AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0797730

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0797730 MtrunA17_Chr5g0401061 98.980 294 3 0 1 294 1 294 0.0 588
Msa0797730 MtrunA17_Chr4g0054131 65.484 310 90 6 1 294 1 309 1.14e-104 307
Msa0797730 MtrunA17_Chr2g0293381 48.548 241 117 5 1 236 1 239 2.61e-66 209
Msa0797730 MtrunA17_Chr8g0384671 48.117 239 119 5 1 236 1 237 9.79e-64 202
Msa0797730 MtrunA17_Chr1g0166681 66.292 89 28 1 1 89 1 87 4.55e-33 120
Msa0797730 MtrunA17_Chr8g0342871 32.862 283 159 6 1 270 1 265 6.88e-32 119
Msa0797730 MtrunA17_Chr2g0329921 36.681 229 84 7 1 187 1 210 1.11e-31 119
Msa0797730 MtrunA17_Chr8g0383821 43.519 108 60 1 1 107 1 108 7.03e-24 94.4
Msa0797730 MtrunA17_Chr1g0195261 66.000 50 17 0 1 50 1 50 4.01e-16 71.2
Msa0797730 MtrunA17_Chr1g0195251 38.017 121 71 2 121 241 295 411 4.55e-14 72.0
Msa0797730 MtrunA17_Chr3g0107471 60.377 53 17 2 5 56 569 618 6.27e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0797730 AT5G67580.2 53.584 293 132 1 1 289 1 293 1.45e-75 233
Msa0797730 AT5G67580.1 53.584 293 132 1 1 289 1 293 1.45e-75 233
Msa0797730 AT1G49950.3 48.971 243 116 5 1 238 1 240 9.78e-71 221
Msa0797730 AT1G49950.1 48.971 243 116 5 1 238 1 240 9.78e-71 221
Msa0797730 AT1G49950.2 48.971 243 116 5 1 238 1 240 9.78e-71 221
Msa0797730 AT3G49850.1 51.186 295 132 5 1 289 1 289 2.89e-66 209
Msa0797730 AT3G49850.2 51.186 295 132 5 1 289 1 289 2.89e-66 209
Msa0797730 AT1G72740.2 33.798 287 167 5 1 284 1 267 1.03e-31 119
Msa0797730 AT1G72740.1 33.798 287 173 6 1 284 1 273 4.52e-30 115
Msa0797730 AT1G17520.4 36.500 200 110 3 1 187 1 196 1.36e-29 114
Msa0797730 AT1G17520.1 32.990 291 161 7 1 275 1 273 4.11e-29 112
Msa0797730 AT1G17520.3 36.816 201 109 4 1 187 1 197 6.80e-29 112
Msa0797730 AT1G17520.2 33.219 292 160 8 1 275 1 274 1.65e-28 111

Find 123 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTAAGCCTCTTTCAGTTTC+TGG 0.037607 5_3:+9952016 Msa0797730:CDS
TATATTCCTGGGAATGTATT+TGG 0.155401 5_3:-9954881 None:intergenic
ATGTGCAATTGAAGTTAATT+TGG 0.194499 5_3:+9950800 Msa0797730:five_prime_UTR
TAGAAACATTGCCAAATCTT+AGG 0.197424 5_3:-9955100 None:intergenic
GGCTTAGGAGCTGCAACTTC+TGG 0.214227 5_3:-9952001 None:intergenic
AATGCAGAAGACTTAATATT+TGG 0.225595 5_3:+9954547 Msa0797730:CDS
CTGTTCATGGATTGGTTTAT+AGG 0.229623 5_3:+9955165 Msa0797730:three_prime_UTR
CGCAAAATGGTGCTGAAATC+TGG 0.244024 5_3:-9951581 None:intergenic
TAACCTTGATATTTGTTCTT+TGG 0.249384 5_3:-9952053 None:intergenic
GAACCAGTTTAGTTTGATTC+AGG 0.257395 5_3:-9955247 None:intergenic
AGCATTCAAAATGGGCTAAA+AGG 0.270295 5_3:-9954631 None:intergenic
ACATAAATGTGACTGCAATA+TGG 0.284211 5_3:+9951876 Msa0797730:CDS
TTCTGGATTATATTGAACTA+TGG 0.296937 5_3:-9951984 None:intergenic
GTTTGAAAAGAGATCAATTC+AGG 0.318214 5_3:-9950762 None:intergenic
AATACATTCCCAGGAATATA+TGG 0.324845 5_3:+9954884 Msa0797730:three_prime_UTR
ATGAACAGCCCTACCTAGAT+AGG 0.334316 5_3:-9955150 None:intergenic
CTAGGAGAAAGCATTCAAAA+TGG 0.335895 5_3:-9954640 None:intergenic
CAGGTGAAGCCATTGAAGTT+TGG 0.341585 5_3:-9955228 None:intergenic
ATTTGAACGCATGCGCAAAA+TGG 0.355071 5_3:-9951594 None:intergenic
CATAAATGTGACTGCAATAT+GGG 0.356271 5_3:+9951877 Msa0797730:CDS
TGACAATCGAGTCGAATATA+AGG 0.364822 5_3:-9952594 None:intergenic
GAAAGGGTATAGGTGCGAAT+TGG 0.368255 5_3:-9950372 None:intergenic
TGAAGTTAATTTGGCTATTG+AGG 0.371174 5_3:+9950809 Msa0797730:five_prime_UTR
AAAGGGTATAGGTGCGAATT+GGG 0.374310 5_3:-9950371 None:intergenic
ATAATCTGAGCTGTGGTTGC+TGG 0.375315 5_3:+9950734 Msa0797730:five_prime_UTR
TCAAATACGGGGCTGGAAAA+TGG 0.375403 5_3:+9951540 Msa0797730:CDS
TCTGCAGTCCATTTCTGCTT+AGG 0.379164 5_3:-9951488 None:intergenic
GTTCCCTTACCATATATTCC+TGG 0.379926 5_3:-9954893 None:intergenic
TTTCATAATGCGCCCTATCT+AGG 0.381804 5_3:+9955137 Msa0797730:three_prime_UTR
AGAAACATTGCCAAATCTTA+GGG 0.386270 5_3:-9955099 None:intergenic
GAACTATGGCGGTCGAGGTT+GGG 0.406154 5_3:-9951970 None:intergenic
AGCAGCTGCAAAAGCAGTTG+CGG 0.409911 5_3:+9954413 Msa0797730:CDS
GACAGTAACTTTATGAGGTT+TGG 0.411444 5_3:-9953754 None:intergenic
CGCCATTGCTGCTTATATAG+AGG 0.411827 5_3:+9952648 Msa0797730:CDS
ATGCATTAAGTAATGTATCT+TGG 0.418671 5_3:-9954582 None:intergenic
ATGCTCTTCCTTGTTACTCC+TGG 0.423977 5_3:+9954272 Msa0797730:CDS
TGGGTGCTCCTAAGCAGAAA+TGG 0.425779 5_3:+9951480 Msa0797730:CDS
GAAGAGGCAGCTCTGAAAGC+TGG 0.428221 5_3:+9951512 Msa0797730:CDS
AGCTGCAAAAGCAGTTGCGG+AGG 0.430575 5_3:+9954416 Msa0797730:CDS
TTGTTGACAGTAACTTTATG+AGG 0.436494 5_3:-9953759 None:intergenic
TATCTAGGTAGGGCTGTTCA+TGG 0.446835 5_3:+9955152 Msa0797730:three_prime_UTR
TGGCTATTGAGGTCAATGTT+TGG 0.455593 5_3:+9950820 Msa0797730:five_prime_UTR
CCAGAAACTGAAAGAGGCTT+AGG 0.456807 5_3:-9952016 None:intergenic
AGGTAGGGCTGTTCATGGAT+TGG 0.462926 5_3:+9955157 Msa0797730:three_prime_UTR
CGACTCGATTGTCAAGTTGA+AGG 0.467379 5_3:+9952603 Msa0797730:CDS
GAAGCCATTGAAGTTTGGTT+CGG 0.467649 5_3:-9955223 None:intergenic
