Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0796730 | sp|O04086|Y1105_ARATH | 59.770 | 87 | 28 | 3 | 421 | 500 | 514 | 600 | 4.02e-23 | 106 |
Msa0796730 | sp|O04086|Y1105_ARATH | 48.750 | 80 | 41 | 0 | 345 | 424 | 282 | 361 | 1.15e-14 | 80.5 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0796730 | G7K1P7 | 50.470 | 319 | 144 | 5 | 5 | 322 | 2 | 307 | 3.06e-95 | 308 |
Gene ID | Type | Classification |
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Gene ID | Type | Classification |
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Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
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PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0796730 | MtrunA17_Chr6g0469931 | 54.231 | 260 | 97 | 6 | 5 | 259 | 2 | 244 | 6.86e-80 | 262 |
Msa0796730 | MtrunA17_Chr1g0159611 | 56.497 | 177 | 66 | 4 | 337 | 506 | 367 | 539 | 6.79e-46 | 169 |
Msa0796730 | MtrunA17_Chr1g0159611 | 76.543 | 81 | 17 | 1 | 338 | 418 | 221 | 299 | 4.28e-29 | 120 |
Msa0796730 | MtrunA17_Chr6g0469811 | 50.704 | 142 | 69 | 1 | 5 | 146 | 11 | 151 | 3.51e-39 | 139 |
Msa0796730 | MtrunA17_Chr2g0277731 | 56.667 | 90 | 32 | 1 | 418 | 500 | 527 | 616 | 2.32e-26 | 113 |
Msa0796730 | MtrunA17_Chr2g0277731 | 38.168 | 131 | 67 | 2 | 345 | 474 | 291 | 408 | 4.41e-19 | 90.5 |
Msa0796730 | MtrunA17_Chr2g0278111 | 26.481 | 287 | 197 | 4 | 15 | 298 | 11 | 286 | 1.13e-24 | 104 |
Msa0796730 | MtrunA17_Chr5g0411141 | 26.481 | 287 | 197 | 4 | 15 | 298 | 12 | 287 | 1.22e-24 | 104 |
Msa0796730 | MtrunA17_Chr7g0259081 | 35.429 | 175 | 105 | 3 | 9 | 183 | 6 | 172 | 1.46e-24 | 100 |
Msa0796730 | MtrunA17_Chr7g0234721 | 36.000 | 175 | 104 | 3 | 9 | 183 | 6 | 172 | 1.39e-23 | 100 |
Msa0796730 | MtrunA17_Chr5g0423441 | 26.250 | 240 | 165 | 3 | 15 | 253 | 11 | 239 | 2.11e-22 | 96.7 |
Msa0796730 | MtrunA17_Chr2g0280031 | 27.092 | 251 | 166 | 6 | 26 | 268 | 3 | 244 | 1.86e-21 | 94.0 |
Msa0796730 | MtrunA17_Chr4g0010241 | 36.242 | 149 | 89 | 1 | 55 | 203 | 70 | 212 | 3.05e-21 | 92.4 |
Msa0796730 | MtrunA17_Chr3g0093401 | 26.582 | 237 | 156 | 4 | 21 | 257 | 17 | 235 | 3.89e-20 | 89.7 |
Msa0796730 | MtrunA17_Chr1g0193821 | 27.203 | 261 | 129 | 5 | 66 | 300 | 2 | 227 | 1.49e-19 | 88.2 |
Msa0796730 | MtrunA17_Chr5g0421841 | 26.761 | 213 | 143 | 4 | 14 | 225 | 10 | 210 | 3.43e-19 | 86.3 |
Msa0796730 | MtrunA17_Chr1g0206481 | 25.833 | 240 | 160 | 4 | 23 | 258 | 19 | 244 | 3.88e-19 | 87.8 |
Msa0796730 | MtrunA17_Chr2g0309041 | 46.392 | 97 | 52 | 0 | 48 | 144 | 1 | 97 | 8.97e-19 | 81.6 |
Msa0796730 | MtrunA17_Chr8g0380681 | 51.807 | 83 | 37 | 2 | 421 | 500 | 1203 | 1285 | 1.16e-18 | 90.1 |
Msa0796730 | MtrunA17_Chr8g0380681 | 50.588 | 85 | 37 | 3 | 421 | 500 | 533 | 617 | 8.09e-16 | 80.9 |
Msa0796730 | MtrunA17_Chr8g0380681 | 45.263 | 95 | 49 | 2 | 332 | 424 | 283 | 376 | 7.98e-14 | 74.7 |
Msa0796730 | MtrunA17_Chr8g0380681 | 40.196 | 102 | 59 | 1 | 340 | 439 | 959 | 1060 | 2.56e-12 | 69.7 |
Msa0796730 | MtrunA17_Chr5g0399591 | 100.000 | 37 | 0 | 0 | 313 | 349 | 251 | 287 | 1.52e-17 | 86.3 |
Msa0796730 | MtrunA17_Chr5g0399561 | 97.297 | 37 | 1 | 0 | 313 | 349 | 252 | 288 | 7.00e-17 | 84.0 |
Msa0796730 | MtrunA17_Chr7g0259211 | 44.444 | 81 | 41 | 1 | 342 | 418 | 265 | 345 | 5.11e-13 | 71.6 |
Msa0796730 | MtrunA17_Chr7g0270381 | 29.070 | 172 | 107 | 6 | 152 | 322 | 1 | 158 | 1.49e-12 | 65.9 |
Msa0796730 | MtrunA17_Chr1g0196391 | 34.211 | 76 | 48 | 2 | 422 | 495 | 512 | 587 | 2.08e-12 | 69.7 |
Msa0796730 | MtrunA17_Chr1g0196391 | 45.455 | 66 | 36 | 0 | 353 | 418 | 291 | 356 | 1.45e-11 | 67.0 |
Msa0796730 | MtrunA17_Chr8g0342071 | 41.573 | 89 | 48 | 1 | 352 | 436 | 444 | 532 | 2.35e-12 | 69.7 |
Msa0796730 | MtrunA17_Chr5g0421741 | 29.365 | 126 | 89 | 0 | 13 | 138 | 9 | 134 | 4.99e-12 | 64.7 |
Msa0796730 | MtrunA17_Chr1g0148711 | 29.365 | 126 | 89 | 0 | 13 | 138 | 9 | 134 | 4.99e-12 | 64.7 |
Msa0796730 | MtrunA17_Chr8g0365691 | 45.333 | 75 | 41 | 0 | 355 | 429 | 308 | 382 | 6.94e-12 | 67.8 |
Msa0796730 | MtrunA17_Chr7g0262521 | 41.111 | 90 | 48 | 2 | 352 | 436 | 340 | 429 | 8.14e-12 | 67.8 |
Msa0796730 | MtrunA17_Chr1g0206291 | 40.385 | 104 | 58 | 2 | 318 | 417 | 310 | 413 | 9.24e-12 | 67.4 |
Msa0796730 | MtrunA17_Chr5g0427001 | 47.059 | 68 | 34 | 1 | 353 | 418 | 64 | 131 | 1.06e-11 | 65.5 |
Msa0796730 | MtrunA17_Chr8g0375511 | 50.769 | 65 | 32 | 0 | 353 | 417 | 835 | 899 | 1.19e-11 | 67.8 |
Msa0796730 | MtrunA17_Chr4g0071221 | 45.455 | 66 | 36 | 0 | 352 | 417 | 533 | 598 | 1.29e-11 | 67.4 |
Msa0796730 | MtrunA17_Chr8g0354311 | 48.438 | 64 | 33 | 0 | 354 | 417 | 35 | 98 | 1.50e-11 | 62.0 |
Msa0796730 | MtrunA17_Chr2g0315151 | 44.737 | 76 | 42 | 0 | 342 | 417 | 650 | 725 | 1.69e-11 | 67.0 |
Msa0796730 | MtrunA17_Chr1g0206551 | 45.205 | 73 | 37 | 1 | 345 | 417 | 26 | 95 | 3.09e-11 | 65.1 |
Msa0796730 | MtrunA17_Chr7g0221191 | 39.286 | 84 | 51 | 0 | 334 | 417 | 371 | 454 | 3.28e-11 | 65.9 |
Msa0796730 | MtrunA17_Chr8g0364671 | 39.286 | 84 | 49 | 1 | 336 | 417 | 39 | 122 | 4.02e-11 | 64.7 |
Msa0796730 | MtrunA17_Chr8g0389251 | 43.662 | 71 | 40 | 0 | 354 | 424 | 400 | 470 | 4.57e-11 | 65.5 |
Msa0796730 | MtrunA17_Chr6g0475111 | 33.594 | 128 | 77 | 2 | 352 | 479 | 582 | 701 | 6.02e-11 | 65.1 |
Msa0796730 | MtrunA17_Chr2g0333181 | 38.272 | 81 | 48 | 1 | 340 | 418 | 20 | 100 | 6.42e-11 | 63.9 |
Msa0796730 | MtrunA17_Chr3g0144551 | 36.986 | 73 | 46 | 0 | 345 | 417 | 121 | 193 | 6.42e-11 | 64.3 |
Msa0796730 | MtrunA17_Chr8g0348451 | 38.356 | 73 | 45 | 0 | 345 | 417 | 131 | 203 | 7.22e-11 | 64.3 |
Msa0796730 | MtrunA17_Chr5g0413981 | 37.931 | 87 | 49 | 2 | 336 | 417 | 39 | 125 | 7.31e-11 | 63.9 |
Msa0796730 | MtrunA17_Chr8g0360591 | 45.070 | 71 | 39 | 0 | 354 | 424 | 40 | 110 | 7.96e-11 | 63.9 |
Msa0796730 | MtrunA17_Chr5g0394001 | 44.595 | 74 | 41 | 0 | 352 | 425 | 324 | 397 | 8.53e-11 | 64.7 |
Msa0796730 | MtrunA17_Chr5g0432871 | 50.000 | 64 | 32 | 0 | 354 | 417 | 612 | 675 | 9.48e-11 | 64.7 |
Msa0796730 | MtrunA17_Chr3g0129391 | 46.154 | 65 | 35 | 0 | 353 | 417 | 870 | 934 | 9.64e-11 | 64.7 |
Msa0796730 | MtrunA17_Chr2g0299301 | 41.429 | 70 | 41 | 0 | 348 | 417 | 1050 | 1119 | 9.92e-11 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0796730 | AT1G11050.1 | 59.770 | 87 | 28 | 3 | 421 | 500 | 514 | 600 | 4.09e-24 | 106 |
Msa0796730 | AT1G11050.1 | 48.750 | 80 | 41 | 0 | 345 | 424 | 282 | 361 | 1.16e-15 | 80.5 |
