AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0798710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0798710 MtrunA17_Chr5g0403361 87.654 405 24 1 1 379 241 645 0.0 723
Msa0798710 MtrunA17_Chr5g0403371 64.557 237 10 2 379 541 185 421 2.08e-84 273
Msa0798710 MtrunA17_Chr8g0373711 35.766 274 81 7 356 541 151 417 2.21e-34 137
Msa0798710 MtrunA17_Chr8g0368871 28.188 149 104 1 220 365 74 222 4.23e-18 83.6
Msa0798710 MtrunA17_Chr8g0368891 28.966 145 100 1 220 361 515 659 1.84e-17 85.9
Msa0798710 MtrunA17_Chr1g0210801 25.568 176 118 1 185 360 217 379 1.77e-15 79.3
Msa0798710 MtrunA17_Chr3g0091741 22.222 369 233 8 6 347 87 428 3.56e-15 78.6
Msa0798710 MtrunA17_Chr3g0091741 29.286 140 87 2 240 373 140 273 1.19e-11 67.4
Msa0798710 MtrunA17_Chr3g0133151 22.826 276 175 7 111 352 24 295 2.21e-14 75.9
Msa0798710 MtrunA17_Chr2g0297211 26.344 186 124 2 162 347 341 513 5.10e-14 75.5
Msa0798710 MtrunA17_Chr6g0449581 23.902 205 138 3 163 362 247 438 2.31e-13 72.8
Msa0798710 MtrunA17_Chr8g0393001 21.569 204 146 3 133 335 58 248 2.64e-13 72.4
Msa0798710 MtrunA17_Chr3g0093791 22.566 226 153 2 147 350 312 537 3.46e-13 72.4
Msa0798710 MtrunA17_Chr7g0231941 25.604 207 136 7 145 347 88 280 3.99e-13 72.4
Msa0798710 MtrunA17_Chr6g0481621 23.647 351 224 10 10 341 228 553 4.45e-13 72.0
Msa0798710 MtrunA17_Chr6g0481621 27.642 123 89 0 238 360 275 397 9.30e-11 64.3
Msa0798710 MtrunA17_Chr6g0479541 24.128 344 210 8 10 348 228 525 5.16e-13 71.6
Msa0798710 MtrunA17_Chr6g0482561 22.946 353 224 9 10 341 45 370 5.46e-13 70.9
Msa0798710 MtrunA17_Chr6g0471481 29.000 100 71 0 244 343 114 213 5.96e-13 69.7
Msa0798710 MtrunA17_Chr6g0471481 26.347 167 110 2 174 340 92 245 7.16e-13 69.3
Msa0798710 MtrunA17_Chr6g0481751 28.926 121 83 1 233 350 234 354 1.09e-12 70.5
Msa0798710 MtrunA17_Chr1g0182521 27.811 169 110 4 193 353 453 617 1.48e-12 70.5
Msa0798710 MtrunA17_Chr4g0048611 24.815 270 148 5 245 459 350 619 1.62e-12 70.5
Msa0798710 MtrunA17_Chr5g0403381 50.725 69 31 2 473 541 394 459 2.00e-12 70.1
Msa0798710 MtrunA17_Chr8g0365781 22.115 208 148 2 141 348 736 929 2.31e-12 70.1
Msa0798710 MtrunA17_Chr5g0434451 24.757 206 137 3 144 347 196 385 2.42e-12 69.7
Msa0798710 MtrunA17_Chr5g0412071 29.412 136 88 3 249 382 461 590 2.45e-12 69.7
Msa0798710 MtrunA17_Chr5g0412071 24.873 197 144 2 155 347 83 279 2.53e-12 69.7
Msa0798710 MtrunA17_Chr5g0442231 22.388 268 167 6 109 352 44 294 3.25e-12 69.3
Msa0798710 MtrunA17_Chr2g0296811 27.011 174 114 3 174 347 44 204 3.71e-12 65.9
Msa0798710 MtrunA17_Chr3g0125131 24.434 221 151 5 131 350 52 257 3.80e-12 68.6
Msa0798710 MtrunA17_Chr3g0136851 23.214 224 151 2 145 347 101 324 3.99e-12 69.3
Msa0798710 MtrunA17_Chr3g0136851 23.585 212 140 2 170 359 230 441 6.99e-11 65.5
Msa0798710 MtrunA17_Chr3g0136851 23.695 249 163 2 165 391 400 643 8.10e-11 65.1
Msa0798710 MtrunA17_Chr8g0392911 28.205 156 101 3 193 343 376 525 4.30e-12 68.9
Msa0798710 MtrunA17_Chr6g0471491 28.676 136 97 0 221 356 56 191 4.43e-12 66.2
Msa0798710 MtrunA17_Chr6g0473381 22.563 359 230 10 10 347 26 357 5.15e-12 67.8
Msa0798710 MtrunA17_Chr7g0276351 32.075 106 72 0 242 347 166 271 5.49e-12 68.2
Msa0798710 MtrunA17_Chr6g0473341 26.923 130 91 1 218 347 266 391 7.41e-12 67.8
Msa0798710 MtrunA17_Chr6g0473031 25.862 174 116 2 174 347 280 440 8.07e-12 67.8
Msa0798710 MtrunA17_Chr6g0473241 26.923 130 91 1 218 347 266 391 8.99e-12 67.8
Msa0798710 MtrunA17_Chr6g0482991 25.000 168 113 3 185 352 31 185 1.18e-11 63.9
Msa0798710 MtrunA17_Chr5g0396041 23.256 172 119 1 170 341 436 594 1.19e-11 67.8
Msa0798710 MtrunA17_Chr2g0284291 23.129 294 187 8 78 347 130 408 1.31e-11 67.4
Msa0798710 MtrunA17_Chr6g0481601 24.878 205 135 4 170 374 255 440 1.36e-11 67.0
Msa0798710 MtrunA17_Chr7g0257471 25.281 178 120 2 170 347 483 647 1.55e-11 67.4
Msa0798710 MtrunA17_Chr6g0478241 30.928 97 67 0 245 341 12 108 1.65e-11 62.0
Msa0798710 MtrunA17_Chr6g0482601 23.362 351 225 9 10 341 118 443 1.75e-11 66.6
Msa0798710 MtrunA17_Chr6g0482821 23.362 351 225 9 10 341 209 534 1.85e-11 66.6
Msa0798710 MtrunA17_Chr8g0375231 29.060 117 83 0 224 340 220 336 2.00e-11 67.0
Msa0798710 MtrunA17_Chr1g0171281 25.424 177 119 2 174 350 267 430 2.21e-11 66.2
Msa0798710 MtrunA17_Chr1g0171281 29.915 117 82 0 245 361 255 371 3.91e-11 65.5
Msa0798710 MtrunA17_Chr7g0215561 25.131 191 130 2 170 360 411 588 2.36e-11 66.6
Msa0798710 MtrunA17_Chr1g0176791 26.705 176 112 3 176 347 831 993 2.56e-11 66.6
Msa0798710 MtrunA17_Chr4g0009441 20.476 210 144 3 161 347 84 293 2.65e-11 65.9
Msa0798710 MtrunA17_Chr1g0160881 31.008 129 84 1 245 373 404 527 3.18e-11 66.2
Msa0798710 MtrunA17_Chr5g0418011 48.750 80 31 4 463 540 59 130 3.46e-11 64.7
Msa0798710 MtrunA17_Chr8g0391651 22.705 207 138 2 168 352 480 686 3.87e-11 65.9
Msa0798710 MtrunA17_Chr7g0214351 25.131 191 130 3 170 360 412 589 5.33e-11 65.5
Msa0798710 MtrunA17_Chr4g0033981 22.460 187 132 1 170 356 352 525 5.67e-11 65.1
Msa0798710 MtrunA17_Chr4g0019851 27.068 133 93 1 240 368 316 448 5.99e-11 65.1
