Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0796930 | XP_039690787.1 | 62.295 | 122 | 27 | 3 | 1 | 103 | 9 | 130 | 3.49e-41 | 144 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0796930 | sp|Q8GRS2|TI11C_ORYSJ | 37.000 | 100 | 54 | 2 | 8 | 103 | 76 | 170 | 2.60e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0796930 | A0A396HMK7 | 62.295 | 122 | 27 | 3 | 1 | 103 | 9 | 130 | 1.67e-41 | 144 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0796930 | TF | Tify |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0796930 | MtrunA17_Chr5g0399861 | 62.295 | 122 | 27 | 3 | 1 | 103 | 9 | 130 | 3.21e-45 | 144 |
| Msa0796930 | MtrunA17_Chr5g0399881 | 62.295 | 122 | 27 | 3 | 1 | 103 | 9 | 130 | 4.89e-45 | 143 |
| Msa0796930 | MtrunA17_Chr5g0399851 | 60.714 | 112 | 19 | 2 | 17 | 103 | 2 | 113 | 1.01e-39 | 129 |
| Msa0796930 | MtrunA17_Chr2g0301131 | 32.576 | 132 | 41 | 3 | 19 | 103 | 96 | 226 | 8.61e-15 | 67.4 |
| Msa0796930 | MtrunA17_Chr4g0070271 | 42.857 | 84 | 37 | 3 | 26 | 103 | 91 | 169 | 1.29e-14 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0796930 | AT1G19180.2 | 37.143 | 105 | 40 | 3 | 25 | 103 | 49 | 153 | 5.10e-13 | 62.0 |
Find 21 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTACAAGAGGTTTCAAATT+TGG | 0.130518 | 5_3:-8982789 | Msa0796930:CDS |
| CTACAAGAGGTTTCAAATTT+GGG | 0.272831 | 5_3:-8982788 | Msa0796930:CDS |
| GGCTTCACTTCATCGGTTCT+TGG | 0.289096 | 5_3:-8981227 | Msa0796930:CDS |
| ATTGTCATTTGGGCACTTCT+AGG | 0.305926 | 5_3:+8982590 | None:intergenic |
| GGGGTGACTCTGAGCAAATC+TGG | 0.380764 | 5_3:+8982448 | None:intergenic |
| TTTCAAATTTGGGACATTCC+AGG | 0.386089 | 5_3:-8982778 | Msa0796930:intron |
| TCGAGAGGTAGTAGTTCCTT+TGG | 0.433772 | 5_3:+8982493 | None:intergenic |
| GGAGCTTGTTGAAAATTCAT+AGG | 0.439447 | 5_3:+8982821 | None:intergenic |
| ATTCAGATTTATCAATTACT+AGG | 0.446451 | 5_3:-8981252 | Msa0796930:intron |
| TTCATCGGTTCTTGGAAAGA+AGG | 0.486928 | 5_3:-8981219 | Msa0796930:CDS |
| AAACCTCTTGTAGAAAGAGA+TGG | 0.490315 | 5_3:+8982798 | None:intergenic |
| TCCCCATCTCTTTCTACAAG+AGG | 0.509375 | 5_3:-8982801 | Msa0796930:CDS |
| AGATTTATCAATTACTAGGA+AGG | 0.513206 | 5_3:-8981248 | Msa0796930:CDS |
| AACCTCTTGTAGAAAGAGAT+GGG | 0.514919 | 5_3:+8982799 | None:intergenic |
| CTAGGAAGGCTTCACTTCAT+CGG | 0.521487 | 5_3:-8981234 | Msa0796930:CDS |
| AATGAAGACTAATATTATCA+AGG | 0.534533 | 5_3:-8982618 | Msa0796930:CDS |
| TCGGTTCTTGGAAAGAAGGA+TGG | 0.543639 | 5_3:-8981215 | Msa0796930:CDS |
| TCTTGGAAAGAAGGATGGAT+AGG | 0.575095 | 5_3:-8981210 | Msa0796930:CDS |
| TGGAAGCGTAGTTATTGCTG+TGG | 0.608871 | 5_3:+8982468 | None:intergenic |
| GTTATTGCTGTGGTTTCGAG+AGG | 0.614841 | 5_3:+8982478 | None:intergenic |
