AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0799520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0799520 MtrunA17_Chr5g0404951 98.707 232 2 1 1 232 1 231 2.10e-171 471
Msa0799520 MtrunA17_Chr3g0142191 53.846 221 95 5 1 220 1 215 2.59e-74 224
Msa0799520 MtrunA17_Chr3g0125241 47.260 146 73 2 1 146 26 167 2.02e-40 137
Msa0799520 MtrunA17_Chr1g0159661 43.919 148 79 2 1 148 1 144 2.74e-35 123
Msa0799520 MtrunA17_Chr7g0220121 34.234 222 111 8 1 208 1 201 3.05e-31 115
Msa0799520 MtrunA17_Chr8g0351051 38.333 180 96 4 1 173 1 172 3.09e-31 115
Msa0799520 MtrunA17_Chr3g0077501 40.556 180 90 5 1 173 1 170 7.81e-30 110
Msa0799520 MtrunA17_Chr1g0164791 36.000 175 102 2 1 168 1 172 2.70e-29 109
Msa0799520 MtrunA17_Chr8g0380021 40.000 180 91 5 1 173 17 186 2.88e-29 110
Msa0799520 MtrunA17_Chr3g0097101 38.122 181 97 4 1 174 16 188 4.49e-29 109
Msa0799520 MtrunA17_Chr4g0057151 36.082 194 112 4 1 187 1 189 1.97e-28 106
Msa0799520 MtrunA17_Chr4g0061691 38.674 181 85 6 1 168 1 168 2.23e-28 107
Msa0799520 MtrunA17_Chr5g0420081 36.559 186 96 6 1 175 1 175 2.49e-28 107
Msa0799520 MtrunA17_Chr6g0474371 37.572 173 99 3 1 168 1 169 2.92e-28 105
Msa0799520 MtrunA17_Chr5g0420091 40.000 170 93 5 1 165 1 166 3.53e-28 106
Msa0799520 MtrunA17_Chr7g0220111 38.122 181 97 5 1 174 1 173 4.52e-28 107
Msa0799520 MtrunA17_Chr8g0366231 36.872 179 91 6 1 168 1 168 5.36e-28 106
Msa0799520 MtrunA17_Chr2g0284911 39.444 180 92 5 1 173 16 185 5.77e-28 107
Msa0799520 MtrunA17_Chr8g0351041 37.500 176 80 4 1 161 1 161 8.13e-28 103
Msa0799520 MtrunA17_Chr8g0351031 36.066 183 87 4 1 168 1 168 9.36e-28 105
Msa0799520 MtrunA17_Chr6g0455511 37.912 182 96 6 1 174 1 173 1.63e-27 105
Msa0799520 MtrunA17_Chr2g0279821 36.306 157 78 4 1 147 1 145 3.75e-26 101
Msa0799520 MtrunA17_Chr3g0122251 38.961 154 83 3 1 147 1 150 5.54e-26 101
Msa0799520 MtrunA17_Chr7g0246431 36.994 173 98 4 1 168 1 167 8.55e-26 100
Msa0799520 MtrunA17_Chr4g0049541 35.393 178 93 3 1 168 1 166 9.17e-26 100
Msa0799520 MtrunA17_Chr1g0204111 36.782 174 98 4 1 168 17 184 1.54e-25 100
Msa0799520 MtrunA17_Chr4g0018421 34.706 170 102 3 1 165 1 166 2.55e-23 93.2
Msa0799520 MtrunA17_Chr5g0411691 35.897 156 79 5 1 147 1 144 1.41e-22 92.0
Msa0799520 MtrunA17_Chr2g0308251 64.912 57 20 0 1 57 1 57 5.59e-22 86.3
Msa0799520 MtrunA17_Chr4g0020221 36.301 146 88 2 1 143 1 144 6.41e-22 90.9
Msa0799520 MtrunA17_Chr5g0412461 37.288 177 92 6 1 168 1 167 7.06e-22 90.1
Msa0799520 MtrunA17_Chr5g0427401 37.143 175 93 5 1 168 1 165 7.38e-22 90.1
Msa0799520 MtrunA17_Chr1g0173161 64.516 62 22 0 1 62 1 62 8.69e-22 85.9
Msa0799520 MtrunA17_Chr8g0377561 64.912 57 20 0 1 57 1 57 1.21e-21 85.9
Msa0799520 MtrunA17_Chr4g0061671 54.795 73 32 1 1 73 1 72 1.80e-21 88.2