Msa0798710 MtrunA17_Chr8g0359551 28.767 146 86 2 216 356 358 490 6.96e-11 65.1
Msa0798710 MtrunA17_Chr1g0203271 24.000 200 142 3 164 355 264 461 8.41e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0798710 AT5G66631.1 49.758 414 166 5 1 379 241 647 4.20e-139 417
Msa0798710 AT1G18900.4 22.650 234 159 2 147 358 336 569 7.12e-15 78.6
Msa0798710 AT1G18900.2 22.650 234 159 2 147 358 336 569 7.12e-15 78.6
Msa0798710 AT1G18900.1 22.650 234 159 2 147 358 336 569 7.12e-15 78.6
Msa0798710 AT1G18900.3 22.650 234 159 2 147 358 336 569 8.99e-15 78.2
Msa0798710 AT1G74750.2 20.979 286 186 3 115 360 281 566 6.02e-14 75.5
Msa0798710 AT1G74750.1 20.979 286 186 3 115 360 281 566 6.02e-14 75.5
Msa0798710 AT1G74750.4 20.979 286 186 3 115 360 281 566 6.02e-14 75.5
Msa0798710 AT1G74750.3 20.979 286 186 3 115 360 281 566 6.02e-14 75.5
Msa0798710 AT5G02860.1 23.256 215 146 3 148 359 249 447 7.00e-14 75.1
Msa0798710 AT5G02860.4 23.256 215 146 3 148 359 249 447 7.00e-14 75.1
Msa0798710 AT5G02860.2 23.256 215 146 3 148 359 249 447 7.00e-14 75.1
Msa0798710 AT5G02860.5 23.256 215 146 3 148 359 249 447 7.00e-14 75.1
Msa0798710 AT5G02860.3 23.256 215 146 3 148 359 249 447 7.00e-14 75.1
Msa0798710 AT2G17140.1 22.642 371 231 9 4 347 109 450 1.57e-13 74.3
Msa0798710 AT2G17140.2 22.642 371 231 9 4 347 109 450 1.57e-13 74.3
Msa0798710 AT3G22670.1 21.053 285 165 5 128 352 118 402 2.13e-13 73.2
Msa0798710 AT4G11690.2 21.370 365 206 9 8 352 207 510 2.29e-13 73.2
Msa0798710 AT4G11690.1 20.548 365 209 8 8 352 234 537 2.47e-13 73.2
Msa0798710 AT4G01400.1 23.894 226 149 2 145 347 54 279 3.10e-13 72.4
Msa0798710 AT5G61990.1 32.759 116 72 1 220 335 630 739 8.04e-13 72.0
Msa0798710 AT3G16890.2 26.577 222 149 3 139 360 296 503 9.38e-13 71.2
Msa0798710 AT3G16890.1 26.577 222 149 3 139 360 425 632 1.02e-12 71.2
Msa0798710 AT1G12700.1 24.022 179 123 2 174 352 297 462 1.04e-12 71.2
Msa0798710 AT1G12700.3 24.022 179 123 2 174 352 313 478 1.09e-12 71.2
Msa0798710 AT1G12700.2 24.022 179 123 2 174 352 313 478 1.09e-12 71.2
Msa0798710 AT3G18110.1 25.112 223 136 2 170 365 362 580 1.51e-12 71.2
Msa0798710 AT1G03560.1 21.154 208 151 1 155 362 132 326 1.80e-12 70.5
Msa0798710 AT1G05670.1 24.359 312 198 8 152 460 294 570 3.57e-12 69.7
Msa0798710 AT1G05670.1 23.153 203 134 1 170 350 486 688 6.62e-11 65.5
Msa0798710 AT1G05670.2 24.359 312 198 8 152 460 294 570 3.57e-12 69.7
Msa0798710 AT1G05670.2 23.153 203 134 1 170 350 486 688 6.62e-11 65.5
Msa0798710 AT1G05670.3 24.359 312 198 8 152 460 294 570 3.57e-12 69.7
Msa0798710 AT1G05670.3 23.153 203 134 1 170 350 486 688 6.62e-11 65.5
Msa0798710 AT5G06400.1 24.691 243 156 5 133 350 146 386 4.00e-12 69.7
Msa0798710 AT5G18390.1 22.979 235 157 3 132 342 67 301 5.31e-12 68.6
Msa0798710 AT2G35130.3 24.000 200 137 4 181 380 232 416 6.32e-12 68.6
Msa0798710 AT2G01390.1 21.622 222 161 2 140 361 87 295 6.61e-12 68.6
Msa0798710 AT2G35130.1 24.000 200 137 4 181 380 235 419 6.69e-12 68.6
Msa0798710 AT2G35130.2 23.041 217 152 4 181 397 257 458 7.57e-12 68.6
Msa0798710 AT2G02150.1 22.034 236 169 5 139 365 109 338 7.63e-12 68.6
Msa0798710 AT2G02150.2 22.034 236 169 5 139 365 109 338 7.63e-12 68.6
Msa0798710 AT1G63130.1 28.571 112 80 0 245 356 453 564 1.20e-11 67.8
Msa0798710 AT1G63130.2 28.571 112 80 0 245 356 453 564 1.20e-11 67.8
Msa0798710 AT1G13040.2 25.258 194 130 3 155 348 306 484 1.28e-11 67.4
Msa0798710 AT1G13040.1 25.258 194 130 3 155 348 306 484 1.28e-11 67.4
Msa0798710 AT1G77360.2 23.661 224 155 4 131 353 53 261 1.66e-11 67.0
Msa0798710 AT1G02060.1 26.190 210 137 6 145 350 71 266 2.08e-11 67.4
Msa0798710 AT1G62670.2 26.736 288 167 11 237 513 307 561 2.16e-11 67.0
Msa0798710 AT1G62670.2 26.549 113 83 0 244 356 452 564 3.86e-11 66.2
Msa0798710 AT1G62670.1 26.736 288 167 11 237 513 307 561 2.16e-11 67.0
Msa0798710 AT1G62670.1 26.549 113 83 0 244 356 452 564 3.86e-11 66.2
Msa0798710 AT1G62930.1 28.571 112 80 0 245 356 452 563 2.23e-11 67.0
Msa0798710 AT1G63400.1 27.500 120 86 1 238 356 449 568 2.38e-11 67.0
Msa0798710 AT5G18475.1 22.170 212 141 4 148 352 62 256 2.56e-11 66.6
Msa0798710 AT2G32630.1 21.429 378 225 9 3 347 255 593 2.93e-11 66.6
Msa0798710 AT5G61400.1 35.294 102 66 0 242 343 428 529 3.13e-11 66.6
Msa0798710 AT1G77340.1 21.226 212 147 3 155 350 40 247 3.34e-11 65.9
Msa0798710 AT3G22470.1 30.769 104 72 0 244 347 336 439 3.44e-11 66.2
Msa0798710 AT4G20090.2 22.443 352 224 11 10 356 225 532 3.65e-11 66.2
Msa0798710 AT4G20090.1 22.443 352 224 11 10 356 225 532 3.65e-11 66.2
Msa0798710 AT3G62470.1 21.429 224 145 6 144 341 163 381 3.86e-11 66.2
Msa0798710 AT1G77360.1 23.661 224 155 4 131 353 89 297 3.92e-11 65.9
Msa0798710 AT5G14820.1 21.097 237 156 6 131 341 149 380 3.96e-11 66.2
Msa0798710 AT5G01110.1 24.157 178 122 3 170 347 300 464 5.02e-11 65.9
Msa0798710 AT5G01110.2 24.157 178 122 3 170 347 328 492 6.36e-11 65.9
Msa0798710 AT2G06000.1 28.221 163 111 4 192 350 139 299 8.15e-11 65.1