| ACCTCTTGTAGAAAGAGATG+GGG | 0.650821 | 5_3:+8982800 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTATGGTAAAAAAAAAT+CGG | - | chr5_3:8981719-8981738 | Msa0796930:intron | 10.0% |
| !!! | TATTTTTTTTTCTAAATACA+AGG | + | chr5_3:8981914-8981933 | None:intergenic | 10.0% |
| !!! | TTAGAAAAAAAAATAGATTT+TGG | - | chr5_3:8981919-8981938 | Msa0796930:intron | 10.0% |
| !!! | AAATAAAAAAATTGATTCTT+TGG | - | chr5_3:8982034-8982053 | Msa0796930:intron | 10.0% |
| !!! | TATTTTATTTTTTTTTAGTG+GGG | + | chr5_3:8982511-8982530 | None:intergenic | 10.0% |
| !! | AAATCTGAATAAATATTAAA+AGG | + | chr5_3:8982826-8982845 | None:intergenic | 10.0% |
| !! | TATTTATGGTAAAAAAAAAT+CGG | - | chr5_3:8981719-8981738 | Msa0796930:intron | 10.0% |
| !!! | TATTTTTTTTTCTAAATACA+AGG | + | chr5_3:8981914-8981933 | None:intergenic | 10.0% |
| !!! | TTAGAAAAAAAAATAGATTT+TGG | - | chr5_3:8981919-8981938 | Msa0796930:intron | 10.0% |
| !!! | AAATAAAAAAATTGATTCTT+TGG | - | chr5_3:8982034-8982053 | Msa0796930:intron | 10.0% |
| !!! | TATTTTATTTTTTTTTAGTG+GGG | + | chr5_3:8982511-8982530 | None:intergenic | 10.0% |
| !! | AAATCTGAATAAATATTAAA+AGG | + | chr5_3:8982826-8982845 | None:intergenic | 10.0% |
| !!! | ATCATAAAAAATTGTCATTT+GGG | + | chr5_3:8981511-8981530 | None:intergenic | 15.0% |
| !!! | AAATGACAATTTTTTATGAT+GGG | - | chr5_3:8981511-8981530 | Msa0796930:intron | 15.0% |
| !!! | TTTTTTTTACCATAAATAAC+AGG | + | chr5_3:8981717-8981736 | None:intergenic | 15.0% |
| !!! | TTATGTATGGTTTTAAATTT+TGG | - | chr5_3:8982136-8982155 | Msa0796930:intron | 15.0% |
| !!! | ATTTTATTTTTTTTTAGTGG+GGG | + | chr5_3:8982510-8982529 | None:intergenic | 15.0% |
| !! | TTTAAATATGAGATGTATTA+TGG | + | chr5_3:8982554-8982573 | None:intergenic | 15.0% |
| !!! | TATACAATTTTACTTAATCA+GGG | + | chr5_3:8982608-8982627 | None:intergenic | 15.0% |
| !!! | ATATACAATTTTACTTAATC+AGG | + | chr5_3:8982609-8982628 | None:intergenic | 15.0% |
| !!! | ATCATAAAAAATTGTCATTT+GGG | + | chr5_3:8981511-8981530 | None:intergenic | 15.0% |
| !!! | AAATGACAATTTTTTATGAT+GGG | - | chr5_3:8981511-8981530 | Msa0796930:intron | 15.0% |
| !!! | TTTTTTTTACCATAAATAAC+AGG | + | chr5_3:8981717-8981736 | None:intergenic | 15.0% |
| !!! | TTATGTATGGTTTTAAATTT+TGG | - | chr5_3:8982136-8982155 | Msa0796930:intron | 15.0% |
| !!! | ATTTTATTTTTTTTTAGTGG+GGG | + | chr5_3:8982510-8982529 | None:intergenic | 15.0% |
| !! | TTTAAATATGAGATGTATTA+TGG | + | chr5_3:8982554-8982573 | None:intergenic | 15.0% |
| !!! | TATACAATTTTACTTAATCA+GGG | + | chr5_3:8982608-8982627 | None:intergenic | 15.0% |
| !!! | ATATACAATTTTACTTAATC+AGG | + | chr5_3:8982609-8982628 | None:intergenic | 15.0% |
| !! | AGTAGCTAAAAAAATGTTAA+TGG | + | chr5_3:8981370-8981389 | None:intergenic | 20.0% |