Msa0799520 MtrunA17_Chr7g0246381 62.712 59 22 0 1 59 1 59 1.91e-21 84.7
Msa0799520 MtrunA17_Chr5g0412271 35.176 199 116 6 1 194 1 191 3.66e-21 88.2
Msa0799520 MtrunA17_Chr4g0044071 64.912 57 20 0 1 57 1 57 2.19e-20 83.2
Msa0799520 MtrunA17_Chr5g0425191 63.158 57 21 0 1 57 1 57 7.64e-20 81.3
Msa0799520 MtrunA17_Chr4g0049901 34.104 173 105 4 1 168 27 195 3.96e-19 83.2
Msa0799520 MtrunA17_Chr5g0427921 55.932 59 26 0 1 59 1 59 1.43e-18 76.6
Msa0799520 MtrunA17_Chr1g0169761 51.613 62 30 0 1 62 1 62 1.69e-18 80.1
Msa0799520 MtrunA17_Chr8g0376821 51.613 62 30 0 1 62 1 62 2.17e-18 79.7
Msa0799520 MtrunA17_Chr4g0074101 48.438 64 33 0 1 64 1 64 4.59e-18 79.3
Msa0799520 MtrunA17_Chr3g0134451 49.485 97 46 3 1 96 1 95 1.76e-17 79.7
Msa0799520 MtrunA17_Chr1g0180591 37.008 127 70 4 1 124 1 120 8.76e-17 75.5
Msa0799520 MtrunA17_Chr8g0356071 50.000 62 31 0 1 62 1 62 2.01e-16 73.9
Msa0799520 MtrunA17_Chr8g0357771 48.387 62 32 0 1 62 1 62 6.17e-16 73.2
Msa0799520 MtrunA17_Chr8g0379021 50.000 70 33 1 2 71 12 79 9.64e-16 72.4
Msa0799520 MtrunA17_Chr3g0099421 54.286 70 30 1 2 71 34 101 1.09e-15 73.9
Msa0799520 MtrunA17_Chr2g0333981 35.461 141 71 4 1 125 11 147 1.50e-15 72.0
Msa0799520 MtrunA17_Chr8g0355091 50.000 70 33 1 2 71 9 76 1.58e-15 73.2
Msa0799520 MtrunA17_Chr1g0206701 50.000 70 33 1 2 71 9 76 1.85e-15 73.2
Msa0799520 MtrunA17_Chr1g0149391 51.429 70 32 1 2 71 9 76 1.87e-15 73.2
Msa0799520 MtrunA17_Chr5g0419601 50.704 71 33 1 1 71 8 76 2.07e-15 72.8
Msa0799520 MtrunA17_Chr1g0206721 40.187 107 56 3 2 102 9 113 2.07e-15 72.8
Msa0799520 MtrunA17_Chr4g0052081 45.070 71 37 1 1 71 1 69 2.41e-15 71.6
Msa0799520 MtrunA17_Chr2g0292791 51.429 70 32 1 2 71 9 76 2.41e-15 72.8
Msa0799520 MtrunA17_Chr3g0089141 50.000 70 33 1 2 71 9 76 3.40e-15 72.0
Msa0799520 MtrunA17_Chr2g0317481 50.000 70 33 1 2 71 9 76 3.40e-15 72.4
Msa0799520 MtrunA17_Chr1g0208561 50.000 70 33 1 2 71 9 76 3.43e-15 72.0
Msa0799520 MtrunA17_Chr4g0052061 50.000 60 30 0 1 60 1 60 3.46e-15 70.5
Msa0799520 MtrunA17_Chr2g0317451 50.000 70 33 1 2 71 9 76 3.61e-15 72.0
Msa0799520 MtrunA17_Chr1g0166611 42.857 91 44 3 13 96 17 106 3.88e-15 69.7
Msa0799520 MtrunA17_Chr3g0099411 37.815 119 60 3 2 108 9 125 4.10e-15 71.6
Msa0799520 MtrunA17_Chr1g0187361 50.000 70 33 1 2 71 9 76 4.25e-15 72.0
Msa0799520 MtrunA17_Chr1g0175611 48.387 62 32 0 1 62 1 62 4.40e-15 70.5
Msa0799520 MtrunA17_Chr1g0188671 51.429 70 32 1 2 71 47 114 5.60e-15 72.4
Msa0799520 MtrunA17_Chr1g0206991 39.252 107 57 3 2 102 9 113 6.69e-15 70.5
Msa0799520 MtrunA17_Chr1g0208581 50.000 70 33 1 2 71 9 76 1.73e-14 70.1
Msa0799520 MtrunA17_Chr2g0325971 48.571 70 34 1 2 71 9 76 3.54e-14 69.3
Msa0799520 MtrunA17_Chr5g0422421 50.000 70 33 1 2 71 9 76 3.66e-14 69.3
