Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798620 | XP_003611877.2 | 97.524 | 525 | 13 | 0 | 1 | 525 | 1 | 525 | 0.0 | 1070 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798620 | sp|Q8W4F0|DAR1_ARATH | 66.966 | 557 | 147 | 6 | 1 | 524 | 1 | 553 | 0.0 | 715 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798620 | G7KAS2 | 97.524 | 525 | 13 | 0 | 1 | 525 | 1 | 525 | 0.0 | 1070 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0798620 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798620 | MtrunA17_Chr8g0373781 | 74.812 | 532 | 125 | 5 | 1 | 524 | 1 | 531 | 0.0 | 772 |
| Msa0798620 | MtrunA17_Chr5g0403261 | 89.071 | 366 | 9 | 1 | 1 | 335 | 1 | 366 | 0.0 | 671 |
| Msa0798620 | MtrunA17_Chr1g0154501 | 59.351 | 524 | 157 | 6 | 1 | 524 | 1 | 468 | 0.0 | 611 |
| Msa0798620 | MtrunA17_Chr5g0436051 | 50.943 | 530 | 196 | 7 | 1 | 524 | 144 | 615 | 5.40e-178 | 514 |
| Msa0798620 | MtrunA17_Chr5g0403301 | 84.868 | 304 | 24 | 2 | 223 | 525 | 25 | 307 | 2.35e-177 | 501 |
| Msa0798620 | MtrunA17_Chr3g0112601 | 56.954 | 453 | 162 | 7 | 101 | 524 | 64 | 512 | 3.82e-167 | 483 |
| Msa0798620 | MtrunA17_Chr5g0403271 | 97.403 | 154 | 4 | 0 | 372 | 525 | 1 | 154 | 1.66e-105 | 312 |
| Msa0798620 | MtrunA17_Chr5g0403291 | 76.404 | 89 | 20 | 1 | 156 | 244 | 382 | 469 | 6.27e-42 | 157 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798620 | AT4G36860.1 | 66.966 | 557 | 147 | 6 | 1 | 524 | 1 | 553 | 0.0 | 715 |
| Msa0798620 | AT4G36860.3 | 64.655 | 580 | 146 | 7 | 1 | 524 | 1 | 577 | 0.0 | 709 |
| Msa0798620 | AT1G19270.1 | 52.921 | 582 | 165 | 9 | 1 | 524 | 1 | 531 | 0.0 | 582 |
| Msa0798620 | AT1G19270.2 | 52.921 | 582 | 165 | 9 | 1 | 524 | 1 | 531 | 0.0 | 582 |
| Msa0798620 | AT4G36860.2 | 64.588 | 449 | 125 | 5 | 1 | 416 | 1 | 448 | 0.0 | 569 |
| Msa0798620 | AT2G39830.3 | 57.528 | 445 | 166 | 4 | 102 | 524 | 75 | 518 | 0.0 | 521 |
| Msa0798620 | AT2G39830.1 | 56.291 | 453 | 174 | 5 | 94 | 524 | 77 | 527 | 0.0 | 520 |
| Msa0798620 | AT2G39830.2 | 55.921 | 456 | 174 | 6 | 94 | 524 | 77 | 530 | 5.02e-179 | 514 |
| Msa0798620 | AT2G39830.4 | 55.362 | 345 | 130 | 5 | 94 | 416 | 77 | 419 | 3.17e-135 | 399 |
| Msa0798620 | AT5G66620.1 | 46.250 | 480 | 229 | 10 | 47 | 517 | 181 | 640 | 1.60e-132 | 399 |
| Msa0798620 | AT5G66620.3 | 46.250 | 480 | 229 | 10 | 47 | 517 | 172 | 631 | 2.23e-132 | 399 |
| Msa0798620 | AT5G66620.4 | 46.250 | 480 | 229 | 10 | 47 | 517 | 172 | 631 | 2.23e-132 | 399 |
| Msa0798620 | AT5G66610.1 | 44.578 | 498 | 234 | 10 | 40 | 518 | 77 | 551 | 1.18e-128 | 387 |
| Msa0798620 | AT5G66610.3 | 46.154 | 455 | 205 | 8 | 66 | 518 | 8 | 424 | 1.09e-125 | 374 |
| Msa0798620 | AT5G66610.2 | 42.286 | 525 | 234 | 11 | 40 | 518 | 77 | 578 | 6.65e-123 | 373 |
| Msa0798620 | AT5G66630.1 | 48.000 | 375 | 176 | 8 | 148 | 517 | 338 | 698 | 4.84e-109 | 340 |
| Msa0798620 | AT5G66640.5 | 43.226 | 465 | 228 | 14 | 71 | 517 | 24 | 470 | 1.04e-106 | 327 |
| Msa0798620 | AT5G66640.1 | 43.488 | 453 | 221 | 13 | 81 | 517 | 5 | 438 | 3.01e-106 | 325 |
| Msa0798620 | AT5G66640.7 | 43.488 | 453 | 221 | 13 | 81 | 517 | 5 | 438 | 3.01e-106 | 325 |
| Msa0798620 | AT5G66640.4 | 43.011 | 465 | 228 | 14 | 71 | 517 | 24 | 469 | 4.21e-106 | 326 |
| Msa0798620 | AT5G17890.1 | 50.000 | 370 | 177 | 5 | 153 | 517 | 1235 | 1601 | 9.23e-104 | 341 |
| Msa0798620 | AT5G66640.3 | 49.536 | 323 | 152 | 6 | 205 | 517 | 10 | 331 | 6.04e-100 | 305 |
| Msa0798620 | AT5G66640.6 | 39.785 | 465 | 240 | 15 | 71 | 517 | 24 | 466 | 2.03e-90 | 285 |
| Msa0798620 | AT5G66640.2 | 39.570 | 465 | 240 | 15 | 71 | 517 | 24 | 465 | 8.11e-90 | 284 |
| Msa0798620 | AT5G66620.2 | 41.108 | 343 | 175 | 9 | 47 | 382 | 172 | 494 | 7.90e-77 | 251 |
Find 165 sgRNAs with CRISPR-Local
Find 370 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGATTCCTTCTTCAATTTC+TGG | 0.060868 | 5_3:+11358670 | None:intergenic |
| AGTATAGAGCTCATCCTTTC+TGG | 0.166643 | 5_3:-11359732 | Msa0798620:CDS |
| AACATGGTGATGATAGAATT+TGG | 0.189733 | 5_3:-11362648 | Msa0798620:CDS |
| GGCTCTAATCATAGAATTTC+AGG | 0.190682 | 5_3:-11362688 | Msa0798620:CDS |
| TCGAAGAATTTCTTCAATTC+AGG | 0.202356 | 5_3:+11363171 | None:intergenic |
| ATGTAACATAATCTAGTAAA+AGG | 0.210913 | 5_3:+11357937 | None:intergenic |
| TAAAGATAAATTTCCTGTTT+TGG | 0.214243 | 5_3:+11358098 | None:intergenic |
| TCTCCCTGTAGCAGGATTTA+TGG | 0.233835 | 5_3:+11360744 | None:intergenic |
| CATGCATGGCTCAGGCTTAA+AGG | 0.237169 | 5_3:-11358802 | Msa0798620:intron |
| GTCTTCCTCAAGTTGATCTT+TGG | 0.266836 | 5_3:+11361958 | None:intergenic |
| TATAGAATGTGGTGAGAAAA+TGG | 0.280117 | 5_3:+11363228 | None:intergenic |
| CATCGACGGGTCAGTCTATA+AGG | 0.282747 | 5_3:+11358984 | None:intergenic |
| GTGTCTAGACTCAGCAATTA+TGG | 0.285275 | 5_3:-11359478 | Msa0798620:CDS |
| CATAAAATTCTAGTATTTCA+TGG | 0.285949 | 5_3:+11359430 | None:intergenic |
| GTCCTCTAGTTTCAGGTAAA+TGG | 0.286014 | 5_3:+11359200 | None:intergenic |
| CGGTGTCCTGCCCCTATACT+TGG | 0.286586 | 5_3:+11359029 | None:intergenic |
| AAGAAATTCTTCGAACTAAC+AGG | 0.290166 | 5_3:-11363162 | Msa0798620:intron |
| TACCAGGCGGTACTTAAGTA+TGG | 0.294982 | 5_3:-11358430 | Msa0798620:CDS |
| CAAATTCATTCATATTTCAT+TGG | 0.316172 | 5_3:-11363270 | Msa0798620:five_prime_UTR |
| GCAGCAAGTTCCTATGCTTT+TGG | 0.319574 | 5_3:-11359385 | Msa0798620:CDS |
| ACCTCTTTCCACCAGGATTC+AGG | 0.345128 | 5_3:-11361847 | Msa0798620:intron |
| TTAGAATCAGAGCTCTATTC+TGG | 0.345608 | 5_3:-11358625 | Msa0798620:CDS |
| TGCTGTCGAGCTCATGCGTT+GGG | 0.363900 | 5_3:+11359695 | None:intergenic |
| TCAGAGCTCTATTCTGGATC+TGG | 0.372505 | 5_3:-11358619 | Msa0798620:CDS |
| AAGCAGAGTCCTCTAGTTTC+AGG | 0.382892 | 5_3:+11359193 | None:intergenic |
| TAAGTTGCATGGGAGGGGTC+TGG | 0.385209 | 5_3:-11361018 | Msa0798620:CDS |
| AAATTCATTCATATTTCATT+GGG | 0.410265 | 5_3:-11363269 | Msa0798620:five_prime_UTR |
| TCAATTTCTGGCCTCAAGTT+GGG | 0.412121 | 5_3:+11358682 | None:intergenic |
| TTCTTGCAAACATCACATCT+TGG | 0.412310 | 5_3:+11360713 | None:intergenic |
| CTTTCAACATGGAAAAGTTC+CGG | 0.413229 | 5_3:+11358375 | None:intergenic |
| TCTTCCAATCACTGATTATG+AGG | 0.417847 | 5_3:-11360963 | Msa0798620:intron |
| TTCAATTTCTGGCCTCAAGT+TGG | 0.417922 | 5_3:+11358681 | None:intergenic |
| ATGGAAAAGTTCCGGTCAAA+TGG | 0.421969 | 5_3:+11358383 | None:intergenic |
| ACATGGTGATGATAGAATTT+GGG | 0.426199 | 5_3:-11362647 | Msa0798620:CDS |
| CTAACCTCATAATCAGTGAT+TGG | 0.437164 | 5_3:+11360959 | None:intergenic |
| TTTGTCAATTATTTGTATGA+TGG | 0.440224 | 5_3:+11358152 | None:intergenic |
| CTATCAACACTCTTAACAAC+TGG | 0.445569 | 5_3:-11357746 | Msa0798620:three_prime_UTR |
| TCTTGCAAACATCACATCTT+GGG | 0.448902 | 5_3:+11360714 | None:intergenic |
