenic | 40.0% | |
| ATGTGCATTCTAATTCCCAC+AGG | + | chr5_3:6115239-6115258 | Msa0794250:CDS | 40.0% | |
| TAATTCCCACAGGAAAGTAG+TGG | + | chr5_3:6115249-6115268 | Msa0794250:CDS | 40.0% | |
| ! | GGTTTGCTTCGATTGTTCTT+TGG | - | chr5_3:6115359-6115378 | None:intergenic | 40.0% |
| ATGATGACATTTCCTCCCAA+TGG | - | chr5_3:6115386-6115405 | None:intergenic | 40.0% | |
| !!! | CAAAGTGTTTTTGGACCATC+GGG | - | chr5_3:6115445-6115464 | None:intergenic | 40.0% |
| CAAAAAGTTGGGCTATTTGC+AGG | - | chr5_3:6115520-6115539 | None:intergenic | 40.0% | |
| GAAGCAGAAGAGAATGAGAA+TGG | + | chr5_3:6115585-6115604 | Msa0794250:CDS | 40.0% | |
| !! | GCCTTCCAAGCATTTTGGAA+AGG | - | chr5_3:6114336-6114355 | None:intergenic | 45.0% |
| !! | TCTGAGATTTTCAGTGCCTG+CGG | + | chr5_3:6114499-6114518 | Msa0794250:intron | 45.0% |
| GCAAAGAGAGAATCTGTCGT+TGG | - | chr5_3:6114527-6114546 | None:intergenic | 45.0% | |
| ATAGATGTGGCTCCACAACA+CGG | - | chr5_3:6114591-6114610 | None:intergenic | 45.0% | |
| TCCAGGTATCAGAAATGCCA+AGG | - | chr5_3:6114991-6115010 | None:intergenic | 45.0% | |
| ! | GTTGTTTCCACGCGAATTGA+TGG | - | chr5_3:6115015-6115034 | None:intergenic | 45.0% |
| GCGAAACAAACCTCAACCAT+TGG | + | chr5_3:6115061-6115080 | Msa0794250:CDS | 45.0% | |
| AACAAACCTCAACCATTGGG+AGG | + | chr5_3:6115065-6115084 | Msa0794250:CDS | 45.0% | |
| ATGATGACATTGCCTCCCAA+TGG | - | chr5_3:6115080-6115099 | None:intergenic | 45.0% | |
| !!! | CAAAGTGTTTTTGGACCAGC+AGG | - | chr5_3:6115139-6115158 | None:intergenic | 45.0% |
| ATGCATGTGGGGTTAGGTAT+AGG | + | chr5_3:6115161-6115180 | Msa0794250:CDS | 45.0% | |
| CAAAAAGTTGGGCTCTTTGC+AGG | - | chr5_3:6115214-6115233 | None:intergenic | 45.0% | |
| TCCATGTGTCAGAAATGCCA+AGG | - | chr5_3:6115297-6115316 | None:intergenic | 45.0% | |
| ! | GCTGTTTCCACGTGAATTGA+CGG | - | chr5_3:6115321-6115340 | None:intergenic | 45.0% |
| TCGAAGCAAACCTCAACCAT+TGG | + | chr5_3:6115367-6115386 | Msa0794250:CDS | 45.0% | |
| CGAAGCAAACCTCAACCATT+GGG | + | chr5_3:6115368-6115387 | Msa0794250:CDS | 45.0% | |
| ACATTTCCTCCCAATGGTTG+AGG | - | chr5_3:6115380-6115399 | None:intergenic | 45.0% | |
| GGGAGGAAATGTCATCATTG+TGG | + | chr5_3:6115388-6115407 | Msa0794250:CDS | 45.0% | |
| GAGCTGATAATACTCCGCAA+TGG | + | chr5_3:6115410-6115429 | Msa0794250:CDS | 45.0% | |
| TTTGTAATGCATGTGGGGTC+AGG | + | chr5_3:6115461-6115480 | Msa0794250:CDS | 45.0% | |
| TAATGCCCACAGGAAAGTAG+TGG | + | chr5_3:6115555-6115574 | Msa0794250:CDS | 45.0% | |