TGAACTATGGCGGTCGAGGT+TGG 0.475508 5_3:-9951971 None:intergenic
AAAGCTGGAGTAGTCAAATA+CGG 0.485337 5_3:+9951527 Msa0797730:CDS
GTCAACAAAACTGAAGCATA+TGG 0.488294 5_3:+9953774 Msa0797730:CDS
TTCCCTTACCATATATTCCT+GGG 0.493638 5_3:-9954892 None:intergenic
TAAGCTATGAACAGGACAAA+TGG 0.495183 5_3:+9951849 Msa0797730:intron
TGACTGCAATATGGGGATCC+AGG 0.496295 5_3:+9951885 Msa0797730:CDS
TGAATGGATCGGAGAATGAA+AGG 0.497750 5_3:-9950389 None:intergenic
GGCCGTGGACTTCTTCCAAT+GGG 0.500319 5_3:+9951461 Msa0797730:exon
AAGCCTCTTTCAGTTTCTGG+TGG 0.504900 5_3:+9952019 Msa0797730:CDS
CTTCCTTGTTACTCCTGGAA+GGG 0.505904 5_3:+9954277 Msa0797730:CDS
GAAATCTGGGTCTGTAAGAA+TGG 0.507475 5_3:-9951567 None:intergenic
GCGGCAATGTCAGAACCCTT+TGG 0.508392 5_3:-9952628 None:intergenic
TCTTCCTTGTTACTCCTGGA+AGG 0.509910 5_3:+9954276 Msa0797730:CDS
TTATGAGGTTTGGTGGAGAC+CGG 0.510215 5_3:-9953744 None:intergenic
ATTCCCAGGAATATATGGTA+AGG 0.510987 5_3:+9954889 Msa0797730:three_prime_UTR
GACAGGTAAATCATAAGTAC+AGG 0.511866 5_3:+9954211 Msa0797730:intron
AGTAACTTTATGAGGTTTGG+TGG 0.512273 5_3:-9953751 None:intergenic
TAGGAGAAAGCATTCAAAAT+GGG 0.512658 5_3:-9954639 None:intergenic
AGTTAACCAAATACATTCCC+AGG 0.513886 5_3:+9954875 Msa0797730:three_prime_UTR
TGCTGTCTCAGCCTCAGCAA+TGG 0.514472 5_3:-9954448 None:intergenic
GGCTGAGACAGCAGCAAGGG+AGG 0.514772 5_3:+9954458 Msa0797730:CDS
TTAAGTAATGTATCTTGGTA+AGG 0.519543 5_3:-9954577 None:intergenic
ATAATGCGCCCTATCTAGGT+AGG 0.529910 5_3:+9955141 Msa0797730:three_prime_UTR
ATCGGAGAATGAAAGGGTAT+AGG 0.531059 5_3:-9950382 None:intergenic
AAATTAAAGAAGAAATTGAA+TGG 0.532572 5_3:-9950405 None:intergenic
TGGCGGTCGAGGTTGGGTGG+TGG 0.532625 5_3:-9951964 None:intergenic
GGAGTAGTCAAATACGGGGC+TGG 0.532847 5_3:+9951533 Msa0797730:CDS
CTTCCAAAGAACAAATATCA+AGG 0.532967 5_3:+9952050 Msa0797730:CDS
AAGCTGGAGTAGTCAAATAC+GGG 0.536563 5_3:+9951528 Msa0797730:CDS
AAAGAAGAAATTGAATGGAT+CGG 0.537721 5_3:-9950400 None:intergenic
GCAAAATGGTGCTGAAATCT+GGG 0.539501 5_3:-9951580 None:intergenic
ATATTGAACTATGGCGGTCG+AGG 0.543535 5_3:-9951975 None:intergenic
CCTTGTTACTCCTGGAAGGG+AGG 0.547136 5_3:+9954280 Msa0797730:CDS
GGCAGAAGCTGCCATTGCTG+AGG 0.547830 5_3:+9954437 Msa0797730:CDS
AAAACAATACTGTCATAAGA+AGG 0.548234 5_3:+9951440 Msa0797730:five_prime_UTR
AAATCCGAACCAAACTTCAA+TGG 0.548942 5_3:+9955219 Msa0797730:three_prime_UTR
GAATGGATCGGAGAATGAAA+GGG 0.551647 5_3:-9950388 None:intergenic
AAATATCTTTCGTATTCCCA+CGG 0.558769 5_3:+9954980 Msa0797730:three_prime_UTR
TACCTCTATATAAGCAGCAA+TGG 0.560953 5_3:-9952650 None:intergenic
TGAGGCTGAGACAGCAGCAA+GGG 0.562956 5_3:+9954455 Msa0797730:CDS
CTATGGCGGTCGAGGTTGGG+TGG 0.567809 5_3:-9951967 None:intergenic
TAGGGCGCATTATGAAAAGA+TGG 0.567874 5_3:-9955131 None:intergenic
TTCTGCTTAGGAGCACCCAT+TGG 0.569658 5_3:-9951476 None:intergenic
TACCTCAATAGGATCAATAC+CGG 0.570066 5_3:+9953725 Msa0797730:intron
GAAATGGACTGCAGAAGAAG+AGG 0.574527 5_3:+9951496 Msa0797730:CDS
ATTCCACCAGAAACTGAAAG+AGG 0.576366 5_3:-9952022 None:intergenic
TGTCAAGTTGAAGGAGCCAA+AGG 0.577322 5_3:+9952612 Msa0797730:CDS
AGGCCGTGGACTTCTTCCAA+TGG 0.581127 5_3:+9951460 Msa0797730:exon
GCGTTCAAATGTAGATCTCA+AGG 0.582023 5_3:+9951607 Msa0797730:CDS
CTCTATATAAGCAGCAATGG+CGG 0.582614 5_3:-9952647 None:intergenic
GGGAGAATTTACTTACGTGC+GGG 0.584352 5_3:-9950351 None:intergenic
GTCAAGTTGAAGGAGCCAAA+GGG 0.586146 5_3:+9952613 Msa0797730:CDS
GAGGGGTGTGACAGCTCAAG+AGG 0.591616 5_3:+9954383 Msa0797730:CDS
CCTCCCTTCCAGGAGTAACA+AGG 0.596501 5_3:-9954280 None:intergenic
GTAGTACTAGAGAAAACCTC+GGG 0.598855 5_3:-9951407 None:intergenic
TTCCCAGGAATATATGGTAA+GGG 0.608185 5_3:+9954890 Msa0797730:three_prime_UTR
TAATGCGCCCTATCTAGGTA+GGG 0.611369 5_3:+9955142 Msa0797730:three_prime_UTR
CTGAGGCTGAGACAGCAGCA+AGG 0.616768 5_3:+9954454 Msa0797730:CDS
AACAGCTGAAGCTGAAGCAG+AGG 0.618779 5_3:+9954485 Msa0797730:CDS
GTTTGCAAAAGCAGCAACGA+AGG 0.621698 5_3:+9954518 Msa0797730:CDS
TGAACAGCCCTACCTAGATA+GGG 0.624485 5_3:-9955149 None:intergenic
GAAACATTGCCAAATCTTAG+GGG 0.627354 5_3:-9955098 None:intergenic
CTGAAGCATATGGTGGCAAG+CGG 0.627992 5_3:+9953784 Msa0797730:CDS
GAAATAATACTGCAATGCAA+AGG 0.631678 5_3:+9955028 Msa0797730:three_prime_UTR
AATATGGGGATCCAGGCAGA+AGG 0.633799 5_3:+9951892 Msa0797730:CDS
TGGATTATATTGAACTATGG+CGG 0.635820 5_3:-9951981 None:intergenic
TGGGAGAATTTACTTACGTG+CGG 0.636450 5_3:-9950352 None:intergenic
GGCAAGCGGCAAATTAGTGA+AGG 0.638026 5_3:+9953798 Msa0797730:CDS
GCTATGAACAGGACAAATGG+AGG 0.639785 5_3:+9951852 Msa0797730:intron
ATAAATGTGACTGCAATATG+GGG 0.648699 5_3:+9951878 Msa0797730:CDS
TGTAGTACTAGAGAAAACCT+CGG 0.653528 5_3:-9951408 None:intergenic
CACCCATTGGAAGAAGTCCA+CGG 0.659202 5_3:-9951463 None:intergenic
CAGAAGAAGACTGCATCCCG+AGG 0.670596 5_3:+9951391 Msa0797730:five_prime_UTR
AACAAAACTGAAGCATATGG+TGG 0.677408 5_3:+9953777 Msa0797730:CDS
ATACTGTCATAAGAAGGCCG+TGG 0.682217 5_3:+9951446 Msa0797730:five_prime_UTR
AGCTGGAGTAGTCAAATACG+GGG 0.718064 5_3:+9951529 Msa0797730:CDS