| GTGATGCTTCTCCCTGTAGC+AGG | 0.451634 | 5_3:+11360736 | None:intergenic |
| TGAACATACTCTAGAACAAA+AGG | 0.455727 | 5_3:+11358063 | None:intergenic |
| TATTTGATTTGAGAGGATGA+AGG | 0.463968 | 5_3:+11358276 | None:intergenic |
| CGGTCAAATGGATATGATCA+AGG | 0.464591 | 5_3:+11358395 | None:intergenic |
| GGCTGTCACTTCGCATCGAC+GGG | 0.470821 | 5_3:+11358971 | None:intergenic |
| CTGAAAGGCAAGAAAGTTGT+TGG | 0.477499 | 5_3:-11362413 | Msa0798620:intron |
| TATGTTTATAGATTGTTGAC+AGG | 0.479289 | 5_3:-11358850 | Msa0798620:intron |
| TTTCTCTGCAGAATCTGTGC+TGG | 0.480650 | 5_3:-11361073 | Msa0798620:intron |
| TGGTTTACAAAGTTTCTCAA+TGG | 0.483060 | 5_3:-11362709 | Msa0798620:CDS |
| GAAGATGGCAAGCATGGCAT+TGG | 0.483972 | 5_3:+11360981 | None:intergenic |
| GTGAGGTATCTGACTCAATC+TGG | 0.485020 | 5_3:+11358482 | None:intergenic |
| GCTGGATGCAATGCTGAGAT+TGG | 0.485337 | 5_3:-11361055 | Msa0798620:CDS |
| TTGTTGTAGCTGCGAAAGAA+TGG | 0.486878 | 5_3:-11359665 | Msa0798620:CDS |
| AACTTCCACTTCTTTCATGT+TGG | 0.496086 | 5_3:+11357707 | None:intergenic |
| GTATTTCATGGTAGAGAGGT+TGG | 0.496331 | 5_3:+11359442 | None:intergenic |
| TCAGATACCTCACCAGCCTA+TGG | 0.497390 | 5_3:-11358472 | Msa0798620:CDS |
| ATGAGGCCAGCTGAATTAGC+CGG | 0.498369 | 5_3:+11359757 | None:intergenic |
| AGATAATGCATGCATGGCTC+AGG | 0.501774 | 5_3:-11358810 | Msa0798620:CDS |
| AGATTATGTTACATTAAAAG+AGG | 0.502935 | 5_3:-11357928 | Msa0798620:three_prime_UTR |
| TTGTTCTGCATCATCGAAGA+AGG | 0.503405 | 5_3:-11358551 | Msa0798620:CDS |
| TATGAACCAATGCCTCATCT+TGG | 0.505007 | 5_3:-11358323 | Msa0798620:three_prime_UTR |
| CAGAGCTCTATTCTGGATCT+GGG | 0.507459 | 5_3:-11358618 | Msa0798620:CDS |
| TCTCCCCACCTCTTTCCACC+AGG | 0.509167 | 5_3:-11361854 | Msa0798620:CDS |
| CTTGATCATATCCATTTGAC+CGG | 0.509477 | 5_3:-11358394 | Msa0798620:CDS |
| GGTTGATAGTGTTGGTCTCT+CGG | 0.509803 | 5_3:-11358231 | Msa0798620:three_prime_UTR |
| ATATATAATTACCTGAATCC+TGG | 0.513713 | 5_3:+11361836 | None:intergenic |
| TGGATTCAGATCGGGTTACC+AGG | 0.515296 | 5_3:-11358446 | Msa0798620:CDS |
| TGTAACATAATCTAGTAAAA+GGG | 0.515347 | 5_3:+11357938 | None:intergenic |
| ATTCAATTAAGTTTGAGCAC+TGG | 0.516076 | 5_3:-11361917 | Msa0798620:CDS |
| CTTACCATAAATCCTGCTAC+AGG | 0.517147 | 5_3:-11360748 | Msa0798620:CDS |
| CAGATCCCGGCTAATTCAGC+TGG | 0.521586 | 5_3:-11359763 | Msa0798620:CDS |
| CTGTAGCAGGATTTATGGTA+AGG | 0.522745 | 5_3:+11360749 | None:intergenic |
| GGTGGAAAGAGGTGGGGAGA+AGG | 0.524431 | 5_3:+11361857 | None:intergenic |
| CATAATCAGTGATTGGAAGA+TGG | 0.526468 | 5_3:+11360966 | None:intergenic |
| GCACTAAATGAGGCCATTGA+GGG | 0.528915 | 5_3:-11359351 | Msa0798620:CDS |
| ATTTGATTTGAGAGGATGAA+GGG | 0.529990 | 5_3:+11358277 | None:intergenic |
| GTGCTGTCGAGCTCATGCGT+TGG | 0.530772 | 5_3:+11359694 | None:intergenic |
| TATGGAGATGGATTCAGATC+GGG | 0.531474 | 5_3:-11358454 | Msa0798620:CDS |
| ACCTCACCAGCCTATGGAGA+TGG | 0.534287 | 5_3:-11358466 | Msa0798620:CDS |
| CCTCAAGTTGATCTTTGGCA+CGG | 0.534386 | 5_3:+11361963 | None:intergenic |
| CTGAATCCATCTCCATAGGC+TGG | 0.535577 | 5_3:+11358460 | None:intergenic |
| GACGAGGAAGATGAGAATGT+TGG | 0.536005 | 5_3:-11362046 | Msa0798620:CDS |
| AATCTAGTAAAAGGGTAGGA+GGG | 0.536629 | 5_3:+11357946 | None:intergenic |
| AAAATGGAATCTAGTTCTAG+TGG | 0.537056 | 5_3:+11363244 | None:intergenic |
| ACCTGAATCCTGGTGGAAAG+AGG | 0.537281 | 5_3:+11361846 | None:intergenic |
| CGATCTGAATCCATCTCCAT+AGG | 0.537412 | 5_3:+11358456 | None:intergenic |
| ATCTAGTAAAAGGGTAGGAG+GGG | 0.537596 | 5_3:+11357947 | None:intergenic |
| TGGCTGTCACTTCGCATCGA+CGG | 0.539258 | 5_3:+11358970 | None:intergenic |
| CTCATGAGATAATGCATGCA+TGG | 0.539682 | 5_3:-11358816 | Msa0798620:CDS |
| CCTTCTAGCTAAAATTCAGC+AGG | 0.540630 | 5_3:-11361999 | Msa0798620:CDS |
| AGCACTAAATGAGGCCATTG+AGG | 0.541852 | 5_3:-11359352 | Msa0798620:CDS |
| CAGTTGTCAGATTAATCTGA+TGG | 0.542198 | 5_3:-11358252 | Msa0798620:three_prime_UTR |
| ACCAATGCCTCATCTTGGTA+TGG | 0.549200 | 5_3:-11358318 | Msa0798620:three_prime_UTR |
| TGTTATATGGTTACCTAGGA+AGG | 0.552829 | 5_3:+11358931 | None:intergenic |
| GAATCCTGGTGGAAAGAGGT+GGG | 0.554764 | 5_3:+11361850 | None:intergenic |
| CATGCATTATCTCATGAGCT+AGG | 0.555420 | 5_3:+11358821 | None:intergenic |
| TGTTCAACAAAACTTAAACT+CGG | 0.555958 | 5_3:-11358028 | Msa0798620:three_prime_UTR |
| TAATCTAGTAAAAGGGTAGG+AGG | 0.558229 | 5_3:+11357945 | None:intergenic |
| TATCTCCAACATGAAAGAAG+TGG | 0.560309 | 5_3:-11357712 | Msa0798620:three_prime_UTR |
| AGAAAACCAAGTATAGGGGC+AGG | 0.561310 | 5_3:-11359035 | Msa0798620:CDS |
| TGAGGCCAGCTGAATTAGCC+GGG | 0.562601 | 5_3:+11359758 | None:intergenic |
| TTGAGGCCAGAAATTGAAGA+AGG | 0.563599 | 5_3:-11358676 | Msa0798620:CDS |
| TGATTGGAAGATGGCAAGCA+TGG | 0.564914 | 5_3:+11360975 | None:intergenic |
| GGGCAATACAATGGCAAACA+TGG | 0.564946 | 5_3:-11362664 | Msa0798620:CDS |
| CTGAGTGCAGGATGATTTGA+CGG | 0.565766 | 5_3:-11362492 | Msa0798620:intron |
| TCCATACCAAGATGAGGCAT+TGG | 0.565975 | 5_3:+11358317 | None:intergenic |
| ACGGGTCAGTCTATAAGGCT+TGG | 0.569106 | 5_3:+11358989 | None:intergenic |
| TTTAAGAAAACCAAGTATAG+GGG | 0.569581 | 5_3:-11359039 | Msa0798620:CDS |
| GTAAGGACGGTTGCTAGACA+TGG | 0.570040 | 5_3:+11360766 | None:intergenic |
| TGAATCCTGGTGGAAAGAGG+TGG | 0.571390 | 5_3:+11361849 | None:intergenic |
| GCCCATACTTAAGTACCGCC+TGG | 0.571618 | 5_3:+11358428 | None:intergenic |
| AGGAAGACGAGCAACTTGCA+AGG | 0.572451 | 5_3:-11361943 | Msa0798620:CDS |
| AGGAATTCCTACGGTGGTGA+CGG | 0.573043 | 5_3:+11359156 | None:intergenic |
| TCTAGTATTTCATGGTAGAG+AGG | 0.573281 | 5_3:+11359438 | None:intergenic |
| TTGATTTGAGAGGATGAAGG+GGG | 0.574027 | 5_3:+11358279 | None:intergenic |
| TTTGATTTGAGAGGATGAAG+GGG | 0.580588 | 5_3:+11358278 | None:intergenic |
| CTATGGAGATGGATTCAGAT+CGG | 0.581389 | 5_3:-11358455 | Msa0798620:CDS |
| TGCAATGCTGAGATTGGCCA+TGG | 0.581581 | 5_3:-11361049 | Msa0798620:CDS |
| TCTAGTAAAAGGGTAGGAGG+GGG | 0.584139 | 5_3:+11357948 | None:intergenic |
| TGTCTTTCCACCAAAAGCAT+AGG | 0.584605 | 5_3:+11359375 | None:intergenic |
| ACCAGGCGGTACTTAAGTAT+GGG | 0.585146 | 5_3:-11358429 | Msa0798620:CDS |
| TTCTTCGATGATGCAGAACA+AGG | 0.585572 | 5_3:+11358553 | None:intergenic |
| TTATAGGTTATCCCAACTTG+AGG | 0.585861 | 5_3:-11358693 | Msa0798620:intron |
| AATCTGATGGTTGATAGTGT+TGG | 0.587415 | 5_3:-11358239 | Msa0798620:three_prime_UTR |
| TGGTTATCATGTCTGTGACT+CGG | 0.588138 | 5_3:+11359009 | None:intergenic |
| AGAAGGAATCTGTCAAGTGT+TGG | 0.595703 | 5_3:-11358659 | Msa0798620:CDS |
| GGAAAGACAAGCACTAAATG+AGG | 0.596661 | 5_3:-11359361 | Msa0798620:CDS |
| AAGGCCATACAAAACAAGAA+TGG | 0.597233 | 5_3:+11358950 | None:intergenic |