Msa0796730 | AT1G52950.1 | 28.571 | 308 | 191 | 12 | 21 | 320 | 19 | 305 | 4.85e-20 | 94.0 |
Msa0796730 | AT2G48010.1 | 51.515 | 66 | 32 | 0 | 353 | 418 | 278 | 343 | 7.76e-14 | 74.7 |
Msa0796730 | AT5G18500.2 | 30.412 | 194 | 119 | 5 | 227 | 417 | 45 | 225 | 4.81e-13 | 71.6 |
Msa0796730 | AT5G18500.5 | 30.412 | 194 | 119 | 5 | 227 | 417 | 45 | 225 | 4.81e-13 | 71.6 |
Msa0796730 | AT5G18500.4 | 30.412 | 194 | 119 | 5 | 227 | 417 | 45 | 225 | 4.81e-13 | 71.6 |
Msa0796730 | AT5G18500.1 | 30.412 | 194 | 119 | 5 | 227 | 417 | 45 | 225 | 4.81e-13 | 71.6 |
Msa0796730 | AT5G18500.3 | 30.412 | 194 | 119 | 5 | 227 | 417 | 45 | 225 | 4.81e-13 | 71.6 |
Msa0796730 | AT5G18500.6 | 30.412 | 194 | 119 | 5 | 227 | 417 | 45 | 225 | 4.81e-13 | 71.6 |
Msa0796730 | AT5G56890.1 | 40.909 | 88 | 48 | 1 | 353 | 436 | 718 | 805 | 1.71e-12 | 70.9 |
Msa0796730 | AT4G23230.1 | 53.125 | 64 | 30 | 0 | 354 | 417 | 333 | 396 | 6.10e-12 | 68.6 |
Msa0796730 | AT2G20300.1 | 39.326 | 89 | 50 | 1 | 352 | 436 | 343 | 431 | 8.43e-12 | 68.2 |
Msa0796730 | AT1G23540.2 | 45.070 | 71 | 39 | 0 | 355 | 425 | 368 | 438 | 8.53e-12 | 67.8 |
Msa0796730 | AT1G01540.2 | 39.726 | 73 | 44 | 0 | 345 | 417 | 141 | 213 | 8.74e-12 | 67.8 |
Msa0796730 | AT2G05642.1 | 24.219 | 256 | 124 | 6 | 23 | 257 | 19 | 225 | 1.06e-11 | 67.8 |
Msa0796730 | AT1G01540.1 | 39.726 | 73 | 44 | 0 | 345 | 417 | 141 | 213 | 1.19e-11 | 67.0 |
Msa0796730 | AT1G68690.1 | 49.231 | 65 | 33 | 0 | 353 | 417 | 372 | 436 | 1.19e-11 | 67.8 |
Msa0796730 | AT1G68690.3 | 49.231 | 65 | 33 | 0 | 353 | 417 | 372 | 436 | 1.19e-11 | 67.8 |
Msa0796730 | AT1G68690.2 | 49.231 | 65 | 33 | 0 | 353 | 417 | 372 | 436 | 1.19e-11 | 67.8 |
Msa0796730 | AT1G68690.4 | 49.231 | 65 | 33 | 0 | 353 | 417 | 372 | 436 | 1.21e-11 | 67.8 |
Msa0796730 | AT3G24540.1 | 47.692 | 65 | 34 | 0 | 353 | 417 | 178 | 242 | 1.29e-11 | 67.4 |
Msa0796730 | AT1G23540.1 | 45.070 | 71 | 39 | 0 | 355 | 425 | 368 | 438 | 1.40e-11 | 67.4 |
Msa0796730 | AT2G01950.1 | 50.769 | 65 | 32 | 0 | 353 | 417 | 833 | 897 | 1.53e-11 | 67.8 |
Msa0796730 | AT1G09440.1 | 42.466 | 73 | 42 | 0 | 345 | 417 | 144 | 216 | 1.82e-11 | 66.6 |
Msa0796730 | AT1G09440.2 | 42.466 | 73 | 42 | 0 | 345 | 417 | 144 | 216 | 1.82e-11 | 66.6 |
Msa0796730 | AT1G56720.3 | 42.466 | 73 | 42 | 0 | 345 | 417 | 166 | 238 | 1.89e-11 | 66.6 |
Msa0796730 | AT1G56720.1 | 42.466 | 73 | 42 | 0 | 345 | 417 | 166 | 238 | 1.89e-11 | 66.6 |
Msa0796730 | AT1G56720.2 | 42.466 | 73 | 42 | 0 | 345 | 417 | 166 | 238 | 1.89e-11 | 66.6 |
Msa0796730 | AT1G56720.4 | 42.466 | 73 | 42 | 0 | 345 | 417 | 166 | 238 | 1.89e-11 | 66.6 |
Msa0796730 | AT1G65790.1 | 46.875 | 64 | 34 | 0 | 354 | 417 | 515 | 578 | 2.54e-11 | 67.0 |
Msa0796730 | AT1G65790.3 | 46.875 | 64 | 34 | 0 | 354 | 417 | 515 | 578 | 2.65e-11 | 66.6 |
Msa0796730 | AT1G65790.2 | 46.875 | 64 | 34 | 0 | 354 | 417 | 515 | 578 | 2.65e-11 | 66.6 |
Msa0796730 | AT4G01330.3 | 30.147 | 136 | 90 | 3 | 285 | 417 | 88 | 221 | 3.69e-11 | 65.9 |
Msa0796730 | AT3G13380.1 | 49.231 | 65 | 33 | 0 | 353 | 417 | 853 | 917 | 4.16e-11 | 66.2 |
Msa0796730 | AT1G65800.2 | 46.875 | 64 | 34 | 0 | 354 | 417 | 519 | 582 | 4.42e-11 | 65.9 |
Msa0796730 | AT4G01330.2 | 39.726 | 73 | 44 | 0 | 345 | 417 | 149 | 221 | 4.55e-11 | 65.5 |
Msa0796730 | AT1G65800.1 | 46.875 | 64 | 34 | 0 | 354 | 417 | 519 | 582 | 4.71e-11 | 65.9 |
Msa0796730 | AT4G01330.1 | 39.726 | 73 | 44 | 0 | 345 | 417 | 149 | 221 | 4.91e-11 | 65.5 |
Msa0796730 | AT5G38560.1 | 38.095 | 84 | 52 | 0 | 342 | 425 | 323 | 406 | 5.59e-11 | 65.5 |
Msa0796730 | AT1G24030.5 | 32.710 | 107 | 66 | 2 | 314 | 417 | 21 | 124 | 6.11e-11 | 63.5 |
Msa0796730 | AT4G23150.1 | 46.377 | 69 | 37 | 0 | 349 | 417 | 327 | 395 | 7.05e-11 | 65.1 |
Msa0796730 | AT1G55610.1 | 47.692 | 65 | 34 | 0 | 353 | 417 | 854 | 918 | 7.30e-11 | 65.5 |
Msa0796730 | AT1G55610.2 | 47.692 | 65 | 34 | 0 | 353 | 417 | 854 | 918 | 7.30e-11 | 65.5 |
Msa0796730 | AT4G02630.1 | 36.986 | 73 | 46 | 0 | 345 | 417 | 149 | 221 | 7.63e-11 | 64.7 |
Msa0796730 | AT1G70450.1 | 45.714 | 70 | 38 | 0 | 355 | 424 | 46 | 115 | 8.21e-11 | 64.3 |
Msa0796730 | AT1G52290.2 | 36.283 | 113 | 61 | 2 | 311 | 423 | 107 | 208 | 8.42e-11 | 64.3 |
Msa0796730 | AT4G35030.8 | 31.783 | 129 | 84 | 1 | 312 | 436 | 58 | 186 | 9.64e-11 | 63.5 |
Msa0796730 | AT4G35030.1 | 31.783 | 129 | 84 | 1 | 312 | 436 | 58 | 186 | 9.64e-11 | 63.5 |
Find 105 sgRNAs with CRISPR-Local
Find 353 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCTTAGCAGTTGTTCTTAC+AGG | 0.185850 | 5_3:+8708872 | Msa0796730:CDS |
TTGCTGTCTGATGTTGTTCC+TGG | 0.217995 | 5_3:+8708565 | Msa0796730:CDS |
GATTCTGCAATAGACTTCTT+TGG | 0.221362 | 5_3:-8709892 | None:intergenic |
GACCTTCAACCAACTTCTTA+TGG | 0.223086 | 5_3:-8708819 | None:intergenic |
AGAGCAACACTTGATTATTA+TGG | 0.224452 | 5_3:+8710787 | Msa0796730:CDS |
TGCCCTGGATGAAGAAAATT+TGG | 0.267830 | 5_3:-8708640 | None:intergenic |
GGTCCCTTGCTTCCCATGTT+TGG | 0.272496 | 5_3:+8708955 | Msa0796730:CDS |
ACAGGCCTATCTGGTAAATT+AGG | 0.290052 | 5_3:-8714027 | None:intergenic |
AGCTCCATTGTGCCGCTTAT+TGG | 0.310332 | 5_3:+8709823 | Msa0796730:CDS |
ATTGTTTGTGCTACAATTGA+TGG | 0.320454 | 5_3:+8709943 | Msa0796730:CDS |
CCAAGTGGAACAGGCCTATC+TGG | 0.332287 | 5_3:-8714036 | None:intergenic |
ATAAATATTCTTGCTTTAAG+AGG | 0.337370 | 5_3:+8713355 | Msa0796730:CDS |
AATTGTTGTCCACAGTTTGA+TGG | 0.338565 | 5_3:-8709008 | None:intergenic |
GCTTGGACACTTGCAAAATC+AGG | 0.339654 | 5_3:+8713847 | Msa0796730:CDS |
AGAGGTAAGGGAGTATATTA+AGG | 0.340231 | 5_3:+8709197 | Msa0796730:CDS |
TATCCGGATTGATCATAATT+CGG | 0.349173 | 5_3:-8709642 | None:intergenic |
GTGGACAACAATTATTTGAT+TGG | 0.351974 | 5_3:+8709018 | Msa0796730:CDS |
TTCCTGGATGGGATCGGTCT+TGG | 0.362083 | 5_3:+8708581 | Msa0796730:CDS |
AGTTTGGATGTTAATTCAAT+TGG | 0.382739 | 5_3:+8709796 | Msa0796730:intron |
CTCATGCAATGGTTGCATTA+AGG | 0.388948 | 5_3:+8713956 | Msa0796730:CDS |
TTGCAGAATCGAAGGAAGTT+GGG | 0.403544 | 5_3:+8709905 | Msa0796730:CDS |
ATCCGGATTGATCATAATTC+GGG | 0.405479 | 5_3:-8709641 | None:intergenic |
AAATGTGAGACTGCTCTGTT+TGG | 0.410986 | 5_3:+8709386 | Msa0796730:CDS |
ATATTCCTAATTTACCAGAT+AGG | 0.413784 | 5_3:+8714022 | Msa0796730:CDS |
GTCTGATGTTGTTCCTGGAT+GGG | 0.416737 | 5_3:+8708570 | Msa0796730:CDS |
GATTCATGACCAAGTGGAAC+AGG | 0.421059 | 5_3:-8714045 | None:intergenic |
TGTCTGATGTTGTTCCTGGA+TGG | 0.421831 | 5_3:+8708569 | Msa0796730:CDS |