CAGACAAATAATCTGAGCTG+TGG 0.721649 5_3:+9950727 Msa0797730:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTAACTTTATAAAAAATTA+GGG - chr5_3:9954676-9954695 None:intergenic 10.0%
!! AGTTAACTTTATAAAAAATT+AGG - chr5_3:9954677-9954696 None:intergenic 10.0%
!! ATTAGCATTATAAAAAATTA+GGG - chr5_3:9954825-9954844 None:intergenic 10.0%
!! AATTAGCATTATAAAAAATT+AGG - chr5_3:9954826-9954845 None:intergenic 10.0%
!! AAATTAAAGAAGAAATTGAA+TGG - chr5_3:9950408-9950427 None:intergenic 15.0%
!!! AAAACAAAATTTGTTAATGT+TGG + chr5_3:9950529-9950548 Msa0797730:intron 15.0%
!!! TTAAGTCTTATAATTATTGA+AGG + chr5_3:9951321-9951340 Msa0797730:intron 15.0%
!! AGTAAAATTATTGTTATGTT+AGG + chr5_3:9951676-9951695 Msa0797730:intron 15.0%
!!! CATTAATTCATTTAAAACTT+TGG - chr5_3:9952251-9952270 None:intergenic 15.0%
!!! TAAAAGTATTTTAAACTCTT+TGG + chr5_3:9952911-9952930 Msa0797730:intron 15.0%
!! ATAAACAACATATAAATCAA+TGG - chr5_3:9953397-9953416 None:intergenic 15.0%
!! AGTAATATAGGTTTATTAAA+AGG - chr5_3:9954120-9954139 None:intergenic 15.0%
!! TATTTATCTTACAGTAATAT+AGG - chr5_3:9954132-9954151 None:intergenic 15.0%
!! AAGTAATTTAATATGATACT+TGG + chr5_3:9954158-9954177 Msa0797730:intron 15.0%
!!! AATCATTTTTTTTTGTAGCA+AGG + chr5_3:9950612-9950631 Msa0797730:intron 20.0%
!! TATGAATTGTATTGTTTCAA+TGG - chr5_3:9950656-9950675 None:intergenic 20.0%
!! TTGTGAAAAATCATCAAATT+AGG - chr5_3:9950689-9950708 None:intergenic 20.0%
!!! ATAACAATTTTTGGTGTATT+GGG - chr5_3:9950954-9950973 None:intergenic 20.0%
!!! AATAACAATTTTTGGTGTAT+TGG - chr5_3:9950955-9950974 None:intergenic 20.0%
!!! GTAAAAAGTTATAACTTTTG+GGG - chr5_3:9951005-9951024 None:intergenic 20.0%
!!! CGTAAAAAGTTATAACTTTT+GGG - chr5_3:9951006-9951025 None:intergenic 20.0%
!! TCCAATTATGAATCTAAATA+GGG - chr5_3:9951029-9951048 None:intergenic 20.0%
!! ATCCAATTATGAATCTAAAT+AGG - chr5_3:9951030-9951049 None:intergenic 20.0%
!! TGGTATATGATAGAATATTA+TGG + chr5_3:9951138-9951157 Msa0797730:intron 20.0%
!! GTTGTTTAGATTCAAAATTA+TGG + chr5_3:9951215-9951234 Msa0797730:intron 20.0%
!! TCATATTAAACTATATACCT+AGG + chr5_3:9951799-9951818 Msa0797730:intron 20.0%
!! TTACACTTTATAGAACTAAA+TGG + chr5_3:9952099-9952118 Msa0797730:intron 20.0%
!!! AAACATTTTGTAGTTGTAAT+TGG - chr5_3:9952436-9952455 None:intergenic 20.0%
!!! TCTTTTTAATAATGACAGAT+TGG + chr5_3:9952567-9952586 Msa0797730:intron 20.0%
!! GATTATATATACCATTAATG+AGG - chr5_3:9952691-9952710 None:intergenic 20.0%
!! GAAAAACTTAGATATTAATG+AGG + chr5_3:9953259-9953278 Msa0797730:intron 20.0%
!!! AAAAAACTGCTCTAATATTT+TGG - chr5_3:9953481-9953500 None:intergenic 20.0%
!! ATATCCAATAAATTATTCAG+TGG - chr5_3:9953922-9953941 None:intergenic 20.0%
!! TTATTGGATATTGAATGTTA+TGG + chr5_3:9953931-9953950 Msa0797730:intron 20.0%
!! ATTGGTAAAGAGAAATTAAT+TGG + chr5_3:9953988-9954007 Msa0797730:intron 20.0%
!! TGAATACAAAAAATCTGTTA+TGG + chr5_3:9954026-9954045 Msa0797730:intron 20.0%
!! TATTACTGTAAGATAAATAC+TGG + chr5_3:9954133-9954152 Msa0797730:intron 20.0%
!!! TTTTAACACAATTACAAACA+TGG - chr5_3:9954926-9954945 None:intergenic 20.0%
! AAAGAAGAAATTGAATGGAT+CGG - chr5_3:9950403-9950422 None:intergenic 25.0%
!!! ATTTCTTCTTTAATTTTCCC+AGG + chr5_3:9950412-9950431 Msa0797730:five_prime_UTR 25.0%
!!! ACAAAATTTGTTAATGTTGG+TGG + chr5_3:9950532-9950551 Msa0797730:intron 25.0%
!! ATTGATCTCTTTTCAAACAT+TGG + chr5_3:9950767-9950786 Msa0797730:five_prime_UTR 25.0%
! ATGTGCAATTGAAGTTAATT+TGG + chr5_3:9950800-9950819 Msa0797730:five_prime_UTR 25.0%
!! GGGACAAAAATAACAATTTT+TGG - chr5_3:9950963-9950982 None:intergenic 25.0%
!!! GTTATTTTTGTCCCAAAAAA+TGG + chr5_3:9950969-9950988 Msa0797730:intron 25.0%
!! GCGTAAAAAGTTATAACTTT+TGG - chr5_3:9951007-9951026 None:intergenic 25.0%
!! AGATTTAGAGTTTAATGAGT+TGG + chr5_3:9951104-9951123 Msa0797730:intron 25.0%
!! ATGAGTTGGATAGAAATATA+TGG + chr5_3:9951118-9951137 Msa0797730:intron 25.0%
! AAAACAATACTGTCATAAGA+AGG + chr5_3:9951440-9951459 Msa0797730:five_prime_UTR 25.0%
!!! TTTGTTTTAAATGTTCTAGC+AGG + chr5_3:9951635-9951654 Msa0797730:intron 25.0%
! TAACTGTTTACTTTATCACA+AGG + chr5_3:9951735-9951754 Msa0797730:intron 25.0%
!!! TGGTGGTTATTTTCATTTTT+CGG - chr5_3:9951950-9951969 None:intergenic 25.0%
! TTCTGGATTATATTGAACTA+TGG - chr5_3:9951987-9952006 None:intergenic 25.0%
! TAACCTTGATATTTGTTCTT+TGG - chr5_3:9952056-9952075 None:intergenic 25.0%
! TATAATAGTTATCAGCTCTA+AGG + chr5_3:9952200-9952219 Msa0797730:intron 25.0%
!! AAACAAGTTGCAAACAATTT+TGG + chr5_3:9952275-9952294 Msa0797730:intron 25.0%
! TATGAAGGAATTGGAATAAA+TGG - chr5_3:9952814-9952833 None:intergenic 25.0%
!! GTTTCTCATATAGTTTTTCT+AGG - chr5_3:9953233-9953252 None:intergenic 25.0%
! TATTAATGAGGATCCAAATA+AGG + chr5_3:9953271-9953290 Msa0797730:intron 25.0%
! GTTCTATCATAAACCTTATT+TGG - chr5_3:9953287-9953306 None:intergenic 25.0%
! AGTTATTAGCAGAAAATGAT+TGG + chr5_3:9953970-9953989 Msa0797730:intron 25.0%
!!! CATCAATTTGAGATTTTGAA+AGG - chr5_3:9954347-9954366 None:intergenic 25.0%