| GGAAGACGAGCAACTTGCAA+GGG | 0.598064 | 5_3:-11361942 | Msa0798620:CDS |
| AGCAGGATTTATGGTAAGGA+CGG | 0.599912 | 5_3:+11360753 | None:intergenic |
| TCCATCTCCATAGGCTGGTG+AGG | 0.600925 | 5_3:+11358465 | None:intergenic |
| CTATCAGAGGAGGATCTGAA+AGG | 0.603313 | 5_3:-11362428 | Msa0798620:CDS |
| GTCAAGTGTTGGCTCATATG+TGG | 0.608811 | 5_3:-11358648 | Msa0798620:CDS |
| GGTCAAATGGATATGATCAA+GGG | 0.611026 | 5_3:+11358396 | None:intergenic |
| TGCACTCTCTCTATCAGAGG+AGG | 0.611907 | 5_3:-11362438 | Msa0798620:CDS |
| GGTGTGTGAGAACATCTTTG+AGG | 0.615018 | 5_3:-11357907 | Msa0798620:three_prime_UTR |
| CAACTGATATTTGATTTGAG+AGG | 0.615427 | 5_3:+11358269 | None:intergenic |
| ACTGGTTCTCCTCCTCGACA+TGG | 0.617399 | 5_3:-11361899 | Msa0798620:CDS |
| ACATAATCTAGTAAAAGGGT+AGG | 0.618491 | 5_3:+11357942 | None:intergenic |
| ATGACTTGATTAGAAGAGCT+AGG | 0.619689 | 5_3:+11358000 | None:intergenic |
| TATAATTACCTGAATCCTGG+TGG | 0.627643 | 5_3:+11361839 | None:intergenic |
| AATCCTGGTGGAAAGAGGTG+GGG | 0.630175 | 5_3:+11361851 | None:intergenic |
| GGATCTGAACAAGCTAGTGA+AGG | 0.633602 | 5_3:-11357886 | Msa0798620:three_prime_UTR |
| TAGCTTTCAAACTTTCAACA+TGG | 0.634802 | 5_3:+11358364 | None:intergenic |
| AGAGAATCTTTGCCATGTCG+AGG | 0.635073 | 5_3:+11361887 | None:intergenic |
| GATGAGCTCTATACTCAATG+AGG | 0.636611 | 5_3:+11359740 | None:intergenic |
| TCAATTCAGGAACACCCAGT+AGG | 0.636646 | 5_3:+11363184 | None:intergenic |
| ATTTCAGGAGGGCAATACAA+TGG | 0.636955 | 5_3:-11362673 | Msa0798620:CDS |
| TCGTCAAGATGAAGTCATAG+AGG | 0.640438 | 5_3:+11363326 | None:intergenic |
| TTACCATAAATCCTGCTACA+GGG | 0.641135 | 5_3:-11360747 | Msa0798620:CDS |
| GGATAATCATCATAGTTCAG+TGG | 0.641892 | 5_3:-11362626 | Msa0798620:intron |
| GCATGGCATTGGAAGCATTG+TGG | 0.647853 | 5_3:+11360992 | None:intergenic |
| CACCATTTACCTGAAACTAG+AGG | 0.653687 | 5_3:-11359202 | Msa0798620:CDS |
| TGTTCTGCATCATCGAAGAA+GGG | 0.657416 | 5_3:-11358550 | Msa0798620:CDS |
| AATTGCACTCTCTCTATCAG+AGG | 0.658444 | 5_3:-11362441 | Msa0798620:CDS |
| TCTAATCATAGAATTTCAGG+AGG | 0.660809 | 5_3:-11362685 | Msa0798620:CDS |
| GAATCTTTGCCATGTCGAGG+AGG | 0.671664 | 5_3:+11361890 | None:intergenic |
| TTGTAGCTGCGAAAGAATGG+AGG | 0.672189 | 5_3:-11359662 | Msa0798620:intron |
| ATTGATGATGATGAAGACGA+AGG | 0.675784 | 5_3:+11358580 | None:intergenic |
| TAACACTCCATACCAAGATG+AGG | 0.677886 | 5_3:+11358311 | None:intergenic |
| TTCGATGATGCAGAACAAGG+CGG | 0.701566 | 5_3:+11358556 | None:intergenic |
| CCGTGCCAAAGATCAACTTG+AGG | 0.706058 | 5_3:-11361963 | Msa0798620:CDS |
| ACAACTTTGTAAAATTGACG+AGG | 0.708039 | 5_3:-11362062 | Msa0798620:CDS |
| CTAATCATAGAATTTCAGGA+GGG | 0.718623 | 5_3:-11362684 | Msa0798620:CDS |
| CTTTCGCAGCTACAACAACG+AGG | 0.721804 | 5_3:+11359670 | None:intergenic |
| GATGATGATGAAGACGAAGG+CGG | 0.740524 | 5_3:+11358583 | None:intergenic |
| ATTCAGATCGGGTTACCAGG+CGG | 0.751020 | 5_3:-11358443 | Msa0798620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGAATCATTTTATATAAT+CGG | - | chr5_3:11359604-11359623 | Msa0798620:intron | 10.0% |
| !!! | TTTTTTTTTATACTAACATA+TGG | - | chr5_3:11359810-11359829 | Msa0798620:intron | 10.0% |
| !!! | AAGTAAATAATTCAATTTTT+AGG | + | chr5_3:11359863-11359882 | None:intergenic | 10.0% |
| !! | ATATTTACTTAATAAGTTAT+AGG | + | chr5_3:11360984-11361003 | None:intergenic | 10.0% |
| !!! | GATTAATTTGTATAGAAAAA+TGG | + | chr5_3:11357756-11357775 | None:intergenic | 15.0% |
| !! | AAATTCATTCATATTTCATT+GGG | - | chr5_3:11357776-11357795 | Msa0798620:three_prime_UTR | 15.0% |
| !!! | AAAAAACATTCTTTTTTGTT+TGG | - | chr5_3:11357929-11357948 | Msa0798620:three_prime_UTR | 15.0% |
| !!! | AAAAACATTCTTTTTTGTTT+GGG | - | chr5_3:11357930-11357949 | Msa0798620:three_prime_UTR | 15.0% |
| !! | TTAATGTGTATAAGAAATAT+GGG | - | chr5_3:11358728-11358747 | Msa0798620:intron | 15.0% |
| !!! | GATTTTCATAAAAAAGTATT+TGG | + | chr5_3:11359264-11359283 | None:intergenic | 15.0% |
| !!! | TATTAAGTATTTCTGAATTA+TGG | - | chr5_3:11359479-11359498 | Msa0798620:CDS | 15.0% |
| !!! | TTGAATCATTTTATATAATC+GGG | - | chr5_3:11359605-11359624 | Msa0798620:intron | 15.0% |
| !!! | TACTTAGATTTTATTAACTA+AGG | + | chr5_3:11359718-11359737 | None:intergenic | 15.0% |
| !! | TTATGAAGATTATATCTATA+TGG | + | chr5_3:11359769-11359788 | None:intergenic | 15.0% |
| !! | ACAATTATTAGATTTCAAAT+AGG | + | chr5_3:11360852-11360871 | None:intergenic | 15.0% |
| !! | AAGATTTGTGAATTATATAA+CGG | - | chr5_3:11361956-11361975 | Msa0798620:CDS | 15.0% |
| !! | CAAATTCATTCATATTTCAT+TGG | - | chr5_3:11357775-11357794 | Msa0798620:three_prime_UTR | 20.0% |
| !! | GAAGAAAAAAATATAGAATG+TGG | + | chr5_3:11357831-11357850 | None:intergenic | 20.0% |
| !!! | TATATTATAGTTGTTGATTC+TGG | - | chr5_3:11358026-11358045 | Msa0798620:three_prime_UTR | 20.0% |
| !!! | GGAATAATTTTGTGTAATAT+GGG | - | chr5_3:11358312-11358331 | Msa0798620:three_prime_UTR | 20.0% |
| !! | TTTCAATTTCTTACTAATGA+AGG | + | chr5_3:11358458-11358477 | None:intergenic | 20.0% |
| !! | ATAGTTTGAATATGTAATTG+TGG | - | chr5_3:11358526-11358545 | Msa0798620:CDS | 20.0% |
| !! | GTTAATGTGTATAAGAAATA+TGG | - | chr5_3:11358727-11358746 | Msa0798620:intron | 20.0% |
| !! | TAATGTGTATAAGAAATATG+GGG | - | chr5_3:11358729-11358748 | Msa0798620:intron | 20.0% |
| !!! | TTTTACTTATACTTTGGTAT+GGG | + | chr5_3:11358903-11358922 | None:intergenic | 20.0% |
| !! | AAAAAAATCGTGAGATATAA+CGG | + | chr5_3:11359797-11359816 | None:intergenic | 20.0% |
| !! | GTTGTTCATTTGTTTAAATA+TGG | + | chr5_3:11359934-11359953 | None:intergenic | 20.0% |
| !! | CAATACGATTATGAATAATA+CGG | - | chr5_3:11360230-11360249 | Msa0798620:intron | 20.0% |
| !! | ATTTCTTTCATTTCAATAAC+TGG | - | chr5_3:11360755-11360774 | Msa0798620:CDS | 20.0% |
| !! | TTAAAACATTAATAGCAACT+GGG | - | chr5_3:11361139-11361158 | Msa0798620:intron | 20.0% |
| !! | CATAAATTAGAATAGATACT+AGG | + | chr5_3:11361474-11361493 | None:intergenic | 20.0% |
| !! | CTAGTATCTATTCTAATTTA+TGG | - | chr5_3:11361472-11361491 | Msa0798620:intron | 20.0% |
| !!! | AAAAGATATTTTGAATCCTT+TGG | + | chr5_3:11361517-11361536 | None:intergenic | 20.0% |
| !!! | AAATATCTTTTTCTTGATGA+TGG | - | chr5_3:11361526-11361545 | Msa0798620:intron | 20.0% |
| !! | CATAAAATTCTAGTATTTCA+TGG | + | chr5_3:11361618-11361637 | None:intergenic | 20.0% |
| !!! | GAAATACTAGAATTTTATGA+AGG | - | chr5_3:11361619-11361638 | Msa0798620:intron | 20.0% |
| !!! | ATTTTAAGAAAACCAAGTAT+AGG | - | chr5_3:11362004-11362023 | Msa0798620:CDS | 20.0% |
| !!! | TTTTAAGAAAACCAAGTATA+GGG | - | chr5_3:11362005-11362024 | Msa0798620:CDS | 20.0% |
| !! | TTTGTCAATTATTTGTATGA+TGG | + | chr5_3:11362896-11362915 | None:intergenic | 20.0% |