Msa0798710 AT2G06000.2 28.221 163 111 4 192 350 139 299 8.15e-11 65.1
Msa0798710 AT3G62540.1 21.429 224 145 6 144 341 163 381 8.16e-11 65.1
Msa0798710 AT1G62910.1 22.886 201 133 1 170 348 113 313 8.76e-11 65.1
Msa0798710 AT3G53700.1 25.000 152 111 1 217 365 496 647 9.05e-11 65.1

Find 118 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGAAAATGTTTGGATATC+TGG 0.170597 5_3:-11581811 None:intergenic
CAAAATCTGGCTCTTATAAT+TGG 0.262266 5_3:+11583793 Msa0798710:CDS
TTTGAAGATATGAAGAATTC+TGG 0.266472 5_3:+11581991 Msa0798710:CDS
GTCTATGAGTATGCTGAAAA+TGG 0.278284 5_3:+11584192 Msa0798710:CDS
AAAGTCAATGATTAACCTTA+TGG 0.297432 5_3:-11581603 None:intergenic
CTGTGTGGAATTTCTTCTGC+TGG 0.310260 5_3:+11581438 Msa0798710:CDS
TTGGCTGGATCCGCGGTCTT+TGG 0.315039 5_3:+11581301 Msa0798710:CDS
GAAGATGGTTGATCAAGTTT+TGG 0.326422 5_3:-11583748 None:intergenic
ACCCTTGTTAGTTCAAAGTT+TGG 0.344284 5_3:+11583637 Msa0798710:CDS
GTTAATGAGATGCAAGTTGA+TGG 0.346251 5_3:+11581056 Msa0798710:CDS
TCACAATGTGATCATGTAGA+TGG 0.351608 5_3:+11581263 Msa0798710:CDS
GCATTAGACCTGAAAATGTT+TGG 0.360031 5_3:-11581819 None:intergenic
ATGTCTCTGTGGATTATTCT+TGG 0.369404 5_3:-11584341 None:intergenic
TTCGGTTCTAATTGAAGGTT+TGG 0.375503 5_3:+11580998 Msa0798710:CDS
AACTCTTTGATGGCCGAATC+AGG 0.382129 5_3:-11582021 None:intergenic
CAAGCCAACAATGTATGAAA+TGG 0.386975 5_3:+11583961 Msa0798710:CDS
ACGTACTTTGAAACAGTATT+CGG 0.388885 5_3:+11580980 Msa0798710:CDS
TGGAAATCTTGTGAAACTAA+TGG 0.394475 5_3:+11584134 Msa0798710:CDS
TACGTCCATGTCGCGCTAGA+AGG 0.402460 5_3:-11581517 None:intergenic
CTTCACTAGCAACTCTTTGA+TGG 0.403178 5_3:-11582031 None:intergenic
TGCTGGGTTGCTGATCGACC+TGG 0.409148 5_3:+11581455 Msa0798710:CDS
TTCTGGTTCCATACCTGATT+CGG 0.410204 5_3:+11582008 Msa0798710:CDS
AAGAAATTCCACACAGTATC+CGG 0.412127 5_3:-11581431 None:intergenic
CAGTATTCGGTTCTAATTGA+AGG 0.419628 5_3:+11580993 Msa0798710:CDS
ACTTACAATAACCTTCTATC+AGG 0.420198 5_3:-11581939 None:intergenic
GTCCTTCCACTTGCATTACC+TGG 0.422582 5_3:+11582123 Msa0798710:CDS
TTGCATTACCTGGTCATGTA+TGG 0.429367 5_3:+11582133 Msa0798710:CDS
GCCAGACGCGTATCTGTATA+AGG 0.430893 5_3:+11581915 Msa0798710:CDS
CAACAAGAGCTGCACTGGCT+TGG 0.436660 5_3:+11581962 Msa0798710:CDS
ACTTGAAGAGTGGTTGTTCT+CGG 0.440441 5_3:+11584218 Msa0798710:CDS
CTGAAAATGTTTGGATATCT+GGG 0.442804 5_3:-11581810 None:intergenic
ACACTCTTGATTCTTTCATC+CGG 0.443612 5_3:-11581173 None:intergenic
GAAGGATGAAGGAATTCTTA+AGG 0.446233 5_3:+11581121 Msa0798710:CDS
ACATCCATTTCATACATTGT+TGG 0.446716 5_3:-11583965 None:intergenic
GATTCACTTAAAACCTTGGC+TGG 0.457260 5_3:+11581286 Msa0798710:CDS
AAACAGTTTCCATCATTGTC+AGG 0.459516 5_3:-11584165 None:intergenic
GGAAATCTTGTGAAACTAAT+GGG 0.462411 5_3:+11584135 Msa0798710:CDS
CTTGATCAACCATCTTCAAA+TGG 0.466617 5_3:+11583754 Msa0798710:CDS
CACTCTTGATTCTTTCATCC+GGG 0.466810 5_3:-11581172 None:intergenic
CTGTATAAGGTCCTGATAGA+AGG 0.471205 5_3:+11581928 Msa0798710:CDS
GGTGAGTTTGTTATTGCAGC+AGG 0.472558 5_3:+11581097 Msa0798710:CDS
ACTCGGTGGTTTCGCTTACA+TGG 0.474294 5_3:+11584259 Msa0798710:CDS
AGTTGCTAGTGAAGAGCCTC+TGG 0.476859 5_3:+11582040 Msa0798710:CDS
TCATCTCATCAAGCATGTCC+AGG 0.481198 5_3:-11581771 None:intergenic
GTGAAGAGCCTCTGGAAAGA+AGG 0.484880 5_3:+11582048 Msa0798710:CDS
CATCTCGAAGATCAGAATAG+AGG 0.487430 5_3:+11581559 Msa0798710:CDS
TATCGGAATCCTTCCACACT+TGG 0.489647 5_3:-11581747 None:intergenic
TAAGTCAACAAGAGCTGCAC+TGG 0.490541 5_3:+11581957 Msa0798710:CDS
TGTGTGGAATTTCTTCTGCT+GGG 0.490658 5_3:+11581439 Msa0798710:CDS
ATAGCCATGGATGTTGCAAT+TGG 0.492998 5_3:+11584297 Msa0798710:CDS
ATTAACCTTATGGTTCTGAA+TGG 0.498328 5_3:-11581593 None:intergenic
ATCAGGACTGCAATTCTGTA+AGG 0.498653 5_3:-11581330 None:intergenic
CAAAGTTCGTGTGGACAACT+AGG 0.503289 5_3:+11581375 Msa0798710:CDS
CTGAGTGAGAATTGTAAGAT+TGG 0.506708 5_3:+11584010 Msa0798710:CDS
ATCAAGCATGTCCAGGGTAT+CGG 0.509612 5_3:-11581764 None:intergenic
CACCAAACTTTGAACTAACA+AGG 0.512914 5_3:-11583639 None:intergenic
TTGCAGCAGGTGAAGGATGA+AGG 0.514811 5_3:+11581110 Msa0798710:CDS
TGAAGGAATTCTTAAGGATG+TGG 0.518418 5_3:+11581127 Msa0798710:CDS
GTTCTAATTGAAGGTTTGGT+TGG 0.519428 5_3:+11581002 Msa0798710:CDS
ATGGGATTCACTTAAAACCT+TGG 0.520730 5_3:+11581282 Msa0798710:CDS
AGTAAAATGTTTGATGACGT+TGG 0.523503 5_3:+11581026 Msa0798710:CDS
ACCTTATACAGATACGCGTC+TGG 0.524198 5_3:-11581916 None:intergenic
CAGACCAATTGCAACATCCA+TGG 0.524233 5_3:-11584301 None:intergenic
GTATGAAATGGATGTGATCA+TGG 0.524330 5_3:+11583973 Msa0798710:CDS
TTTGATGGCCGAATCAGGTA+TGG 0.524348 5_3:-11582016 None:intergenic
ATGTGGATGAATTGTTTGAA+GGG 0.525014 5_3:+11581144 Msa0798710:CDS
AAATGCTGATGCTGCTCTGA+AGG 0.525513 5_3:+11581640 Msa0798710:CDS
GATGTGGATGAATTGTTTGA+AGG 0.528226 5_3:+11581143 Msa0798710:CDS
CACAATGTGATCATGTAGAT+GGG 0.532033 5_3:+11581264 Msa0798710:CDS
GAACATTAACCAAGTGTGGA+AGG 0.535873 5_3:+11581738 Msa0798710:intron
TCTAGTGCTGATACCTCATC+AGG 0.535975 5_3:-11581347 None:intergenic
TTCTATTGATAGCAGTGATG+AGG 0.550194 5_3:+11581202 Msa0798710:CDS