CAACCAACTTCTTATGGAAA+AGG | 0.424587 | 5_3:-8708813 | None:intergenic |
TAAGAAGTTGGTTGAAGGTC+AGG | 0.424668 | 5_3:+8708822 | Msa0796730:CDS |
AATTGTAGCACAAACAATAA+AGG | 0.429279 | 5_3:-8709938 | None:intergenic |
GCTTCGTGTTGTTCGTTTGT+GGG | 0.433550 | 5_3:+8708612 | Msa0796730:CDS |
GTAAGGGAGTATATTAAGGA+TGG | 0.442022 | 5_3:+8709201 | Msa0796730:CDS |
AGGCACACCTTCATCAACTT+TGG | 0.450837 | 5_3:-8709441 | None:intergenic |
AACACTTTCAGATGGAACTT+TGG | 0.455446 | 5_3:+8713246 | Msa0796730:CDS |
GAGGCAATTAAGATGTTAGA+AGG | 0.462503 | 5_3:+8713991 | Msa0796730:CDS |
TGCTCTGTTTGGAGATTATG+TGG | 0.469122 | 5_3:+8709397 | Msa0796730:CDS |
TGCTTCGTGTTGTTCGTTTG+TGG | 0.471590 | 5_3:+8708611 | Msa0796730:CDS |
GATCAAGCAGTTAAAGATGA+AGG | 0.473333 | 5_3:+8713886 | Msa0796730:CDS |
ATGGAAAGGTTTGTACCTGT+TGG | 0.477891 | 5_3:+8713922 | Msa0796730:CDS |
TTCCATAAGAAGTTGGTTGA+AGG | 0.479941 | 5_3:+8708817 | Msa0796730:CDS |
ATTGCAGAATCGAAGGAAGT+TGG | 0.479983 | 5_3:+8709904 | Msa0796730:CDS |
GAGGCTGCTGAGTTTAAGAA+AGG | 0.483728 | 5_3:+8709670 | Msa0796730:CDS |
TTAATTGCCTCAGCAATAGT+AGG | 0.487086 | 5_3:-8713979 | None:intergenic |
TCAGCAGCCTCTGATATATC+CGG | 0.490881 | 5_3:-8709658 | None:intergenic |
TGACTGTAATATCAGAGGTA+AGG | 0.491446 | 5_3:+8709184 | Msa0796730:CDS |
CCAGATAGGCCTGTTCCACT+TGG | 0.492195 | 5_3:+8714036 | Msa0796730:CDS |
TGTGCTGGTTATGCATGTGC+TGG | 0.496773 | 5_3:+8709463 | Msa0796730:CDS |
TGCTTCAGCTAACTGATCAC+AGG | 0.499121 | 5_3:+8709244 | Msa0796730:CDS |
ATGATAGGTCAAGGTGGTGA+TGG | 0.500290 | 5_3:+8713208 | Msa0796730:CDS |
GCTCTATAATAATACAACTT+AGG | 0.501136 | 5_3:-8710769 | None:intergenic |
GACTGTAATATCAGAGGTAA+GGG | 0.502452 | 5_3:+8709185 | Msa0796730:CDS |
AACAAGGATGGACTATTATG+AGG | 0.522416 | 5_3:+8710851 | Msa0796730:CDS |
TCAATCGAATTGATCTGCCC+TGG | 0.524160 | 5_3:-8708655 | None:intergenic |
TTGTGCCGCTTATTGGTCTG+AGG | 0.527061 | 5_3:+8709830 | Msa0796730:CDS |
TGAAGGGCCGGAGAAAATCA+TGG | 0.527110 | 5_3:+8713903 | Msa0796730:CDS |
TAAGGGAGTATATTAAGGAT+GGG | 0.528142 | 5_3:+8709202 | Msa0796730:CDS |
CTCCAAGACCGATCCCATCC+AGG | 0.529156 | 5_3:-8708583 | None:intergenic |
TAGCTGAAGCAAAATCATCT+TGG | 0.529859 | 5_3:-8709232 | None:intergenic |
ACCAAAGTGAATGTTGTTGA+GGG | 0.531926 | 5_3:+8708934 | Msa0796730:CDS |
AAGAAATCTTCATCTAATGA+TGG | 0.532109 | 5_3:-8709859 | None:intergenic |
TGACGCAATATTCTCATCCA+AGG | 0.535656 | 5_3:+8710815 | Msa0796730:CDS |
TTATTTAGCAGAAGGGAAAG+TGG | 0.536388 | 5_3:-8714086 | None:intergenic |
TACCCGAATTATGATCAATC+CGG | 0.536460 | 5_3:+8709639 | Msa0796730:CDS |
ACCCTCAACAACATTCACTT+TGG | 0.536490 | 5_3:-8708935 | None:intergenic |
TAATCCAAACATGGGAAGCA+AGG | 0.537993 | 5_3:-8708959 | None:intergenic |
TGTGCCGCTTATTGGTCTGA+GGG | 0.538205 | 5_3:+8709831 | Msa0796730:CDS |
TGATGAAGGTGTGCCTGTGC+TGG | 0.540487 | 5_3:+8709448 | Msa0796730:CDS |
AACTTTGACTAATATAGTTG+AGG | 0.545314 | 5_3:+8708981 | Msa0796730:CDS |
CTGCAATAGACTTCTTTGGA+TGG | 0.545840 | 5_3:-8709888 | None:intergenic |
GATGGTGTTTGTTGATGAGA+AGG | 0.555183 | 5_3:+8708678 | Msa0796730:CDS |
ATATATCAGAGCTAGTGATA+AGG | 0.556095 | 5_3:+8713159 | Msa0796730:intron |
ATGTTGTTCCTGGATGGGAT+CGG | 0.556922 | 5_3:+8708575 | Msa0796730:CDS |
TGAGCACAAAGAATTCCAAC+AGG | 0.558576 | 5_3:-8713937 | None:intergenic |
AATTCTTTGTGCTCATGCAA+TGG | 0.562123 | 5_3:+8713945 | Msa0796730:CDS |
ATCAAGCAGTTAAAGATGAA+GGG | 0.564778 | 5_3:+8713887 | Msa0796730:CDS |
CTTGGACACTTGCAAAATCA+GGG | 0.566156 | 5_3:+8713848 | Msa0796730:CDS |
AGCAGTTAAAGATGAAGGGC+CGG | 0.566390 | 5_3:+8713891 | Msa0796730:CDS |
GACGCAATATTCTCATCCAA+GGG | 0.569225 | 5_3:+8710816 | Msa0796730:CDS |
GAAGTCTATTGCAGAATCGA+AGG | 0.574915 | 5_3:+8709897 | Msa0796730:CDS |
AGCACATGCATAACCAGCAC+AGG | 0.575846 | 5_3:-8709461 | None:intergenic |
CTCATGGCCAAAGTTGATGA+AGG | 0.579376 | 5_3:+8709434 | Msa0796730:CDS |
TACAAAGGAACACTTTCAGA+TGG | 0.580694 | 5_3:+8713238 | Msa0796730:CDS |
CAGAAGAATATGATAGGTCA+AGG | 0.582332 | 5_3:+8713199 | Msa0796730:CDS |
AGTCAAAGTTAATCCAAACA+TGG | 0.582773 | 5_3:-8708968 | None:intergenic |
TGCAGAATCGAAGGAAGTTG+GGG | 0.585550 | 5_3:+8709906 | Msa0796730:CDS |
ACACTAAAGCAAAACAAGGA+TGG | 0.586253 | 5_3:+8710839 | Msa0796730:CDS |
AGGCTGCTGAGTTTAAGAAA+GGG | 0.589468 | 5_3:+8709671 | Msa0796730:CDS |
GTCAAAGTTAATCCAAACAT+GGG | 0.593676 | 5_3:-8708967 | None:intergenic |
GCAGATCAATTCGATTGAGA+TGG | 0.600971 | 5_3:+8708660 | Msa0796730:CDS |
AATCCAAACATGGGAAGCAA+GGG | 0.605138 | 5_3:-8708958 | None:intergenic |
GACCAAAGTGAATGTTGTTG+AGG | 0.607842 | 5_3:+8708933 | Msa0796730:CDS |
CTTAATGACTGTAATATCAG+AGG | 0.609914 | 5_3:+8709179 | Msa0796730:CDS |
CAGACCAATAAGCGGCACAA+TGG | 0.611297 | 5_3:-8709827 | None:intergenic |
AGAAAAGATTCATGACCAAG+TGG | 0.631994 | 5_3:-8714051 | None:intergenic |
GGCCGGAGAAAATCATGGAA+AGG | 0.635581 | 5_3:+8713908 | Msa0796730:CDS |
TCGTGTTGTTCGTTTGTGGG+AGG | 0.638386 | 5_3:+8708615 | Msa0796730:CDS |
GGATCACTTGAAACAACTCA+TGG | 0.640985 | 5_3:+8709418 | Msa0796730:CDS |
ATTAAGGCCTACTATTGCTG+AGG | 0.647873 | 5_3:+8713972 | Msa0796730:CDS |
GATCAATCCGGATATATCAG+AGG | 0.662308 | 5_3:+8709651 | Msa0796730:CDS |
GTGCCGCTTATTGGTCTGAG+GGG | 0.675059 | 5_3:+8709832 | Msa0796730:CDS |
CTACCCCTCAGACCAATAAG+CGG | 0.689725 | 5_3:-8709835 | None:intergenic |
AAGAATATGATAGGTCAAGG+TGG | 0.696121 | 5_3:+8713202 | Msa0796730:CDS |
AGGGACACTAAAGCAAAACA+AGG | 0.696719 | 5_3:+8710835 | Msa0796730:CDS |
GGTGATGGTGTTGTGTACAA+AGG | 0.702812 | 5_3:+8713223 | Msa0796730:CDS |
TGAGGTTAACCATCAAACTG+TGG | 0.718845 | 5_3:+8708999 | Msa0796730:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTTGAAAAAGTTATATAAA+TGG | + | chr5_3:8712273-8712292 | Msa0796730:intron | 10.0% |
!! | TAAATTTGTAAAAATATACA+GGG | - | chr5_3:8712507-8712526 | None:intergenic | 10.0% |
!! | ATAAATTTGTAAAAATATAC+AGG | - | chr5_3:8712508-8712527 | None:intergenic | 10.0% |
!! | AAAAAACAACTTATAAGTAT+GGG | - | chr5_3:8708905-8708924 | None:intergenic | 15.0% |
!! | AATTAATGAACAATAACAAA+GGG | - | chr5_3:8709104-8709123 | None:intergenic | 15.0% |
!! | AAATTAATGAACAATAACAA+AGG | - | chr5_3:8709105-8709124 | None:intergenic | 15.0% |
!! | ATAATTAAGATGAAACTAAT+TGG | - | chr5_3:8710477-8710496 | None:intergenic | 15.0% |
!!! | TAATTATTATCATGTTTTCT+TGG | + | chr5_3:8710490-8710509 | Msa0796730:intron | 15.0% |
!! | TATATGGAAACAAATAATAA+TGG | + | chr5_3:8710694-8710713 | Msa0796730:intron | 15.0% |