| !!! | TAAAGATAAATTTCCTGTTT+TGG | + | chr5_3:11362950-11362969 | None:intergenic | 20.0% |
| !!! | TTTAAGTTTTGTTGAACAAA+GGG | + | chr5_3:11363015-11363034 | None:intergenic | 20.0% |
| !! | TGTAACATAATCTAGTAAAA+GGG | + | chr5_3:11363110-11363129 | None:intergenic | 20.0% |
| !! | ATGTAACATAATCTAGTAAA+AGG | + | chr5_3:11363111-11363130 | None:intergenic | 20.0% |
| !! | AGATTATGTTACATTAAAAG+AGG | - | chr5_3:11363117-11363136 | Msa0798620:intron | 20.0% |
| !! | TTGAGAATTATGAAGAAAAA+TGG | - | chr5_3:11363203-11363222 | Msa0798620:five_prime_UTR | 20.0% |
| ! | TCTTCTTAAAAAAATCCTAC+TGG | - | chr5_3:11357846-11357865 | Msa0798620:three_prime_UTR | 25.0% |
| ! | CTTCTTAAAAAAATCCTACT+GGG | - | chr5_3:11357847-11357866 | Msa0798620:three_prime_UTR | 25.0% |
| !! | GGGAATAATTTTGTGTAATA+TGG | - | chr5_3:11358311-11358330 | Msa0798620:three_prime_UTR | 25.0% |
| !! | TAATTTTGTGTAATATGGGT+TGG | - | chr5_3:11358316-11358335 | Msa0798620:three_prime_UTR | 25.0% |
| !!! | TACAATTTTTCTGAGACTTA+AGG | - | chr5_3:11358501-11358520 | Msa0798620:CDS | 25.0% |
| !! | TAAGAAATATGGGGATATTT+TGG | - | chr5_3:11358738-11358757 | Msa0798620:intron | 25.0% |
| !! | CTTTTACTTATACTTTGGTA+TGG | + | chr5_3:11358904-11358923 | None:intergenic | 25.0% |
| ! | CATACCAAAGTATAAGTAAA+AGG | - | chr5_3:11358902-11358921 | Msa0798620:intron | 25.0% |
| ! | ATTATGAGATAAAGAACATG+AGG | + | chr5_3:11358928-11358947 | None:intergenic | 25.0% |
| ! | ATATATAATTACCTGAATCC+TGG | + | chr5_3:11359212-11359231 | None:intergenic | 25.0% |
| !!! | TTCTGTTTGGCAATATTTTT+TGG | + | chr5_3:11359440-11359459 | None:intergenic | 25.0% |
| ! | GTTTCATAACATATTCTGTT+TGG | + | chr5_3:11359453-11359472 | None:intergenic | 25.0% |
| ! | TCAGAAATACTTAATAACTG+AGG | + | chr5_3:11359475-11359494 | None:intergenic | 25.0% |
| !! | AAAAGTGTAAAGGAAAACAA+GGG | + | chr5_3:11359559-11359578 | None:intergenic | 25.0% |
| !! | AAAAAGTGTAAAGGAAAACA+AGG | + | chr5_3:11359560-11359579 | None:intergenic | 25.0% |
| ! | GTTTATCATGTTTCATATCA+TGG | + | chr5_3:11359661-11359680 | None:intergenic | 25.0% |
| !! | ATCCTATTTTCATATGTTCA+TGG | - | chr5_3:11359898-11359917 | Msa0798620:intron | 25.0% |
| ! | ATCCATGAACATATGAAAAT+AGG | + | chr5_3:11359903-11359922 | None:intergenic | 25.0% |
| ! | ATAACTATGACTGAAATTTG+AGG | + | chr5_3:11360921-11360940 | None:intergenic | 25.0% |
| ! | TATCATATGCTTGAAATATG+AGG | - | chr5_3:11360944-11360963 | Msa0798620:intron | 25.0% |
| ! | GTTAAAACATTAATAGCAAC+TGG | - | chr5_3:11361138-11361157 | Msa0798620:intron | 25.0% |
| ! | TAAAACATTAATAGCAACTG+GGG | - | chr5_3:11361140-11361159 | Msa0798620:intron | 25.0% |
| ! | TGTTTCCTAATTAGTAACAA+CGG | + | chr5_3:11361440-11361459 | None:intergenic | 25.0% |
| ! | AAAGTAACAACTCTTAAGTT+AGG | + | chr5_3:11361798-11361817 | None:intergenic | 25.0% |
| !!! | TACTTGGTTTTCTTAAAATC+TGG | + | chr5_3:11362003-11362022 | None:intergenic | 25.0% |
| ! | TTTAAGAAAACCAAGTATAG+GGG | - | chr5_3:11362006-11362025 | Msa0798620:CDS | 25.0% |
| ! | CTTTCACTGTATATAATTCA+AGG | - | chr5_3:11362168-11362187 | Msa0798620:intron | 25.0% |
| ! | TATGTTTATAGATTGTTGAC+AGG | - | chr5_3:11362195-11362214 | Msa0798620:intron | 25.0% |
| !!! | GAATTCTTAAAAAGTGCTTT+AGG | + | chr5_3:11362928-11362947 | None:intergenic | 25.0% |
| !!! | CTTTTTAAGAATTCCAAAAC+AGG | - | chr5_3:11362934-11362953 | Msa0798620:intron | 25.0% |
| !!! | GTTTAAGTTTTGTTGAACAA+AGG | + | chr5_3:11363016-11363035 | None:intergenic | 25.0% |
| ! | TGTTCAACAAAACTTAAACT+CGG | - | chr5_3:11363017-11363036 | Msa0798620:intron | 25.0% |
| !! | AAAATGGAATCTAGTTCTAG+TGG | + | chr5_3:11357804-11357823 | None:intergenic | 30.0% |
| TATAGAATGTGGTGAGAAAA+TGG | + | chr5_3:11357820-11357839 | None:intergenic | 30.0% | |
| TCGAAGAATTTCTTCAATTC+AGG | + | chr5_3:11357877-11357896 | None:intergenic | 30.0% | |
| AAGAAATTCTTCGAACTAAC+AGG | - | chr5_3:11357883-11357902 | Msa0798620:three_prime_UTR | 30.0% | |
| ! | AAAGTTTCTTGAAAGCATAG+CGG | - | chr5_3:11357992-11358011 | Msa0798620:three_prime_UTR | 30.0% |
| CAAAATACAGATGTAAACAC+CGG | + | chr5_3:11358176-11358195 | None:intergenic | 30.0% | |
| !! | TGGCATATTTTCAGGAAAAA+GGG | - | chr5_3:11358291-11358310 | Msa0798620:three_prime_UTR | 30.0% |
| TGGTTTACAAAGTTTCTCAA+TGG | - | chr5_3:11358336-11358355 | Msa0798620:three_prime_UTR | 30.0% | |
| TCTAATCATAGAATTTCAGG+AGG | - | chr5_3:11358360-11358379 | Msa0798620:exon | 30.0% | |
| CTAATCATAGAATTTCAGGA+GGG | - | chr5_3:11358361-11358380 | Msa0798620:exon | 30.0% | |
| ! | AACATGGTGATGATAGAATT+TGG | - | chr5_3:11358397-11358416 | Msa0798620:CDS | 30.0% |
| ! | ACATGGTGATGATAGAATTT+GGG | - | chr5_3:11358398-11358417 | Msa0798620:CDS | 30.0% |
| ! | TGGGTAACATATGTTTCTAA+TGG | - | chr5_3:11358798-11358817 | Msa0798620:intron | 30.0% |
| TTTATCTCATAATGTCTCAG+AGG | - | chr5_3:11358935-11358954 | Msa0798620:intron | 30.0% | |
| ACAACTTTGTAAAATTGACG+AGG | - | chr5_3:11358983-11359002 | Msa0798620:CDS | 30.0% | |
| ATTCAATTAAGTTTGAGCAC+TGG | - | chr5_3:11359128-11359147 | Msa0798620:intron | 30.0% | |
| !! | TTGGATTTGCTAATCAGATA+AGG | + | chr5_3:11359245-11359264 | None:intergenic | 30.0% |
| TCAGAGATTTAGTACATATG+CGG | - | chr5_3:11359512-11359531 | Msa0798620:CDS | 30.0% | |
| AAAGTGTAAAGGAAAACAAG+GGG | + | chr5_3:11359558-11359577 | None:intergenic | 30.0% | |
| ! | AAGAGGACAAAAAAGTGTAA+AGG | + | chr5_3:11359569-11359588 | None:intergenic | 30.0% |
| ATTTACTTTGTCACGAAACA+TGG | - | chr5_3:11359875-11359894 | Msa0798620:intron | 30.0% | |
| AAACAAATGAACAACATACC+TGG | - | chr5_3:11359939-11359958 | Msa0798620:intron | 30.0% | |
| TGCAACTTAAAAATCTTCCA+TGG | + | chr5_3:11360016-11360035 | None:intergenic | 30.0% | |
| !!! | TGGAAGATTTTTAAGTTGCA+TGG | - | chr5_3:11360016-11360035 | Msa0798620:intron | 30.0% |
| !!! | GGAAGATTTTTAAGTTGCAT+GGG | - | chr5_3:11360017-11360036 | Msa0798620:intron | 30.0% |
| TACTCAGCAATTCATTAGTT+AGG | - | chr5_3:11360171-11360190 | Msa0798620:intron | 30.0% | |
| ACTCAGCAATTCATTAGTTA+GGG | - | chr5_3:11360172-11360191 | Msa0798620:intron | 30.0% | |
| GAAAACTGTAAAGGAACAAA+TGG | + | chr5_3:11360260-11360279 | None:intergenic | 30.0% | |
| ATCAAAGTAGTCTCTTATCA+TGG | - | chr5_3:11360419-11360438 | Msa0798620:intron | 30.0% | |
| GCTTCATATATTCTAGTAAC+CGG | - | chr5_3:11360695-11360714 | Msa0798620:intron | 30.0% | |
| AACTATATCCAACTCATGAA+GGG | + | chr5_3:11360728-11360747 | None:intergenic | 30.0% | |
| ! | TTCATGAGTTGGATATAGTT+GGG | - | chr5_3:11360728-11360747 | Msa0798620:CDS | 30.0% |
| TTTCATTTCAATAACTGGTC+TGG | - | chr5_3:11360760-11360779 | Msa0798620:CDS | 30.0% | |
| ! | TCATGTTAGTTTCTCTTTAC+AGG | + | chr5_3:11360875-11360894 | None:intergenic | 30.0% |