TTAAGAACATTAACCAAGTG+TGG 0.552345 5_3:+11581734 Msa0798710:intron
ATCTTTGAAAACTTCAAACT+CGG 0.553009 5_3:+11584242 Msa0798710:CDS
ATGACCCTTCTAGCGCGACA+TGG 0.556861 5_3:+11581512 Msa0798710:CDS
TTAGTTTCACAAGATTTCCA+TGG 0.557743 5_3:-11584131 None:intergenic
ACGTCCATGTCGCGCTAGAA+GGG 0.559332 5_3:-11581516 None:intergenic
GCCTCTGGAAAGAAGGTAGA+CGG 0.559458 5_3:+11582055 Msa0798710:CDS
GATGAGAATGAGGACGAGGG+TGG 0.559684 5_3:+11581224 Msa0798710:CDS
AATTGCAACATCCATGGCTA+TGG 0.562845 5_3:-11584295 None:intergenic
ATCTCGAAGATCAGAATAGA+GGG 0.563251 5_3:+11581560 Msa0798710:CDS
GAAAGAAGGTAGACGGAGAG+AGG 0.569327 5_3:+11582062 Msa0798710:CDS
TATATATTATGAGTAAATCC+AGG 0.571391 5_3:-11581473 None:intergenic
CAGTGATGAGGATGAGAATG+AGG 0.572880 5_3:+11581214 Msa0798710:CDS
TCCGTCTACCTTCTTTCCAG+AGG 0.577819 5_3:-11582056 None:intergenic
TGATGAGGTATCAGCACTAG+AGG 0.580742 5_3:+11581349 Msa0798710:CDS
TCAGAGAATAACCATAGCCA+TGG 0.584198 5_3:+11584284 Msa0798710:CDS
TTTGTTATTGCAGCAGGTGA+AGG 0.584701 5_3:+11581103 Msa0798710:CDS
GTTCGTGTGGACAACTAGGT+TGG 0.586491 5_3:+11581379 Msa0798710:CDS
GACTACCATTCAGAACCATA+AGG 0.587707 5_3:+11581588 Msa0798710:CDS
TAAAACCTTGGCTGGATCCG+CGG 0.590765 5_3:+11581294 Msa0798710:CDS
CTGACAGTCCATACATGACC+AGG 0.594467 5_3:-11582141 None:intergenic
CATTGAAAAGAGTTTCTGCA+CGG 0.599322 5_3:-11581872 None:intergenic
TGAGGATGAGAATGAGGACG+AGG 0.601840 5_3:+11581220 Msa0798710:CDS
GTGGAAGGATTCCGATACCC+TGG 0.605106 5_3:+11581753 Msa0798710:CDS
TTTGAAAACTTCAAACTCGG+TGG 0.605841 5_3:+11584245 Msa0798710:CDS
AAAGACCGCGGATCCAGCCA+AGG 0.608186 5_3:-11581299 None:intergenic
ATTGTTTGAAGGGATTTGCC+CGG 0.613868 5_3:+11581154 Msa0798710:CDS
AGGGATCAAAACTGAACAGT+CGG 0.614320 5_3:-11583713 None:intergenic
AACAAACTCACCGTTCGACT+AGG 0.617703 5_3:-11581086 None:intergenic
CATCTCATCAAGCATGTCCA+GGG 0.618669 5_3:-11581770 None:intergenic
ACATGACCAGGTAATGCAAG+TGG 0.620837 5_3:-11582129 None:intergenic
ACAGAATTGCAGTCCTGATG+AGG 0.621540 5_3:+11581334 Msa0798710:CDS
GCAGCTCTCTTCAACAGCTG+CGG 0.624107 5_3:-11582085 None:intergenic
TGGAATATTACCTAGTCGAA+CGG 0.624584 5_3:+11581076 Msa0798710:CDS
GGTGTGTCTCCTGACAATGA+TGG 0.628519 5_3:+11584156 Msa0798710:CDS
TAGAGGGTGCAAAGTTCGTG+TGG 0.631089 5_3:+11581366 Msa0798710:CDS
GACCAGGTAATGCAAGTGGA+AGG 0.640755 5_3:-11582125 None:intergenic
GAGCTGCGAGGAAGTAAATG+TGG 0.649634 5_3:+11582101 Msa0798710:CDS
GATGAGGTATCAGCACTAGA+GGG 0.650518 5_3:+11581350 Msa0798710:CDS
ACCAAACTTTGAACTAACAA+GGG 0.655493 5_3:-11583638 None:intergenic
GAAATGGATGTGATCATGGA+AGG 0.661178 5_3:+11583977 Msa0798710:CDS
ATTCTGCAGAAGGTAAACCA+TGG 0.662360 5_3:+11584114 Msa0798710:intron
TTAGGTCACCGGATACTGTG+TGG 0.679276 5_3:+11581423 Msa0798710:CDS
GAGGATGAGAATGAGGACGA+GGG 0.684142 5_3:+11581221 Msa0798710:CDS
AAAATGGATCACTTGAAGAG+TGG 0.692384 5_3:+11584208 Msa0798710:CDS
AGCTGTTGAAGAGAGCTGCG+AGG 0.717575 5_3:+11582089 Msa0798710:CDS
AAGGCACTAGCCAAAGACCG+CGG 0.751118 5_3:-11581311 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAATTGCATATATATAA+TGG + chr5_3:11583253-11583272 Msa0798710:intron 10.0%
!! ATGCAATTATAATATAATAC+AGG - chr5_3:11583245-11583264 None:intergenic 15.0%
!! TATATATTATGAGTAAATCC+AGG - chr5_3:11581476-11581495 None:intergenic 20.0%
!!! TTCAAATAGTTTAGTTTCAA+AGG + chr5_3:11582197-11582216 Msa0798710:intron 20.0%
!!! TCAAATAGTTTAGTTTCAAA+GGG + chr5_3:11582198-11582217 Msa0798710:intron 20.0%
!!! CTTAAACTGTGATTTATTTT+GGG + chr5_3:11582318-11582337 Msa0798710:intron 20.0%
!!! CTTTTTGTAAGAAAATTAGA+AGG - chr5_3:11582649-11582668 None:intergenic 20.0%
!!! TTTTTTTTTGTTGGTGTAAA+AGG + chr5_3:11582760-11582779 Msa0798710:intron 20.0%
!!! TTTTTTTTGTTGGTGTAAAA+GGG + chr5_3:11582761-11582780 Msa0798710:intron 20.0%
!! TAAAGATGGTAAGAATAATA+TGG - chr5_3:11583418-11583437 None:intergenic 20.0%
! AAAGTCAATGATTAACCTTA+TGG - chr5_3:11581606-11581625 None:intergenic 25.0%
!!! AGGTTAATCATTGACTTTTA+TGG + chr5_3:11581608-11581627 Msa0798710:CDS 25.0%
!!! GGTTAATCATTGACTTTTAT+GGG + chr5_3:11581609-11581628 Msa0798710:CDS 25.0%
!! CTTGATGAGATGATTTTAAA+TGG + chr5_3:11581781-11581800 Msa0798710:CDS 25.0%
! TTTGAAGATATGAAGAATTC+TGG + chr5_3:11581991-11582010 Msa0798710:CDS 25.0%
! CCAAAATAAATCACAGTTTA+AGG - chr5_3:11582320-11582339 None:intergenic 25.0%
!! CCTTAAACTGTGATTTATTT+TGG + chr5_3:11582317-11582336 Msa0798710:intron 25.0%
!!! GAGTTTTGAGAATGTATTAT+TGG + chr5_3:11582379-11582398 Msa0798710:intron 25.0%
! TTGCACAATCATATAATGAA+TGG + chr5_3:11582494-11582513 Msa0798710:intron 25.0%
!! CCTTTTGTAAGAAAATTAGA+AGG - chr5_3:11582615-11582634 None:intergenic 25.0%
!! CCTTCTAATTTTCTTACAAA+AGG + chr5_3:11582612-11582631 Msa0798710:intron 25.0%
!! CTAATTTTCTTACAAAAGGT+TGG + chr5_3:11582616-11582635 Msa0798710:intron 25.0%
! TTTCTTACAAAAAGAAGAGT+TGG + chr5_3:11582655-11582674 Msa0798710:intron 25.0%
! CAATTTGTAAGAAAATGAGA+AGG - chr5_3:11582688-11582707 None:intergenic 25.0%
!! CTTCTCATTTTCTTACAAAT+TGG + chr5_3:11582686-11582705 Msa0798710:intron 25.0%