!! | AGAAAGAAGAATAAAATTTA+AGG | - | chr5_3:8711848-8711867 | None:intergenic | 15.0% |
!!! | TAACTTTTTCAAATTATCAT+CGG | - | chr5_3:8712267-8712286 | None:intergenic | 15.0% |
!!! | AAAAATTTGAAACTTGTTTT+TGG | + | chr5_3:8712978-8712997 | Msa0796730:intron | 15.0% |
!!! | AAAATTTGAAACTTGTTTTT+GGG | + | chr5_3:8712979-8712998 | Msa0796730:intron | 15.0% |
!!! | AGTGAAAATCATTTTTTATT+TGG | + | chr5_3:8713273-8713292 | Msa0796730:CDS | 15.0% |
!! | TTAATATTACGATGAAAAAT+CGG | - | chr5_3:8713600-8713619 | None:intergenic | 15.0% |
!! | GAAAAAACAACTTATAAGTA+TGG | - | chr5_3:8708906-8708925 | None:intergenic | 20.0% |
!! | ATAAGGAAAATAAGCAAATT+AGG | - | chr5_3:8709077-8709096 | None:intergenic | 20.0% |
!! | AAACTATTAAGAAAAGAAAG+AGG | - | chr5_3:8709138-8709157 | None:intergenic | 20.0% |
!!! | ATCTTCATTTTGTTTATAGA+AGG | + | chr5_3:8709301-8709320 | Msa0796730:intron | 20.0% |
!!! | TCTTCATTTTGTTTATAGAA+GGG | + | chr5_3:8709302-8709321 | Msa0796730:intron | 20.0% |
!!! | AAAGGGTTAGTTATTTTATT+TGG | + | chr5_3:8709688-8709707 | Msa0796730:intron | 20.0% |
!!! | TTATTTTATTTGGATTGTTG+TGG | + | chr5_3:8709698-8709717 | Msa0796730:intron | 20.0% |
!! | AGAAAAAATTATCATTGTCA+TGG | + | chr5_3:8710007-8710026 | Msa0796730:intron | 20.0% |
!!! | TATTTTAAACTTTAGTCCTT+TGG | + | chr5_3:8710043-8710062 | Msa0796730:intron | 20.0% |
!! | ATAATATTGTAAGAAAGTTC+AGG | + | chr5_3:8710311-8710330 | Msa0796730:intron | 20.0% |
!! | AAGGAAAAATGATCAAATTA+AGG | - | chr5_3:8710611-8710630 | None:intergenic | 20.0% |
!!! | TAATTTGATCATTTTTCCTT+TGG | + | chr5_3:8710611-8710630 | Msa0796730:intron | 20.0% |
!! | TTGTAAAAAAATTGTTCCAA+AGG | - | chr5_3:8710630-8710649 | None:intergenic | 20.0% |
!!! | TATCTCTTTTGATAAAAACA+TGG | - | chr5_3:8711294-8711313 | None:intergenic | 20.0% |
!!! | TAATTAGTCATAGTACTTTT+TGG | - | chr5_3:8711815-8711834 | None:intergenic | 20.0% |
!!! | GTTTTTCTAAATAATGACTT+CGG | - | chr5_3:8712017-8712036 | None:intergenic | 20.0% |
!! | TTCTCAATTATATATGCTAT+TGG | + | chr5_3:8712864-8712883 | Msa0796730:intron | 20.0% |
!! | TCATAATTATGTATAGGAAA+TGG | + | chr5_3:8713042-8713061 | Msa0796730:intron | 20.0% |
!! | CATAATTATGTATAGGAAAT+GGG | + | chr5_3:8713043-8713062 | Msa0796730:intron | 20.0% |
!!! | ATTTTTTATTTGGATACTAG+AGG | + | chr5_3:8713283-8713302 | Msa0796730:CDS | 20.0% |
!!! | TTTTTTATTTGGATACTAGA+GGG | + | chr5_3:8713284-8713303 | Msa0796730:CDS | 20.0% |
!!! | ATAAATATTCTTGCTTTAAG+AGG | + | chr5_3:8713355-8713374 | Msa0796730:CDS | 20.0% |
!! | AGTTATCAATTATCAGTTAA+TGG | + | chr5_3:8713486-8713505 | Msa0796730:intron | 20.0% |
!!! | GATTTTTCATCGTAATATTA+AGG | + | chr5_3:8713599-8713618 | Msa0796730:intron | 20.0% |
!! | TTTTAGATGAACAGACAAAA+AGG | - | chr5_3:8708750-8708769 | None:intergenic | 25.0% |
!! | TTTTGTCTGTTCATCTAAAA+AGG | + | chr5_3:8708750-8708769 | Msa0796730:intron | 25.0% |
! | TTTGTCTGTTCATCTAAAAA+GGG | + | chr5_3:8708751-8708770 | Msa0796730:intron | 25.0% |
!!! | ATAAGTTGTTTTTTCAGATG+AGG | + | chr5_3:8708911-8708930 | Msa0796730:CDS | 25.0% |
! | AACTTTGACTAATATAGTTG+AGG | + | chr5_3:8708981-8709000 | Msa0796730:CDS | 25.0% |
!!! | ATTCTTATCAGTTTTGTCAT+TGG | + | chr5_3:8709571-8709590 | Msa0796730:intron | 25.0% |
!! | AGTATTCATTACATTTTGCA+GGG | - | chr5_3:8709620-8709639 | None:intergenic | 25.0% |
!! | TAGTATTCATTACATTTTGC+AGG | - | chr5_3:8709621-8709640 | None:intergenic | 25.0% |
! | TTAACATCCAAACTGATATT+GGG | - | chr5_3:8709790-8709809 | None:intergenic | 25.0% |
! | ATTAACATCCAAACTGATAT+TGG | - | chr5_3:8709791-8709810 | None:intergenic | 25.0% |
! | AGTTTGGATGTTAATTCAAT+TGG | + | chr5_3:8709796-8709815 | Msa0796730:intron | 25.0% |
! | AAGAAATCTTCATCTAATGA+TGG | - | chr5_3:8709862-8709881 | None:intergenic | 25.0% |
! | AATTGTAGCACAAACAATAA+AGG | - | chr5_3:8709941-8709960 | None:intergenic | 25.0% |
! | AAAAATTATCATTGTCATGG+TGG | + | chr5_3:8710010-8710029 | Msa0796730:intron | 25.0% |
! | AATCAAATCTCAACTTCTAT+AGG | + | chr5_3:8710370-8710389 | Msa0796730:intron | 25.0% |
! | GCTCTATAATAATACAACTT+AGG | - | chr5_3:8710772-8710791 | None:intergenic | 25.0% |
! | TGCTATATCCAATGAAATAT+GGG | + | chr5_3:8710897-8710916 | Msa0796730:intron | 25.0% |
! | CTTAACAATGAATAACCATA+AGG | - | chr5_3:8710987-8711006 | None:intergenic | 25.0% |
! | ACATGAATGTATACAAGATA+AGG | - | chr5_3:8711095-8711114 | None:intergenic | 25.0% |
! | GATTATGCATCTTAGTAATA+TGG | - | chr5_3:8711172-8711191 | None:intergenic | 25.0% |
! | AAGATGCATAATCAAAATTC+AGG | + | chr5_3:8711179-8711198 | Msa0796730:intron | 25.0% |
! | AATTGATTAGTAATGCGAAT+TGG | - | chr5_3:8711220-8711239 | None:intergenic | 25.0% |
!! | TCCATAACAAAGATTTTACA+AGG | + | chr5_3:8711243-8711262 | Msa0796730:intron | 25.0% |
!! | CCATAACAAAGATTTTACAA+GGG | + | chr5_3:8711244-8711263 | Msa0796730:intron | 25.0% |
!! | GTTATTGTATTGTGTACTTT+TGG | - | chr5_3:8711524-8711543 | None:intergenic | 25.0% |
! | TTCACATTATACAAAGAACT+AGG | + | chr5_3:8711571-8711590 | Msa0796730:intron | 25.0% |
! | TCGTTGTAGTATCTATAATT+TGG | - | chr5_3:8711615-8711634 | None:intergenic | 25.0% |
!!! | ACTTTTTGGTTATCAAAGTT+CGG | - | chr5_3:8711801-8711820 | None:intergenic | 25.0% |
!!! | GTTTTTGTTATGAACTTACT+CGG | + | chr5_3:8712130-8712149 | Msa0796730:intron | 25.0% |
!!! | TTTTTGTTATGAACTTACTC+GGG | + | chr5_3:8712131-8712150 | Msa0796730:intron | 25.0% |
! | AACTTATGCTCATCAATTTA+GGG | - | chr5_3:8712389-8712408 | None:intergenic | 25.0% |
! | AAACTTATGCTCATCAATTT+AGG | - | chr5_3:8712390-8712409 | None:intergenic | 25.0% |
!!! | AACACTTGGTTGAATTTTTT+TGG | - | chr5_3:8712839-8712858 | None:intergenic | 25.0% |
! | AATTGAGAAGTAAAAACACT+TGG | - | chr5_3:8712853-8712872 | None:intergenic | 25.0% |
!!! | ATTGGTGTTGTGAATAAATT+TGG | + | chr5_3:8712882-8712901 | Msa0796730:intron | 25.0% |
!!! | AAACTTGTTTTTGGGTTATT+AGG | + | chr5_3:8712987-8713006 | Msa0796730:intron | 25.0% |
! | TTGTGCTCATAATTATGTAT+AGG | + | chr5_3:8713036-8713055 | Msa0796730:intron | 25.0% |
!! | TTTTCACAGAAGAATATGAT+AGG | + | chr5_3:8713193-8713212 | Msa0796730:CDS | 25.0% |
!!! | TTTTTATTTGGATACTAGAG+GGG | + | chr5_3:8713285-8713304 | Msa0796730:CDS | 25.0% |
! | TTATCCAAATCTTCTTGATA+AGG | + | chr5_3:8713449-8713468 | Msa0796730:intron | 25.0% |
!! | AAAGTGAAAGTTGCTAATTT+TGG | + | chr5_3:8713651-8713670 | Msa0796730:intron | 25.0% |
! | CTAAGAAAAGTGATGTTTAT+AGG | + | chr5_3:8713740-8713759 | Msa0796730:intron | 25.0% |