| !! | AATGAAGACTAATATTATCA+AGG | - | chr5_3:8981470-8981489 | Msa0796930:intron | 20.0% |
| !! | CATCATAAAAAATTGTCATT+TGG | + | chr5_3:8981512-8981531 | None:intergenic | 20.0% |
| !!! | CAAATGACAATTTTTTATGA+TGG | - | chr5_3:8981510-8981529 | Msa0796930:intron | 20.0% |
| !! | AAAAAAAATCGGATATCTAA+TGG | - | chr5_3:8981730-8981749 | Msa0796930:intron | 20.0% |
| !! | AAAAAAATCGGATATCTAAT+GGG | - | chr5_3:8981731-8981750 | Msa0796930:intron | 20.0% |
| !!! | TTAAAAAAATCTAAAGCTGT+TGG | - | chr5_3:8981827-8981846 | Msa0796930:intron | 20.0% |
| !!! | TGAAATAGATTTTCATTTTG+AGG | - | chr5_3:8981952-8981971 | Msa0796930:intron | 20.0% |
| !! | TAGATTTGAAGATTTGAATT+TGG | - | chr5_3:8982373-8982392 | Msa0796930:intron | 20.0% |
| !! | AGATTTGAAGATTTGAATTT+GGG | - | chr5_3:8982374-8982393 | Msa0796930:intron | 20.0% |
| !!! | TTTTATTTTTTTTTAGTGGG+GGG | + | chr5_3:8982509-8982528 | None:intergenic | 20.0% |
| !!! | ATACAATTTTACTTAATCAG+GGG | + | chr5_3:8982607-8982626 | None:intergenic | 20.0% |
| !! | ATTCAGATTTATCAATTACT+AGG | - | chr5_3:8982836-8982855 | Msa0796930:exon | 20.0% |
| !! | AGTAGCTAAAAAAATGTTAA+TGG | + | chr5_3:8981370-8981389 | None:intergenic | 20.0% |
| !! | AATGAAGACTAATATTATCA+AGG | - | chr5_3:8981470-8981489 | Msa0796930:intron | 20.0% |
| !! | CATCATAAAAAATTGTCATT+TGG | + | chr5_3:8981512-8981531 | None:intergenic | 20.0% |
| !!! | CAAATGACAATTTTTTATGA+TGG | - | chr5_3:8981510-8981529 | Msa0796930:intron | 20.0% |
| !! | AAAAAAAATCGGATATCTAA+TGG | - | chr5_3:8981730-8981749 | Msa0796930:intron | 20.0% |
| !! | AAAAAAATCGGATATCTAAT+GGG | - | chr5_3:8981731-8981750 | Msa0796930:intron | 20.0% |
| !!! | TTAAAAAAATCTAAAGCTGT+TGG | - | chr5_3:8981827-8981846 | Msa0796930:intron | 20.0% |
| !!! | TGAAATAGATTTTCATTTTG+AGG | - | chr5_3:8981952-8981971 | Msa0796930:intron | 20.0% |
| !! | TAGATTTGAAGATTTGAATT+TGG | - | chr5_3:8982373-8982392 | Msa0796930:intron | 20.0% |
| !! | AGATTTGAAGATTTGAATTT+GGG | - | chr5_3:8982374-8982393 | Msa0796930:intron | 20.0% |
| !!! | TTTTATTTTTTTTTAGTGGG+GGG | + | chr5_3:8982509-8982528 | None:intergenic | 20.0% |
| !!! | ATACAATTTTACTTAATCAG+GGG | + | chr5_3:8982607-8982626 | None:intergenic | 20.0% |
| !! | ATTCAGATTTATCAATTACT+AGG | - | chr5_3:8982836-8982855 | Msa0796930:exon | 20.0% |
| ! | CATGATTCATGTTTATAACA+TGG | - | chr5_3:8981402-8981421 | Msa0796930:intron | 25.0% |
| !!! | AAATTTCTAGCAAGAAATGA+GGG | + | chr5_3:8981663-8981682 | None:intergenic | 25.0% |
| !!! | AAAATTTCTAGCAAGAAATG+AGG | + | chr5_3:8981664-8981683 | None:intergenic | 25.0% |
| ! | GATTTGAAGATTTGAATTTG+GGG | - | chr5_3:8982375-8982394 | Msa0796930:intron | 25.0% |
| ! | ATCTTACCTAAAATATTAGG+GGG | + | chr5_3:8982657-8982676 | None:intergenic | 25.0% |