| ! | ACTGAAATTTGAGGTTAATC+AGG | + | chr5_3:11360912-11360931 | None:intergenic | 30.0% |
| ! | TGATAGACATGTCATTGTTT+TGG | + | chr5_3:11361196-11361215 | None:intergenic | 30.0% |
| !! | CAGTATTTTTGTATCCAGAA+AGG | + | chr5_3:11361330-11361349 | None:intergenic | 30.0% |
| GTTTCCTAATTAGTAACAAC+GGG | + | chr5_3:11361439-11361458 | None:intergenic | 30.0% | |
| TTTGCTTCACTATTGAATGT+AGG | - | chr5_3:11361815-11361834 | Msa0798620:intron | 30.0% | |
| TTGCTTCACTATTGAATGTA+GGG | - | chr5_3:11361816-11361835 | Msa0798620:intron | 30.0% | |
| AGTTTGAAAAGAGTCGAATT+TGG | + | chr5_3:11361920-11361939 | None:intergenic | 30.0% | |
| TTGTGAAAGCAGATGTTATA+TGG | + | chr5_3:11362130-11362149 | None:intergenic | 30.0% | |
| TTTCTTGCATGATGTTATCA+GGG | + | chr5_3:11362282-11362301 | None:intergenic | 30.0% | |
| ATTTCTTGCATGATGTTATC+AGG | + | chr5_3:11362283-11362302 | None:intergenic | 30.0% | |
| !! | TCTGATTTTGAGAAGAAACT+TGG | - | chr5_3:11362525-11362544 | Msa0798620:intron | 30.0% |
| TAGCTTTCAAACTTTCAACA+TGG | + | chr5_3:11362684-11362703 | None:intergenic | 30.0% | |
| !! | ATTTGATTTGAGAGGATGAA+GGG | + | chr5_3:11362771-11362790 | None:intergenic | 30.0% |
| !! | TATTTGATTTGAGAGGATGA+AGG | + | chr5_3:11362772-11362791 | None:intergenic | 30.0% |
| !! | CAACTGATATTTGATTTGAG+AGG | + | chr5_3:11362779-11362798 | None:intergenic | 30.0% |
| !! | TGAACATACTCTAGAACAAA+AGG | + | chr5_3:11362985-11363004 | None:intergenic | 30.0% |
| ! | GTGAGACATTTTGTAGTTAT+GGG | + | chr5_3:11363078-11363097 | None:intergenic | 30.0% |
| ACATAATCTAGTAAAAGGGT+AGG | + | chr5_3:11363106-11363125 | None:intergenic | 30.0% | |
| TGGTAGAAAACTTGTAGAGA+CGG | - | chr5_3:11358046-11358065 | Msa0798620:three_prime_UTR | 35.0% | |
| ACATAGATACCAACACATGT+CGG | + | chr5_3:11358109-11358128 | None:intergenic | 35.0% | |
| !! | GTGGCATATTTTCAGGAAAA+AGG | - | chr5_3:11358290-11358309 | Msa0798620:three_prime_UTR | 35.0% |
| ! | GGCTCTAATCATAGAATTTC+AGG | - | chr5_3:11358357-11358376 | Msa0798620:three_prime_UTR | 35.0% |
| GGATAATCATCATAGTTCAG+TGG | - | chr5_3:11358419-11358438 | Msa0798620:CDS | 35.0% | |
| AGTTAAGTTCCAACTCAAAG+TGG | - | chr5_3:11358778-11358797 | Msa0798620:intron | 35.0% | |
| GTTAAGTTCCAACTCAAAGT+GGG | - | chr5_3:11358779-11358798 | Msa0798620:intron | 35.0% | |
| ATATGTTACCCACTTTGAGT+TGG | + | chr5_3:11358790-11358809 | None:intergenic | 35.0% | |
| CTAATGGTTAGAGATCATTG+AGG | - | chr5_3:11358814-11358833 | Msa0798620:CDS | 35.0% | |
| TTTGGTATGGGATAGATGAT+CGG | + | chr5_3:11358891-11358910 | None:intergenic | 35.0% | |
| ! | GAGGCCTTTTACTTATACTT+TGG | + | chr5_3:11358909-11358928 | None:intergenic | 35.0% |
| TATAATTACCTGAATCCTGG+TGG | + | chr5_3:11359209-11359228 | None:intergenic | 35.0% | |
| ACCTAATAAAGTGGACGATA+AGG | - | chr5_3:11359303-11359322 | Msa0798620:intron | 35.0% | |
| GCATATGTACTAAATCTCTG+AGG | + | chr5_3:11359513-11359532 | None:intergenic | 35.0% | |
| AAGTGTAAAGGAAAACAAGG+GGG | + | chr5_3:11359557-11359576 | None:intergenic | 35.0% | |
| !!! | CTTTTTTGTCCTCTTTCTCA+TGG | - | chr5_3:11359574-11359593 | Msa0798620:intron | 35.0% |
| AACAGTATTGCCATTGTGAA+AGG | - | chr5_3:11359678-11359697 | Msa0798620:CDS | 35.0% | |
| ACAGTATTGCCATTGTGAAA+GGG | - | chr5_3:11359679-11359698 | Msa0798620:CDS | 35.0% | |
| ! | ATGAACAACATACCTGGTTT+TGG | - | chr5_3:11359945-11359964 | Msa0798620:intron | 35.0% |
| ! | CAGAGAAATTTTCCAAAACC+AGG | + | chr5_3:11359960-11359979 | None:intergenic | 35.0% |
| !!! | AGATTTTTAAGTTGCATGGG+AGG | - | chr5_3:11360020-11360039 | Msa0798620:intron | 35.0% |
| !!! | GATTTTTAAGTTGCATGGGA+GGG | - | chr5_3:11360021-11360040 | Msa0798620:intron | 35.0% |
| !!! | ATTTTTAAGTTGCATGGGAG+GGG | - | chr5_3:11360022-11360041 | Msa0798620:intron | 35.0% |
| CATAATCAGTGATTGGAAGA+TGG | + | chr5_3:11360082-11360101 | None:intergenic | 35.0% | |
| ! | TCTTCCAATCACTGATTATG+AGG | - | chr5_3:11360082-11360101 | Msa0798620:intron | 35.0% |
| CTAACCTCATAATCAGTGAT+TGG | + | chr5_3:11360089-11360108 | None:intergenic | 35.0% | |
| CTAGACATGGAAAACTGTAA+AGG | + | chr5_3:11360269-11360288 | None:intergenic | 35.0% | |
| TTACCATAAATCCTGCTACA+GGG | - | chr5_3:11360298-11360317 | Msa0798620:intron | 35.0% | |
| TCTTGCAAACATCACATCTT+GGG | + | chr5_3:11360334-11360353 | None:intergenic | 35.0% | |
| TTCTTGCAAACATCACATCT+TGG | + | chr5_3:11360335-11360354 | None:intergenic | 35.0% | |
| GCTTCTTAAACATTGAGGTT+GGG | + | chr5_3:11360605-11360624 | None:intergenic | 35.0% | |
| AGCTTCTTAAACATTGAGGT+TGG | + | chr5_3:11360606-11360625 | None:intergenic | 35.0% | |
| GAACAGCTTCTTAAACATTG+AGG | + | chr5_3:11360610-11360629 | None:intergenic | 35.0% | |
| TCTCACTTCTCAAAAATGTG+AGG | - | chr5_3:11360628-11360647 | Msa0798620:intron | 35.0% | |
| CAACTATATCCAACTCATGA+AGG | + | chr5_3:11360729-11360748 | None:intergenic | 35.0% | |
| ! | CTTCATGAGTTGGATATAGT+TGG | - | chr5_3:11360727-11360746 | Msa0798620:CDS | 35.0% |
| !! | GGCATTGAATTTTGGAAGAA+AGG | + | chr5_3:11361062-11361081 | None:intergenic | 35.0% |
| !!! | TGGTTGAAGGCATTGAATTT+TGG | + | chr5_3:11361070-11361089 | None:intergenic | 35.0% |
| !!! | CATGTCATTGTTTTGGTAAG+AGG | + | chr5_3:11361189-11361208 | None:intergenic | 35.0% |
| TATTCTTCCATTACAGATCC+CGG | - | chr5_3:11361269-11361288 | Msa0798620:intron | 35.0% | |
| TCTAGTATTTCATGGTAGAG+AGG | + | chr5_3:11361610-11361629 | None:intergenic | 35.0% | |
| ATAACAGAAAGACAGAAGGA+GGG | + | chr5_3:11361775-11361794 | None:intergenic | 35.0% | |
| TAGGATAACAGAAAGACAGA+AGG | + | chr5_3:11361779-11361798 | None:intergenic | 35.0% | |
| !!! | ACAGCCATTCTTGTTTTGTA+TGG | - | chr5_3:11362091-11362110 | Msa0798620:CDS | 35.0% |
| AAGGCCATACAAAACAAGAA+TGG | + | chr5_3:11362098-11362117 | None:intergenic | 35.0% | |
| TGTTATATGGTTACCTAGGA+AGG | + | chr5_3:11362117-11362136 | None:intergenic | 35.0% | |
| CAGATGTTATATGGTTACCT+AGG | + | chr5_3:11362121-11362140 | None:intergenic | 35.0% | |
| TTATAGGTTATCCCAACTTG+AGG | - | chr5_3:11362352-11362371 | Msa0798620:intron | 35.0% | |
| CAGATTCCTTCTTCAATTTC+TGG | + | chr5_3:11362378-11362397 | None:intergenic | 35.0% | |
| TTAGAATCAGAGCTCTATTC+TGG | - | chr5_3:11362420-11362439 | Msa0798620:CDS | 35.0% | |
| !! | ATTGATGATGATGAAGACGA+AGG | + | chr5_3:11362468-11362487 | None:intergenic | 35.0% |
| GGTCAAATGGATATGATCAA+GGG | + | chr5_3:11362652-11362671 | None:intergenic | 35.0% | |
| CTTGATCATATCCATTTGAC+CGG | - | chr5_3:11362651-11362670 | Msa0798620:CDS | 35.0% | |
| !! | TTTGATTTGAGAGGATGAAG+GGG | + | chr5_3:11362770-11362789 | None:intergenic | 35.0% |
| CAGTTGTCAGATTAATCTGA+TGG | - | chr5_3:11362793-11362812 | Msa0798620:intron | 35.0% | |