! | AAAAGTGATGTTTATAGGTT+TGG | + | chr5_3:8713745-8713764 | Msa0796730:intron | 25.0% |
! | ATATTCCTAATTTACCAGAT+AGG | + | chr5_3:8714022-8714041 | Msa0796730:CDS | 25.0% |
!! | GGTTTGTATTGCTATTTATC+TGG | + | chr5_3:8708699-8708718 | Msa0796730:intron | 30.0% |
GTCAAAGTTAATCCAAACAT+GGG | - | chr5_3:8708970-8708989 | None:intergenic | 30.0% | |
AGTCAAAGTTAATCCAAACA+TGG | - | chr5_3:8708971-8708990 | None:intergenic | 30.0% | |
GTGGACAACAATTATTTGAT+TGG | + | chr5_3:8709018-8709037 | Msa0796730:CDS | 30.0% | |
!!! | TTTTGCTGTTTAGATGACAT+TGG | + | chr5_3:8709156-8709175 | Msa0796730:CDS | 30.0% |
CTTAATGACTGTAATATCAG+AGG | + | chr5_3:8709179-8709198 | Msa0796730:CDS | 30.0% | |
! | TAAGGGAGTATATTAAGGAT+GGG | + | chr5_3:8709202-8709221 | Msa0796730:CDS | 30.0% |
!!! | GGTTGATATCTTATTTTACG+AGG | + | chr5_3:8709265-8709284 | Msa0796730:intron | 30.0% |
CCAAACAAAAGTTTAAACGA+TGG | - | chr5_3:8709329-8709348 | None:intergenic | 30.0% | |
! | CCATCGTTTAAACTTTTGTT+TGG | + | chr5_3:8709326-8709345 | Msa0796730:intron | 30.0% |
!!! | TGTTTGGTTTTTTTCACAAG+TGG | + | chr5_3:8709342-8709361 | Msa0796730:intron | 30.0% |
!!! | GTTTGGTTTTTTTCACAAGT+GGG | + | chr5_3:8709343-8709362 | Msa0796730:intron | 30.0% |
! | GCAAAAGTGAAGATTTTCAA+AGG | + | chr5_3:8709497-8709516 | Msa0796730:CDS | 30.0% |
! | GATTTTCAAAGGTCTGTTTT+TGG | + | chr5_3:8709508-8709527 | Msa0796730:intron | 30.0% |
TATCCGGATTGATCATAATT+CGG | - | chr5_3:8709645-8709664 | None:intergenic | 30.0% | |
TAACATCCAAACTGATATTG+GGG | - | chr5_3:8709789-8709808 | None:intergenic | 30.0% | |
ATTGTTTGTGCTACAATTGA+TGG | + | chr5_3:8709943-8709962 | Msa0796730:CDS | 30.0% | |
! | TTTTACATGTTAACCCACTT+GGG | + | chr5_3:8710104-8710123 | Msa0796730:intron | 30.0% |
! | GGGTTTGTAACTAGTTTATA+TGG | + | chr5_3:8710678-8710697 | Msa0796730:intron | 30.0% |
AGAGCAACACTTGATTATTA+TGG | + | chr5_3:8710787-8710806 | Msa0796730:CDS | 30.0% | |
CTGCTATATCCAATGAAATA+TGG | + | chr5_3:8710896-8710915 | Msa0796730:intron | 30.0% | |
CTATAATAGCTATTGTTCCA+TGG | + | chr5_3:8710935-8710954 | Msa0796730:intron | 30.0% | |
GTTCATTGTCTTCTTATACT+TGG | + | chr5_3:8711045-8711064 | Msa0796730:intron | 30.0% | |
CCCTTGTAAAATCTTTGTTA+TGG | - | chr5_3:8711247-8711266 | None:intergenic | 30.0% | |
! | AAGATTTTACAAGGGAAATC+AGG | + | chr5_3:8711252-8711271 | Msa0796730:intron | 30.0% |
! | CTCTTTTGATAAAAACATGG+AGG | - | chr5_3:8711291-8711310 | None:intergenic | 30.0% |
GAAGTCGTAAATAAAGATGA+AGG | - | chr5_3:8711359-8711378 | None:intergenic | 30.0% | |
! | AAAAGTCTTATCCAACTAAG+TGG | + | chr5_3:8711634-8711653 | Msa0796730:intron | 30.0% |
TTTAGATTACTCCACTTAGT+TGG | - | chr5_3:8711648-8711667 | None:intergenic | 30.0% | |
TACAGATGCTAATCTAAACT+AGG | - | chr5_3:8711875-8711894 | None:intergenic | 30.0% | |
TATGAACCTCATAAAAGCTT+TGG | + | chr5_3:8711926-8711945 | Msa0796730:intron | 30.0% | |
! | AAAGAACCAAAGCTTTTATG+AGG | - | chr5_3:8711935-8711954 | None:intergenic | 30.0% |
TTCATGTATTGTAGATCTGT+AGG | - | chr5_3:8711962-8711981 | None:intergenic | 30.0% | |
TAAATAATGACTTCGGTCAT+AGG | - | chr5_3:8712010-8712029 | None:intergenic | 30.0% | |
ATATCCAAATTAGTGCACAT+AGG | - | chr5_3:8712069-8712088 | None:intergenic | 30.0% | |
TAGAGTCAATGAAAATCTCA+TGG | - | chr5_3:8712550-8712569 | None:intergenic | 30.0% | |
AAACAAGTAGGAACTAATGA+AGG | - | chr5_3:8712625-8712644 | None:intergenic | 30.0% | |
! | TGACAAATTGTGTTGAGTTT+TGG | - | chr5_3:8712648-8712667 | None:intergenic | 30.0% |
ACAGAATGGAAACAAAAAGT+TGG | + | chr5_3:8712703-8712722 | Msa0796730:intron | 30.0% | |
ACAAAAGGGTCATCAAATAA+TGG | + | chr5_3:8712954-8712973 | Msa0796730:intron | 30.0% | |
ATATATCAGAGCTAGTGATA+AGG | + | chr5_3:8713159-8713178 | Msa0796730:intron | 30.0% | |
ATAGTGTAAAACGTAAGAGA+AGG | + | chr5_3:8713395-8713414 | Msa0796730:intron | 30.0% | |
!! | TTAGCCTTATCAAGAAGATT+TGG | - | chr5_3:8713456-8713475 | None:intergenic | 30.0% |
AATCTTCTTGATAAGGCTAA+TGG | + | chr5_3:8713456-8713475 | Msa0796730:intron | 30.0% | |
! | TATCAGTTAATGGTGCTAAT+AGG | + | chr5_3:8713496-8713515 | Msa0796730:intron | 30.0% |
ATTATACTTGATGTGGCTAA+AGG | + | chr5_3:8713543-8713562 | Msa0796730:intron | 30.0% | |
TTATACTTGATGTGGCTAAA+GGG | + | chr5_3:8713544-8713563 | Msa0796730:intron | 30.0% | |
! | TAAGGCGACAATTATACTTT+TGG | + | chr5_3:8713617-8713636 | Msa0796730:intron | 30.0% |
!!! | GAAAGTTGCTAATTTTGGTT+TGG | + | chr5_3:8713656-8713675 | Msa0796730:intron | 30.0% |
!!! | AATTTTGGTTTGGCAAAACA+AGG | + | chr5_3:8713666-8713685 | Msa0796730:intron | 30.0% |
ATCAAGCAGTTAAAGATGAA+GGG | + | chr5_3:8713887-8713906 | Msa0796730:CDS | 30.0% | |
! | TGCCAAATTTTCTTCATCCA+GGG | + | chr5_3:8708638-8708657 | Msa0796730:CDS | 35.0% |
! | GTACCTTTTCCATAAGAAGT+TGG | + | chr5_3:8708810-8708829 | Msa0796730:CDS | 35.0% |
CAACCAACTTCTTATGGAAA+AGG | - | chr5_3:8708816-8708835 | None:intergenic | 35.0% | |
! | TTCCATAAGAAGTTGGTTGA+AGG | + | chr5_3:8708817-8708836 | Msa0796730:CDS | 35.0% |
ACCAAAGTGAATGTTGTTGA+GGG | + | chr5_3:8708934-8708953 | Msa0796730:CDS | 35.0% | |
AATTGTTGTCCACAGTTTGA+TGG | - | chr5_3:8709011-8709030 | None:intergenic | 35.0% | |
! | CAATAACAAAGGGAAGCATA+AGG | - | chr5_3:8709094-8709113 | None:intergenic | 35.0% |
TGACTGTAATATCAGAGGTA+AGG | + | chr5_3:8709184-8709203 | Msa0796730:CDS | 35.0% | |
GACTGTAATATCAGAGGTAA+GGG | + | chr5_3:8709185-8709204 | Msa0796730:CDS | 35.0% | |
! | AGAGGTAAGGGAGTATATTA+AGG | + | chr5_3:8709197-8709216 | Msa0796730:CDS | 35.0% |
! | GTAAGGGAGTATATTAAGGA+TGG | + | chr5_3:8709201-8709220 | Msa0796730:CDS | 35.0% |
TAGCTGAAGCAAAATCATCT+TGG | - | chr5_3:8709235-8709254 | None:intergenic | 35.0% | |
! | TGGGAAATGTTTTTCACAAG+TGG | + | chr5_3:8709362-8709381 | Msa0796730:intron | 35.0% |
! | GGGAAATGTTTTTCACAAGT+GGG | + | chr5_3:8709363-8709382 | Msa0796730:intron | 35.0% |
TACCCGAATTATGATCAATC+CGG | + | chr5_3:8709639-8709658 | Msa0796730:CDS | 35.0% | |
ATCCGGATTGATCATAATTC+GGG | - | chr5_3:8709644-8709663 | None:intergenic | 35.0% | |
GATTCTGCAATAGACTTCTT+TGG | - | chr5_3:8709895-8709914 | None:intergenic | 35.0% | |
! | TACAATTGATGGTATTGCTG+AGG | + | chr5_3:8709954-8709973 | Msa0796730:intron | 35.0% |
! | ACAATTGATGGTATTGCTGA+GGG | + | chr5_3:8709955-8709974 | Msa0796730:intron | 35.0% |
! | GTTTTACATGTTAACCCACT+TGG | + | chr5_3:8710103-8710122 | Msa0796730:intron | 35.0% |
AACTAATTGGAACCAATGCA+GGG | - | chr5_3:8710464-8710483 | None:intergenic | 35.0% | |