| ! | GATCTTACCTAAAATATTAG+GGG | + | chr5_3:8982658-8982677 | None:intergenic | 25.0% |
| ! | GGATCTTACCTAAAATATTA+GGG | + | chr5_3:8982659-8982678 | None:intergenic | 25.0% |
| !! | ACTACCACAATTTAAAACTA+CGG | - | chr5_3:8982769-8982788 | Msa0796930:intron | 25.0% |
| !!! | AAAACCGTAGTTTTAAATTG+TGG | + | chr5_3:8982776-8982795 | None:intergenic | 25.0% |
| ! | AGATTTATCAATTACTAGGA+AGG | - | chr5_3:8982840-8982859 | Msa0796930:exon | 25.0% |
| ! | CATGATTCATGTTTATAACA+TGG | - | chr5_3:8981402-8981421 | Msa0796930:intron | 25.0% |
| !!! | AAATTTCTAGCAAGAAATGA+GGG | + | chr5_3:8981663-8981682 | None:intergenic | 25.0% |
| !!! | AAAATTTCTAGCAAGAAATG+AGG | + | chr5_3:8981664-8981683 | None:intergenic | 25.0% |
| ! | GATTTGAAGATTTGAATTTG+GGG | - | chr5_3:8982375-8982394 | Msa0796930:intron | 25.0% |
| ! | ATCTTACCTAAAATATTAGG+GGG | + | chr5_3:8982657-8982676 | None:intergenic | 25.0% |
| ! | GATCTTACCTAAAATATTAG+GGG | + | chr5_3:8982658-8982677 | None:intergenic | 25.0% |
| ! | GGATCTTACCTAAAATATTA+GGG | + | chr5_3:8982659-8982678 | None:intergenic | 25.0% |
| !! | ACTACCACAATTTAAAACTA+CGG | - | chr5_3:8982769-8982788 | Msa0796930:intron | 25.0% |
| !!! | AAAACCGTAGTTTTAAATTG+TGG | + | chr5_3:8982776-8982795 | None:intergenic | 25.0% |
| ! | AGATTTATCAATTACTAGGA+AGG | - | chr5_3:8982840-8982859 | Msa0796930:exon | 25.0% |
| !!! | ATGTTGCTTTGTGCTATTTT+TGG | + | chr5_3:8981223-8981242 | None:intergenic | 30.0% |
| TCTACAAGAGGTTTCAAATT+TGG | - | chr5_3:8981299-8981318 | Msa0796930:intron | 30.0% | |
| CTACAAGAGGTTTCAAATTT+GGG | - | chr5_3:8981300-8981319 | Msa0796930:intron | 30.0% | |
| TGAAAAAGTCAACGATATCA+TGG | - | chr5_3:8981563-8981582 | Msa0796930:intron | 30.0% | |
| !! | AATTTCTAGCAAGAAATGAG+GGG | + | chr5_3:8981662-8981681 | None:intergenic | 30.0% |
| !! | TTGTGTAACGGTTTTATGTA+TGG | - | chr5_3:8982123-8982142 | Msa0796930:intron | 30.0% |
| ! | TTAAATTTTGGATGCAGTTG+CGG | - | chr5_3:8982148-8982167 | Msa0796930:intron | 30.0% |
| TTAAAGTTAAATAGTAGCCG+TGG | + | chr5_3:8982302-8982321 | None:intergenic | 30.0% | |
| CGGATCTTACCTAAAATATT+AGG | + | chr5_3:8982660-8982679 | None:intergenic | 30.0% | |
| AATAAATAGCATAAGACCAG+TGG | + | chr5_3:8982683-8982702 | None:intergenic | 30.0% | |
| !!! | ATGTTGCTTTGTGCTATTTT+TGG | + | chr5_3:8981223-8981242 | None:intergenic | 30.0% |
| TCTACAAGAGGTTTCAAATT+TGG | - | chr5_3:8981299-8981318 | Msa0796930:intron | 30.0% | |
| CTACAAGAGGTTTCAAATTT+GGG | - | chr5_3:8981300-8981319 | Msa0796930:intron | 30.0% | |
| TGAAAAAGTCAACGATATCA+TGG | - | chr5_3:8981563-8981582 | Msa0796930:intron | 30.0% | |
| !! | AATTTCTAGCAAGAAATGAG+GGG | + | chr5_3:8981662-8981681 | None:intergenic | 30.0% |
| !! | TTGTGTAACGGTTTTATGTA+TGG | - | chr5_3:8982123-8982142 | Msa0796930:intron | 30.0% |