| !! | AATCTGATGGTTGATAGTGT+TGG | - | chr5_3:11362806-11362825 | Msa0798620:intron | 35.0% |
| ! | TTCAACGACTGAGTTTTTGT+TGG | - | chr5_3:11362849-11362868 | Msa0798620:intron | 35.0% |
| !!! | AGTTTTGTTGAACAAAGGGT+GGG | + | chr5_3:11363011-11363030 | None:intergenic | 35.0% |
| !!! | AAGTTTTGTTGAACAAAGGG+TGG | + | chr5_3:11363012-11363031 | None:intergenic | 35.0% |
| ATGACTTGATTAGAAGAGCT+AGG | + | chr5_3:11363048-11363067 | None:intergenic | 35.0% | |
| !! | CATTTTGTAGTTATGGGTTG+AGG | + | chr5_3:11363072-11363091 | None:intergenic | 35.0% |
| ! | GGTGAGACATTTTGTAGTTA+TGG | + | chr5_3:11363079-11363098 | None:intergenic | 35.0% |
| AATCTAGTAAAAGGGTAGGA+GGG | + | chr5_3:11363102-11363121 | None:intergenic | 35.0% | |
| TAATCTAGTAAAAGGGTAGG+AGG | + | chr5_3:11363103-11363122 | None:intergenic | 35.0% | |
| CTATCAACACTCTTAACAAC+TGG | - | chr5_3:11363299-11363318 | Msa0798620:five_prime_UTR | 35.0% | |
| TATCTCCAACATGAAAGAAG+TGG | - | chr5_3:11363333-11363352 | Msa0798620:five_prime_UTR | 35.0% | |
| AACTTCCACTTCTTTCATGT+TGG | + | chr5_3:11363341-11363360 | None:intergenic | 35.0% | |
| TCGTCAAGATGAAGTCATAG+AGG | + | chr5_3:11357722-11357741 | None:intergenic | 40.0% | |
| ! | TACCAGACACGTTTTCGATA+AGG | + | chr5_3:11358085-11358104 | None:intergenic | 40.0% |
| TGAAAATATGCCACACAAGC+AGG | + | chr5_3:11358284-11358303 | None:intergenic | 40.0% | |
| ! | TGCTTGTGTGGCATATTTTC+AGG | - | chr5_3:11358283-11358302 | Msa0798620:three_prime_UTR | 40.0% |
| ATTTCAGGAGGGCAATACAA+TGG | - | chr5_3:11358372-11358391 | Msa0798620:exon | 40.0% | |
| AATTGCACTCTCTCTATCAG+AGG | - | chr5_3:11358604-11358623 | Msa0798620:CDS | 40.0% | |
| CTGAAAGGCAAGAAAGTTGT+TGG | - | chr5_3:11358632-11358651 | Msa0798620:CDS | 40.0% | |
| ATCTCATAATGTCTCAGAGG+AGG | - | chr5_3:11358938-11358957 | Msa0798620:intron | 40.0% | |
| !!! | CCTGCTGAATTTTAGCTAGA+AGG | + | chr5_3:11359049-11359068 | None:intergenic | 40.0% |
| ! | CCTTCTAGCTAAAATTCAGC+AGG | - | chr5_3:11359046-11359065 | Msa0798620:intron | 40.0% |
| !! | GTCTTCCTCAAGTTGATCTT+TGG | + | chr5_3:11359090-11359109 | None:intergenic | 40.0% |
| GCTAGTTGCACCTAATAAAG+TGG | - | chr5_3:11359294-11359313 | Msa0798620:intron | 40.0% | |
| GCCTTATCGTCCACTTTATT+AGG | + | chr5_3:11359307-11359326 | None:intergenic | 40.0% | |
| AGTGTAAAGGAAAACAAGGG+GGG | + | chr5_3:11359556-11359575 | None:intergenic | 40.0% | |
| AAATGTCGTCCATGAGAAAG+AGG | + | chr5_3:11359586-11359605 | None:intergenic | 40.0% | |
| CAGTATTGCCATTGTGAAAG+GGG | - | chr5_3:11359680-11359699 | Msa0798620:CDS | 40.0% | |
| ACACAAAACCCCTTTCACAA+TGG | + | chr5_3:11359691-11359710 | None:intergenic | 40.0% | |
| AGCAGGATTTATGGTAAGGA+CGG | + | chr5_3:11360295-11360314 | None:intergenic | 40.0% | |
| CTGTAGCAGGATTTATGGTA+AGG | + | chr5_3:11360299-11360318 | None:intergenic | 40.0% | |
| CTTACCATAAATCCTGCTAC+AGG | - | chr5_3:11360297-11360316 | Msa0798620:intron | 40.0% | |
| TGTGTAAAAGAGTCCCACAT+TGG | - | chr5_3:11360501-11360520 | Msa0798620:intron | 40.0% | |
| GTCCCACATTGGATAACAAA+TGG | - | chr5_3:11360512-11360531 | Msa0798620:intron | 40.0% | |
| !! | GGCCATTTGTTATCCAATGT+GGG | + | chr5_3:11360517-11360536 | None:intergenic | 40.0% |
| !! | AGGCCATTTGTTATCCAATG+TGG | + | chr5_3:11360518-11360537 | None:intergenic | 40.0% |
| ! | CCTGAACATGTGTTTAGAGT+GGG | - | chr5_3:11360535-11360554 | Msa0798620:intron | 40.0% |
| ! | CTGAACATGTGTTTAGAGTG+GGG | - | chr5_3:11360536-11360555 | Msa0798620:intron | 40.0% |
| ! | TGAACATGTGTTTAGAGTGG+GGG | - | chr5_3:11360537-11360556 | Msa0798620:intron | 40.0% |
| AATACTCGAGTATGTTCTGC+TGG | - | chr5_3:11360659-11360678 | Msa0798620:intron | 40.0% | |
| ATACTCGAGTATGTTCTGCT+GGG | - | chr5_3:11360660-11360679 | Msa0798620:intron | 40.0% | |
| ATATATTCTAGTAACCGGCC+TGG | - | chr5_3:11360700-11360719 | Msa0798620:intron | 40.0% | |
| AATTCAATGCCTTCAACCAC+AGG | - | chr5_3:11361071-11361090 | Msa0798620:intron | 40.0% | |
| ATTCAATGCCTTCAACCACA+GGG | - | chr5_3:11361072-11361091 | Msa0798620:intron | 40.0% | |
| GATGAGCTCTATACTCAATG+AGG | + | chr5_3:11361308-11361327 | None:intergenic | 40.0% | |
| AGTATAGAGCTCATCCTTTC+TGG | - | chr5_3:11361313-11361332 | Msa0798620:intron | 40.0% | |
| TTGTTGTAGCTGCGAAAGAA+TGG | - | chr5_3:11361380-11361399 | Msa0798620:intron | 40.0% | |
| ! | ACAACGGGATGGAATGTTTT+GGG | + | chr5_3:11361424-11361443 | None:intergenic | 40.0% |
| ! | AACAACGGGATGGAATGTTT+TGG | + | chr5_3:11361425-11361444 | None:intergenic | 40.0% |
| CCTAATTAGTAACAACGGGA+TGG | + | chr5_3:11361435-11361454 | None:intergenic | 40.0% | |
| CCATCCCGTTGTTACTAATT+AGG | - | chr5_3:11361432-11361451 | Msa0798620:intron | 40.0% | |
| TTTCTAATCTGTGCAGCCAA+AGG | - | chr5_3:11361498-11361517 | Msa0798620:intron | 40.0% | |
| GTGTCTAGACTCAGCAATTA+TGG | - | chr5_3:11361567-11361586 | Msa0798620:intron | 40.0% | |
| GTATTTCATGGTAGAGAGGT+TGG | + | chr5_3:11361606-11361625 | None:intergenic | 40.0% | |
| ! | TGTCTTTCCACCAAAAGCAT+AGG | + | chr5_3:11361673-11361692 | None:intergenic | 40.0% |
| GGAAAGACAAGCACTAAATG+AGG | - | chr5_3:11361684-11361703 | Msa0798620:intron | 40.0% | |
| ! | CACATTCTTTTCTCCCTCAA+TGG | + | chr5_3:11361710-11361729 | None:intergenic | 40.0% |
| GATAACAGAAAGACAGAAGG+AGG | + | chr5_3:11361776-11361795 | None:intergenic | 40.0% | |
| CACCATTTACCTGAAACTAG+AGG | - | chr5_3:11361843-11361862 | Msa0798620:intron | 40.0% | |
| ! | GTCCTCTAGTTTCAGGTAAA+TGG | + | chr5_3:11361848-11361867 | None:intergenic | 40.0% |
| TTGGAAGCAAGGAATTCCTA+CGG | + | chr5_3:11361901-11361920 | None:intergenic | 40.0% | |
| AAGAGTCGAATTTGGAAGCA+AGG | + | chr5_3:11361912-11361931 | None:intergenic | 40.0% | |
| TGGTTATCATGTCTGTGACT+CGG | + | chr5_3:11362039-11362058 | None:intergenic | 40.0% | |
| !! | TTGTTTTGTATGGCCTTCCT+AGG | - | chr5_3:11362101-11362120 | Msa0798620:intron | 40.0% |
| CATGCATTATCTCATGAGCT+AGG | + | chr5_3:11362227-11362246 | None:intergenic | 40.0% | |
| CTCATGAGATAATGCATGCA+TGG | - | chr5_3:11362229-11362248 | Msa0798620:intron | 40.0% | |
| TGCATGATGTTATCAGGGAA+CGG | + | chr5_3:11362277-11362296 | None:intergenic | 40.0% | |
| !! | TCAATTTCTGGCCTCAAGTT+GGG | + | chr5_3:11362366-11362385 | None:intergenic | 40.0% |
| !! | TTCAATTTCTGGCCTCAAGT+TGG | + | chr5_3:11362367-11362386 | None:intergenic | 40.0% |
| TTGAGGCCAGAAATTGAAGA+AGG | - | chr5_3:11362369-11362388 | Msa0798620:intron | 40.0% | |
| AGAAGGAATCTGTCAAGTGT+TGG | - | chr5_3:11362386-11362405 | Msa0798620:intron | 40.0% | |
| TTCTTCGATGATGCAGAACA+AGG | + | chr5_3:11362495-11362514 | None:intergenic | 40.0% | |
| TTGTTCTGCATCATCGAAGA+AGG | - | chr5_3:11362494-11362513 | Msa0798620:intron | 40.0% | |
| TGTTCTGCATCATCGAAGAA+GGG | - | chr5_3:11362495-11362514 | Msa0798620:intron | 40.0% | |