AAACTAATTGGAACCAATGC+AGG | - | chr5_3:8710465-8710484 | None:intergenic | 35.0% | |
AAGTCTTGATTCACGAAAAG+AGG | - | chr5_3:8710535-8710554 | None:intergenic | 35.0% | |
TACTACTAGAATCAAACCTC+AGG | + | chr5_3:8710717-8710736 | Msa0796730:intron | 35.0% | |
ACTACTAGAATCAAACCTCA+GGG | + | chr5_3:8710718-8710737 | Msa0796730:intron | 35.0% | |
ACACTAAAGCAAAACAAGGA+TGG | + | chr5_3:8710839-8710858 | Msa0796730:CDS | 35.0% | |
!! | AACAAGGATGGACTATTATG+AGG | + | chr5_3:8710851-8710870 | Msa0796730:CDS | 35.0% |
ATCCAATGAAATATGGGTAG+TGG | + | chr5_3:8710903-8710922 | Msa0796730:intron | 35.0% | |
TTCCACTACCCATATTTCAT+TGG | - | chr5_3:8710908-8710927 | None:intergenic | 35.0% | |
TGTTCTTCTCCATTACAAAC+AGG | + | chr5_3:8711007-8711026 | Msa0796730:intron | 35.0% | |
AAGACAATGAACTGCAATCA+TGG | - | chr5_3:8711037-8711056 | None:intergenic | 35.0% | |
CTAACTAATGACCTACTTCA+TGG | + | chr5_3:8711121-8711140 | Msa0796730:intron | 35.0% | |
TCGTAAATAAAGATGAAGGC+CGG | - | chr5_3:8711355-8711374 | None:intergenic | 35.0% | |
GTAGTGAAGAAGTTTCTGAA+GGG | - | chr5_3:8711412-8711431 | None:intergenic | 35.0% | |
AGTAGTGAAGAAGTTTCTGA+AGG | - | chr5_3:8711413-8711432 | None:intergenic | 35.0% | |
CTATAATTTGGCTACAGTGA+AGG | - | chr5_3:8711603-8711622 | None:intergenic | 35.0% | |
! | GTACTTTTCCTTACAGAATC+TGG | - | chr5_3:8711722-8711741 | None:intergenic | 35.0% |
GTTGTAACTCATGAAACACA+AGG | - | chr5_3:8712183-8712202 | None:intergenic | 35.0% | |
TGGAATGTAATCACATGTGT+CGG | + | chr5_3:8712293-8712312 | Msa0796730:intron | 35.0% | |
!! | TAATTCTGAGACTTTAGCAG+TGG | - | chr5_3:8712590-8712609 | None:intergenic | 35.0% |
!!! | GTTGAGTTTTGGAAACAAGT+AGG | - | chr5_3:8712637-8712656 | None:intergenic | 35.0% |
GTATCACAAACATCACAGAA+TGG | + | chr5_3:8712689-8712708 | Msa0796730:intron | 35.0% | |
!! | TTGAGTTCTGAAACTAGATG+TGG | + | chr5_3:8712761-8712780 | Msa0796730:intron | 35.0% |
!! | GTATGCCACTTTCAACAAAA+GGG | + | chr5_3:8712940-8712959 | Msa0796730:intron | 35.0% |
ATAGGAAATGGGATAAGATG+AGG | + | chr5_3:8713054-8713073 | Msa0796730:intron | 35.0% | |
! | AACCATTTAGCTCCTGTATT+AGG | - | chr5_3:8713137-8713156 | None:intergenic | 35.0% |
CAGAAGAATATGATAGGTCA+AGG | + | chr5_3:8713199-8713218 | Msa0796730:CDS | 35.0% | |
AAGAATATGATAGGTCAAGG+TGG | + | chr5_3:8713202-8713221 | Msa0796730:CDS | 35.0% | |
TACAAAGGAACACTTTCAGA+TGG | + | chr5_3:8713238-8713257 | Msa0796730:CDS | 35.0% | |
AACACTTTCAGATGGAACTT+TGG | + | chr5_3:8713246-8713265 | Msa0796730:CDS | 35.0% | |
TTGGCAAAACAAGGTAATGA+AGG | + | chr5_3:8713675-8713694 | Msa0796730:intron | 35.0% | |
TGTCCATATAAAGCATACTC+AGG | - | chr5_3:8713715-8713734 | None:intergenic | 35.0% | |
GTGATACTTGAGATAATGAG+TGG | + | chr5_3:8713772-8713791 | Msa0796730:intron | 35.0% | |
!!! | CAGTTGTTTTGATCACTGAT+CGG | + | chr5_3:8713824-8713843 | Msa0796730:intron | 35.0% |
!!! | AGTTGTTTTGATCACTGATC+GGG | + | chr5_3:8713825-8713844 | Msa0796730:intron | 35.0% |
GATCAAGCAGTTAAAGATGA+AGG | + | chr5_3:8713886-8713905 | Msa0796730:CDS | 35.0% | |
! | AACCTTTCCATGATTTTCTC+CGG | - | chr5_3:8713913-8713932 | None:intergenic | 35.0% |
AATTCTTTGTGCTCATGCAA+TGG | + | chr5_3:8713945-8713964 | Msa0796730:CDS | 35.0% | |
TTAATTGCCTCAGCAATAGT+AGG | - | chr5_3:8713982-8714001 | None:intergenic | 35.0% | |
GAGGCAATTAAGATGTTAGA+AGG | + | chr5_3:8713991-8714010 | Msa0796730:CDS | 35.0% | |
AGAAAAGATTCATGACCAAG+TGG | - | chr5_3:8714054-8714073 | None:intergenic | 35.0% | |
! | GTGCCAAATTTTCTTCATCC+AGG | + | chr5_3:8708637-8708656 | Msa0796730:CDS | 40.0% |
TGCCCTGGATGAAGAAAATT+TGG | - | chr5_3:8708643-8708662 | None:intergenic | 40.0% | |
GCAGATCAATTCGATTGAGA+TGG | + | chr5_3:8708660-8708679 | Msa0796730:CDS | 40.0% | |
! | GATGGTGTTTGTTGATGAGA+AGG | + | chr5_3:8708678-8708697 | Msa0796730:CDS | 40.0% |
GACCTTCAACCAACTTCTTA+TGG | - | chr5_3:8708822-8708841 | None:intergenic | 40.0% | |
! | TAAGAAGTTGGTTGAAGGTC+AGG | + | chr5_3:8708822-8708841 | Msa0796730:CDS | 40.0% |
CTCTTAGCAGTTGTTCTTAC+AGG | + | chr5_3:8708872-8708891 | Msa0796730:CDS | 40.0% | |
GACCAAAGTGAATGTTGTTG+AGG | + | chr5_3:8708933-8708952 | Msa0796730:CDS | 40.0% | |
ACCCTCAACAACATTCACTT+TGG | - | chr5_3:8708938-8708957 | None:intergenic | 40.0% | |
AATCCAAACATGGGAAGCAA+GGG | - | chr5_3:8708961-8708980 | None:intergenic | 40.0% | |
TAATCCAAACATGGGAAGCA+AGG | - | chr5_3:8708962-8708981 | None:intergenic | 40.0% | |
TGAGGTTAACCATCAAACTG+TGG | + | chr5_3:8708999-8709018 | Msa0796730:CDS | 40.0% | |
AAATGTGAGACTGCTCTGTT+TGG | + | chr5_3:8709386-8709405 | Msa0796730:CDS | 40.0% | |
TGCTCTGTTTGGAGATTATG+TGG | + | chr5_3:8709397-8709416 | Msa0796730:CDS | 40.0% | |
GGATCACTTGAAACAACTCA+TGG | + | chr5_3:8709418-8709437 | Msa0796730:CDS | 40.0% | |
GATCAATCCGGATATATCAG+AGG | + | chr5_3:8709651-8709670 | Msa0796730:CDS | 40.0% | |
AGGCTGCTGAGTTTAAGAAA+GGG | + | chr5_3:8709671-8709690 | Msa0796730:CDS | 40.0% | |
TTTACGCCCCAATATCAGTT+TGG | + | chr5_3:8709780-8709799 | Msa0796730:intron | 40.0% | |
CTGCAATAGACTTCTTTGGA+TGG | - | chr5_3:8709891-8709910 | None:intergenic | 40.0% | |
GAAGTCTATTGCAGAATCGA+AGG | + | chr5_3:8709897-8709916 | Msa0796730:CDS | 40.0% | |
ATTGCAGAATCGAAGGAAGT+TGG | + | chr5_3:8709904-8709923 | Msa0796730:CDS | 40.0% | |
TTGCAGAATCGAAGGAAGTT+GGG | + | chr5_3:8709905-8709924 | Msa0796730:CDS | 40.0% | |
GATTAGTATCAGACGACCAA+AGG | - | chr5_3:8710062-8710081 | None:intergenic | 40.0% | |
ATTCTCCCTAGTGCCAATTT+AGG | + | chr5_3:8710188-8710207 | Msa0796730:intron | 40.0% | |
CTAAACTAGCCCACCTAAAT+TGG | - | chr5_3:8710204-8710223 | None:intergenic | 40.0% | |
TCAAACCTCAGGGTACAATA+TGG | + | chr5_3:8710728-8710747 | Msa0796730:intron | 40.0% | |
TCTTTCCATATTGTACCCTG+AGG | - | chr5_3:8710736-8710755 | None:intergenic | 40.0% | |
TGACGCAATATTCTCATCCA+AGG | + | chr5_3:8710815-8710834 | Msa0796730:CDS | 40.0% | |
GACGCAATATTCTCATCCAA+GGG | + | chr5_3:8710816-8710835 | Msa0796730:CDS | 40.0% | |
! | TGTTTTGCTTTAGTGTCCCT+TGG | - | chr5_3:8710835-8710854 | None:intergenic | 40.0% |
AGGGACACTAAAGCAAAACA+AGG | + | chr5_3:8710835-8710854 | Msa0796730:CDS | 40.0% | |
ATAGCAGTGCAGATGTTATC+AGG | - | chr5_3:8710883-8710902 | None:intergenic | 40.0% | |
!! | AATATGGGTAGTGGAACTTG+TGG | + | chr5_3:8710912-8710931 | Msa0796730:intron | 40.0% |
CCATAAGGACATTTACAAGC+AGG | - | chr5_3:8710972-8710991 | None:intergenic | 40.0% | |