| CAGAAGAGAATGAGAATGGG+AGG | + | chr5_3:6115589-6115608 | Msa0794250:CDS | 45.0% | |
| !! | GCCTTCCAAGCATTTTGGAA+AGG | - | chr5_3:6114336-6114355 | None:intergenic | 45.0% |
| !! | TCTGAGATTTTCAGTGCCTG+CGG | + | chr5_3:6114499-6114518 | Msa0794250:intron | 45.0% |
| GCAAAGAGAGAATCTGTCGT+TGG | - | chr5_3:6114527-6114546 | None:intergenic | 45.0% | |
| ATAGATGTGGCTCCACAACA+CGG | - | chr5_3:6114591-6114610 | None:intergenic | 45.0% | |
| TCCAGGTATCAGAAATGCCA+AGG | - | chr5_3:6114991-6115010 | None:intergenic | 45.0% | |
| ! | GTTGTTTCCACGCGAATTGA+TGG | - | chr5_3:6115015-6115034 | None:intergenic | 45.0% |
| GCGAAACAAACCTCAACCAT+TGG | + | chr5_3:6115061-6115080 | Msa0794250:CDS | 45.0% | |
| AACAAACCTCAACCATTGGG+AGG | + | chr5_3:6115065-6115084 | Msa0794250:CDS | 45.0% | |
| ATGATGACATTGCCTCCCAA+TGG | - | chr5_3:6115080-6115099 | None:intergenic | 45.0% | |
| !!! | CAAAGTGTTTTTGGACCAGC+AGG | - | chr5_3:6115139-6115158 | None:intergenic | 45.0% |
| ATGCATGTGGGGTTAGGTAT+AGG | + | chr5_3:6115161-6115180 | Msa0794250:CDS | 45.0% | |
| CAAAAAGTTGGGCTCTTTGC+AGG | - | chr5_3:6115214-6115233 | None:intergenic | 45.0% | |
| TCCATGTGTCAGAAATGCCA+AGG | - | chr5_3:6115297-6115316 | None:intergenic | 45.0% | |
| ! | GCTGTTTCCACGTGAATTGA+CGG | - | chr5_3:6115321-6115340 | None:intergenic | 45.0% |
| TCGAAGCAAACCTCAACCAT+TGG | + | chr5_3:6115367-6115386 | Msa0794250:CDS | 45.0% | |
| CGAAGCAAACCTCAACCATT+GGG | + | chr5_3:6115368-6115387 | Msa0794250:CDS | 45.0% | |
| ACATTTCCTCCCAATGGTTG+AGG | - | chr5_3:6115380-6115399 | None:intergenic | 45.0% | |
| GGGAGGAAATGTCATCATTG+TGG | + | chr5_3:6115388-6115407 | Msa0794250:CDS | 45.0% | |
| GAGCTGATAATACTCCGCAA+TGG | + | chr5_3:6115410-6115429 | Msa0794250:CDS | 45.0% | |
| TTTGTAATGCATGTGGGGTC+AGG | + | chr5_3:6115461-6115480 | Msa0794250:CDS | 45.0% | |
| TAATGCCCACAGGAAAGTAG+TGG | + | chr5_3:6115555-6115574 | Msa0794250:CDS | 45.0% | |
| GATGGAGGCTCTTGATTCTG+TGG | + | chr5_3:6114196-6114215 | Msa0794250:exon | 50.0% | |
| ! | TCACGGCCTTCCAAGCATTT+TGG | - | chr5_3:6114341-6114360 | None:intergenic | 50.0% |
| !! | GCCGCTTGTTTTCATGTTCC+AGG | + | chr5_3:6114655-6114674 | Msa0794250:intron | 50.0% |
| !! | GCCGCTTGTTTTCATGTTCC+AGG | + | chr5_3:6114655-6114674 | Msa0794250:intron | 50.0% |
| GTTCCAGGAGTTTGCAGTAG+AGG | + | chr5_3:6114736-6114755 | Msa0794250:intron | 50.0% | |
| GATCCTCTACTGCAAACTCC+TGG | - | chr5_3:6114742-6114761 | None:intergenic | 50.0% | |