!!! ATGTTGAGCTTTTAAAAATG+AGG + chr5_3:9954364-9954383 Msa0797730:CDS 25.0%
!!! TGTTGAGCTTTTAAAAATGA+GGG + chr5_3:9954365-9954384 Msa0797730:CDS 25.0%
! AATGCAGAAGACTTAATATT+TGG + chr5_3:9954547-9954566 Msa0797730:CDS 25.0%
! TTAAGTAATGTATCTTGGTA+AGG - chr5_3:9954580-9954599 None:intergenic 25.0%
! ATGCATTAAGTAATGTATCT+TGG - chr5_3:9954585-9954604 None:intergenic 25.0%
! GAACTAAACTACAAAAAAGT+TGG + chr5_3:9955194-9955213 Msa0797730:three_prime_UTR 25.0%
AAAATGATGAATACTGACCT+GGG - chr5_3:9950432-9950451 None:intergenic 30.0%
AAAAATGATGAATACTGACC+TGG - chr5_3:9950433-9950452 None:intergenic 30.0%
GTTTGAAAAGAGATCAATTC+AGG - chr5_3:9950765-9950784 None:intergenic 30.0%
! TGAAGTTAATTTGGCTATTG+AGG + chr5_3:9950809-9950828 Msa0797730:five_prime_UTR 30.0%
! TCCCAAAAAATGGTGATTTT+TGG + chr5_3:9950979-9950998 Msa0797730:intron 30.0%
!!! GCCAAAAATCACCATTTTTT+GGG - chr5_3:9950983-9951002 None:intergenic 30.0%
GCCCTATTTAGATTCATAAT+TGG + chr5_3:9951025-9951044 Msa0797730:intron 30.0%
! GTTTCTCTTACAGTTTTTCT+AGG - chr5_3:9951075-9951094 None:intergenic 30.0%
! TTCCTATACTGTTGCAATTT+TGG - chr5_3:9951283-9951302 None:intergenic 30.0%
AAATTGCAACAGTATAGGAA+CGG + chr5_3:9951283-9951302 Msa0797730:intron 30.0%
! CAATAAAGTCAGACATTTTG+TGG + chr5_3:9951359-9951378 Msa0797730:five_prime_UTR 30.0%
TAAATGTTCTAGCAGGTTAT+AGG + chr5_3:9951642-9951661 Msa0797730:intron 30.0%
AGTTATATAGTAACACACCT+AGG - chr5_3:9951819-9951838 None:intergenic 30.0%
ACATAAATGTGACTGCAATA+TGG + chr5_3:9951876-9951895 Msa0797730:CDS 30.0%
CATAAATGTGACTGCAATAT+GGG + chr5_3:9951877-9951896 Msa0797730:CDS 30.0%
ATAAATGTGACTGCAATATG+GGG + chr5_3:9951878-9951897 Msa0797730:CDS 30.0%
!! TGGTTATTTTCATTTTTCGG+GGG - chr5_3:9951947-9951966 None:intergenic 30.0%
!! GTGGTTATTTTCATTTTTCG+GGG - chr5_3:9951948-9951967 None:intergenic 30.0%
!! GGTGGTTATTTTCATTTTTC+GGG - chr5_3:9951949-9951968 None:intergenic 30.0%
TGGATTATATTGAACTATGG+CGG - chr5_3:9951984-9952003 None:intergenic 30.0%
CTTCCAAAGAACAAATATCA+AGG + chr5_3:9952050-9952069 Msa0797730:CDS 30.0%
! CATTTAAAACTTTGGTATGC+CGG - chr5_3:9952243-9952262 None:intergenic 30.0%
TCAGAAAACAATATACCTTG+TGG - chr5_3:9952315-9952334 None:intergenic 30.0%
! TGATGATTCTTTTCTAAGCA+TGG + chr5_3:9952359-9952378 Msa0797730:intron 30.0%
AAATTCACCACAATCTTAAG+GGG - chr5_3:9952500-9952519 None:intergenic 30.0%
CAAATTCACCACAATCTTAA+GGG - chr5_3:9952501-9952520 None:intergenic 30.0%
!!! TGGCAATGTTTTTTCAATGA+TGG + chr5_3:9952535-9952554 Msa0797730:intron 30.0%
ACTGAGTGAGGAAAAAAATT+TGG - chr5_3:9952737-9952756 None:intergenic 30.0%
TCAAACTGTTATGAAGGAAT+TGG - chr5_3:9952823-9952842 None:intergenic 30.0%
TATAGGTCAAACTGTTATGA+AGG - chr5_3:9952829-9952848 None:intergenic 30.0%
TAAAACAAGCATAGCAAAGA+TGG + chr5_3:9953004-9953023 Msa0797730:intron 30.0%
AAAACAAGCATAGCAAAGAT+GGG + chr5_3:9953005-9953024 Msa0797730:intron 30.0%
AAATGACAACATTAGAGAGT+TGG + chr5_3:9953073-9953092 Msa0797730:intron 30.0%
AATGACAACATTAGAGAGTT+GGG + chr5_3:9953074-9953093 Msa0797730:intron 30.0%
ACCTACATTAGAAATGATAG+TGG + chr5_3:9953102-9953121 Msa0797730:intron 30.0%
TCCACTATCATTTCTAATGT+AGG - chr5_3:9953106-9953125 None:intergenic 30.0%
!! TTAGAAATGATAGTGGAAAC+AGG + chr5_3:9953109-9953128 Msa0797730:intron 30.0%
ACATATAAATCAATGGACCT+AGG - chr5_3:9953390-9953409 None:intergenic 30.0%
GTTAGAACTAGTTGAAATTG+TGG - chr5_3:9953427-9953446 None:intergenic 30.0%
!! ACTAGTTCTAACATGTAACT+CGG + chr5_3:9953435-9953454 Msa0797730:intron 30.0%
!!! ATATTTTGGTACCAGAAGAA+TGG - chr5_3:9953467-9953486 None:intergenic 30.0%
!!! AGAGCAGTTTTTTCATTTGA+TGG + chr5_3:9953488-9953507 Msa0797730:intron 30.0%
CTGAAATTGTTTACCTCAAT+AGG + chr5_3:9953714-9953733 Msa0797730:intron 30.0%
TTGTTGACAGTAACTTTATG+AGG - chr5_3:9953762-9953781 None:intergenic 30.0%
CTGTCCACTGAATAATTTAT+TGG + chr5_3:9953915-9953934 Msa0797730:intron 30.0%
CTTATGATTTACCTGTCATT+AGG - chr5_3:9954208-9954227 None:intergenic 30.0%
!! TTGAGATTTTGAAAGGATGT+TGG - chr5_3:9954340-9954359 None:intergenic 30.0%
!! GTTGAGCTTTTAAAAATGAG+GGG + chr5_3:9954366-9954385 Msa0797730:CDS 30.0%
!! TAGGAGAAAGCATTCAAAAT+GGG - chr5_3:9954642-9954661 None:intergenic 30.0%
TATATTCCTGGGAATGTATT+TGG - chr5_3:9954884-9954903 None:intergenic 30.0%
AATACATTCCCAGGAATATA+TGG + chr5_3:9954884-9954903 Msa0797730:three_prime_UTR 30.0%
AAATATCTTTCGTATTCCCA+CGG + chr5_3:9954980-9954999 Msa0797730:three_prime_UTR 30.0%
GAAATAATACTGCAATGCAA+AGG + chr5_3:9955028-9955047 Msa0797730:three_prime_UTR 30.0%
AACAAAAATCCCCTAAGATT+TGG + chr5_3:9955089-9955108 Msa0797730:three_prime_UTR 30.0%
AGAAACATTGCCAAATCTTA+GGG - chr5_3:9955102-9955121 None:intergenic 30.0%
TAGAAACATTGCCAAATCTT+AGG - chr5_3:9955103-9955122 None:intergenic 30.0%
!!! CTTTCGTCTTTTGTTTTTCG+TGG - chr5_3:9950262-9950281 None:intergenic 35.0%
GATTATTTGTCTGCAGGAAA+AGG - chr5_3:9950720-9950739 None:intergenic 35.0%
!!! GGCCAAAAATCACCATTTTT+TGG - chr5_3:9950984-9951003 None:intergenic 35.0%