CCTGCTTGTAAATGTCCTTA+TGG | + | chr5_3:8710969-8710988 | Msa0796730:intron | 40.0% | |
CATGGAAGTCCTGTTTGTAA+TGG | - | chr5_3:8711019-8711038 | None:intergenic | 40.0% | |
TTGTGTTGAACACGAACTTC+CGG | + | chr5_3:8711314-8711333 | Msa0796730:intron | 40.0% | |
! | TTCTGAAGGGAATAAGTGTG+TGG | - | chr5_3:8711399-8711418 | None:intergenic | 40.0% |
GGTTCTCAAGCTACATGTAT+GGG | - | chr5_3:8711466-8711485 | None:intergenic | 40.0% | |
TGGTTCTCAAGCTACATGTA+TGG | - | chr5_3:8711467-8711486 | None:intergenic | 40.0% | |
GAGAACCAGTTTCTGATATC+TGG | + | chr5_3:8711479-8711498 | Msa0796730:intron | 40.0% | |
AACCAGTTTCTGATATCTGG+AGG | + | chr5_3:8711482-8711501 | Msa0796730:intron | 40.0% | |
!! | TCTGGAGGCTCTGAATTTAA+TGG | + | chr5_3:8711497-8711516 | Msa0796730:intron | 40.0% |
!! | CTGGAGGCTCTGAATTTAAT+GGG | + | chr5_3:8711498-8711517 | Msa0796730:intron | 40.0% |
GCAAGAATCCAGATTCTGTA+AGG | + | chr5_3:8711711-8711730 | Msa0796730:intron | 40.0% | |
ACCTCCTATGTGCACTAATT+TGG | + | chr5_3:8712062-8712081 | Msa0796730:intron | 40.0% | |
TCCAAATTAGTGCACATAGG+AGG | - | chr5_3:8712066-8712085 | None:intergenic | 40.0% | |
TGAAACACAAGGTGCATGAA+GGG | - | chr5_3:8712172-8712191 | None:intergenic | 40.0% | |
ATGAAACACAAGGTGCATGA+AGG | - | chr5_3:8712173-8712192 | None:intergenic | 40.0% | |
!! | TGACTTGTTAGTGTCTTGTC+CGG | - | chr5_3:8712242-8712261 | None:intergenic | 40.0% |
!! | GAGAGCTTTTGATTAGACTG+TGG | + | chr5_3:8712352-8712371 | Msa0796730:intron | 40.0% |
! | ACAAACTCATCAAGTTGTGC+AGG | + | chr5_3:8712667-8712686 | Msa0796730:intron | 40.0% |
GTCCTTTAGACTGCTTGTAA+TGG | + | chr5_3:8712734-8712753 | Msa0796730:intron | 40.0% | |
CACCATTACAAGCAGTCTAA+AGG | - | chr5_3:8712739-8712758 | None:intergenic | 40.0% | |
AGTATACAACCAGCTGTCTT+AGG | - | chr5_3:8712918-8712937 | None:intergenic | 40.0% | |
AAGACAGCTGGTTGTATACT+TGG | + | chr5_3:8712918-8712937 | Msa0796730:intron | 40.0% | |
!! | GGTATGCCACTTTCAACAAA+AGG | + | chr5_3:8712939-8712958 | Msa0796730:intron | 40.0% |
! | GATGACCCTTTTGTTGAAAG+TGG | - | chr5_3:8712948-8712967 | None:intergenic | 40.0% |
GAAATGGGATAAGATGAGGA+GGG | + | chr5_3:8713058-8713077 | Msa0796730:intron | 40.0% | |
! | GACAGTGTTTTGCCTAATAC+AGG | + | chr5_3:8713122-8713141 | Msa0796730:intron | 40.0% |
TGCCTAATACAGGAGCTAAA+TGG | + | chr5_3:8713132-8713151 | Msa0796730:intron | 40.0% | |
! | ATGGTGCTAATAGGCTAACT+TGG | + | chr5_3:8713505-8713524 | Msa0796730:intron | 40.0% |
GCACCTGAGTATGCTTTATA+TGG | + | chr5_3:8713709-8713728 | Msa0796730:intron | 40.0% | |
CGATCAGTGATCAAAACAAC+TGG | - | chr5_3:8713826-8713845 | None:intergenic | 40.0% | |
CTTGGACACTTGCAAAATCA+GGG | + | chr5_3:8713848-8713867 | Msa0796730:CDS | 40.0% | |
ATGGAAAGGTTTGTACCTGT+TGG | + | chr5_3:8713922-8713941 | Msa0796730:CDS | 40.0% | |
TGAGCACAAAGAATTCCAAC+AGG | - | chr5_3:8713940-8713959 | None:intergenic | 40.0% | |
CTCATGCAATGGTTGCATTA+AGG | + | chr5_3:8713956-8713975 | Msa0796730:CDS | 40.0% | |
ATTAAGGCCTACTATTGCTG+AGG | + | chr5_3:8713972-8713991 | Msa0796730:CDS | 40.0% | |
ACAGGCCTATCTGGTAAATT+AGG | - | chr5_3:8714030-8714049 | None:intergenic | 40.0% | |
TTGCTGTCTGATGTTGTTCC+TGG | + | chr5_3:8708565-8708584 | Msa0796730:CDS | 45.0% | |
TGTCTGATGTTGTTCCTGGA+TGG | + | chr5_3:8708569-8708588 | Msa0796730:CDS | 45.0% | |
GTCTGATGTTGTTCCTGGAT+GGG | + | chr5_3:8708570-8708589 | Msa0796730:CDS | 45.0% | |
ATGTTGTTCCTGGATGGGAT+CGG | + | chr5_3:8708575-8708594 | Msa0796730:CDS | 45.0% | |
! | TGCTTCGTGTTGTTCGTTTG+TGG | + | chr5_3:8708611-8708630 | Msa0796730:CDS | 45.0% |
! | GCTTCGTGTTGTTCGTTTGT+GGG | + | chr5_3:8708612-8708631 | Msa0796730:CDS | 45.0% |
TCAATCGAATTGATCTGCCC+TGG | - | chr5_3:8708658-8708677 | None:intergenic | 45.0% | |
TGCTTCAGCTAACTGATCAC+AGG | + | chr5_3:8709244-8709263 | Msa0796730:CDS | 45.0% | |
!! | CTCATGGCCAAAGTTGATGA+AGG | + | chr5_3:8709434-8709453 | Msa0796730:CDS | 45.0% |
AGGCACACCTTCATCAACTT+TGG | - | chr5_3:8709444-8709463 | None:intergenic | 45.0% | |
TCAGCAGCCTCTGATATATC+CGG | - | chr5_3:8709661-8709680 | None:intergenic | 45.0% | |
GAGGCTGCTGAGTTTAAGAA+AGG | + | chr5_3:8709670-8709689 | Msa0796730:CDS | 45.0% | |
TGCAGAATCGAAGGAAGTTG+GGG | + | chr5_3:8709906-8709925 | Msa0796730:CDS | 45.0% | |
GTATTGCTGAGGGACAGAAA+TGG | + | chr5_3:8709965-8709984 | Msa0796730:intron | 45.0% | |
TCCCTAGTGCCAATTTAGGT+GGG | + | chr5_3:8710192-8710211 | Msa0796730:intron | 45.0% | |
GCTTCCTAACTCAACTTCTC+TGG | - | chr5_3:8710268-8710287 | None:intergenic | 45.0% | |
! | CTATGCCATTTACCCTGCAT+TGG | + | chr5_3:8710449-8710468 | Msa0796730:intron | 45.0% |
TGGAACCAATGCAGGGTAAA+TGG | - | chr5_3:8710457-8710476 | None:intergenic | 45.0% | |
! | AGCAGGTCTCTGATTTTCCA+TGG | - | chr5_3:8710955-8710974 | None:intergenic | 45.0% |
GCTCAATTGCACCATGAAGT+AGG | - | chr5_3:8711135-8711154 | None:intergenic | 45.0% | |
AACTTCCGGATGCACATTCT+CGG | + | chr5_3:8711328-8711347 | Msa0796730:intron | 45.0% | |
AGCCTCCAGATATCAGAAAC+TGG | - | chr5_3:8711487-8711506 | None:intergenic | 45.0% | |
! | AGGTGCATGAAGGGGATTTT+GGG | - | chr5_3:8712163-8712182 | None:intergenic | 45.0% |
! | AAGGTGCATGAAGGGGATTT+TGG | - | chr5_3:8712164-8712183 | None:intergenic | 45.0% |
GAAACACAAGGTGCATGAAG+GGG | - | chr5_3:8712171-8712190 | None:intergenic | 45.0% | |
!! | ATGAAGCACCGACACATACA+TGG | + | chr5_3:8712213-8712232 | Msa0796730:intron | 45.0% |
! | TAATCACATGTGTCGGTCAC+CGG | + | chr5_3:8712300-8712319 | Msa0796730:intron | 45.0% |
ACTTTCGATCAATGCGTGTC+CGG | - | chr5_3:8712322-8712341 | None:intergenic | 45.0% | |
! | TGTGGCATTCGTACTGATAC+TGG | + | chr5_3:8712779-8712798 | Msa0796730:intron | 45.0% |
GGGTTATTAGGTGCTCTTGT+TGG | + | chr5_3:8712999-8713018 | Msa0796730:intron | 45.0% | |
GGAAATGGGATAAGATGAGG+AGG | + | chr5_3:8713057-8713076 | Msa0796730:intron | 45.0% | |
ATGATAGGTCAAGGTGGTGA+TGG | + | chr5_3:8713208-8713227 | Msa0796730:CDS | 45.0% | |
!! | GGTGATGGTGTTGTGTACAA+AGG | + | chr5_3:8713223-8713242 | Msa0796730:CDS | 45.0% |
ATAGGCTAACTTGGCCACAA+AGG | + | chr5_3:8713514-8713533 | Msa0796730:intron | 45.0% | |
! | TTTTGATCACTGATCGGGCT+TGG | + | chr5_3:8713830-8713849 | Msa0796730:CDS | 45.0% |
GCTTGGACACTTGCAAAATC+AGG | + | chr5_3:8713847-8713866 | Msa0796730:CDS | 45.0% | |
AGCAGTTAAAGATGAAGGGC+CGG | + | chr5_3:8713891-8713910 | Msa0796730:CDS | 45.0% | |
GATTCATGACCAAGTGGAAC+AGG | - | chr5_3:8714048-8714067 | None:intergenic | 45.0% | |
! | TCGTGTTGTTCGTTTGTGGG+AGG | + | chr5_3:8708615-8708634 | Msa0796730:CDS | 50.0% |