| GTATCAGAAATGCCAAGGCG+AGG | - | chr5_3:6114986-6115005 | None:intergenic | 50.0% | |
| GCCTTGGCATTTCTGATACC+TGG | + | chr5_3:6114987-6115006 | Msa0794250:CDS | 50.0% | |
| ACATTGCCTCCCAATGGTTG+AGG | - | chr5_3:6115074-6115093 | None:intergenic | 50.0% | |
| GGGAGGCAATGTCATCATTG+TGG | + | chr5_3:6115082-6115101 | Msa0794250:CDS | 50.0% | |
| AATACTCCTCTATGGCGTGC+AGG | + | chr5_3:6115112-6115131 | Msa0794250:CDS | 50.0% | |
| TGTGGGGTTAGGTATAGGTC+TGG | + | chr5_3:6115166-6115185 | Msa0794250:CDS | 50.0% | |
| GGCGGTATTCAGGTACAAGT+CGG | - | chr5_3:6115192-6115211 | None:intergenic | 50.0% | |
| ATTCGTAGTAAGCCTCGCCT+TGG | + | chr5_3:6115277-6115296 | Msa0794250:CDS | 50.0% | |
| GCCTTGGCATTTCTGACACA+TGG | + | chr5_3:6115293-6115312 | Msa0794250:CDS | 50.0% | |
| CATGGAACCGTCAATTCACG+TGG | + | chr5_3:6115311-6115330 | Msa0794250:CDS | 50.0% | |
| AGCAAACCTCAACCATTGGG+AGG | + | chr5_3:6115371-6115390 | Msa0794250:CDS | 50.0% | |
| ATGCATGTGGGGTCAGGTAT+AGG | + | chr5_3:6115467-6115486 | Msa0794250:CDS | 50.0% | |
| CTATTTGCAGGGCGGTATTC+AGG | - | chr5_3:6115508-6115527 | None:intergenic | 50.0% | |
| AAGTTGGGCTATTTGCAGGG+CGG | - | chr5_3:6115516-6115535 | None:intergenic | 50.0% | |
| GCACGTCGCTGCAAAAAGTT+GGG | - | chr5_3:6115531-6115550 | None:intergenic | 50.0% | |
| TGCACGTCGCTGCAAAAAGT+TGG | - | chr5_3:6115532-6115551 | None:intergenic | 50.0% | |
| ACGTGCATTCTAATGCCCAC+AGG | + | chr5_3:6115545-6115564 | Msa0794250:CDS | 50.0% | |
| GATGGAGGCTCTTGATTCTG+TGG | + | chr5_3:6114196-6114215 | Msa0794250:exon | 50.0% | |
| ! | TCACGGCCTTCCAAGCATTT+TGG | - | chr5_3:6114341-6114360 | None:intergenic | 50.0% |
| !! | GCCGCTTGTTTTCATGTTCC+AGG | + | chr5_3:6114655-6114674 | Msa0794250:intron | 50.0% |
| !! | GCCGCTTGTTTTCATGTTCC+AGG | + | chr5_3:6114655-6114674 | Msa0794250:intron | 50.0% |
| GTTCCAGGAGTTTGCAGTAG+AGG | + | chr5_3:6114736-6114755 | Msa0794250:intron | 50.0% | |
| GATCCTCTACTGCAAACTCC+TGG | - | chr5_3:6114742-6114761 | None:intergenic | 50.0% | |
| GTATCAGAAATGCCAAGGCG+AGG | - | chr5_3:6114986-6115005 | None:intergenic | 50.0% | |
| GCCTTGGCATTTCTGATACC+TGG | + | chr5_3:6114987-6115006 | Msa0794250:CDS | 50.0% | |
| ACATTGCCTCCCAATGGTTG+AGG | - | chr5_3:6115074-6115093 | None:intergenic | 50.0% | |
| GGGAGGCAATGTCATCATTG+TGG | + | chr5_3:6115082-6115101 | Msa0794250:CDS | 50.0% | |
| AATACTCCTCTATGGCGTGC+AGG | + | chr5_3:6115112-6115131 | Msa0794250:CDS | 50.0% | |