Msa0799520 MtrunA17_Chr1g0175601 46.774 62 33 0 1 62 1 62 3.79e-14 68.2
Msa0799520 MtrunA17_Chr5g0417661 51.515 66 26 1 1 66 56 115 3.94e-14 67.0
Msa0799520 MtrunA17_Chr5g0422941 48.571 70 34 1 2 71 9 76 4.13e-14 69.3
Msa0799520 MtrunA17_Chr4g0060841 37.063 143 80 6 1 142 1 134 5.71e-14 70.1
Msa0799520 MtrunA17_Chr6g0457851 29.375 160 96 5 1 148 11 165 8.22e-14 69.7
Msa0799520 MtrunA17_Chr4g0018951 36.923 130 62 5 15 132 25 146 1.03e-13 67.0
Msa0799520 MtrunA17_Chr3g0089151 45.714 70 36 1 2 71 9 76 1.07e-12 63.2
Msa0799520 MtrunA17_Chr2g0300441 47.222 72 34 2 2 71 7 76 2.29e-12 64.3
Msa0799520 MtrunA17_Chr3g0119901 43.662 71 38 1 1 71 8 76 2.35e-12 63.9
Msa0799520 MtrunA17_Chr6g0449851 30.822 146 89 4 1 136 1 144 4.57e-12 64.3
Msa0799520 MtrunA17_Chr2g0300421 46.032 63 34 0 2 64 9 71 7.19e-12 62.0
Msa0799520 MtrunA17_Chr1g0206691 36.735 98 54 3 11 102 1 96 1.45e-11 62.0
Msa0799520 MtrunA17_Chr3g0111841 47.368 57 30 0 8 64 2 58 1.73e-11 58.2
Msa0799520 MtrunA17_Chr3g0085241 40.845 71 40 1 1 71 40 108 3.15e-11 61.2
Msa0799520 MtrunA17_Chr1g0187351 45.902 61 31 1 11 71 1 59 3.91e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0799520 AT3G54340.1 48.182 220 110 2 1 220 1 216 1.46e-64 200
Msa0799520 AT5G20240.2 43.972 141 75 2 1 141 1 137 1.12e-33 119
Msa0799520 AT5G20240.1 41.333 150 84 2 1 150 1 146 1.63e-33 120
Msa0799520 AT2G42830.2 36.453 203 104 5 1 186 16 210 7.36e-32 117
Msa0799520 AT5G60910.1 41.341 179 97 4 1 175 1 175 9.78e-32 116
Msa0799520 AT4G11880.2 41.818 165 81 5 1 158 1 157 2.53e-31 114
Msa0799520 AT4G11880.3 41.818 165 81 5 1 158 1 157 2.53e-31 114
Msa0799520 AT3G58780.5 37.433 187 102 4 1 180 22 200 2.41e-30 113
Msa0799520 AT3G58780.1 37.433 187 102 4 1 180 16 194 3.02e-30 112
Msa0799520 AT4G11880.4 40.984 183 89 6 1 176 1 171 8.66e-30 110
Msa0799520 AT4G11880.1 40.984 183 89 6 1 176 1 171 8.66e-30 110
Msa0799520 AT2G42830.1 36.453 203 102 6 1 186 16 208 1.04e-29 111
Msa0799520 AT4G22950.2 36.571 175 95 4 1 168 1 166 1.69e-29 108
Msa0799520 AT5G13790.2 38.624 189 97 3 1 182 1 177 4.21e-29 110
Msa0799520 AT2G45650.1 36.723 177 102 4 1 173 1 171 5.75e-29 109
Msa0799520 AT4G22950.3 36.571 175 95 4 1 168 1 166 6.28e-29 108
Msa0799520 AT4G22950.1 36.571 175 95 4 1 168 1 166 6.28e-29 108
Msa0799520 AT5G51870.2 42.857 154 74 6 1 147 1 147 6.37e-29 107
Msa0799520 AT4G09960.6 37.766 188 84 6 1 173 2 171 6.47e-29 108
Msa0799520 AT4G09960.1 37.766 188 84 6 1 173 1 170 6.88e-29 108
Msa0799520 AT5G51870.4 39.037 187 100 6 1 180 1 180 6.91e-29 108
Msa0799520 AT5G51870.1 40.223 179 93 6 1 172 1 172 7.57e-29 108
Msa0799520 AT4G09960.5 37.766 188 84 6 1 173 11 180 8.56e-29 108
Msa0799520 AT5G51870.3 39.037 187 100 6 1 180 11 190 9.95e-29 108