| ! | TTAAATTTTGGATGCAGTTG+CGG | - | chr5_3:8982148-8982167 | Msa0796930:intron | 30.0% |
| TTAAAGTTAAATAGTAGCCG+TGG | + | chr5_3:8982302-8982321 | None:intergenic | 30.0% | |
| CGGATCTTACCTAAAATATT+AGG | + | chr5_3:8982660-8982679 | None:intergenic | 30.0% | |
| AATAAATAGCATAAGACCAG+TGG | + | chr5_3:8982683-8982702 | None:intergenic | 30.0% | |
| !! | GGAGCTTGTTGAAAATTCAT+AGG | + | chr5_3:8981270-8981289 | None:intergenic | 35.0% |
| AACCTCTTGTAGAAAGAGAT+GGG | + | chr5_3:8981292-8981311 | None:intergenic | 35.0% | |
| AAACCTCTTGTAGAAAGAGA+TGG | + | chr5_3:8981293-8981312 | None:intergenic | 35.0% | |
| ! | TTTCAAATTTGGGACATTCC+AGG | - | chr5_3:8981310-8981329 | Msa0796930:intron | 35.0% |
| !!! | ATATCGTTGACTTTTTCAGC+TGG | + | chr5_3:8981561-8981580 | None:intergenic | 35.0% |
| TGGTATTTGAGCTGAATTGT+TGG | + | chr5_3:8981688-8981707 | None:intergenic | 35.0% | |
| CCATAAATAACAGGTGTAGA+TGG | + | chr5_3:8981708-8981727 | None:intergenic | 35.0% | |
| ! | CCATCTACACCTGTTATTTA+TGG | - | chr5_3:8981705-8981724 | Msa0796930:intron | 35.0% |
| TAAACTGCCCAATATTTGAG+AGG | - | chr5_3:8982091-8982110 | Msa0796930:intron | 35.0% | |
| AAACTGCCCAATATTTGAGA+GGG | - | chr5_3:8982092-8982111 | Msa0796930:intron | 35.0% | |
| ATTGAAATCGTCTTATGCAG+TGG | - | chr5_3:8982449-8982468 | Msa0796930:intron | 35.0% | |
| TTAATAGACCCTCTCTCATT+TGG | - | chr5_3:8982579-8982598 | Msa0796930:CDS | 35.0% | |
| !! | GGAGCTTGTTGAAAATTCAT+AGG | + | chr5_3:8981270-8981289 | None:intergenic | 35.0% |
| AACCTCTTGTAGAAAGAGAT+GGG | + | chr5_3:8981292-8981311 | None:intergenic | 35.0% | |
| AAACCTCTTGTAGAAAGAGA+TGG | + | chr5_3:8981293-8981312 | None:intergenic | 35.0% | |
| ! | TTTCAAATTTGGGACATTCC+AGG | - | chr5_3:8981310-8981329 | Msa0796930:intron | 35.0% |
| !!! | ATATCGTTGACTTTTTCAGC+TGG | + | chr5_3:8981561-8981580 | None:intergenic | 35.0% |
| TGGTATTTGAGCTGAATTGT+TGG | + | chr5_3:8981688-8981707 | None:intergenic | 35.0% | |
| CCATAAATAACAGGTGTAGA+TGG | + | chr5_3:8981708-8981727 | None:intergenic | 35.0% | |
| ! | CCATCTACACCTGTTATTTA+TGG | - | chr5_3:8981705-8981724 | Msa0796930:intron | 35.0% |
| TAAACTGCCCAATATTTGAG+AGG | - | chr5_3:8982091-8982110 | Msa0796930:intron | 35.0% | |
| AAACTGCCCAATATTTGAGA+GGG | - | chr5_3:8982092-8982111 | Msa0796930:intron | 35.0% | |
| ATTGAAATCGTCTTATGCAG+TGG | - | chr5_3:8982449-8982468 | Msa0796930:intron | 35.0% | |
| TTAATAGACCCTCTCTCATT+TGG | - | chr5_3:8982579-8982598 | Msa0796930:CDS | 35.0% | |
| ACCTCTTGTAGAAAGAGATG+GGG | + | chr5_3:8981291-8981310 | None:intergenic | 40.0% | |
| GTAGCAAAAGAACATGTACC+TGG | + | chr5_3:8981331-8981350 | None:intergenic | 40.0% | |
| ! | ATTGTCATTTGGGCACTTCT+AGG | + | chr5_3:8981501-8981520 | None:intergenic | 40.0% |