| TGTGGGGTTAGGTATAGGTC+TGG | + | chr5_3:6115166-6115185 | Msa0794250:CDS | 50.0% | |
| GGCGGTATTCAGGTACAAGT+CGG | - | chr5_3:6115192-6115211 | None:intergenic | 50.0% | |
| ATTCGTAGTAAGCCTCGCCT+TGG | + | chr5_3:6115277-6115296 | Msa0794250:CDS | 50.0% | |
| GCCTTGGCATTTCTGACACA+TGG | + | chr5_3:6115293-6115312 | Msa0794250:CDS | 50.0% | |
| CATGGAACCGTCAATTCACG+TGG | + | chr5_3:6115311-6115330 | Msa0794250:CDS | 50.0% | |
| AGCAAACCTCAACCATTGGG+AGG | + | chr5_3:6115371-6115390 | Msa0794250:CDS | 50.0% | |
| ATGCATGTGGGGTCAGGTAT+AGG | + | chr5_3:6115467-6115486 | Msa0794250:CDS | 50.0% | |
| CTATTTGCAGGGCGGTATTC+AGG | - | chr5_3:6115508-6115527 | None:intergenic | 50.0% | |
| AAGTTGGGCTATTTGCAGGG+CGG | - | chr5_3:6115516-6115535 | None:intergenic | 50.0% | |
| GCACGTCGCTGCAAAAAGTT+GGG | - | chr5_3:6115531-6115550 | None:intergenic | 50.0% | |
| TGCACGTCGCTGCAAAAAGT+TGG | - | chr5_3:6115532-6115551 | None:intergenic | 50.0% | |
| ACGTGCATTCTAATGCCCAC+AGG | + | chr5_3:6115545-6115564 | Msa0794250:CDS | 50.0% | |
| TGAAGTTCCCTGTCCGTGCA+CGG | + | chr5_3:6114942-6114961 | Msa0794250:CDS | 55.0% | |
| ! | TGTGAGACTTGCTCCGTGCA+CGG | - | chr5_3:6114958-6114977 | None:intergenic | 55.0% |
| TCTCACAGTAAGCCTCGCCT+TGG | + | chr5_3:6114971-6114990 | Msa0794250:CDS | 55.0% | |
| ! | CCACGCGAATTGATGGTTCC+AGG | - | chr5_3:6115008-6115027 | None:intergenic | 55.0% |
| CCTGGAACCATCAATTCGCG+TGG | + | chr5_3:6115005-6115024 | Msa0794250:CDS | 55.0% | |
| CTCTTTGCAGGGCGGTATTC+AGG | - | chr5_3:6115202-6115221 | None:intergenic | 55.0% | |
| AAGTTGGGCTCTTTGCAGGG+CGG | - | chr5_3:6115210-6115229 | None:intergenic | 55.0% | |
| GTGTCAGAAATGCCAAGGCG+AGG | - | chr5_3:6115292-6115311 | None:intergenic | 55.0% | |
| AATACTCCGCAATGGCGTGC+AGG | + | chr5_3:6115418-6115437 | Msa0794250:CDS | 55.0% | |
| TGTGGGGTCAGGTATAGGTC+TGG | + | chr5_3:6115472-6115491 | Msa0794250:CDS | 55.0% | |
| TGAAGTTCCCTGTCCGTGCA+CGG | + | chr5_3:6114942-6114961 | Msa0794250:CDS | 55.0% | |
| ! | TGTGAGACTTGCTCCGTGCA+CGG | - | chr5_3:6114958-6114977 | None:intergenic | 55.0% |
| TCTCACAGTAAGCCTCGCCT+TGG | + | chr5_3:6114971-6114990 | Msa0794250:CDS | 55.0% | |
| ! | CCACGCGAATTGATGGTTCC+AGG | - | chr5_3:6115008-6115027 | None:intergenic | 55.0% |
| CCTGGAACCATCAATTCGCG+TGG | + | chr5_3:6115005-6115024 | Msa0794250:CDS | 55.0% | |
| CTCTTTGCAGGGCGGTATTC+AGG | - | chr5_3:6115202-6115221 | None:intergenic | 55.0% | |