Msa0799520 AT5G51870.5 42.857 154 74 6 1 147 24 170 1.02e-28 107
Msa0799520 AT3G58780.2 36.898 187 96 4 1 180 16 187 1.14e-28 108
Msa0799520 AT5G13790.1 39.011 182 103 3 1 182 1 174 1.22e-28 109
Msa0799520 AT4G09960.3 37.766 188 84 6 1 173 27 196 1.96e-28 108
Msa0799520 AT4G18960.1 40.556 180 88 6 2 173 18 186 2.55e-28 108
Msa0799520 AT3G58780.4 42.384 151 72 4 1 144 16 158 2.72e-28 108
Msa0799520 AT3G61120.1 37.288 177 102 4 1 174 1 171 3.44e-28 107
Msa0799520 AT5G62165.3 36.559 186 101 5 1 180 1 175 6.34e-28 105
Msa0799520 AT5G62165.1 36.559 186 101 5 1 180 1 175 6.34e-28 105
Msa0799520 AT5G62165.2 36.559 186 101 5 1 180 1 175 6.34e-28 105
Msa0799520 AT1G69120.2 34.946 186 99 5 1 175 1 175 7.04e-28 106
Msa0799520 AT1G69120.1 34.946 186 99 5 1 175 1 175 9.13e-28 106
Msa0799520 AT4G09960.2 40.506 158 63 5 1 143 1 142 1.07e-27 105
Msa0799520 AT5G62165.17 37.805 164 89 4 1 158 1 157 1.12e-27 103
Msa0799520 AT5G62165.12 37.805 164 89 4 1 158 1 157 1.12e-27 103
Msa0799520 AT5G62165.11 37.805 164 89 4 1 158 1 157 1.12e-27 103
Msa0799520 AT1G24260.1 37.778 180 102 4 1 174 1 176 1.24e-27 106
Msa0799520 AT5G62165.6 39.216 153 80 4 1 147 1 146 1.33e-27 103
Msa0799520 AT5G62165.9 39.216 153 80 4 1 147 1 146 1.33e-27 103
Msa0799520 AT5G62165.7 39.216 153 80 4 1 147 1 146 1.33e-27 103
Msa0799520 AT5G62165.8 39.216 153 80 4 1 147 1 146 1.33e-27 103
Msa0799520 AT5G62165.13 39.216 153 80 4 1 147 1 146 1.33e-27 103
Msa0799520 AT1G24260.2 37.569 181 102 4 1 174 1 177 1.40e-27 105
Msa0799520 AT4G09960.4 36.842 190 87 6 1 173 96 269 1.60e-27 107
Msa0799520 AT5G15800.1 38.983 177 98 5 1 172 1 172 2.48e-27 105
Msa0799520 AT5G15800.2 38.983 177 98 5 1 172 1 172 3.15e-27 105
Msa0799520 AT3G58780.3 33.810 210 103 4 1 180 16 219 6.05e-27 104
Msa0799520 AT3G02310.2 43.448 145 72 5 1 140 1 140 6.42e-27 103
Msa0799520 AT1G26310.1 34.574 188 99 5 1 175 1 177 7.49e-27 104
Msa0799520 AT2G45660.2 39.024 164 89 4 1 159 1 158 7.88e-27 101
Msa0799520 AT3G02310.1 43.448 145 72 5 1 140 1 140 1.70e-26 103
Msa0799520 AT2G45660.1 38.150 173 96 4 1 168 1 167 1.88e-26 102
Msa0799520 AT2G03710.2 33.679 193 122 3 1 190 1 190 1.91e-26 103
Msa0799520 AT2G03710.3 39.726 146 82 3 1 143 1 143 2.15e-26 101
Msa0799520 AT2G03710.1 33.679 193 122 3 1 190 1 190 2.18e-26 103
Msa0799520 AT5G23260.2 38.889 180 96 4 1 174 1 172 4.52e-26 102
Msa0799520 AT1G24260.3 37.427 171 96 4 1 164 1 167 5.18e-26 101
Msa0799520 AT5G23260.4 38.889 180 96 4 1 174 17 188 6.83e-26 102
Msa0799520 AT3G30260.1 40.132 152 81 5 1 147 1 147 1.07e-25 100
Msa0799520 AT4G37940.4 32.456 228 119 7 1 218 1 203 1.45e-25 99.8
Msa0799520 AT5G62165.10 39.597 149 77 4 1 143 1 142 4.31e-25 98.2