| ! | ATCATGGTCTTTTGCACCAA+AGG | - | chr5_3:8981579-8981598 | Msa0796930:intron | 40.0% |
| CAAGCACCCTCTCAAATATT+GGG | + | chr5_3:8982101-8982120 | None:intergenic | 40.0% | |
| AATGCGTATTGCTACTGTTG+CGG | - | chr5_3:8982209-8982228 | Msa0796930:intron | 40.0% | |
| AGTTAAATAGTAGCCGTGGT+GGG | + | chr5_3:8982298-8982317 | None:intergenic | 40.0% | |
| AAGTTAAATAGTAGCCGTGG+TGG | + | chr5_3:8982299-8982318 | None:intergenic | 40.0% | |
| ! | TTCGCTCCCCCTAATATTTT+AGG | - | chr5_3:8982648-8982667 | Msa0796930:intron | 40.0% |
| AAATAGCATAAGACCAGTGG+CGG | + | chr5_3:8982680-8982699 | None:intergenic | 40.0% | |
| CTGCAATTACAATGCCATCA+CGG | - | chr5_3:8982744-8982763 | Msa0796930:intron | 40.0% | |
| AATTGTGGTAGTTTCCGTGA+TGG | + | chr5_3:8982761-8982780 | None:intergenic | 40.0% | |
| !! | TTCATCGGTTCTTGGAAAGA+AGG | - | chr5_3:8982869-8982888 | Msa0796930:five_prime_UTR | 40.0% |
| TCTTGGAAAGAAGGATGGAT+AGG | - | chr5_3:8982878-8982897 | Msa0796930:five_prime_UTR | 40.0% | |
| ACCTCTTGTAGAAAGAGATG+GGG | + | chr5_3:8981291-8981310 | None:intergenic | 40.0% | |
| GTAGCAAAAGAACATGTACC+TGG | + | chr5_3:8981331-8981350 | None:intergenic | 40.0% | |
| ! | ATTGTCATTTGGGCACTTCT+AGG | + | chr5_3:8981501-8981520 | None:intergenic | 40.0% |
| ! | ATCATGGTCTTTTGCACCAA+AGG | - | chr5_3:8981579-8981598 | Msa0796930:intron | 40.0% |
| CAAGCACCCTCTCAAATATT+GGG | + | chr5_3:8982101-8982120 | None:intergenic | 40.0% | |
| AATGCGTATTGCTACTGTTG+CGG | - | chr5_3:8982209-8982228 | Msa0796930:intron | 40.0% | |
| AGTTAAATAGTAGCCGTGGT+GGG | + | chr5_3:8982298-8982317 | None:intergenic | 40.0% | |
| AAGTTAAATAGTAGCCGTGG+TGG | + | chr5_3:8982299-8982318 | None:intergenic | 40.0% | |
| ! | TTCGCTCCCCCTAATATTTT+AGG | - | chr5_3:8982648-8982667 | Msa0796930:intron | 40.0% |
| AAATAGCATAAGACCAGTGG+CGG | + | chr5_3:8982680-8982699 | None:intergenic | 40.0% | |
| CTGCAATTACAATGCCATCA+CGG | - | chr5_3:8982744-8982763 | Msa0796930:intron | 40.0% | |
| AATTGTGGTAGTTTCCGTGA+TGG | + | chr5_3:8982761-8982780 | None:intergenic | 40.0% | |
| !! | TTCATCGGTTCTTGGAAAGA+AGG | - | chr5_3:8982869-8982888 | Msa0796930:five_prime_UTR | 40.0% |
| TCTTGGAAAGAAGGATGGAT+AGG | - | chr5_3:8982878-8982897 | Msa0796930:five_prime_UTR | 40.0% | |
| TCCCCATCTCTTTCTACAAG+AGG | - | chr5_3:8981287-8981306 | Msa0796930:intron | 45.0% | |
| TCGAGAGGTAGTAGTTCCTT+TGG | + | chr5_3:8981598-8981617 | None:intergenic | 45.0% | |
| GTTATTGCTGTGGTTTCGAG+AGG | + | chr5_3:8981613-8981632 | None:intergenic | 45.0% | |
| ! | TGGAAGCGTAGTTATTGCTG+TGG | + | chr5_3:8981623-8981642 | None:intergenic | 45.0% |
| CCAAGCACCCTCTCAAATAT+TGG | + | chr5_3:8982102-8982121 | None:intergenic | 45.0% | |
| !! | CCAATATTTGAGAGGGTGCT+TGG | - | chr5_3:8982099-8982118 | Msa0796930:intron | 45.0% |