| AAGTTGGGCTCTTTGCAGGG+CGG | - | chr5_3:6115210-6115229 | None:intergenic | 55.0% | |
| GTGTCAGAAATGCCAAGGCG+AGG | - | chr5_3:6115292-6115311 | None:intergenic | 55.0% | |
| AATACTCCGCAATGGCGTGC+AGG | + | chr5_3:6115418-6115437 | Msa0794250:CDS | 55.0% | |
| TGTGGGGTCAGGTATAGGTC+TGG | + | chr5_3:6115472-6115491 | Msa0794250:CDS | 55.0% | |
| GAATCTGTCGTTGGCACCGC+AGG | - | chr5_3:6114518-6114537 | None:intergenic | 60.0% | |
| ACTTGCTCCGTGCACGGACA+GGG | - | chr5_3:6114952-6114971 | None:intergenic | 60.0% | |
| GAATCTGTCGTTGGCACCGC+AGG | - | chr5_3:6114518-6114537 | None:intergenic | 60.0% | |
| ACTTGCTCCGTGCACGGACA+GGG | - | chr5_3:6114952-6114971 | None:intergenic | 60.0% | |
| ! | GACTTGCTCCGTGCACGGAC+AGG | - | chr5_3:6114953-6114972 | None:intergenic | 65.0% |
| GCAGGACCTGCACGCCATAG+AGG | - | chr5_3:6115121-6115140 | None:intergenic | 65.0% | |
| CTATGGCGTGCAGGTCCTGC+TGG | + | chr5_3:6115121-6115140 | Msa0794250:CDS | 65.0% | |
| TCGGGACCTGCACGCCATTG+CGG | - | chr5_3:6115427-6115446 | None:intergenic | 65.0% | |
| CAATGGCGTGCAGGTCCCGA+TGG | + | chr5_3:6115427-6115446 | Msa0794250:CDS | 65.0% | |
| ! | GACTTGCTCCGTGCACGGAC+AGG | - | chr5_3:6114953-6114972 | None:intergenic | 65.0% |
| GCAGGACCTGCACGCCATAG+AGG | - | chr5_3:6115121-6115140 | None:intergenic | 65.0% | |
| CTATGGCGTGCAGGTCCTGC+TGG | + | chr5_3:6115121-6115140 | Msa0794250:CDS | 65.0% | |
| TCGGGACCTGCACGCCATTG+CGG | - | chr5_3:6115427-6115446 | None:intergenic | 65.0% | |
| CAATGGCGTGCAGGTCCCGA+TGG | + | chr5_3:6115427-6115446 | Msa0794250:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 6114195 | 6115609 | 6114195 | ID=Msa0794250;Name=Msa0794250 |
| chr5_3 | mRNA | 6114195 | 6115609 | 6114195 | ID=Msa0794250-mRNA-1;Parent=Msa0794250;Name=Msa0794250-mRNA-1;_AED=0.01;_eAED=0.01;_QI=2|0|0|1|1|0.5|2|0|331 |
| chr5_3 | exon | 6114195 | 6114322 | 6114195 | ID=Msa0794250-mRNA-1:exon:2457;Parent=Msa0794250-mRNA-1 |
| chr5_3 | exon | 6114743 | 6115609 | 6114743 | ID=Msa0794250-mRNA-1:exon:2458;Parent=Msa0794250-mRNA-1 |
| chr5_3 | five_prime_UTR | 6114195 | 6114196 | 6114195 | ID=Msa0794250-mRNA-1:five_prime_utr;Parent=Msa0794250-mRNA-1 |
| chr5_3 | CDS | 6114197 | 6114322 | 6114197 | ID=Msa0794250-mRNA-1:cds;Parent=Msa0794250-mRNA-1 |
| chr5_3 | CDS | 6114743 | 6115609 | 6114743 | ID=Msa0794250-mRNA-1:cds;Parent=Msa0794250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