GAATCTAAACAACAACAACC+AGG - chr5_3:9951208-9951227 None:intergenic 35.0%
GACCAAAATTGCAACAGTAT+AGG + chr5_3:9951278-9951297 Msa0797730:intron 35.0%
AATTGCAACAGTATAGGAAC+GGG + chr5_3:9951284-9951303 Msa0797730:intron 35.0%
TATTGAAGGATGACGTTTGT+AGG + chr5_3:9951335-9951354 Msa0797730:intron 35.0%
TGTAGTACTAGAGAAAACCT+CGG - chr5_3:9951411-9951430 None:intergenic 35.0%
AAAGCTGGAGTAGTCAAATA+CGG + chr5_3:9951527-9951546 Msa0797730:CDS 35.0%
! ATGTGCTTTAAGCTATGAAC+AGG + chr5_3:9951841-9951860 Msa0797730:intron 35.0%
TAAGCTATGAACAGGACAAA+TGG + chr5_3:9951849-9951868 Msa0797730:intron 35.0%
!!! TTATTTTCATTTTTCGGGGG+TGG - chr5_3:9951944-9951963 None:intergenic 35.0%
ACTAAATGGTCTGTGATTCT+TGG + chr5_3:9952113-9952132 Msa0797730:intron 35.0%
! GCTATAATTTGTGTACCACA+AGG + chr5_3:9952297-9952316 Msa0797730:intron 35.0%
ACAATATCCCCTTAAGATTG+TGG + chr5_3:9952490-9952509 Msa0797730:intron 35.0%
GCAAATTCACCACAATCTTA+AGG - chr5_3:9952502-9952521 None:intergenic 35.0%
AATTTGCAACGTCAATCATG+TGG + chr5_3:9952515-9952534 Msa0797730:intron 35.0%
TGACAATCGAGTCGAATATA+AGG - chr5_3:9952597-9952616 None:intergenic 35.0%
TACCTCTATATAAGCAGCAA+TGG - chr5_3:9952653-9952672 None:intergenic 35.0%
TACCTTGATTGCCTCATTAA+TGG + chr5_3:9952677-9952696 Msa0797730:intron 35.0%
TACCATTAATGAGGCAATCA+AGG - chr5_3:9952682-9952701 None:intergenic 35.0%
! TCATTTGAGATAGGATAGTG+TGG - chr5_3:9952787-9952806 None:intergenic 35.0%
! AATGGTCTGTCATTTGAGAT+AGG - chr5_3:9952796-9952815 None:intergenic 35.0%
GGGAGACTGAATAAAACTAT+AGG - chr5_3:9952846-9952865 None:intergenic 35.0%
! AGTCTCCCTCTAGAAAATAT+CGG + chr5_3:9952858-9952877 Msa0797730:intron 35.0%
AAGAACCAACACGAGAATAA+CGG + chr5_3:9952950-9952969 Msa0797730:intron 35.0%
AAACAAGCATAGCAAAGATG+GGG + chr5_3:9953006-9953025 Msa0797730:intron 35.0%
GTGGTAAGACTAGAAAAGAT+AGG + chr5_3:9953045-9953064 Msa0797730:intron 35.0%
ATGACAACATTAGAGAGTTG+GGG + chr5_3:9953075-9953094 Msa0797730:intron 35.0%
TCTCCTTATACAGAATCTAC+GGG - chr5_3:9953165-9953184 None:intergenic 35.0%
CTCTCCTTATACAGAATCTA+CGG - chr5_3:9953166-9953185 None:intergenic 35.0%
TATAAGGAGAGTAGATCAGA+TGG + chr5_3:9953175-9953194 Msa0797730:intron 35.0%
!! CTAGTTCTAACATGTAACTC+GGG + chr5_3:9953436-9953455 Msa0797730:intron 35.0%
!! TAGTTCTAACATGTAACTCG+GGG + chr5_3:9953437-9953456 Msa0797730:intron 35.0%
TACCTCAATAGGATCAATAC+CGG + chr5_3:9953725-9953744 Msa0797730:intron 35.0%
AGTAACTTTATGAGGTTTGG+TGG - chr5_3:9953754-9953773 None:intergenic 35.0%
GACAGTAACTTTATGAGGTT+TGG - chr5_3:9953757-9953776 None:intergenic 35.0%
GTCAACAAAACTGAAGCATA+TGG + chr5_3:9953774-9953793 Msa0797730:CDS 35.0%
AACAAAACTGAAGCATATGG+TGG + chr5_3:9953777-9953796 Msa0797730:CDS 35.0%
TACTCTTCGTTACTGAAACT+TGG + chr5_3:9953827-9953846 Msa0797730:intron 35.0%
GTTACTGAAACTTGGTTTCT+TGG + chr5_3:9953835-9953854 Msa0797730:intron 35.0%
AAACTTGGTTTCTTGGAACT+TGG + chr5_3:9953842-9953861 Msa0797730:intron 35.0%
!! CAGGAAAAGATACTGCTTTT+TGG - chr5_3:9953871-9953890 None:intergenic 35.0%
! TCTTTTCCTGCAAACTTTTG+TGG + chr5_3:9953881-9953900 Msa0797730:intron 35.0%
TGTTATGGTTACACTGTTAC+TGG + chr5_3:9953946-9953965 Msa0797730:intron 35.0%
TAGTGGGAGTGAAATTCTAT+TGG + chr5_3:9954081-9954100 Msa0797730:intron 35.0%
GACAGGTAAATCATAAGTAC+AGG + chr5_3:9954211-9954230 Msa0797730:intron 35.0%
!! TCTGCTTTTGGAGAATCTTT+TGG - chr5_3:9954306-9954325 None:intergenic 35.0%
!! AGCATTCAAAATGGGCTAAA+AGG - chr5_3:9954634-9954653 None:intergenic 35.0%
!! CTAGGAGAAAGCATTCAAAA+TGG - chr5_3:9954643-9954662 None:intergenic 35.0%
! TTTTGAATGCTTTCTCCTAG+TGG + chr5_3:9954643-9954662 Msa0797730:three_prime_UTR 35.0%
AATTAGGGAAAGTAACCACT+AGG - chr5_3:9954661-9954680 None:intergenic 35.0%
ATGCATTGAGAAACGTTTCT+AGG - chr5_3:9954734-9954753 None:intergenic 35.0%
!! TAGGAGAAAGCATTCAAGAT+GGG - chr5_3:9954791-9954810 None:intergenic 35.0%
AATTAGGGAAAGTAACCACT+AGG - chr5_3:9954661-9954680 None:intergenic 35.0%
AGTTAACCAAATACATTCCC+AGG + chr5_3:9954875-9954894 Msa0797730:three_prime_UTR 35.0%
ATTCCCAGGAATATATGGTA+AGG + chr5_3:9954889-9954908 Msa0797730:three_prime_UTR 35.0%
TTCCCAGGAATATATGGTAA+GGG + chr5_3:9954890-9954909 Msa0797730:three_prime_UTR 35.0%
TTCCCTTACCATATATTCCT+GGG - chr5_3:9954895-9954914 None:intergenic 35.0%
CCATAGAGAATAAAAACCGT+GGG - chr5_3:9954999-9955018 None:intergenic 35.0%
TCCATAGAGAATAAAAACCG+TGG - chr5_3:9955000-9955019 None:intergenic 35.0%
! ACGGTTTTTATTCTCTATGG+AGG + chr5_3:9954999-9955018 Msa0797730:three_prime_UTR 35.0%
! CGGTTTTTATTCTCTATGGA+GGG + chr5_3:9955000-9955019 Msa0797730:three_prime_UTR 35.0%
! GGTTTTTATTCTCTATGGAG+GGG + chr5_3:9955001-9955020 Msa0797730:three_prime_UTR 35.0%
! GTTTTTATTCTCTATGGAGG+GGG + chr5_3:9955002-9955021 Msa0797730:three_prime_UTR 35.0%
GAAACATTGCCAAATCTTAG+GGG - chr5_3:9955101-9955120 None:intergenic 35.0%
!! CTGTTCATGGATTGGTTTAT+AGG + chr5_3:9955165-9955184 Msa0797730:three_prime_UTR 35.0%
AAATCCGAACCAAACTTCAA+TGG + chr5_3:9955219-9955238 Msa0797730:three_prime_UTR 35.0%