AGCACATGCATAACCAGCAC+AGG | - | chr5_3:8709464-8709483 | None:intergenic | 50.0% | |
!! | TGTGCTGGTTATGCATGTGC+TGG | + | chr5_3:8709463-8709482 | Msa0796730:CDS | 50.0% |
!! | AGCTCCATTGTGCCGCTTAT+TGG | + | chr5_3:8709823-8709842 | Msa0796730:CDS | 50.0% |
CAGACCAATAAGCGGCACAA+TGG | - | chr5_3:8709830-8709849 | None:intergenic | 50.0% | |
!! | TTGTGCCGCTTATTGGTCTG+AGG | + | chr5_3:8709830-8709849 | Msa0796730:CDS | 50.0% |
!! | TGTGCCGCTTATTGGTCTGA+GGG | + | chr5_3:8709831-8709850 | Msa0796730:CDS | 50.0% |
CTACCCCTCAGACCAATAAG+CGG | - | chr5_3:8709838-8709857 | None:intergenic | 50.0% | |
GAATCGAACCTGAGACCTCA+AGG | - | chr5_3:8710172-8710191 | None:intergenic | 50.0% | |
CTCCCTAGTGCCAATTTAGG+TGG | + | chr5_3:8710191-8710210 | Msa0796730:intron | 50.0% | |
GCCCACCTAAATTGGCACTA+GGG | - | chr5_3:8710196-8710215 | None:intergenic | 50.0% | |
AGCCCACCTAAATTGGCACT+AGG | - | chr5_3:8710197-8710216 | None:intergenic | 50.0% | |
GCTGCCAGAGAAGTTGAGTT+AGG | + | chr5_3:8710261-8710280 | Msa0796730:intron | 50.0% | |
TATTCAACCCGTGCGAAGCA+CGG | + | chr5_3:8710657-8710676 | Msa0796730:intron | 50.0% | |
TTACAAACCCGTGCTTCGCA+CGG | - | chr5_3:8710668-8710687 | None:intergenic | 50.0% | |
! | TGCATGAAGGGGATTTTGGG+GGG | - | chr5_3:8712160-8712179 | None:intergenic | 50.0% |
! | GTGCATGAAGGGGATTTTGG+GGG | - | chr5_3:8712161-8712180 | None:intergenic | 50.0% |
! | GGTGCATGAAGGGGATTTTG+GGG | - | chr5_3:8712162-8712181 | None:intergenic | 50.0% |
ACCGACACATACATGGACAC+CGG | + | chr5_3:8712220-8712239 | Msa0796730:intron | 50.0% | |
TCCGGTGTCCATGTATGTGT+CGG | - | chr5_3:8712224-8712243 | None:intergenic | 50.0% | |
CCAGCTGTCTTAGGATGTGT+AGG | - | chr5_3:8712909-8712928 | None:intergenic | 50.0% | |
CCTACACATCCTAAGACAGC+TGG | + | chr5_3:8712906-8712925 | Msa0796730:intron | 50.0% | |
TGAAGGGCCGGAGAAAATCA+TGG | + | chr5_3:8713903-8713922 | Msa0796730:CDS | 50.0% | |
GGCCGGAGAAAATCATGGAA+AGG | + | chr5_3:8713908-8713927 | Msa0796730:CDS | 50.0% | |
TTCCTGGATGGGATCGGTCT+TGG | + | chr5_3:8708581-8708600 | Msa0796730:CDS | 55.0% | |
GGTCCCTTGCTTCCCATGTT+TGG | + | chr5_3:8708955-8708974 | Msa0796730:CDS | 55.0% | |
! | TGATGAAGGTGTGCCTGTGC+TGG | + | chr5_3:8709448-8709467 | Msa0796730:CDS | 55.0% |
!! | GTGCCGCTTATTGGTCTGAG+GGG | + | chr5_3:8709832-8709851 | Msa0796730:CDS | 55.0% |
ACCACTAGGGCAACCCAAGT+GGG | - | chr5_3:8710120-8710139 | None:intergenic | 55.0% | |
! | TTGGGTTGCCCTAGTGGTGT+TGG | + | chr5_3:8710122-8710141 | Msa0796730:intron | 55.0% |
!! | TTGCCCTAGTGGTGTTGGCT+TGG | + | chr5_3:8710127-8710146 | Msa0796730:intron | 55.0% |
!! | TGCCCTAGTGGTGTTGGCTT+GGG | + | chr5_3:8710128-8710147 | Msa0796730:intron | 55.0% |
GTCCCAAGCCAACACCACTA+GGG | - | chr5_3:8710133-8710152 | None:intergenic | 55.0% | |
TCGAACCTGAGACCTCAAGG+AGG | - | chr5_3:8710169-8710188 | None:intergenic | 55.0% | |
ATTCAACCCGTGCGAAGCAC+GGG | + | chr5_3:8710658-8710677 | Msa0796730:intron | 55.0% | |
TACAAACCCGTGCTTCGCAC+GGG | - | chr5_3:8710667-8710686 | None:intergenic | 55.0% | |
!! | GCATGAAGGGGATTTTGGGG+GGG | - | chr5_3:8712159-8712178 | None:intergenic | 55.0% |
CCAAGTGGAACAGGCCTATC+TGG | - | chr5_3:8714039-8714058 | None:intergenic | 55.0% | |
CCAGATAGGCCTGTTCCACT+TGG | + | chr5_3:8714036-8714055 | Msa0796730:CDS | 55.0% | |
CTCCAAGACCGATCCCATCC+AGG | - | chr5_3:8708586-8708605 | None:intergenic | 60.0% | |
! | ACCCACTTGGGTTGCCCTAG+TGG | + | chr5_3:8710116-8710135 | Msa0796730:intron | 60.0% |
CACCACTAGGGCAACCCAAG+TGG | - | chr5_3:8710121-8710140 | None:intergenic | 60.0% | |
GGTCCCAAGCCAACACCACT+AGG | - | chr5_3:8710134-8710153 | None:intergenic | 60.0% | |
!! | AGTGGTGTTGGCTTGGGACC+TGG | + | chr5_3:8710134-8710153 | Msa0796730:intron | 60.0% |
!! | GTGGTGTTGGCTTGGGACCT+GGG | + | chr5_3:8710135-8710154 | Msa0796730:intron | 60.0% |
! | TCAAGGAGGAGCACACTCCC+AGG | - | chr5_3:8710155-8710174 | None:intergenic | 60.0% |
! | TGGGAGTGTGCTCCTCCTTG+AGG | + | chr5_3:8710154-8710173 | Msa0796730:intron | 60.0% |
GTGCTCCTCCTTGAGGTCTC+AGG | + | chr5_3:8710161-8710180 | Msa0796730:intron | 60.0% | |
CCGGTCCGAGAATGTGCATC+CGG | - | chr5_3:8711336-8711355 | None:intergenic | 60.0% | |
CCGGATGCACATTCTCGGAC+CGG | + | chr5_3:8711333-8711352 | Msa0796730:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_3 | gene | 8708538 | 8714104 | 8708538 | ID=Msa0796730;Name=Msa0796730 |
chr5_3 | mRNA | 8708538 | 8714104 | 8708538 | ID=Msa0796730-mRNA-1;Parent=Msa0796730;Name=Msa0796730-mRNA-1;_AED=0.40;_eAED=0.41;_QI=0|0|0.11|1|0.75|0.55|9|0|510 |
chr5_3 | exon | 8708538 | 8708699 | 8708538 | ID=Msa0796730-mRNA-1:exon:3688;Parent=Msa0796730-mRNA-1 |
chr5_3 | exon | 8708772 | 8709043 | 8708772 | ID=Msa0796730-mRNA-1:exon:3689;Parent=Msa0796730-mRNA-1 |
chr5_3 | exon | 8709155 | 8709265 | 8709155 | ID=Msa0796730-mRNA-1:exon:3690;Parent=Msa0796730-mRNA-1 |
chr5_3 | exon | 8709382 | 8709518 | 8709382 | ID=Msa0796730-mRNA-1:exon:3691;Parent=Msa0796730-mRNA-1 |
chr5_3 | exon | 8709608 | 8709692 | 8709608 | ID=Msa0796730-mRNA-1:exon:3692;Parent=Msa0796730-mRNA-1 |
chr5_3 | exon | 8709798 | 8709964 | 8709798 | ID=Msa0796730-mRNA-1:exon:3693;Parent=Msa0796730-mRNA-1 |
chr5_3 | exon | 8710761 | 8710872 | 8710761 | ID=Msa0796730-mRNA-1:exon:3694;Parent=Msa0796730-mRNA-1 |
chr5_3 | exon | 8713168 | 8713376 | 8713168 | ID=Msa0796730-mRNA-1:exon:3695;Parent=Msa0796730-mRNA-1 |
chr5_3 | exon | 8713827 | 8714104 | 8713827 | ID=Msa0796730-mRNA-1:exon:3696;Parent=Msa0796730-mRNA-1 |
chr5_3 | CDS | 8708538 | 8708699 | 8708538 | ID=Msa0796730-mRNA-1:cds;Parent=Msa0796730-mRNA-1 |
chr5_3 | CDS | 8708772 | 8709043 | 8708772 | ID=Msa0796730-mRNA-1:cds;Parent=Msa0796730-mRNA-1 |
chr5_3 | CDS | 8709155 | 8709265 | 8709155 | ID=Msa0796730-mRNA-1:cds;Parent=Msa0796730-mRNA-1 |
chr5_3 | CDS | 8709382 | 8709518 | 8709382 | ID=Msa0796730-mRNA-1:cds;Parent=Msa0796730-mRNA-1 |
chr5_3 | CDS | 8709608 | 8709692 | 8709608 | ID=Msa0796730-mRNA-1:cds;Parent=Msa0796730-mRNA-1 |
chr5_3 | CDS | 8709798 | 8709964 | 8709798 | ID=Msa0796730-mRNA-1:cds;Parent=Msa0796730-mRNA-1 |
chr5_3 | CDS | 8710761 | 8710872 | 8710761 | ID=Msa0796730-mRNA-1:cds;Parent=Msa0796730-mRNA-1 |
chr5_3 | CDS | 8713168 | 8713376 | 8713168 | ID=Msa0796730-mRNA-1:cds;Parent=Msa0796730-mRNA-1 |
chr5_3 | CDS | 8713827 | 8714104 | 8713827 | ID=Msa0796730-mRNA-1:cds;Parent=Msa0796730-mRNA-1 |
Gene Sequence |
Protein sequence |