Msa0799520 AT5G62165.4 39.597 149 77 4 1 143 1 142 4.31e-25 98.2
Msa0799520 AT3G57230.1 31.933 238 126 9 1 218 1 222 1.08e-24 98.2
Msa0799520 AT3G57230.4 31.933 238 126 9 1 218 1 222 1.08e-24 98.2
Msa0799520 AT3G57230.2 36.306 157 78 5 1 147 1 145 1.98e-24 95.1
Msa0799520 AT4G37940.3 37.255 153 74 4 1 143 1 141 2.17e-24 95.9
Msa0799520 AT3G57390.3 36.747 166 89 4 1 155 1 161 2.66e-24 97.1
Msa0799520 AT3G57390.1 36.747 166 89 4 1 155 1 161 4.18e-24 97.1
Msa0799520 AT4G37940.1 34.831 178 94 5 1 168 1 166 7.21e-24 95.9
Msa0799520 AT5G23260.1 38.889 180 91 5 1 174 17 183 1.27e-23 95.9
Msa0799520 AT5G62165.14 55.844 77 32 1 1 77 1 75 2.78e-23 90.9
Msa0799520 AT5G51860.2 34.615 182 115 3 1 180 1 180 6.03e-23 92.8
Msa0799520 AT5G65070.4 37.086 151 85 5 1 150 1 142 7.47e-23 90.9
Msa0799520 AT5G23260.3 41.611 149 73 4 1 143 1 141 1.15e-22 92.8
Msa0799520 AT2G22540.3 37.349 166 85 6 1 157 1 156 1.97e-22 92.0
Msa0799520 AT2G22540.1 37.349 166 85 6 1 157 1 156 1.97e-22 92.0
Msa0799520 AT4G24540.1 40.789 152 79 5 1 147 1 146 3.01e-22 91.3
Msa0799520 AT5G51860.1 36.196 163 100 3 1 161 1 161 4.20e-22 90.5
Msa0799520 AT5G65070.1 35.503 169 99 5 1 168 1 160 8.67e-22 89.7
Msa0799520 AT2G22630.1 32.903 155 86 3 1 147 1 145 1.49e-21 89.7
Msa0799520 AT2G22630.2 32.903 155 86 3 1 147 1 145 1.49e-21 89.7
Msa0799520 AT2G14210.1 31.556 225 124 8 1 208 1 212 3.01e-21 89.0
Msa0799520 AT2G14210.2 31.556 225 124 8 1 208 1 212 3.89e-21 88.6
Msa0799520 AT1G71692.1 35.135 185 105 4 1 174 1 181 1.05e-20 87.0
Msa0799520 AT5G10140.2 37.013 154 67 5 1 143 1 135 2.16e-20 85.1
Msa0799520 AT5G10140.4 34.320 169 81 5 1 158 1 150 2.43e-20 85.1
Msa0799520 AT2G22540.2 36.747 166 81 6 1 157 1 151 3.97e-20 85.9
Msa0799520 AT5G10140.3 37.013 154 67 5 1 143 1 135 4.98e-20 84.7
Msa0799520 AT5G10140.1 36.076 158 71 5 1 147 1 139 5.46e-20 84.7
Msa0799520 AT5G65050.1 33.333 165 88 5 1 158 1 150 4.32e-19 82.0
Msa0799520 AT5G65050.2 34.437 151 83 5 1 147 1 139 4.67e-19 81.6
Msa0799520 AT5G65060.3 33.766 154 80 5 1 147 1 139 4.82e-19 82.0
Msa0799520 AT5G65060.1 33.117 154 81 5 1 147 1 139 7.39e-19 81.6
Msa0799520 AT5G65050.3 31.351 185 105 5 1 178 1 170 9.10e-19 81.6
Msa0799520 AT5G65080.3 31.694 183 109 6 1 181 8 176 2.09e-18 80.5
Msa0799520 AT1G77080.5 34.659 176 105 5 1 175 1 167 2.18e-18 79.7
Msa0799520 AT1G22130.1 66.667 54 18 0 1 54 1 54 3.39e-18 82.4
Msa0799520 AT5G65070.3 30.412 194 107 6 1 168 1 192 4.33e-18 80.5
Msa0799520 AT1G77980.1 64.815 54 19 0 1 54 1 54 8.16e-18 81.3
Msa0799520 AT5G65070.5 32.432 185 94 6 1 158 1 181 1.07e-17 79.0
Msa0799520 AT5G65050.5 31.667 180 100 5 1 178 1 159 1.14e-17 78.2
Msa0799520 AT5G65070.2 31.795 195 102 6 1 168 1 191 1.28e-17 79.3