!!! CGTCTTTTGTTTTTCGTGGA+AGG - chr5_3:9950258-9950277 None:intergenic 40.0%
TGGGAGAATTTACTTACGTG+CGG - chr5_3:9950355-9950374 None:intergenic 40.0%
! AAAGGGTATAGGTGCGAATT+GGG - chr5_3:9950374-9950393 None:intergenic 40.0%
! ATCGGAGAATGAAAGGGTAT+AGG - chr5_3:9950385-9950404 None:intergenic 40.0%
GAATGGATCGGAGAATGAAA+GGG - chr5_3:9950391-9950410 None:intergenic 40.0%
TGAATGGATCGGAGAATGAA+AGG - chr5_3:9950392-9950411 None:intergenic 40.0%
AGCTCAGATTATTTGTCTGC+AGG - chr5_3:9950726-9950745 None:intergenic 40.0%
CAGACAAATAATCTGAGCTG+TGG + chr5_3:9950727-9950746 Msa0797730:intron 40.0%
TGGCTATTGAGGTCAATGTT+TGG + chr5_3:9950820-9950839 Msa0797730:five_prime_UTR 40.0%
TGCAACAATGTGCGAAATTG+AGG - chr5_3:9950922-9950941 None:intergenic 40.0%
ATTGCAACAGTATAGGAACG+GGG + chr5_3:9951285-9951304 Msa0797730:intron 40.0%
GTAGTACTAGAGAAAACCTC+GGG - chr5_3:9951410-9951429 None:intergenic 40.0%
AAGCTGGAGTAGTCAAATAC+GGG + chr5_3:9951528-9951547 Msa0797730:CDS 40.0%
GAAATCTGGGTCTGTAAGAA+TGG - chr5_3:9951570-9951589 None:intergenic 40.0%
! GCAAAATGGTGCTGAAATCT+GGG - chr5_3:9951583-9951602 None:intergenic 40.0%
ATTTGAACGCATGCGCAAAA+TGG - chr5_3:9951597-9951616 None:intergenic 40.0%
GCGTTCAAATGTAGATCTCA+AGG + chr5_3:9951607-9951626 Msa0797730:CDS 40.0%
ATTCCACCAGAAACTGAAAG+AGG - chr5_3:9952025-9952044 None:intergenic 40.0%
AATGGTCTGTGATTCTTGGT+TGG + chr5_3:9952117-9952136 Msa0797730:intron 40.0%
ACACGCACAAACTCACATAT+CGG + chr5_3:9952408-9952427 Msa0797730:intron 40.0%
CTCTATATAAGCAGCAATGG+CGG - chr5_3:9952650-9952669 None:intergenic 40.0%
! GCTGACCGATATTTTCTAGA+GGG - chr5_3:9952866-9952885 None:intergenic 40.0%
TTGTAAACTTGATCGCAAGC+AGG - chr5_3:9952888-9952907 None:intergenic 40.0%
!! TCGTGTTGGTTCTTATACAG+AGG - chr5_3:9952944-9952963 None:intergenic 40.0%
ACATTCCGTTATTCTCGTGT+TGG - chr5_3:9952958-9952977 None:intergenic 40.0%
! ACACGAGAATAACGGAATGT+TGG + chr5_3:9952958-9952977 Msa0797730:intron 40.0%
! CACGAGAATAACGGAATGTT+GGG + chr5_3:9952959-9952978 Msa0797730:intron 40.0%
AGACCCGTAGATTCTGTATA+AGG + chr5_3:9953159-9953178 Msa0797730:intron 40.0%
! TAAGGCTTGATGGTTGTTGT+TGG + chr5_3:9953352-9953371 Msa0797730:intron 40.0%
GTTGGAAATGTTTCTCTCCT+AGG + chr5_3:9953370-9953389 Msa0797730:intron 40.0%
! CTTAACTTTTTGCCTTCCTG+TGG + chr5_3:9953566-9953585 Msa0797730:intron 40.0%
ATATGGGCATTCTCTGTAGT+GGG + chr5_3:9954065-9954084 Msa0797730:intron 40.0%
GTCATTAGGTATGTCAGACT+AGG - chr5_3:9954194-9954213 None:intergenic 40.0%
AGTCTGACATACCTAATGAC+AGG + chr5_3:9954194-9954213 Msa0797730:intron 40.0%
!!! GGAAGAGCATCTTCTTTTCT+CGG - chr5_3:9954262-9954281 None:intergenic 40.0%
! GCATCAGTTTTCTCTGCTTT+TGG - chr5_3:9954318-9954337 None:intergenic 40.0%
!! AGCATTCAAGATGGGCTAAA+AGG - chr5_3:9954783-9954802 None:intergenic 40.0%
!! CTAGGAGAAAGCATTCAAGA+TGG - chr5_3:9954792-9954811 None:intergenic 40.0%
TCTTGAATGCTTTCTCCTAG+TGG + chr5_3:9954792-9954811 Msa0797730:intron 40.0%
GTTCCCTTACCATATATTCC+TGG - chr5_3:9954896-9954915 None:intergenic 40.0%
! CCCACGGTTTTTATTCTCTA+TGG + chr5_3:9954996-9955015 Msa0797730:three_prime_UTR 40.0%
TAGGGCGCATTATGAAAAGA+TGG - chr5_3:9955134-9955153 None:intergenic 40.0%
TTTCATAATGCGCCCTATCT+AGG + chr5_3:9955137-9955156 Msa0797730:three_prime_UTR 40.0%
GAAGCCATTGAAGTTTGGTT+CGG - chr5_3:9955226-9955245 None:intergenic 40.0%
GGGAGAATTTACTTACGTGC+GGG - chr5_3:9950354-9950373 None:intergenic 45.0%
! GAAAGGGTATAGGTGCGAAT+TGG - chr5_3:9950375-9950394 None:intergenic 45.0%
ATAATCTGAGCTGTGGTTGC+TGG + chr5_3:9950734-9950753 Msa0797730:five_prime_UTR 45.0%
!! ACTAAGTGGGATTGGCTTCA+TGG - chr5_3:9951176-9951195 None:intergenic 45.0%
ATGAAGCCAATCCCACTTAG+TGG + chr5_3:9951175-9951194 Msa0797730:intron 45.0%
TGAAGCCAATCCCACTTAGT+GGG + chr5_3:9951176-9951195 Msa0797730:intron 45.0%
CTTATCCCACTAAGTGGGAT+TGG - chr5_3:9951184-9951203 None:intergenic 45.0%
CAGGACTTATCCCACTAAGT+GGG - chr5_3:9951189-9951208 None:intergenic 45.0%
TTGCAACAGTATAGGAACGG+GGG + chr5_3:9951286-9951305 Msa0797730:intron 45.0%
ATACTGTCATAAGAAGGCCG+TGG + chr5_3:9951446-9951465 Msa0797730:five_prime_UTR 45.0%
TCTGCAGTCCATTTCTGCTT+AGG - chr5_3:9951491-9951510 None:intergenic 45.0%
!! GAAATGGACTGCAGAAGAAG+AGG + chr5_3:9951496-9951515 Msa0797730:CDS 45.0%
AGCTGGAGTAGTCAAATACG+GGG + chr5_3:9951529-9951548 Msa0797730:CDS 45.0%
TCAAATACGGGGCTGGAAAA+TGG + chr5_3:9951540-9951559 Msa0797730:CDS 45.0%
! CGCAAAATGGTGCTGAAATC+TGG - chr5_3:9951584-9951603 None:intergenic 45.0%
! GGTTTGAGATGCTACTGCTA+CGG + chr5_3:9951697-9951716 Msa0797730:intron 45.0%
GCTATGAACAGGACAAATGG+AGG + chr5_3:9951852-9951871 Msa0797730:intron 45.0%
!!! TTTCATTTTTCGGGGGTGGT+AGG - chr5_3:9951940-9951959 None:intergenic 45.0%
ATATTGAACTATGGCGGTCG+AGG - chr5_3:9951978-9951997 None:intergenic 45.0%
CCAGAAACTGAAAGAGGCTT+AGG - chr5_3:9952019-9952038 None:intergenic 45.0%
CCTAAGCCTCTTTCAGTTTC+TGG + chr5_3:9952016-9952035 Msa0797730:CDS 45.0%
! AAGCCTCTTTCAGTTTCTGG+TGG + chr5_3:9952019-9952038 Msa0797730:CDS 45.0%