!!! AGTTCCTCTTTTTTTTTTGT+TGG + chr5_3:11582751-11582770 Msa0798710:intron 25.0%
! TACACCAACAAAAAAAAAAG+AGG - chr5_3:11582758-11582777 None:intergenic 25.0%
! TGAATATTAATCTCTCGAAT+AGG + chr5_3:11582802-11582821 Msa0798710:intron 25.0%
! GAATATTAATCTCTCGAATA+GGG + chr5_3:11582803-11582822 Msa0798710:intron 25.0%
! TTAACACCGTTATATTCTTA+TGG + chr5_3:11582864-11582883 Msa0798710:intron 25.0%
! ATTCTGCCATAAGAATATAA+CGG - chr5_3:11582873-11582892 None:intergenic 25.0%
! TATTATTTGTTCCCTATTTC+TGG - chr5_3:11583142-11583161 None:intergenic 25.0%
! TATATTGAAACCTATGTAAC+TGG + chr5_3:11583191-11583210 Msa0798710:intron 25.0%
! TATGGTTTAACGTTTAACAA+AGG - chr5_3:11583285-11583304 None:intergenic 25.0%
! TATGGTATTATAACCCAATT+TGG - chr5_3:11583400-11583419 None:intergenic 25.0%
!! TGTTCAATTGATTCTTTGAA+GGG - chr5_3:11583567-11583586 None:intergenic 25.0%
!! TTGTTCAATTGATTCTTTGA+AGG - chr5_3:11583568-11583587 None:intergenic 25.0%
! TCAAAGAATCAATTGAACAA+AGG + chr5_3:11583568-11583587 Msa0798710:intron 25.0%
! AGTATCTTATTACTTATGTG+TGG + chr5_3:11583596-11583615 Msa0798710:intron 25.0%
!! ATCTTTGAAAACTTCAAACT+CGG + chr5_3:11584242-11584261 Msa0798710:CDS 25.0%
!! ACGTACTTTGAAACAGTATT+CGG + chr5_3:11580980-11580999 Msa0798710:CDS 30.0%
!! AGTAAAATGTTTGATGACGT+TGG + chr5_3:11581026-11581045 Msa0798710:CDS 30.0%
ATGTGGATGAATTGTTTGAA+GGG + chr5_3:11581144-11581163 Msa0798710:CDS 30.0%
! GCAAGATACTTAGAAGTTTT+AGG + chr5_3:11581405-11581424 Msa0798710:CDS 30.0%
!! ATTAACCTTATGGTTCTGAA+TGG - chr5_3:11581596-11581615 None:intergenic 30.0%
AACAATGATCGAATACTTTG+TGG + chr5_3:11581668-11581687 Msa0798710:intron 30.0%
ACAATGATCGAATACTTTGT+GGG + chr5_3:11581669-11581688 Msa0798710:intron 30.0%
GGTTAATGTTCTTAAAAGAG+AGG - chr5_3:11581729-11581748 None:intergenic 30.0%
TTAAGAACATTAACCAAGTG+TGG + chr5_3:11581734-11581753 Msa0798710:intron 30.0%
CTGAAAATGTTTGGATATCT+GGG - chr5_3:11581813-11581832 None:intergenic 30.0%
! ATGCAGTATTTTTCACAACT+TGG + chr5_3:11581838-11581857 Msa0798710:CDS 30.0%
ACTTACAATAACCTTCTATC+AGG - chr5_3:11581942-11581961 None:intergenic 30.0%
AAATCACAGTTTAAGGAACT+TGG - chr5_3:11582313-11582332 None:intergenic 30.0%
!!! AAACTGTGATTTATTTTGGG+AGG + chr5_3:11582321-11582340 Msa0798710:intron 30.0%
!!! AACTGTGATTTATTTTGGGA+GGG + chr5_3:11582322-11582341 Msa0798710:intron 30.0%
! TACTGCACCTTAAAACTTTT+TGG - chr5_3:11582352-11582371 None:intergenic 30.0%
TTTGAGAATGTATTATTGGC+AGG + chr5_3:11582383-11582402 Msa0798710:intron 30.0%
TCATATAATGAATGGACCTT+TGG + chr5_3:11582502-11582521 Msa0798710:intron 30.0%
!!! CTTTTTTTTAGGCATAGCAT+GGG - chr5_3:11582937-11582956 None:intergenic 30.0%
!!! ACTTTTTTTTAGGCATAGCA+TGG - chr5_3:11582938-11582957 None:intergenic 30.0%
TATTAGATGTCAAGCTAATG+TGG + chr5_3:11583079-11583098 Msa0798710:intron 30.0%
ATGCCTTTACCAAAATGTAA+GGG - chr5_3:11583324-11583343 None:intergenic 30.0%
TGCGCAGAATATAATAAAGA+TGG - chr5_3:11583432-11583451 None:intergenic 30.0%
GCATGATTTCATACTTGTTT+GGG + chr5_3:11583449-11583468 Msa0798710:intron 30.0%
TTTCAAATCTTAGACACTGT+TGG - chr5_3:11583480-11583499 None:intergenic 30.0%
ACCAAACTTTGAACTAACAA+GGG - chr5_3:11583641-11583660 None:intergenic 30.0%
! TTTTCAGCTAACATTTCAAC+TGG - chr5_3:11583670-11583689 None:intergenic 30.0%
! CTTTTTCTTCCATTTGAAGA+TGG - chr5_3:11583766-11583785 None:intergenic 30.0%
!! CAAAATCTGGCTCTTATAAT+TGG + chr5_3:11583793-11583812 Msa0798710:CDS 30.0%
! CTTATAATTGGTATTAGCCT+AGG + chr5_3:11583805-11583824 Msa0798710:intron 30.0%
!! AAATGAAAAAAGCACTTCCT+AGG - chr5_3:11583825-11583844 None:intergenic 30.0%
! TAAGTTACTTTAGGTGTTTC+AGG + chr5_3:11583929-11583948 Msa0798710:intron 30.0%
ACATCCATTTCATACATTGT+TGG - chr5_3:11583968-11583987 None:intergenic 30.0%
ATTGGTGAATCAGTTTACAA+GGG + chr5_3:11584028-11584047 Msa0798710:intron 30.0%
GTTTACAAGGGTAATATAGA+TGG + chr5_3:11584040-11584059 Msa0798710:intron 30.0%
AATCAAAAAAGATGCTTCTG+AGG + chr5_3:11584083-11584102 Msa0798710:intron 30.0%
TTAGTTTCACAAGATTTCCA+TGG - chr5_3:11584134-11584153 None:intergenic 30.0%
TGGAAATCTTGTGAAACTAA+TGG + chr5_3:11584134-11584153 Msa0798710:CDS 30.0%
GGAAATCTTGTGAAACTAAT+GGG + chr5_3:11584135-11584154 Msa0798710:CDS 30.0%
! CAGTATTCGGTTCTAATTGA+AGG + chr5_3:11580993-11581012 Msa0798710:CDS 35.0%
! TTCGGTTCTAATTGAAGGTT+TGG + chr5_3:11580998-11581017 Msa0798710:CDS 35.0%
! GTTCTAATTGAAGGTTTGGT+TGG + chr5_3:11581002-11581021 Msa0798710:CDS 35.0%
! GTTAATGAGATGCAAGTTGA+TGG + chr5_3:11581056-11581075 Msa0798710:CDS 35.0%
TGGAATATTACCTAGTCGAA+CGG + chr5_3:11581076-11581095 Msa0798710:CDS 35.0%
GAAGGATGAAGGAATTCTTA+AGG + chr5_3:11581121-11581140 Msa0798710:CDS 35.0%
TGAAGGAATTCTTAAGGATG+TGG + chr5_3:11581127-11581146 Msa0798710:CDS 35.0%
GATGTGGATGAATTGTTTGA+AGG + chr5_3:11581143-11581162 Msa0798710:CDS 35.0%
ACACTCTTGATTCTTTCATC+CGG - chr5_3:11581176-11581195 None:intergenic 35.0%
! TTCTATTGATAGCAGTGATG+AGG + chr5_3:11581202-11581221 Msa0798710:CDS 35.0%
TCACAATGTGATCATGTAGA+TGG + chr5_3:11581263-11581282 Msa0798710:CDS 35.0%