| !! | AGGGTGCTTGGTTTGTGTAA+CGG | - | chr5_3:8982111-8982130 | Msa0796930:intron | 45.0% |
| GGTCAATAGTGTATGCATGG+TGG | + | chr5_3:8982277-8982296 | None:intergenic | 45.0% | |
| GTGGGTCAATAGTGTATGCA+TGG | + | chr5_3:8982280-8982299 | None:intergenic | 45.0% | |
| CATACACTATTGACCCACCA+CGG | - | chr5_3:8982282-8982301 | Msa0796930:intron | 45.0% | |
| GAAATCGTCTTATGCAGTGG+CGG | - | chr5_3:8982452-8982471 | Msa0796930:intron | 45.0% | |
| !! | TTTTAGGTAAGATCCGCCAC+TGG | - | chr5_3:8982664-8982683 | Msa0796930:intron | 45.0% |
| CTAGGAAGGCTTCACTTCAT+CGG | - | chr5_3:8982854-8982873 | Msa0796930:five_prime_UTR | 45.0% | |
| TCGGTTCTTGGAAAGAAGGA+TGG | - | chr5_3:8982873-8982892 | Msa0796930:five_prime_UTR | 45.0% | |
| TCCCCATCTCTTTCTACAAG+AGG | - | chr5_3:8981287-8981306 | Msa0796930:intron | 45.0% | |
| TCGAGAGGTAGTAGTTCCTT+TGG | + | chr5_3:8981598-8981617 | None:intergenic | 45.0% | |
| GTTATTGCTGTGGTTTCGAG+AGG | + | chr5_3:8981613-8981632 | None:intergenic | 45.0% | |
| ! | TGGAAGCGTAGTTATTGCTG+TGG | + | chr5_3:8981623-8981642 | None:intergenic | 45.0% |
| CCAAGCACCCTCTCAAATAT+TGG | + | chr5_3:8982102-8982121 | None:intergenic | 45.0% | |
| !! | CCAATATTTGAGAGGGTGCT+TGG | - | chr5_3:8982099-8982118 | Msa0796930:intron | 45.0% |
| !! | AGGGTGCTTGGTTTGTGTAA+CGG | - | chr5_3:8982111-8982130 | Msa0796930:intron | 45.0% |
| GGTCAATAGTGTATGCATGG+TGG | + | chr5_3:8982277-8982296 | None:intergenic | 45.0% | |
| GTGGGTCAATAGTGTATGCA+TGG | + | chr5_3:8982280-8982299 | None:intergenic | 45.0% | |
| CATACACTATTGACCCACCA+CGG | - | chr5_3:8982282-8982301 | Msa0796930:intron | 45.0% | |
| GAAATCGTCTTATGCAGTGG+CGG | - | chr5_3:8982452-8982471 | Msa0796930:intron | 45.0% | |
| !! | TTTTAGGTAAGATCCGCCAC+TGG | - | chr5_3:8982664-8982683 | Msa0796930:intron | 45.0% |
| CTAGGAAGGCTTCACTTCAT+CGG | - | chr5_3:8982854-8982873 | Msa0796930:five_prime_UTR | 45.0% | |
| TCGGTTCTTGGAAAGAAGGA+TGG | - | chr5_3:8982873-8982892 | Msa0796930:five_prime_UTR | 45.0% | |
| !!! | TTATTTTATTTTTTTTTAGT+GGG | + | chr5_3:8982512-8982531 | None:intergenic | 5.0% |
| !!! | TTTATTTTATTTTTTTTTAG+TGG | + | chr5_3:8982513-8982532 | None:intergenic | 5.0% |
| !!! | TTATTTTATTTTTTTTTAGT+GGG | + | chr5_3:8982512-8982531 | None:intergenic | 5.0% |
| !!! | TTTATTTTATTTTTTTTTAG+TGG | + | chr5_3:8982513-8982532 | None:intergenic | 5.0% |
| TTTGGATGCAGTTGCGGATG+CGG | - | chr5_3:8982154-8982173 | Msa0796930:intron | 50.0% | |
| GGAGCTCTTAAAGAGCCCAT+GGG | - | chr5_3:8982473-8982492 | Msa0796930:CDS | 50.0% | |
| !! | GGCTTCACTTCATCGGTTCT+TGG | - | chr5_3:8982861-8982880 | Msa0796930:five_prime_UTR | 50.0% |
| TTTGGATGCAGTTGCGGATG+CGG | - | chr5_3:8982154-8982173 | Msa0796930:intron | 50.0% | |