Msa0799520 AT5G65060.2 33.557 149 76 5 1 147 1 128 1.85e-17 77.8
Msa0799520 AT1G77080.11 34.320 169 101 5 1 168 1 160 3.59e-17 76.6
Msa0799520 AT1G77080.4 34.337 166 99 5 1 165 1 157 6.85e-17 76.3
Msa0799520 AT5G65080.2 31.818 154 82 3 1 147 8 145 3.00e-16 74.7
Msa0799520 AT1G47760.1 29.371 143 93 3 1 142 1 136 4.83e-15 71.2
Msa0799520 AT2G34440.1 39.241 79 46 1 1 79 1 77 6.19e-15 70.5
Msa0799520 AT2G03060.2 37.097 124 73 4 1 123 1 120 1.58e-14 72.4
Msa0799520 AT2G03060.3 37.097 124 73 4 1 123 1 120 1.59e-14 72.4
Msa0799520 AT2G03060.7 37.097 124 73 4 1 123 1 120 1.59e-14 72.4
Msa0799520 AT2G03060.1 37.097 124 73 4 1 123 1 120 1.59e-14 72.4
Msa0799520 AT1G77950.3 55.556 54 24 0 1 54 1 54 1.81e-14 70.9
Msa0799520 AT1G77950.2 55.556 54 24 0 1 54 1 54 1.81e-14 70.9
Msa0799520 AT1G77950.1 55.556 54 24 0 1 54 1 54 1.81e-14 70.9
Msa0799520 AT1G77950.4 55.556 54 24 0 1 54 1 54 1.81e-14 70.9
Msa0799520 AT1G77080.12 31.875 160 95 5 1 159 1 147 2.11e-14 68.6
Msa0799520 AT1G77080.8 31.915 188 101 6 1 165 1 184 2.26e-14 70.1
Msa0799520 AT1G31140.2 34.000 150 87 3 1 143 1 145 2.55e-14 69.7
Msa0799520 AT1G72350.1 50.000 70 31 1 2 71 43 108 5.09e-14 69.3
Msa0799520 AT1G18750.1 38.235 102 58 1 1 102 1 97 7.71e-14 70.5
Msa0799520 AT1G18750.4 38.235 102 58 1 1 102 1 97 7.93e-14 70.1
Msa0799520 AT1G31140.1 43.836 73 41 0 1 73 1 73 7.99e-14 68.6
Msa0799520 AT1G18750.3 38.235 102 58 1 1 102 1 97 9.84e-14 70.1
Msa0799520 AT1G77080.2 31.325 166 100 5 1 165 1 153 1.42e-13 67.4
Msa0799520 AT3G66656.1 45.161 62 34 0 1 62 1 62 2.80e-13 66.2
Msa0799520 AT3G04100.1 33.884 121 76 2 2 122 14 130 3.12e-13 66.6
Msa0799520 AT1G01530.1 44.928 69 36 1 1 69 6 72 4.75e-13 67.0
Msa0799520 AT5G60440.1 44.286 70 37 1 2 71 7 74 3.03e-12 65.1
Msa0799520 AT1G69540.1 58.491 53 22 0 1 53 1 53 5.73e-12 64.7
Msa0799520 AT1G69540.2 58.491 53 22 0 1 53 1 53 6.68e-12 64.7
Msa0799520 AT4G37435.1 47.368 57 30 0 1 57 1 57 8.40e-12 62.4
Msa0799520 AT1G65360.1 45.161 62 34 0 1 62 6 67 8.51e-12 63.2
Msa0799520 AT4G36590.1 50.820 61 30 0 2 62 7 67 3.05e-11 62.0
Msa0799520 AT2G24840.1 42.254 71 39 1 1 71 62 130 5.06e-11 61.2

Find 51 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTTGAGCAACTGAATTAA+TGG 0.274585 5_3:+12757686 Msa0799520:exon
GATCAATATCAGAAGACTTT+GGG 0.288044 5_3:+12756004 Msa0799520:CDS
CTCTACCTAGATGGAGAGTT+TGG 0.288328 5_3:-12757836 None:intergenic
GTAGTGAAGATCATTGAAAA+TGG 0.320341 5_3:+12755672 Msa0799520:exon
CTTCAAGACTACGCAGTTGC+TGG 0.371095 5_3:-12756312 None:intergenic
AGGTGAGGGTGGTATGGAAT+TGG 0.393769 5_3:+12756276 Msa0799520:CDS
GACTGATACCTGTAGGAAAA+AGG 0.396405 5_3:+12757055 Msa0799520:CDS
TGATCAATATCAGAAGACTT+TGG 0.413026 5_3:+12756003 Msa0799520:CDS
ACATACTCAAAGAGAAGAAA+TGG 0.436448 5_3:+12755748 Msa0799520:CDS