CACAATGTGATCATGTAGAT+GGG + chr5_3:11581264-11581283 Msa0798710:CDS 35.0%
ATGGGATTCACTTAAAACCT+TGG + chr5_3:11581282-11581301 Msa0798710:CDS 35.0%
!!! ACTTAGAAGTTTTAGGTCAC+CGG + chr5_3:11581412-11581431 Msa0798710:CDS 35.0%
AAGAAATTCCACACAGTATC+CGG - chr5_3:11581434-11581453 None:intergenic 35.0%
ATCTCGAAGATCAGAATAGA+GGG + chr5_3:11581560-11581579 Msa0798710:CDS 35.0%
CCTGAAAATGTTTGGATATC+TGG - chr5_3:11581814-11581833 None:intergenic 35.0%
! CCAGATATCCAAACATTTTC+AGG + chr5_3:11581811-11581830 Msa0798710:CDS 35.0%
GCATTAGACCTGAAAATGTT+TGG - chr5_3:11581822-11581841 None:intergenic 35.0%
CATTGAAAAGAGTTTCTGCA+CGG - chr5_3:11581875-11581894 None:intergenic 35.0%
TTGTGCTTAGATTTCATGCA+TGG - chr5_3:11582268-11582287 None:intergenic 35.0%
TCTAAGCACAAAGTAACAAG+CGG + chr5_3:11582277-11582296 Msa0798710:intron 35.0%
!!! ACTGTGATTTATTTTGGGAG+GGG + chr5_3:11582323-11582342 Msa0798710:intron 35.0%
GATCCTTCATTGTATTCACT+TGG + chr5_3:11582451-11582470 Msa0798710:intron 35.0%
TGACCAAGTGAATACAATGA+AGG - chr5_3:11582457-11582476 None:intergenic 35.0%
ATTAATCTCTCGAATAGGGT+TGG + chr5_3:11582807-11582826 Msa0798710:intron 35.0%
!! TTACTTCTAGCTTAACCAGT+GGG - chr5_3:11582907-11582926 None:intergenic 35.0%
!!! GACATGGGTCACTTTTTTTT+AGG - chr5_3:11582948-11582967 None:intergenic 35.0%
ACGATTGAATGAGATGACAT+GGG - chr5_3:11582963-11582982 None:intergenic 35.0%
AACGATTGAATGAGATGACA+TGG - chr5_3:11582964-11582983 None:intergenic 35.0%
TCATCTCATTCAATCGTTCT+TGG + chr5_3:11582966-11582985 Msa0798710:intron 35.0%
!!! AATCGTTCTTGGCTTGTTTT+CGG + chr5_3:11582977-11582996 Msa0798710:intron 35.0%
AAAAAGCTAGACTCAAGCAA+AGG + chr5_3:11583020-11583039 Msa0798710:intron 35.0%
! TTTCTGGTACATAGCTACTT+CGG - chr5_3:11583126-11583145 None:intergenic 35.0%
AGTAGCTATGTACCAGAAAT+AGG + chr5_3:11583127-11583146 Msa0798710:intron 35.0%
GTAGCTATGTACCAGAAATA+GGG + chr5_3:11583128-11583147 Msa0798710:intron 35.0%
TGCCTTTACCAAAATGTAAG+GGG - chr5_3:11583323-11583342 None:intergenic 35.0%
GATGCCTTTACCAAAATGTA+AGG - chr5_3:11583325-11583344 None:intergenic 35.0%
CATCAAGTTAGATGGTCATT+AGG + chr5_3:11583341-11583360 Msa0798710:intron 35.0%
CGCATGATTTCATACTTGTT+TGG + chr5_3:11583448-11583467 Msa0798710:intron 35.0%
TCTTATTACTTATGTGTGGC+AGG + chr5_3:11583600-11583619 Msa0798710:intron 35.0%
ACCCTTGTTAGTTCAAAGTT+TGG + chr5_3:11583637-11583656 Msa0798710:CDS 35.0%
CACCAAACTTTGAACTAACA+AGG - chr5_3:11583642-11583661 None:intergenic 35.0%
!! GTTTTGGTAAACTTGTCACA+GGG - chr5_3:11583735-11583754 None:intergenic 35.0%
!! AGTTTTGGTAAACTTGTCAC+AGG - chr5_3:11583736-11583755 None:intergenic 35.0%
! GAAGATGGTTGATCAAGTTT+TGG - chr5_3:11583751-11583770 None:intergenic 35.0%
CTTGATCAACCATCTTCAAA+TGG + chr5_3:11583754-11583773 Msa0798710:CDS 35.0%
AAAAAGCAGCAGTCAAAATC+TGG + chr5_3:11583780-11583799 Msa0798710:CDS 35.0%
ACATATACGTACACAAGTGA+TGG - chr5_3:11583859-11583878 None:intergenic 35.0%
AAGTAACTTATCTGCAGTCT+CGG - chr5_3:11583919-11583938 None:intergenic 35.0%
! GACTGCAGATAAGTTACTTT+AGG + chr5_3:11583920-11583939 Msa0798710:intron 35.0%
CAAGCCAACAATGTATGAAA+TGG + chr5_3:11583961-11583980 Msa0798710:CDS 35.0%
GTATGAAATGGATGTGATCA+TGG + chr5_3:11583973-11583992 Msa0798710:CDS 35.0%
CTGAGTGAGAATTGTAAGAT+TGG + chr5_3:11584010-11584029 Msa0798710:CDS 35.0%
GATTGGTGAATCAGTTTACA+AGG + chr5_3:11584027-11584046 Msa0798710:intron 35.0%
AAACAGTTTCCATCATTGTC+AGG - chr5_3:11584168-11584187 None:intergenic 35.0%
!! CAATGATGGAAACTGTTTTC+TGG + chr5_3:11584170-11584189 Msa0798710:CDS 35.0%
GTCTATGAGTATGCTGAAAA+TGG + chr5_3:11584192-11584211 Msa0798710:CDS 35.0%
AAAATGGATCACTTGAAGAG+TGG + chr5_3:11584208-11584227 Msa0798710:CDS 35.0%
TTTGAAAACTTCAAACTCGG+TGG + chr5_3:11584245-11584264 Msa0798710:CDS 35.0%
!! TTTGTTATTGCAGCAGGTGA+AGG + chr5_3:11581103-11581122 Msa0798710:CDS 40.0%
ATTGTTTGAAGGGATTTGCC+CGG + chr5_3:11581154-11581173 Msa0798710:CDS 40.0%
CACTCTTGATTCTTTCATCC+GGG - chr5_3:11581175-11581194 None:intergenic 40.0%
GATTCACTTAAAACCTTGGC+TGG + chr5_3:11581286-11581305 Msa0798710:CDS 40.0%
ATCAGGACTGCAATTCTGTA+AGG - chr5_3:11581333-11581352 None:intergenic 40.0%
TGTGTGGAATTTCTTCTGCT+GGG + chr5_3:11581439-11581458 Msa0798710:CDS 40.0%
CATCTCGAAGATCAGAATAG+AGG + chr5_3:11581559-11581578 Msa0798710:CDS 40.0%
GACTACCATTCAGAACCATA+AGG + chr5_3:11581588-11581607 Msa0798710:CDS 40.0%
GAACATTAACCAAGTGTGGA+AGG + chr5_3:11581738-11581757 Msa0798710:intron 40.0%
! CGTGCAGAAACTCTTTTCAA+TGG + chr5_3:11581873-11581892 Msa0798710:CDS 40.0%
! TTTTCAATGGTCAGACAGAG+CGG + chr5_3:11581886-11581905 Msa0798710:CDS 40.0%
CTGTATAAGGTCCTGATAGA+AGG + chr5_3:11581928-11581947 Msa0798710:CDS 40.0%
!! TTCTGGTTCCATACCTGATT+CGG + chr5_3:11582008-11582027 Msa0798710:CDS 40.0%
CTTCACTAGCAACTCTTTGA+TGG - chr5_3:11582034-11582053 None:intergenic 40.0%
TTGCATTACCTGGTCATGTA+TGG + chr5_3:11582133-11582152 Msa0798710:CDS 40.0%
ATAGCCCAATGGATAACTCT+AGG - chr5_3:11582226-11582245 None:intergenic 40.0%