| GGAGCTCTTAAAGAGCCCAT+GGG | - | chr5_3:8982473-8982492 | Msa0796930:CDS | 50.0% | |
| !! | GGCTTCACTTCATCGGTTCT+TGG | - | chr5_3:8982861-8982880 | Msa0796930:five_prime_UTR | 50.0% |
| GGGGTGACTCTGAGCAAATC+TGG | + | chr5_3:8981643-8981662 | None:intergenic | 55.0% | |
| CGGAGCTCTTAAAGAGCCCA+TGG | - | chr5_3:8982472-8982491 | Msa0796930:CDS | 55.0% | |
| TAAAGAGCCCATGGGAGCAG+TGG | - | chr5_3:8982481-8982500 | Msa0796930:CDS | 55.0% | |
| CAGGGGAGCCAAATGAGAGA+GGG | + | chr5_3:8982590-8982609 | None:intergenic | 55.0% | |
| TCAGGGGAGCCAAATGAGAG+AGG | + | chr5_3:8982591-8982610 | None:intergenic | 55.0% | |
| GGGGTGACTCTGAGCAAATC+TGG | + | chr5_3:8981643-8981662 | None:intergenic | 55.0% | |
| CGGAGCTCTTAAAGAGCCCA+TGG | - | chr5_3:8982472-8982491 | Msa0796930:CDS | 55.0% | |
| TAAAGAGCCCATGGGAGCAG+TGG | - | chr5_3:8982481-8982500 | Msa0796930:CDS | 55.0% | |
| CAGGGGAGCCAAATGAGAGA+GGG | + | chr5_3:8982590-8982609 | None:intergenic | 55.0% | |
| TCAGGGGAGCCAAATGAGAG+AGG | + | chr5_3:8982591-8982610 | None:intergenic | 55.0% | |
| GCGGTCATTGCAGTTGCGCA+CGG | - | chr5_3:8982173-8982192 | Msa0796930:intron | 60.0% | |
| GCGGTCATTGCAGTTGCGCA+CGG | - | chr5_3:8982173-8982192 | Msa0796930:intron | 60.0% | |
| GGGGGAGCCACTGCTCCCAT+GGG | + | chr5_3:8982491-8982510 | None:intergenic | 70.0% | |
| GGGGGAGCCACTGCTCCCAT+GGG | + | chr5_3:8982491-8982510 | None:intergenic | 70.0% | |
| GGGGGGAGCCACTGCTCCCA+TGG | + | chr5_3:8982492-8982511 | None:intergenic | 75.0% | |
| GGGGGGAGCCACTGCTCCCA+TGG | + | chr5_3:8982492-8982511 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 8981191 | 8982919 | 8981191 | ID=Msa0796930;Name=Msa0796930 |
| chr5_3 | mRNA | 8981191 | 8982919 | 8981191 | ID=Msa0796930-mRNA-1;Parent=Msa0796930;Name=Msa0796930-mRNA-1;_AED=0.38;_eAED=0.38;_QI=79|0.5|0.66|1|0.5|0.66|3|16|103 |
| chr5_3 | exon | 8981191 | 8981268 | 8981191 | ID=Msa0796930-mRNA-1:exon:3823;Parent=Msa0796930-mRNA-1 |
| chr5_3 | exon | 8982456 | 8982643 | 8982456 | ID=Msa0796930-mRNA-1:exon:3822;Parent=Msa0796930-mRNA-1 |
| chr5_3 | exon | 8982779 | 8982919 | 8982779 | ID=Msa0796930-mRNA-1:exon:3821;Parent=Msa0796930-mRNA-1 |
| chr5_3 | five_prime_UTR | 8982841 | 8982919 | 8982841 | ID=Msa0796930-mRNA-1:five_prime_utr;Parent=Msa0796930-mRNA-1 |
| chr5_3 | CDS | 8982779 | 8982840 | 8982779 | ID=Msa0796930-mRNA-1:cds;Parent=Msa0796930-mRNA-1 |
| chr5_3 | CDS | 8982456 | 8982643 | 8982456 | ID=Msa0796930-mRNA-1:cds;Parent=Msa0796930-mRNA-1 |
| chr5_3 | CDS | 8981207 | 8981268 | 8981207 | ID=Msa0796930-mRNA-1:cds;Parent=Msa0796930-mRNA-1 |
| chr5_3 | three_prime_UTR | 8981191 | 8981206 | 8981191 | ID=Msa0796930-mRNA-1:three_prime_utr;Parent=Msa0796930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