TGATTGAGAATCCTACTAAC+AGG 0.439798 5_3:+12755719 Msa0799520:CDS
TTGCTAATTCTCTACCTAGA+TGG 0.464851 5_3:-12757845 None:intergenic
TAGTGTTCTTTGTGATGCTA+AGG 0.479256 5_3:+12755795 Msa0799520:CDS
TAATATGCAGGTTAGAAGCT+TGG 0.482048 5_3:+12757170 Msa0799520:intron
CCTCATCACCATGGAGAAGA+AGG 0.482086 5_3:+12757639 Msa0799520:CDS
TATGTCACTTGCCTGTTAGT+AGG 0.489132 5_3:-12755730 None:intergenic
TAGAATAGGTGAGGGTGGTA+TGG 0.489353 5_3:+12756270 Msa0799520:CDS
TGGTTCCAAACTCTCCATCT+AGG 0.489403 5_3:+12757831 Msa0799520:three_prime_UTR
TATCACATTAAACTAAAAGT+TGG 0.492089 5_3:+12757811 Msa0799520:three_prime_UTR
TACGCAGTTGCTGGAAGCTA+AGG 0.503900 5_3:-12756303 None:intergenic
TGAATTGAAAGGCATAGAAT+AGG 0.506301 5_3:+12756256 Msa0799520:intron
TAGTGAAGATCATTGAAAAT+GGG 0.509413 5_3:+12755673 Msa0799520:exon
GATAGTACTTACGTTAGTCC+AGG 0.515987 5_3:-12755868 None:intergenic
CGAGGAATCAGCAGTTGCAT+TGG 0.519957 5_3:+12757560 Msa0799520:CDS
AAGCAAATTTAACATGACAT+TGG 0.535516 5_3:-12757711 None:intergenic
ATAAGCTTAGAAAACAGATC+AGG 0.539761 5_3:+12756166 Msa0799520:CDS
ATACAGAGTGGAAGCACCAT+TGG 0.546264 5_3:-12757583 None:intergenic
AGAAGCTTGGAGCAGATGAA+TGG 0.546698 5_3:+12757183 Msa0799520:CDS
ATCAATATCAGAAGACTTTG+GGG 0.560571 5_3:+12756005 Msa0799520:CDS
ATAGTACTTACGTTAGTCCA+GGG 0.566211 5_3:-12755867 None:intergenic
CCTTCTTCTCCATGGTGATG+AGG 0.566535 5_3:-12757639 None:intergenic
AGATCATTGAAAATGGGTCG+TGG 0.568091 5_3:+12755679 Msa0799520:exon
CGTGGAAAAGAAATTGTGGA+TGG 0.571656 5_3:-12757527 None:intergenic
TTTCCACGACGAAGGAGACG+AGG 0.578253 5_3:+12757542 Msa0799520:CDS
ATGCATGAGTACATCACCCC+TGG 0.578439 5_3:+12755850 Msa0799520:CDS
TCAGCAGTTGCATTGGCCAA+TGG 0.579080 5_3:+12757567 Msa0799520:CDS
TCGTCGTGGAAAAGAAATTG+TGG 0.590379 5_3:-12757531 None:intergenic
TGAAAGGCATAGAATAGGTG+AGG 0.590421 5_3:+12756261 Msa0799520:intron
GCAACTGCGTAGTCTTGAAG+AGG 0.601885 5_3:+12756315 Msa0799520:CDS
GATCATTGAAAATGGGTCGT+GGG 0.604178 5_3:+12755680 Msa0799520:exon
AGGCATAGAATAGGTGAGGG+TGG 0.608397 5_3:+12756265 Msa0799520:intron
CTGAATCTTCCTCATCACCA+TGG 0.615189 5_3:+12757630 Msa0799520:CDS
TTAATTCAGTTGCTCAACCA+AGG 0.617007 5_3:-12757683 None:intergenic
AAACTCGGACTGATACCTGT+AGG 0.623665 5_3:+12757048 Msa0799520:CDS
GAGGAAGATTCAGATGAGAA+TGG 0.625361 5_3:-12757620 None:intergenic
ATTCCTCGTCTCCTTCGTCG+TGG 0.643427 5_3:-12757545 None:intergenic
TCTGTGGCGTTCTCACTATG+AGG 0.645842 5_3:+12756036 Msa0799520:CDS
AGTTTCATGTGATCAAAACT+CGG 0.647118 5_3:+12757033 Msa0799520:intron
GAAAGGCATAGAATAGGTGA+GGG 0.655347 5_3:+12756262 Msa0799520:intron
CTGACAGAATGCATACAGAG+TGG 0.686982 5_3:-12757595 None:intergenic
TAGTACTTACGTTAGTCCAG+GGG 0.693878 5_3:-12755866 None:intergenic