| ! | CTATGGAGATGGATTCAGAT+CGG | - | chr5_3:11362590-11362609 | Msa0798620:intron | 40.0% |
| ! | TATGGAGATGGATTCAGATC+GGG | - | chr5_3:11362591-11362610 | Msa0798620:intron | 40.0% |
| CGGTCAAATGGATATGATCA+AGG | + | chr5_3:11362653-11362672 | None:intergenic | 40.0% | |
| TATGAACCAATGCCTCATCT+TGG | - | chr5_3:11362722-11362741 | Msa0798620:exon | 40.0% | |
| TAACACTCCATACCAAGATG+AGG | + | chr5_3:11362737-11362756 | None:intergenic | 40.0% | |
| ! | TTGATTTGAGAGGATGAAGG+GGG | + | chr5_3:11362769-11362788 | None:intergenic | 40.0% |
| ! | CGACTGAGTTTTTGTTGGAT+AGG | - | chr5_3:11362854-11362873 | Msa0798620:intron | 40.0% |
| ATCTAGTAAAAGGGTAGGAG+GGG | + | chr5_3:11363101-11363120 | None:intergenic | 40.0% | |
| TCAATTCAGGAACACCCAGT+AGG | + | chr5_3:11357864-11357883 | None:intergenic | 45.0% | |
| CTCCTTATCGAAAACGTGTC+TGG | - | chr5_3:11358080-11358099 | Msa0798620:three_prime_UTR | 45.0% | |
| GTTAGTGTCCATGTTGTGTC+CGG | - | chr5_3:11358154-11358173 | Msa0798620:three_prime_UTR | 45.0% | |
| TGTAAACACCGGACACAACA+TGG | + | chr5_3:11358165-11358184 | None:intergenic | 45.0% | |
| ! | TGTTTTGTGACCTGCTTGTG+TGG | - | chr5_3:11358271-11358290 | Msa0798620:three_prime_UTR | 45.0% |
| GGGCAATACAATGGCAAACA+TGG | - | chr5_3:11358381-11358400 | Msa0798620:CDS | 45.0% | |
| AATTGTGGTGAACTGAGTGC+AGG | - | chr5_3:11358541-11358560 | Msa0798620:CDS | 45.0% | |
| CTGAGTGCAGGATGATTTGA+CGG | - | chr5_3:11358553-11358572 | Msa0798620:CDS | 45.0% | |
| CTATCAGAGGAGGATCTGAA+AGG | - | chr5_3:11358617-11358636 | Msa0798620:CDS | 45.0% | |
| GACGAGGAAGATGAGAATGT+TGG | - | chr5_3:11358999-11359018 | Msa0798620:CDS | 45.0% | |
| !! | CCTCAAGTTGATCTTTGGCA+CGG | + | chr5_3:11359085-11359104 | None:intergenic | 45.0% |
| AGAGAATCTTTGCCATGTCG+AGG | + | chr5_3:11359161-11359180 | None:intergenic | 45.0% | |
| TTTCTCTGCAGAATCTGTGC+TGG | - | chr5_3:11359972-11359991 | Msa0798620:intron | 45.0% | |
| TGATTGGAAGATGGCAAGCA+TGG | + | chr5_3:11360073-11360092 | None:intergenic | 45.0% | |
| TCTCCCTGTAGCAGGATTTA+TGG | + | chr5_3:11360304-11360323 | None:intergenic | 45.0% | |
| GCTGCAATGTACATATGCTC+TGG | - | chr5_3:11360460-11360479 | Msa0798620:intron | 45.0% | |
| GCCTGAACATGTGTTTAGAG+TGG | - | chr5_3:11360534-11360553 | Msa0798620:intron | 45.0% | |
| CCCACTCTAAACACATGTTC+AGG | + | chr5_3:11360538-11360557 | None:intergenic | 45.0% | |
| CTAACACAACCCCACAAAAC+CGG | + | chr5_3:11360581-11360600 | None:intergenic | 45.0% | |
| ! | CAATAACTGGTCTGGTACTG+TGG | - | chr5_3:11360768-11360787 | Msa0798620:CDS | 45.0% |
| TTCATACTCCCTGTGGTTGA+AGG | + | chr5_3:11361083-11361102 | None:intergenic | 45.0% | |
| TGTTGCATTCATACTCCCTG+TGG | + | chr5_3:11361090-11361109 | None:intergenic | 45.0% | |
| ! | TGCAAGCAACAAGTGTTGTG+CGG | - | chr5_3:11361232-11361251 | Msa0798620:intron | 45.0% |
| GAATTAGCCGGGATCTGTAA+TGG | + | chr5_3:11361279-11361298 | None:intergenic | 45.0% | |
| TTGTAGCTGCGAAAGAATGG+AGG | - | chr5_3:11361383-11361402 | Msa0798620:intron | 45.0% | |
| ! | GCAGCAAGTTCCTATGCTTT+TGG | - | chr5_3:11361660-11361679 | Msa0798620:intron | 45.0% |
| ! | GCAAGTTCCTATGCTTTTGG+TGG | - | chr5_3:11361663-11361682 | Msa0798620:intron | 45.0% |
| AGCACTAAATGAGGCCATTG+AGG | - | chr5_3:11361693-11361712 | Msa0798620:intron | 45.0% | |
| GCACTAAATGAGGCCATTGA+GGG | - | chr5_3:11361694-11361713 | Msa0798620:intron | 45.0% | |
| ! | AAGCAGAGTCCTCTAGTTTC+AGG | + | chr5_3:11361855-11361874 | None:intergenic | 45.0% |
| AGAAAACCAAGTATAGGGGC+AGG | - | chr5_3:11362010-11362029 | Msa0798620:CDS | 45.0% | |
| TGCTTTCACAATCTAGCGCT+TGG | - | chr5_3:11362139-11362158 | Msa0798620:intron | 45.0% | |
| AGATAATGCATGCATGGCTC+AGG | - | chr5_3:11362235-11362254 | Msa0798620:intron | 45.0% | |
| !! | GTCAAGTGTTGGCTCATATG+TGG | - | chr5_3:11362397-11362416 | Msa0798620:intron | 45.0% |
| TCAGAGCTCTATTCTGGATC+TGG | - | chr5_3:11362426-11362445 | Msa0798620:CDS | 45.0% | |
| CAGAGCTCTATTCTGGATCT+GGG | - | chr5_3:11362427-11362446 | Msa0798620:CDS | 45.0% | |
| ! | GATGATGATGAAGACGAAGG+CGG | + | chr5_3:11362465-11362484 | None:intergenic | 45.0% |
| TTCGATGATGCAGAACAAGG+CGG | + | chr5_3:11362492-11362511 | None:intergenic | 45.0% | |
| ! | GTGAGGTATCTGACTCAATC+TGG | + | chr5_3:11362566-11362585 | None:intergenic | 45.0% |
| CGATCTGAATCCATCTCCAT+AGG | + | chr5_3:11362592-11362611 | None:intergenic | 45.0% | |
| TACCAGGCGGTACTTAAGTA+TGG | - | chr5_3:11362615-11362634 | Msa0798620:intron | 45.0% | |
| ACCAGGCGGTACTTAAGTAT+GGG | - | chr5_3:11362616-11362635 | Msa0798620:intron | 45.0% | |
| ACCAATGCCTCATCTTGGTA+TGG | - | chr5_3:11362727-11362746 | Msa0798620:exon | 45.0% | |
| TCCATACCAAGATGAGGCAT+TGG | + | chr5_3:11362731-11362750 | None:intergenic | 45.0% | |
| !! | GGTTGATAGTGTTGGTCTCT+CGG | - | chr5_3:11362814-11362833 | Msa0798620:intron | 45.0% |
| TCTAGTAAAAGGGTAGGAGG+GGG | + | chr5_3:11363100-11363119 | None:intergenic | 45.0% | |
| GGTGTGTGAGAACATCTTTG+AGG | - | chr5_3:11363138-11363157 | Msa0798620:intron | 45.0% | |
| GGATCTGAACAAGCTAGTGA+AGG | - | chr5_3:11363159-11363178 | Msa0798620:intron | 45.0% | |
| !!! | AATATATGTTTTTTTTTTAT+AGG | - | chr5_3:11362336-11362355 | Msa0798620:intron | 5.0% |
| GTCTGGTATCCGACATGTGT+TGG | - | chr5_3:11358097-11358116 | Msa0798620:three_prime_UTR | 50.0% | |
| TGCACTCTCTCTATCAGAGG+AGG | - | chr5_3:11358607-11358626 | Msa0798620:CDS | 50.0% | |
| CCGTGCCAAAGATCAACTTG+AGG | - | chr5_3:11359082-11359101 | Msa0798620:intron | 50.0% | |
| AGGAAGACGAGCAACTTGCA+AGG | - | chr5_3:11359102-11359121 | Msa0798620:intron | 50.0% | |
| GGAAGACGAGCAACTTGCAA+GGG | - | chr5_3:11359103-11359122 | Msa0798620:intron | 50.0% | |
| GAATCTTTGCCATGTCGAGG+AGG | + | chr5_3:11359158-11359177 | None:intergenic | 50.0% | |
| AATCCTGGTGGAAAGAGGTG+GGG | + | chr5_3:11359197-11359216 | None:intergenic | 50.0% | |
| GAATCCTGGTGGAAAGAGGT+GGG | + | chr5_3:11359198-11359217 | None:intergenic | 50.0% | |
| TGAATCCTGGTGGAAAGAGG+TGG | + | chr5_3:11359199-11359218 | None:intergenic | 50.0% | |
| ACCTCTTTCCACCAGGATTC+AGG | - | chr5_3:11359198-11359217 | Msa0798620:CDS | 50.0% | |
| ACCTGAATCCTGGTGGAAAG+AGG | + | chr5_3:11359202-11359221 | None:intergenic | 50.0% | |
| GCTGGATGCAATGCTGAGAT+TGG | - | chr5_3:11359990-11360009 | Msa0798620:intron | 50.0% | |
| ! | TGCAATGCTGAGATTGGCCA+TGG | - | chr5_3:11359996-11360015 | Msa0798620:intron | 50.0% |
| !! | GCATGGCATTGGAAGCATTG+TGG | + | chr5_3:11360056-11360075 | None:intergenic | 50.0% |
| GAAGATGGCAAGCATGGCAT+TGG | + | chr5_3:11360067-11360086 | None:intergenic | 50.0% | |
| GTAAGGACGGTTGCTAGACA+TGG | + | chr5_3:11360282-11360301 | None:intergenic | 50.0% | |
