AlfalfaGEDB | Msa0796900

M. sativa cultivar zhongmu-4 / Msa0796900

KEGG: K14498
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0796900	XP_039690494.1	90.294	340	16	1	7	329	1	340	0.0	624

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0796900	sp\|P0C5D6\|SAPK3_ORYSJ	71.053	304	69	2	9	295	2	303	7.46e-163	460

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0796900	G7JYM2	89.706	340	16	2	7	329	1	338	0.0	615

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0796900	MtrunA17_Chr5g0399911	86.969	353	16	2	7	329	1	353	0.0	614
Msa0796900	MtrunA17_Chr4g0055451	71.176	340	72	5	9	326	2	337	8.91e-174	485
Msa0796900	MtrunA17_Chr8g0385281	71.000	300	69	2	10	292	3	301	1.29e-158	447
Msa0796900	MtrunA17_Chr2g0277501	67.178	326	83	3	10	318	2	320	2.68e-158	446
Msa0796900	MtrunA17_Chr4g0045371	64.307	339	92	4	8	323	19	351	4.52e-158	446
Msa0796900	MtrunA17_Chr8g0381821	67.834	314	81	2	10	306	2	312	1.67e-157	444
Msa0796900	MtrunA17_Chr3g0131061	70.667	300	70	2	10	292	2	300	1.96e-157	444
Msa0796900	MtrunA17_Chr1g0162301	67.869	305	75	3	8	293	20	320	3.46e-153	434
Msa0796900	MtrunA17_Chr8g0374571	61.261	333	102	5	8	323	19	341	1.88e-149	424
Msa0796900	MtrunA17_Chr3g0123791	65.894	302	85	2	9	292	2	303	1.10e-147	419

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0796900	AT1G10940.1	70.333	300	71	2	10	292	2	300	1.03e-156	443
Msa0796900	AT5G63650.1	68.506	308	79	2	10	300	2	308	3.58e-156	442
Msa0796900	AT1G10940.2	68.506	308	71	2	10	292	2	308	2.38e-155	440
Msa0796900	AT4G33950.2	66.774	310	82	3	8	298	17	324	2.40e-155	439
Msa0796900	AT5G08590.1	69.000	300	74	2	10	292	2	299	2.42e-155	439
Msa0796900	AT4G33950.1	66.774	310	82	3	8	298	17	324	6.25e-155	439
Msa0796900	AT1G60940.1	68.667	300	76	2	10	292	2	300	3.74e-152	431
Msa0796900	AT1G60940.2	68.667	300	76	2	10	292	2	300	3.74e-152	431
Msa0796900	AT4G40010.1	66.561	314	82	4	10	301	2	314	1.86e-149	424
Msa0796900	AT2G23030.1	66.445	301	83	2	10	292	2	302	1.29e-148	422

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Find 87 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTAATTAAGTTGGACT+TGG	0.449550	5_3:-8948889	None:intergenic
AAACTTTGGAGTGGCTAGGT+TGG	0.550074	5_3:+8944603	Msa0796900:CDS
AAAGTGTGGAAGAAATCATG+CGG	0.656102	5_3:+8948753	Msa0796900:CDS
AAATATTATCAGGTTCAAAG+AGG	0.640987	5_3:+8945925	Msa0796900:CDS
AAATTTCAGAGCGAATATTA+CGG	0.466225	5_3:+8947906	Msa0796900:CDS
AAGTGTGGAAGAAATCATGC+GGG	0.653176	5_3:+8948754	Msa0796900:CDS
AATATTTACCTTAGCTGGAT+TGG	0.390762	5_3:-8948113	None:intergenic
AATGGTGGAACAAGCTCATT+GGG	0.454775	5_3:+8948812	Msa0796900:CDS
ACACATATCTGCAGATTGTA+GGG	0.539658	5_3:+8948066	Msa0796900:CDS
ACCTCTGGTGCAATATATGC+AGG	0.524189	5_3:-8946842	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCTATCAAATACATTGAAAG+AGG	+	chr5_3:8944655-8944674	Msa0796900:CDS	30.0%
ATGTGAGATCAGATAACTAT+TGG	-	chr5_3:8944847-8944866	None:intergenic	30.0%
TAGTTATCTGATCTCACATT+TGG	+	chr5_3:8944848-8944867	Msa0796900:intron	30.0%
TTTGAGTACTTCTTAGGATT+AGG	+	chr5_3:8945032-8945051	Msa0796900:intron	30.0%
TAATCTATAGTACTTCGTTG+TGG	-	chr5_3:8945815-8945834	None:intergenic	30.0%
AGATTGATGAGAATGTTCAA+AGG	+	chr5_3:8945870-8945889	Msa0796900:intron	30.0%
GATTGATGAGAATGTTCAAA+GGG	+	chr5_3:8945871-8945890	Msa0796900:intron	30.0%
TAGTTAACCATCGATCTTTA+AGG	+	chr5_3:8945897-8945916	Msa0796900:CDS	30.0%
ATATTGTCAAATAACGGCTA+TGG	-	chr5_3:8946384-8946403	None:intergenic	30.0%
TGATGAATTCCATATACTAC+AGG	+	chr5_3:8946434-8946453	Msa0796900:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	8944541	8948907	8944541	ID=Msa0796900;Name=Msa0796900
chr5_3	mRNA	8944541	8948907	8944541	ID=Msa0796900-mRNA-1;Parent=Msa0796900;Name=Msa0796900-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0\|0\|0\|1\|1\|1\|8\|0\|329
chr5_3	exon	8944541	8944684	8944541	ID=Msa0796900-mRNA-1:exon:3789;Parent=Msa0796900-mRNA-1
chr5_3	exon	8945872	8945946	8945872	ID=Msa0796900-mRNA-1:exon:3790;Parent=Msa0796900-mRNA-1
chr5_3	exon	8946026	8946130	8946026	ID=Msa0796900-mRNA-1:exon:3791;Parent=Msa0796900-mRNA-1
chr5_3	exon	8946609	8946701	8946609	ID=Msa0796900-mRNA-1:exon:3792;Parent=Msa0796900-mRNA-1
chr5_3	exon	8946800	8946892	8946800	ID=Msa0796900-mRNA-1:exon:3793;Parent=Msa0796900-mRNA-1
chr5_3	exon	8947823	8947927	8947823	ID=Msa0796900-mRNA-1:exon:3794;Parent=Msa0796900-mRNA-1
chr5_3	exon	8948028	8948126	8948028	ID=Msa0796900-mRNA-1:exon:3795;Parent=Msa0796900-mRNA-1
chr5_3	exon	8948632	8948907	8948632	ID=Msa0796900-mRNA-1:exon:3796;Parent=Msa0796900-mRNA-1
chr5_3	CDS	8944541	8944684	8944541	ID=Msa0796900-mRNA-1:cds;Parent=Msa0796900-mRNA-1
chr5_3	CDS	8945872	8945946	8945872	ID=Msa0796900-mRNA-1:cds;Parent=Msa0796900-mRNA-1
chr5_3	CDS	8946026	8946130	8946026	ID=Msa0796900-mRNA-1:cds;Parent=Msa0796900-mRNA-1
chr5_3	CDS	8946609	8946701	8946609	ID=Msa0796900-mRNA-1:cds;Parent=Msa0796900-mRNA-1
chr5_3	CDS	8946800	8946892	8946800	ID=Msa0796900-mRNA-1:cds;Parent=Msa0796900-mRNA-1
chr5_3	CDS	8947823	8947927	8947823	ID=Msa0796900-mRNA-1:cds;Parent=Msa0796900-mRNA-1
chr5_3	CDS	8948028	8948126	8948028	ID=Msa0796900-mRNA-1:cds;Parent=Msa0796900-mRNA-1
chr5_3	CDS	8948632	8948907	8948632	ID=Msa0796900-mRNA-1:cds;Parent=Msa0796900-mRNA-1