GGTTGCTTAATGCAGTATGC+CGG + chr5_3:9952221-9952240 Msa0797730:intron 45.0%
!! CGACTCGATTGTCAAGTTGA+AGG + chr5_3:9952603-9952622 Msa0797730:CDS 45.0%
!! TGTCAAGTTGAAGGAGCCAA+AGG + chr5_3:9952612-9952631 Msa0797730:CDS 45.0%
!! GTCAAGTTGAAGGAGCCAAA+GGG + chr5_3:9952613-9952632 Msa0797730:CDS 45.0%
! CGCCATTGCTGCTTATATAG+AGG + chr5_3:9952648-9952667 Msa0797730:CDS 45.0%
GTAACTGATCTCACTGAGTG+AGG - chr5_3:9952749-9952768 None:intergenic 45.0%
! GGCTGACCGATATTTTCTAG+AGG - chr5_3:9952867-9952886 None:intergenic 45.0%
! GAGAATAACGGAATGTTGGG+CGG + chr5_3:9952962-9952981 Msa0797730:intron 45.0%
AAGGAGAGTAGATCAGATGG+AGG + chr5_3:9953178-9953197 Msa0797730:intron 45.0%
GAGGATAGTCAGATCACTAG+AGG + chr5_3:9953197-9953216 Msa0797730:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr5_3:9953340-9953359 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr5_3:9953341-9953360 None:intergenic 45.0%
! TCAAGCCTTATCCCACTAAG+TGG - chr5_3:9953342-9953361 None:intergenic 45.0%
CTTAGTGGGATAAGGCTTGA+TGG + chr5_3:9953342-9953361 Msa0797730:intron 45.0%
! GAGCTTAGGGGAACTTGTTT+AGG - chr5_3:9953526-9953545 None:intergenic 45.0%
! GTTAAGAGCTTGTTCTTGCC+AGG - chr5_3:9953552-9953571 None:intergenic 45.0%
TGCCTTCCTGTGGTTAAGAA+AGG + chr5_3:9953576-9953595 Msa0797730:intron 45.0%
AGCCTTTCTTAACCACAGGA+AGG - chr5_3:9953581-9953600 None:intergenic 45.0%
GCTAAGCCTTTCTTAACCAC+AGG - chr5_3:9953585-9953604 None:intergenic 45.0%
!! GACCGGTATTGATCCTATTG+AGG - chr5_3:9953730-9953749 None:intergenic 45.0%
!! TTATGAGGTTTGGTGGAGAC+CGG - chr5_3:9953747-9953766 None:intergenic 45.0%
! CTGCAAACTTTTGTGGCGAA+GGG + chr5_3:9953888-9953907 Msa0797730:intron 45.0%
CAGTCGAACTACGCACATAT+GGG + chr5_3:9954049-9954068 Msa0797730:intron 45.0%
CATATGGGCATTCTCTGTAG+TGG + chr5_3:9954064-9954083 Msa0797730:intron 45.0%
ATGCTCTTCCTTGTTACTCC+TGG + chr5_3:9954272-9954291 Msa0797730:CDS 45.0%
TCTTCCTTGTTACTCCTGGA+AGG + chr5_3:9954276-9954295 Msa0797730:CDS 45.0%
CTTCCTTGTTACTCCTGGAA+GGG + chr5_3:9954277-9954296 Msa0797730:CDS 45.0%
GTTTGCAAAAGCAGCAACGA+AGG + chr5_3:9954518-9954537 Msa0797730:CDS 45.0%
TTTATTCTCTATGGAGGGGG+TGG + chr5_3:9955005-9955024 Msa0797730:three_prime_UTR 45.0%
TTATTCTCTATGGAGGGGGT+GGG + chr5_3:9955006-9955025 Msa0797730:three_prime_UTR 45.0%
ATAATGCGCCCTATCTAGGT+AGG + chr5_3:9955141-9955160 Msa0797730:three_prime_UTR 45.0%
TAATGCGCCCTATCTAGGTA+GGG + chr5_3:9955142-9955161 Msa0797730:three_prime_UTR 45.0%
TGAACAGCCCTACCTAGATA+GGG - chr5_3:9955152-9955171 None:intergenic 45.0%
ATGAACAGCCCTACCTAGAT+AGG - chr5_3:9955153-9955172 None:intergenic 45.0%
TATCTAGGTAGGGCTGTTCA+TGG + chr5_3:9955152-9955171 Msa0797730:three_prime_UTR 45.0%
CAGGTGAAGCCATTGAAGTT+TGG - chr5_3:9955231-9955250 None:intergenic 45.0%
!!! ATTTTTTTTTTTTTTTGAAA+TGG + chr5_3:9950580-9950599 Msa0797730:intron 5.0%
CCAGGACTTATCCCACTAAG+TGG - chr5_3:9951190-9951209 None:intergenic 50.0%
CCACTTAGTGGGATAAGTCC+TGG + chr5_3:9951187-9951206 Msa0797730:intron 50.0%
CACCCATTGGAAGAAGTCCA+CGG - chr5_3:9951466-9951485 None:intergenic 50.0%
!! TTCTGCTTAGGAGCACCCAT+TGG - chr5_3:9951479-9951498 None:intergenic 50.0%
TGGGTGCTCCTAAGCAGAAA+TGG + chr5_3:9951480-9951499 Msa0797730:CDS 50.0%
TGACTGCAATATGGGGATCC+AGG + chr5_3:9951885-9951904 Msa0797730:CDS 50.0%
AATATGGGGATCCAGGCAGA+AGG + chr5_3:9951892-9951911 Msa0797730:CDS 50.0%
! TGCAAGTTTTGCCTTCTGCC+TGG - chr5_3:9951906-9951925 None:intergenic 50.0%
CAAAGATGGGGATGTTGCGT+TGG + chr5_3:9953018-9953037 Msa0797730:intron 50.0%
!! ATGATAGTGGAAACAGGCGC+AGG + chr5_3:9953115-9953134 Msa0797730:intron 50.0%
AGTCAGATCACTAGAGGCAG+AGG + chr5_3:9953203-9953222 Msa0797730:intron 50.0%
ACTAAGTGGGGTCTGCTACA+TGG - chr5_3:9953328-9953347 None:intergenic 50.0%
ATGTAGCAGACCCCACTTAG+TGG + chr5_3:9953327-9953346 Msa0797730:intron 50.0%
TGTAGCAGACCCCACTTAGT+GGG + chr5_3:9953328-9953347 Msa0797730:intron 50.0%
AGACCCCACTTAGTGGGATA+AGG + chr5_3:9953334-9953353 Msa0797730:intron 50.0%
TCTTGCCAGGTGAGAGCTTA+GGG - chr5_3:9953539-9953558 None:intergenic 50.0%
TTCTTGCCAGGTGAGAGCTT+AGG - chr5_3:9953540-9953559 None:intergenic 50.0%
CTGAAGCATATGGTGGCAAG+CGG + chr5_3:9953784-9953803 Msa0797730:CDS 50.0%
GGCAAGCGGCAAATTAGTGA+AGG + chr5_3:9953798-9953817 Msa0797730:CDS 50.0%
CCTTCGCCACAAAAGTTTGC+AGG - chr5_3:9953890-9953909 None:intergenic 50.0%
! CCTGCAAACTTTTGTGGCGA+AGG + chr5_3:9953887-9953906 Msa0797730:intron 50.0%
GCAGTCGAACTACGCACATA+TGG + chr5_3:9954048-9954067 Msa0797730:intron 50.0%
! AATCTTTTGGCCTCCCTTCC+AGG - chr5_3:9954293-9954312 None:intergenic 50.0%
AGCAGCTGCAAAAGCAGTTG+CGG + chr5_3:9954413-9954432 Msa0797730:CDS 50.0%
AACAGCTGAAGCTGAAGCAG+AGG + chr5_3:9954485-9954504 Msa0797730:CDS 50.0%
AGGTAGGGCTGTTCATGGAT+TGG + chr5_3:9955157-9955176 Msa0797730:three_prime_UTR 50.0%
CAGAAGAAGACTGCATCCCG+AGG + chr5_3:9951391-9951410 Msa0797730:five_prime_UTR 55.0%
AGGCCGTGGACTTCTTCCAA+TGG + chr5_3:9951460-9951479 Msa0797730:exon 55.0%