| !! | ACCTCACAAGCCGGTTTTGT+GGG | - | chr5_3:11360568-11360587 | Msa0798620:intron | 50.0% |
| !! | CGGTTTTGTGGGGTTGTGTT+AGG | - | chr5_3:11360579-11360598 | Msa0798620:intron | 50.0% |
| TCCAACTCATGAAGGGATCC+AGG | + | chr5_3:11360721-11360740 | None:intergenic | 50.0% | |
| ATGAGGCCAGCTGAATTAGC+CGG | + | chr5_3:11361291-11361310 | None:intergenic | 50.0% | |
| CTTTCGCAGCTACAACAACG+AGG | + | chr5_3:11361378-11361397 | None:intergenic | 50.0% | |
| AGGAATTCCTACGGTGGTGA+CGG | + | chr5_3:11361892-11361911 | None:intergenic | 50.0% | |
| GAAGCAAGGAATTCCTACGG+TGG | + | chr5_3:11361898-11361917 | None:intergenic | 50.0% | |
| ACGGGTCAGTCTATAAGGCT+TGG | + | chr5_3:11362059-11362078 | None:intergenic | 50.0% | |
| CATCGACGGGTCAGTCTATA+AGG | + | chr5_3:11362064-11362083 | None:intergenic | 50.0% | |
| CATGCATGGCTCAGGCTTAA+AGG | - | chr5_3:11362243-11362262 | Msa0798620:intron | 50.0% | |
| TCAGATACCTCACCAGCCTA+TGG | - | chr5_3:11362573-11362592 | Msa0798620:intron | 50.0% | |
| CTGAATCCATCTCCATAGGC+TGG | + | chr5_3:11362588-11362607 | None:intergenic | 50.0% | |
| TGGATTCAGATCGGGTTACC+AGG | - | chr5_3:11362599-11362618 | Msa0798620:intron | 50.0% | |
| ATTCAGATCGGGTTACCAGG+CGG | - | chr5_3:11362602-11362621 | Msa0798620:intron | 50.0% | |
| ! | ACTGGTTCTCCTCCTCGACA+TGG | - | chr5_3:11359146-11359165 | Msa0798620:intron | 55.0% |
| TAAGTTGCATGGGAGGGGTC+TGG | - | chr5_3:11360027-11360046 | Msa0798620:intron | 55.0% | |
| GTGATGCTTCTCCCTGTAGC+AGG | + | chr5_3:11360312-11360331 | None:intergenic | 55.0% | |
| GCAATCCTCACCTCACAAGC+CGG | - | chr5_3:11360559-11360578 | Msa0798620:intron | 55.0% | |
| !! | CAAAACCGGCTTGTGAGGTG+AGG | + | chr5_3:11360567-11360586 | None:intergenic | 55.0% |
| !! | CACCTCACAAGCCGGTTTTG+TGG | - | chr5_3:11360567-11360586 | Msa0798620:intron | 55.0% |
| !! | CCTCACAAGCCGGTTTTGTG+GGG | - | chr5_3:11360569-11360588 | Msa0798620:intron | 55.0% |
| ACTCATGAAGGGATCCAGGC+CGG | + | chr5_3:11360717-11360736 | None:intergenic | 55.0% | |
| GCCTGGATCCCTTCATGAGT+TGG | - | chr5_3:11360717-11360736 | Msa0798620:CDS | 55.0% | |
| CAGATCCCGGCTAATTCAGC+TGG | - | chr5_3:11361282-11361301 | Msa0798620:intron | 55.0% | |
| TGAGGCCAGCTGAATTAGCC+GGG | + | chr5_3:11361290-11361309 | None:intergenic | 55.0% | |
| TGCTGTCGAGCTCATGCGTT+GGG | + | chr5_3:11361353-11361372 | None:intergenic | 55.0% | |
| GAACAAACCGTCACCACCGT+AGG | - | chr5_3:11361882-11361901 | Msa0798620:CDS | 55.0% | |
| ! | TGGCTGTCACTTCGCATCGA+CGG | + | chr5_3:11362078-11362097 | None:intergenic | 55.0% |
| ACCTCACCAGCCTATGGAGA+TGG | - | chr5_3:11362579-11362598 | Msa0798620:intron | 55.0% | |
| TCCATCTCCATAGGCTGGTG+AGG | + | chr5_3:11362583-11362602 | None:intergenic | 55.0% | |
| ! | GCCCATACTTAAGTACCGCC+TGG | + | chr5_3:11362620-11362639 | None:intergenic | 55.0% |
| GAGGATGAAGGGGGCTAGAT+GGG | + | chr5_3:11362760-11362779 | None:intergenic | 55.0% | |
| AGAGGATGAAGGGGGCTAGA+TGG | + | chr5_3:11362761-11362780 | None:intergenic | 55.0% | |
| GGTGGAAAGAGGTGGGGAGA+AGG | + | chr5_3:11359191-11359210 | None:intergenic | 60.0% | |
| TCTCCCCACCTCTTTCCACC+AGG | - | chr5_3:11359191-11359210 | Msa0798620:CDS | 60.0% | |
| !! | CCCCACAAAACCGGCTTGTG+AGG | + | chr5_3:11360572-11360591 | None:intergenic | 60.0% |
| GTGCTGTCGAGCTCATGCGT+TGG | + | chr5_3:11361354-11361373 | None:intergenic | 60.0% | |
| CGGTGTCCTGCCCCTATACT+TGG | + | chr5_3:11362019-11362038 | None:intergenic | 60.0% | |
| ! | GGCTGTCACTTCGCATCGAC+GGG | + | chr5_3:11362077-11362096 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 11357679 | 11363388 | 11357679 | ID=Msa0798620;Name=Msa0798620 |
| chr5_3 | mRNA | 11357679 | 11363388 | 11357679 | ID=Msa0798620-mRNA-1;Parent=Msa0798620;Name=Msa0798620-mRNA-1;_AED=0.35;_eAED=0.35;_QI=251|1|1|1|0.90|0.91|12|699|525 |
| chr5_3 | exon | 11357679 | 11358709 | 11357679 | ID=Msa0798620-mRNA-1:exon:4724;Parent=Msa0798620-mRNA-1 |
| chr5_3 | exon | 11358803 | 11358861 | 11358803 | ID=Msa0798620-mRNA-1:exon:4723;Parent=Msa0798620-mRNA-1 |
| chr5_3 | exon | 11358945 | 11359063 | 11358945 | ID=Msa0798620-mRNA-1:exon:4722;Parent=Msa0798620-mRNA-1 |
| chr5_3 | exon | 11359168 | 11359230 | 11359168 | ID=Msa0798620-mRNA-1:exon:4721;Parent=Msa0798620-mRNA-1 |
| chr5_3 | exon | 11359341 | 11359553 | 11359341 | ID=Msa0798620-mRNA-1:exon:4720;Parent=Msa0798620-mRNA-1 |
| chr5_3 | exon | 11359663 | 11359782 | 11359663 | ID=Msa0798620-mRNA-1:exon:4719;Parent=Msa0798620-mRNA-1 |
| chr5_3 | exon | 11360709 | 11360792 | 11360709 | ID=Msa0798620-mRNA-1:exon:4718;Parent=Msa0798620-mRNA-1 |
| chr5_3 | exon | 11360964 | 11361084 | 11360964 | ID=Msa0798620-mRNA-1:exon:4717;Parent=Msa0798620-mRNA-1 |
| chr5_3 | exon | 11361848 | 11362112 | 11361848 | ID=Msa0798620-mRNA-1:exon:4716;Parent=Msa0798620-mRNA-1 |
| chr5_3 | exon | 11362414 | 11362504 | 11362414 | ID=Msa0798620-mRNA-1:exon:4715;Parent=Msa0798620-mRNA-1 |
| chr5_3 | exon | 11362627 | 11362762 | 11362627 | ID=Msa0798620-mRNA-1:exon:4714;Parent=Msa0798620-mRNA-1 |
| chr5_3 | exon | 11363163 | 11363388 | 11363163 | ID=Msa0798620-mRNA-1:exon:4713;Parent=Msa0798620-mRNA-1 |
| chr5_3 | five_prime_UTR | 11363163 | 11363388 | 11363163 | ID=Msa0798620-mRNA-1:five_prime_utr;Parent=Msa0798620-mRNA-1 |
| chr5_3 | five_prime_UTR | 11362738 | 11362762 | 11362738 | ID=Msa0798620-mRNA-1:five_prime_utr;Parent=Msa0798620-mRNA-1 |
| chr5_3 | CDS | 11362627 | 11362737 | 11362627 | ID=Msa0798620-mRNA-1:cds;Parent=Msa0798620-mRNA-1 |
| chr5_3 | CDS | 11362414 | 11362504 | 11362414 | ID=Msa0798620-mRNA-1:cds;Parent=Msa0798620-mRNA-1 |
| chr5_3 | CDS | 11361848 | 11362112 | 11361848 | ID=Msa0798620-mRNA-1:cds;Parent=Msa0798620-mRNA-1 |
| chr5_3 | CDS | 11360964 | 11361084 | 11360964 | ID=Msa0798620-mRNA-1:cds;Parent=Msa0798620-mRNA-1 |
| chr5_3 | CDS | 11360709 | 11360792 | 11360709 | ID=Msa0798620-mRNA-1:cds;Parent=Msa0798620-mRNA-1 |
| chr5_3 | CDS | 11359663 | 11359782 | 11359663 | ID=Msa0798620-mRNA-1:cds;Parent=Msa0798620-mRNA-1 |
| chr5_3 | CDS | 11359341 | 11359553 | 11359341 | ID=Msa0798620-mRNA-1:cds;Parent=Msa0798620-mRNA-1 |
| chr5_3 | CDS | 11359168 | 11359230 | 11359168 | ID=Msa0798620-mRNA-1:cds;Parent=Msa0798620-mRNA-1 |
| chr5_3 | CDS | 11358945 | 11359063 | 11358945 | ID=Msa0798620-mRNA-1:cds;Parent=Msa0798620-mRNA-1 |
| chr5_3 | CDS | 11358803 | 11358861 | 11358803 | ID=Msa0798620-mRNA-1:cds;Parent=Msa0798620-mRNA-1 |
| chr5_3 | CDS | 11358378 | 11358709 | 11358378 | ID=Msa0798620-mRNA-1:cds;Parent=Msa0798620-mRNA-1 |
| chr5_3 | three_prime_UTR | 11357679 | 11358377 | 11357679 | ID=Msa0798620-mRNA-1:three_prime_utr;Parent=Msa0798620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