Gene Sequence

>Msa0796900

TATTATTTGGACTGTGAAATGGAGGAGGAAAGATACGAGATATTGAGGGACCTTGGTTCTGGAAACTTTGGAGTGGCTAGGTTGGCTAAAGACAAGAAGACAGGAGAACTTGTTGCTATCAAATACATTGAAAGAGGATATAAGATTGATGAGAATGTTCAAAGGGAGATAGTTAACCATCGATCTTTAAGGCATCCAAATATTATCAGGTTCAAAGAGGTATTTGTGACACCTACTCATTTGGCTATTGTCCTGGAGTATGCTGCTGGTGGTGAACTTTTTGACAGGATAGCCTCTGCTGGTCGACTCAGTGAAGATGAGGTTGAAATTTGTCATAGAGATCTGAAATTGGAGAACACTTTATTGGATGGAAGTCCAGCTCCTCGAGTTAAAATTTGTGACTTTGGTTTCTCCAAGTCGTCTTTACTCCACTCTCAGCCCAAATCAACAGTTGGAACTCCTGCATATATTGCACCAGAGGTTTTGTCTAGAAGAGAGTATGATGGGAAGATTGCAGATGTTTGGTCATGTGGTGTGACTCTTTATGTCATGTTAGTTGGATCATACCCTTTTGAAGATCCAGAAGATCCTAGAAATTTCAGAGCGAATATTACGAAAATAATGAATGTTCAATACTCGATACCTGACTATGTACACATATCTGCAGATTGTAGGGAACTTATCTCTCGTATTTTTGTTGCCAATCCAGCTAAGAGGATCACAATCTCAGAGATAAGACAACACCCTTGGTTTTGGAAGAACATGCCCAGAGAGATAGTTGAGGCTCAAAGAAAAGGTTACAATGAAATACAGATAGACCAATTACCAAGCCAACAAAGTGTGGAAGAAATCATGCGGGTCGTAGGAGAAGCAAGGATATCAGGGCTGGAAAACAATGGTGGAACAAGCTCATTGGGTGTTAACGTTGTTAAATGGATTGAAGAGGAAGTTGATGGTAGTGATGACTTTGTCCAAGTCCAACTTAATTAA

Protein sequence

>Msa0796900

YYLDCEMEEERYEILRDLGSGNFGVARLAKDKKTGELVAIKYIERGYKIDENVQREIVNHRSLRHPNIIRFKEVFVTPTHLAIVLEYAAGGELFDRIASAGRLSEDEVEICHRDLKLENTLLDGSPAPRVKICDFGFSKSSLLHSQPKSTVGTPAYIAPEVLSRREYDGKIADVWSCGVTLYVMLVGSYPFEDPEDPRNFRANITKIMNVQYSIPDYVHISADCRELISRIFVANPAKRITISEIRQHPWFWKNMPREIVEAQRKGYNEIQIDQLPSQQSVEEIMRVVGEARISGLENNGGTSSLGVNVVKWIEEEVDGSDDFVQVQLN*