TCCATTGGGCTATATGATAG+AGG + chr5_3:11582233-11582252 Msa0798710:intron 40.0%
ACCTCTATCATATAGCCCAA+TGG - chr5_3:11582237-11582256 None:intergenic 40.0%
! GGGGTTGCCAAAAAGTTTTA+AGG + chr5_3:11582342-11582361 Msa0798710:intron 40.0%
! GGAATTAGCTCTTGTTCTGA+TGG + chr5_3:11582423-11582442 Msa0798710:intron 40.0%
!! CTTACTTCTAGCTTAACCAG+TGG - chr5_3:11582908-11582927 None:intergenic 40.0%
CAAAGGAGAGTAGGTAAGAA+GGG + chr5_3:11583037-11583056 Msa0798710:intron 40.0%
GTTGACACTTCCAGTTACAT+AGG - chr5_3:11583204-11583223 None:intergenic 40.0%
GGGCAAACAAGCAAAAGATA+TGG - chr5_3:11583303-11583322 None:intergenic 40.0%
! CTTGTTTGCCCCTTACATTT+TGG + chr5_3:11583312-11583331 Msa0798710:intron 40.0%
!! TGCCCCTTACATTTTGGTAA+AGG + chr5_3:11583318-11583337 Msa0798710:intron 40.0%
!! GGTAAAGGCATCAAGTTAGA+TGG + chr5_3:11583333-11583352 Msa0798710:intron 40.0%
ATCGTGTATGGACACCAAAT+TGG + chr5_3:11583383-11583402 Msa0798710:intron 40.0%
TCGTGTATGGACACCAAATT+GGG + chr5_3:11583384-11583403 Msa0798710:intron 40.0%
AGGGATCAAAACTGAACAGT+CGG - chr5_3:11583716-11583735 None:intergenic 40.0%
GAAATGGATGTGATCATGGA+AGG + chr5_3:11583977-11583996 Msa0798710:CDS 40.0%
GGAGCTAAAAATTCTGCAGA+AGG + chr5_3:11584104-11584123 Msa0798710:intron 40.0%
ATTCTGCAGAAGGTAAACCA+TGG + chr5_3:11584114-11584133 Msa0798710:intron 40.0%
ACTTGAAGAGTGGTTGTTCT+CGG + chr5_3:11584218-11584237 Msa0798710:CDS 40.0%
TCAGAGAATAACCATAGCCA+TGG + chr5_3:11584284-11584303 Msa0798710:CDS 40.0%
AATTGCAACATCCATGGCTA+TGG - chr5_3:11584298-11584317 None:intergenic 40.0%
ATAGCCATGGATGTTGCAAT+TGG + chr5_3:11584297-11584316 Msa0798710:CDS 40.0%
AACAAACTCACCGTTCGACT+AGG - chr5_3:11581089-11581108 None:intergenic 45.0%
!! GGTGAGTTTGTTATTGCAGC+AGG + chr5_3:11581097-11581116 Msa0798710:CDS 45.0%
CAGTGATGAGGATGAGAATG+AGG + chr5_3:11581214-11581233 Msa0798710:CDS 45.0%
ACAGAATTGCAGTCCTGATG+AGG + chr5_3:11581334-11581353 Msa0798710:CDS 45.0%
!! TCTAGTGCTGATACCTCATC+AGG - chr5_3:11581350-11581369 None:intergenic 45.0%
! TGATGAGGTATCAGCACTAG+AGG + chr5_3:11581349-11581368 Msa0798710:CDS 45.0%
! GATGAGGTATCAGCACTAGA+GGG + chr5_3:11581350-11581369 Msa0798710:CDS 45.0%
CAAAGTTCGTGTGGACAACT+AGG + chr5_3:11581375-11581394 Msa0798710:CDS 45.0%
CTGTGTGGAATTTCTTCTGC+TGG + chr5_3:11581438-11581457 Msa0798710:CDS 45.0%
AAATGCTGATGCTGCTCTGA+AGG + chr5_3:11581640-11581659 Msa0798710:CDS 45.0%
TATCGGAATCCTTCCACACT+TGG - chr5_3:11581750-11581769 None:intergenic 45.0%
ATCAAGCATGTCCAGGGTAT+CGG - chr5_3:11581767-11581786 None:intergenic 45.0%
CATCTCATCAAGCATGTCCA+GGG - chr5_3:11581773-11581792 None:intergenic 45.0%
TCATCTCATCAAGCATGTCC+AGG - chr5_3:11581774-11581793 None:intergenic 45.0%
ACCTTATACAGATACGCGTC+TGG - chr5_3:11581919-11581938 None:intergenic 45.0%
TAAGTCAACAAGAGCTGCAC+TGG + chr5_3:11581957-11581976 Msa0798710:CDS 45.0%
! TTTGATGGCCGAATCAGGTA+TGG - chr5_3:11582019-11582038 None:intergenic 45.0%
! AACTCTTTGATGGCCGAATC+AGG - chr5_3:11582024-11582043 None:intergenic 45.0%
ACATGACCAGGTAATGCAAG+TGG - chr5_3:11582132-11582151 None:intergenic 45.0%
GGTGCCTAGAGTTATCCATT+GGG + chr5_3:11582219-11582238 Msa0798710:intron 45.0%
GCTCTCAACACATCAACCAA+AGG - chr5_3:11582521-11582540 None:intergenic 45.0%
!! TGCTGACTTCTGCAACTTGA+GGG + chr5_3:11582555-11582574 Msa0798710:intron 45.0%
AGACTCAAGCAAAGGAGAGT+AGG + chr5_3:11583028-11583047 Msa0798710:intron 45.0%
GCAAAGGAGAGTAGGTAAGA+AGG + chr5_3:11583036-11583055 Msa0798710:intron 45.0%
CAGACCAATTGCAACATCCA+TGG - chr5_3:11584304-11584323 None:intergenic 45.0%
TTGCAGCAGGTGAAGGATGA+AGG + chr5_3:11581110-11581129 Msa0798710:CDS 50.0%
TGAGGATGAGAATGAGGACG+AGG + chr5_3:11581220-11581239 Msa0798710:CDS 50.0%
GAGGATGAGAATGAGGACGA+GGG + chr5_3:11581221-11581240 Msa0798710:CDS 50.0%
TAAAACCTTGGCTGGATCCG+CGG + chr5_3:11581294-11581313 Msa0798710:CDS 50.0%
! TAGAGGGTGCAAAGTTCGTG+TGG + chr5_3:11581366-11581385 Msa0798710:CDS 50.0%
GTTCGTGTGGACAACTAGGT+TGG + chr5_3:11581379-11581398 Msa0798710:CDS 50.0%
TTAGGTCACCGGATACTGTG+TGG + chr5_3:11581423-11581442 Msa0798710:CDS 50.0%
GCCAGACGCGTATCTGTATA+AGG + chr5_3:11581915-11581934 Msa0798710:CDS 50.0%
AGTTGCTAGTGAAGAGCCTC+TGG + chr5_3:11582040-11582059 Msa0798710:CDS 50.0%
! GTGAAGAGCCTCTGGAAAGA+AGG + chr5_3:11582048-11582067 Msa0798710:CDS 50.0%
! GCCTCTGGAAAGAAGGTAGA+CGG + chr5_3:11582055-11582074 Msa0798710:CDS 50.0%
TCCGTCTACCTTCTTTCCAG+AGG - chr5_3:11582059-11582078 None:intergenic 50.0%
GAAAGAAGGTAGACGGAGAG+AGG + chr5_3:11582062-11582081 Msa0798710:CDS 50.0%
GAGCTGCGAGGAAGTAAATG+TGG + chr5_3:11582101-11582120 Msa0798710:CDS 50.0%
GTCCTTCCACTTGCATTACC+TGG + chr5_3:11582123-11582142 Msa0798710:CDS 50.0%
GACCAGGTAATGCAAGTGGA+AGG - chr5_3:11582128-11582147 None:intergenic 50.0%
CTGACAGTCCATACATGACC+AGG - chr5_3:11582144-11582163 None:intergenic 50.0%
GGGTGCCTAGAGTTATCCAT+TGG + chr5_3:11582218-11582237 Msa0798710:intron 50.0%
!! CAGGACATGAGTTGATGCTC+AGG + chr5_3:11582402-11582421 Msa0798710:intron 50.0%
CAAGTTGCAGAAGTCAGCAG+AGG - chr5_3:11582554-11582573 None:intergenic 50.0%