GGCCGTGGACTTCTTCCAAT+GGG + chr5_3:9951461-9951480 Msa0797730:exon 55.0%
!! GAAGAGGCAGCTCTGAAAGC+TGG + chr5_3:9951512-9951531 Msa0797730:CDS 55.0%
GGAGTAGTCAAATACGGGGC+TGG + chr5_3:9951533-9951552 Msa0797730:CDS 55.0%
GAACTATGGCGGTCGAGGTT+GGG - chr5_3:9951973-9951992 None:intergenic 55.0%
TGAACTATGGCGGTCGAGGT+TGG - chr5_3:9951974-9951993 None:intergenic 55.0%
GGCTTAGGAGCTGCAACTTC+TGG - chr5_3:9952004-9952023 None:intergenic 55.0%
GCGGCAATGTCAGAACCCTT+TGG - chr5_3:9952631-9952650 None:intergenic 55.0%
GGGATGTTGCGTTGGATGTG+TGG + chr5_3:9953026-9953045 Msa0797730:intron 55.0%
! ATAGTGGAAACAGGCGCAGG+TGG + chr5_3:9953118-9953137 Msa0797730:intron 55.0%
CTCGGGGACTTCCATTCTTC+TGG + chr5_3:9953453-9953472 Msa0797730:intron 55.0%
AGTTCCCCTAAGCTCTCACC+TGG + chr5_3:9953531-9953550 Msa0797730:intron 55.0%
CTTGCCAGGTGAGAGCTTAG+GGG - chr5_3:9953538-9953557 None:intergenic 55.0%
CCTCCCTTCCAGGAGTAACA+AGG - chr5_3:9954283-9954302 None:intergenic 55.0%
CCTTGTTACTCCTGGAAGGG+AGG + chr5_3:9954280-9954299 Msa0797730:CDS 55.0%
AGCTGCAAAAGCAGTTGCGG+AGG + chr5_3:9954416-9954435 Msa0797730:CDS 55.0%
TGCTGTCTCAGCCTCAGCAA+TGG - chr5_3:9954451-9954470 None:intergenic 55.0%
TGAGGCTGAGACAGCAGCAA+GGG + chr5_3:9954455-9954474 Msa0797730:CDS 55.0%
! GAGGGGTGTGACAGCTCAAG+AGG + chr5_3:9954383-9954402 Msa0797730:CDS 60.0%
GGCAGAAGCTGCCATTGCTG+AGG + chr5_3:9954437-9954456 Msa0797730:CDS 60.0%
CTGAGGCTGAGACAGCAGCA+AGG + chr5_3:9954454-9954473 Msa0797730:CDS 60.0%
CTATGGCGGTCGAGGTTGGG+TGG - chr5_3:9951970-9951989 None:intergenic 65.0%
GGCTGAGACAGCAGCAAGGG+AGG + chr5_3:9954458-9954477 Msa0797730:CDS 65.0%
TGGCGGTCGAGGTTGGGTGG+TGG - chr5_3:9951967-9951986 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 9950226 9955258 9950226 ID=Msa0797730;Name=Msa0797730
chr5_3 mRNA 9950226 9955258 9950226 ID=Msa0797730-mRNA-1;Parent=Msa0797730;Name=Msa0797730-mRNA-1;_AED=0.28;_eAED=0.28;_QI=442|1|1|1|0.57|0.37|8|537|294
chr5_3 exon 9950226 9950433 9950226 ID=Msa0797730-mRNA-1:exon:4249;Parent=Msa0797730-mRNA-1
chr5_3 exon 9950730 9950841 9950730 ID=Msa0797730-mRNA-1:exon:4250;Parent=Msa0797730-mRNA-1
chr5_3 exon 9951357 9951628 9951357 ID=Msa0797730-mRNA-1:exon:4251;Parent=Msa0797730-mRNA-1
chr5_3 exon 9951863 9952071 9951863 ID=Msa0797730-mRNA-1:exon:4252;Parent=Msa0797730-mRNA-1
chr5_3 exon 9952585 9952669 9952585 ID=Msa0797730-mRNA-1:exon:4253;Parent=Msa0797730-mRNA-1
chr5_3 exon 9953736 9953819 9953736 ID=Msa0797730-mRNA-1:exon:4254;Parent=Msa0797730-mRNA-1
chr5_3 exon 9954216 9954664 9954216 ID=Msa0797730-mRNA-1:exon:4255;Parent=Msa0797730-mRNA-1
chr5_3 exon 9954814 9955258 9954814 ID=Msa0797730-mRNA-1:exon:4256;Parent=Msa0797730-mRNA-1
chr5_3 five_prime_UTR 9950226 9950433 9950226 ID=Msa0797730-mRNA-1:five_prime_utr;Parent=Msa0797730-mRNA-1
chr5_3 five_prime_UTR 9950730 9950841 9950730 ID=Msa0797730-mRNA-1:five_prime_utr;Parent=Msa0797730-mRNA-1
chr5_3 five_prime_UTR 9951357 9951478 9951357 ID=Msa0797730-mRNA-1:five_prime_utr;Parent=Msa0797730-mRNA-1
chr5_3 CDS 9951479 9951628 9951479 ID=Msa0797730-mRNA-1:cds;Parent=Msa0797730-mRNA-1
chr5_3 CDS 9951863 9952071 9951863 ID=Msa0797730-mRNA-1:cds;Parent=Msa0797730-mRNA-1
chr5_3 CDS 9952585 9952669 9952585 ID=Msa0797730-mRNA-1:cds;Parent=Msa0797730-mRNA-1
chr5_3 CDS 9953736 9953819 9953736 ID=Msa0797730-mRNA-1:cds;Parent=Msa0797730-mRNA-1
chr5_3 CDS 9954216 9954572 9954216 ID=Msa0797730-mRNA-1:cds;Parent=Msa0797730-mRNA-1
chr5_3 three_prime_UTR 9954573 9954664 9954573 ID=Msa0797730-mRNA-1:three_prime_utr;Parent=Msa0797730-mRNA-1
chr5_3 three_prime_UTR 9954814 9955258 9954814 ID=Msa0797730-mRNA-1:three_prime_utr;Parent=Msa0797730-mRNA-1
Gene Sequence

>Msa0797730

ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAGGCAGCTCTGAAAGCTGGAGTAGTCAAATACGGGGCTGGAAAATGGCGTACCATTCTTACAGACCCAGATTTCAGCACCATTTTGCGCATGCGTTCAAATGTAGATCTCAAGGACAAATGGAGGAACATAAATGTGACTGCAATATGGGGATCCAGGCAGAAGGCAAAACTTGCACTTAAAAAGAACCTACCACCCCCGAAAAATGAAAATAACCACCACCCAACCTCGACCGCCATAGTTCAATATAATCCAGAAGTTGCAGCTCCTAAGCCTCTTTCAGTTTCTGGTGGAATATCTACTTCCAAAGAACAAATATCAAGATTGGACAGCCTTATATTCGACTCGATTGTCAAGTTGAAGGAGCCAAAGGGTTCTGACATTGCCGCCATTGCTGCTTATATAGAGGATCAATACCGGTCTCCACCAAACCTCATAAAGTTACTGTCAACAAAACTGAAGCATATGGTGGCAAGCGGCAAATTAGTGAAGGTAAATCATAAGTACAGGATTGCAACAAATTCAACAAAAACATCCGAGAAAAGAAGATGCTCTTCCTTGTTACTCCTGGAAGGGAGGCCAAAAGATTCTCCAAAAGCAGAGAAAACTGATGCCAACATCCTTTCAAAATCTCAAATTGATGTTGAGCTTTTAAAAATGAGGGGTGTGACAGCTCAAGAGGTAGCAGCAGCAGCTGCAAAAGCAGTTGCGGAGGCAGAAGCTGCCATTGCTGAGGCTGAGACAGCAGCAAGGGAGGCTGAAACAGCTGAAGCTGAAGCAGAGGCTGCACGTGTGTTTGCAAAAGCAGCAACGAAGGCACTAAAATGCAGAAGACTTAATATTTGGTAA
Protein sequence

>Msa0797730

MGAPKQKWTAEEEAALKAGVVKYGAGKWRTILTDPDFSTILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNLPPPKNENNHHPTSTAIVQYNPEVAAPKPLSVSGGISTSKEQISRLDSLIFDSIVKLKEPKGSDIAAIAAYIEDQYRSPPNLIKLLSTKLKHMVASGKLVKVNHKYRIATNSTKTSEKRRCSSLLLLEGRPKDSPKAEKTDANILSKSQIDVELLKMRGVTAQEVAAAAAKAVAEAEAAIAEAETAAREAETAEAEAEAARVFAKAATKALKCRRLNIW*