!! CTGCTGACTTCTGCAACTTG+AGG + chr5_3:11582554-11582573 Msa0798710:intron 50.0%
! GCTGACTTCTGCAACTTGAG+GGG + chr5_3:11582556-11582575 Msa0798710:intron 50.0%
GAATTCGAACTCGAACCCAC+TGG + chr5_3:11582889-11582908 Msa0798710:intron 50.0%
CATACACGATGTCAGCTAGC+TGG - chr5_3:11583373-11583392 None:intergenic 50.0%
CAGCTAGCTGACATCGTGTA+TGG + chr5_3:11583371-11583390 Msa0798710:intron 50.0%
GGTGTGTCTCCTGACAATGA+TGG + chr5_3:11584156-11584175 Msa0798710:CDS 50.0%
! ACTCGGTGGTTTCGCTTACA+TGG + chr5_3:11584259-11584278 Msa0798710:CDS 50.0%
GATGAGAATGAGGACGAGGG+TGG + chr5_3:11581224-11581243 Msa0798710:CDS 55.0%
! AAGGCACTAGCCAAAGACCG+CGG - chr5_3:11581314-11581333 None:intergenic 55.0%
ATGACCCTTCTAGCGCGACA+TGG + chr5_3:11581512-11581531 Msa0798710:CDS 55.0%
ACGTCCATGTCGCGCTAGAA+GGG - chr5_3:11581519-11581538 None:intergenic 55.0%
TACGTCCATGTCGCGCTAGA+AGG - chr5_3:11581520-11581539 None:intergenic 55.0%
GTGGAAGGATTCCGATACCC+TGG + chr5_3:11581753-11581772 Msa0798710:CDS 55.0%
!! CAACAAGAGCTGCACTGGCT+TGG + chr5_3:11581962-11581981 Msa0798710:CDS 55.0%
GCAGCTCTCTTCAACAGCTG+CGG - chr5_3:11582088-11582107 None:intergenic 55.0%
AGCTGTTGAAGAGAGCTGCG+AGG + chr5_3:11582089-11582108 Msa0798710:CDS 55.0%
AAAGACCGCGGATCCAGCCA+AGG - chr5_3:11581302-11581321 None:intergenic 60.0%
TTGGCTGGATCCGCGGTCTT+TGG + chr5_3:11581301-11581320 Msa0798710:CDS 60.0%
TGCTGGGTTGCTGATCGACC+TGG + chr5_3:11581455-11581474 Msa0798710:CDS 60.0%
CACGATGTCAGCTAGCTGGC+TGG - chr5_3:11583369-11583388 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 11580969 11584350 11580969 ID=Msa0798710;Name=Msa0798710
chr5_3 mRNA 11580969 11584350 11580969 ID=Msa0798710-mRNA-1;Parent=Msa0798710;Name=Msa0798710-mRNA-1;_AED=0.14;_eAED=0.15;_QI=0|0|0|1|1|1|5|0|548
chr5_3 exon 11580969 11581661 11580969 ID=Msa0798710-mRNA-1:exon:4769;Parent=Msa0798710-mRNA-1
chr5_3 exon 11581739 11582182 11581739 ID=Msa0798710-mRNA-1:exon:4770;Parent=Msa0798710-mRNA-1
chr5_3 exon 11583622 11583814 11583622 ID=Msa0798710-mRNA-1:exon:4771;Parent=Msa0798710-mRNA-1
chr5_3 exon 11583951 11584039 11583951 ID=Msa0798710-mRNA-1:exon:4772;Parent=Msa0798710-mRNA-1
chr5_3 exon 11584123 11584350 11584123 ID=Msa0798710-mRNA-1:exon:4773;Parent=Msa0798710-mRNA-1
chr5_3 CDS 11580969 11581661 11580969 ID=Msa0798710-mRNA-1:cds;Parent=Msa0798710-mRNA-1
chr5_3 CDS 11581739 11582182 11581739 ID=Msa0798710-mRNA-1:cds;Parent=Msa0798710-mRNA-1
chr5_3 CDS 11583622 11583814 11583622 ID=Msa0798710-mRNA-1:cds;Parent=Msa0798710-mRNA-1
chr5_3 CDS 11583951 11584039 11583951 ID=Msa0798710-mRNA-1:cds;Parent=Msa0798710-mRNA-1
chr5_3 CDS 11584123 11584350 11584123 ID=Msa0798710-mRNA-1:cds;Parent=Msa0798710-mRNA-1
Gene Sequence

>Msa0798710

ATGAGGATTAAACGTACTTTGAAACAGTATTCGGTTCTAATTGAAGGTTTGGTTGGTAGTAAAATGTTTGATGACGTTGGAGTTTTAGTTAATGAGATGCAAGTTGATGGAATATTACCTAGTCGAACGGTGAGTTTGTTATTGCAGCAGGTGAAGGATGAAGGAATTCTTAAGGATGTGGATGAATTGTTTGAAGGGATTTGCCCGGATGAAAGAATCAAGAGTGTAAGTTTTTCTATTGATAGCAGTGATGAGGATGAGAATGAGGACGAGGGTGGAAATGAGAATGAAGTTTCACAATGTGATCATGTAGATGGGATTCACTTAAAACCTTGGCTGGATCCGCGGTCTTTGGCTAGTGCCTTACAGAATTGCAGTCCTGATGAGGTATCAGCACTAGAGGGTGCAAAGTTCGTGTGGACAACTAGGTTGGTATGCAAGATACTTAGAAGTTTTAGGTCACCGGATACTGTGTGGAATTTCTTCTGCTGGGTTGCTGATCGACCTGGATTTACTCATAATATATACACAGTGCAAAGAATCATGACCCTTCTAGCGCGACATGGACGTACTGAATTAGTTGATAGACTCATCTCGAAGATCAGAATAGAGGGAATGAGACTACCATTCAGAACCATAAGGTTAATCATTGACTTTTATGGGATTTCAAAAAATGCTGATGCTGCTCTGAAGAACATTAACCAAGTGTGGAAGGATTCCGATACCCTGGACATGCTTGATGAGATGATTTTAAATGGCATTTGCCCAGATATCCAAACATTTTCAGGTCTAATGCAGTATTTTTCACAACTTGGAGACATTAAAACCGTGCAGAAACTCTTTTCAATGGTCAGACAGAGCGGTTTCGAGCCAGACGCGTATCTGTATAAGGTCCTGATAGAAGGTTATTGTAAGTCAACAAGAGCTGCACTGGCTTGGAGACTATTTGAAGATATGAAGAATTCTGGTTCCATACCTGATTCGGCCATCAAAGAGTTGCTAGTGAAGAGCCTCTGGAAAGAAGGTAGACGGAGAGAGGCCGCAGCTGTTGAAGAGAGCTGCGAGGAAGTAAATGTGGTCCTTCCACTTGCATTACCTGGTCATGTATGGACTGTCAGCTCTGAAGATCTCACAAAAGATAACGACAATGTTACCCTTGTTAGTTCAAAGTTTGGTGCATCACCAGTTGAAATGTTAGCTGAAAACAATCATAACTTCACTGCTTCAACCGACTGTTCAGTTTTGATCCCTGTGACAAGTTTACCAAAACTTGATCAACCATCTTCAAATGGAAGAAAAAGCAGCAGTCAAAATCTGGCTCTTATAATTGGTTATGTAAGCAAGCCAACAATGTATGAAATGGATGTGATCATGGAAGGTACAATGAATCTGAGTGAGAATTGTAAGATTGGTGAATCAAAGGTAAACCATGGAAATCTTGTGAAACTAATGGGTGTGTCTCCTGACAATGATGGAAACTGTTTTCTGGTCTATGAGTATGCTGAAAATGGATCACTTGAAGAGTGGTTGTTCTCGGAATCTTTGAAAACTTCAAACTCGGTGGTTTCGCTTACATGGTCTCAGAGAATAACCATAGCCATGGATGTTGCAATTGGTCTGCAAATGAACATACTTATCCAAGAATAA
Protein sequence

>Msa0798710

MRIKRTLKQYSVLIEGLVGSKMFDDVGVLVNEMQVDGILPSRTVSLLLQQVKDEGILKDVDELFEGICPDERIKSVSFSIDSSDEDENEDEGGNENEVSQCDHVDGIHLKPWLDPRSLASALQNCSPDEVSALEGAKFVWTTRLVCKILRSFRSPDTVWNFFCWVADRPGFTHNIYTVQRIMTLLARHGRTELVDRLISKIRIEGMRLPFRTIRLIIDFYGISKNADAALKNINQVWKDSDTLDMLDEMILNGICPDIQTFSGLMQYFSQLGDIKTVQKLFSMVRQSGFEPDAYLYKVLIEGYCKSTRAALAWRLFEDMKNSGSIPDSAIKELLVKSLWKEGRRREAAAVEESCEEVNVVLPLALPGHVWTVSSEDLTKDNDNVTLVSSKFGASPVEMLAENNHNFTASTDCSVLIPVTSLPKLDQPSSNGRKSSSQNLALIIGYVSKPTMYEMDVIMEGTMNLSENCKIGESKVNHGNLVKLMGVSPDNDGNCFLVYEYAENGSLEEWLFSESLKTSNSVVSLTWSQRITIAMDVAIGLQMNILIQE*