TCAATATCAGAAGACTTTGG+GGG 0.712577 5_3:+12756006 Msa0799520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATATATTAATAATTTTT+TGG + chr5_3:12756208-12756227 Msa0799520:intron 0.0%
!!! TATATATATTAATAATTTTT+TGG + chr5_3:12756208-12756227 Msa0799520:intron 0.0%
!! TTATTAGTAGTATATAAAAG+AGG - chr5_3:12756618-12756637 None:intergenic 15.0%
!! ACTTTATATAAATAATATGC+AGG + chr5_3:12757158-12757177 Msa0799520:intron 15.0%
!! TTATTAGTAGTATATAAAAG+AGG - chr5_3:12756618-12756637 None:intergenic 15.0%
!! ACTTTATATAAATAATATGC+AGG + chr5_3:12757158-12757177 Msa0799520:intron 15.0%
!!! TTTGTTTTTAAGTTTTGTTG+AGG - chr5_3:12756643-12756662 None:intergenic 20.0%
!!! ATAGTTAGTTTGTTGATTTA+TGG + chr5_3:12756749-12756768 Msa0799520:intron 20.0%
!! ATAAAGTTTAAATAGACCAT+AGG - chr5_3:12757145-12757164 None:intergenic 20.0%
!! ATGATTTATATATAGAGAAG+AGG + chr5_3:12757442-12757461 Msa0799520:intron 20.0%
!! TATCACATTAAACTAAAAGT+TGG + chr5_3:12757811-12757830 Msa0799520:three_prime_UTR 20.0%
!!! TTTGTTTTTAAGTTTTGTTG+AGG - chr5_3:12756643-12756662 None:intergenic 20.0%
!!! ATAGTTAGTTTGTTGATTTA+TGG + chr5_3:12756749-12756768 Msa0799520:intron 20.0%
!! ATAAAGTTTAAATAGACCAT+AGG - chr5_3:12757145-12757164 None:intergenic 20.0%
!! ATGATTTATATATAGAGAAG+AGG + chr5_3:12757442-12757461 Msa0799520:intron 20.0%
!! TATCACATTAAACTAAAAGT+TGG + chr5_3:12757811-12757830 Msa0799520:three_prime_UTR 20.0%
! TAGTGAAGATCATTGAAAAT+GGG + chr5_3:12755673-12755692 Msa0799520:exon 25.0%
! ATCAATAATCTTCTTTGTAC+TGG - chr5_3:12755987-12756006 None:intergenic 25.0%
!!! GATTTTAATGTGAATTTGTG+TGG + chr5_3:12756097-12756116 Msa0799520:intron 25.0%
!!! ATTTTTTGGTGAAATCTGAT+TGG + chr5_3:12756222-12756241 Msa0799520:intron 25.0%
!! CAATACTACTTCCAATTTTA+TGG + chr5_3:12756383-12756402 Msa0799520:intron 25.0%
! GAATTGAAGATCCATAAAAT+TGG - chr5_3:12756397-12756416 None:intergenic 25.0%
!!! TTTTGAGTAACTTGTAGAAA+GGG - chr5_3:12756457-12756476 None:intergenic 25.0%
! TTTGAAGATGTGACTTAATT+AGG + chr5_3:12756543-12756562 Msa0799520:intron 25.0%
!! TATATTGTCATGTTGTGTTT+TGG + chr5_3:12756994-12757013 Msa0799520:intron 25.0%
! ATGTGAATTTGATAAACCTA+TGG + chr5_3:12757126-12757145 Msa0799520:intron 25.0%
! AGAGACTGAAATAATAAAAG+TGG - chr5_3:12757350-12757369 None:intergenic 25.0%
! ATTATTTCAGTCTCTAATTG+CGG + chr5_3:12757355-12757374 Msa0799520:intron 25.0%
! TATTCCATTCACACAATAAA+AGG - chr5_3:12757482-12757501 None:intergenic 25.0%
! TGAATGGAATAACAATAAGA+AGG + chr5_3:12757491-12757510 Msa0799520:intron 25.0%
! AAGCAAATTTAACATGACAT+TGG - chr5_3:12757714-12757733 None:intergenic 25.0%
! TAGTGAAGATCATTGAAAAT+GGG + chr5_3:12755673-12755692 Msa0799520:exon 25.0%
! ATCAATAATCTTCTTTGTAC+TGG - chr5_3:12755987-12756006 None:intergenic 25.0%
!!! GATTTTAATGTGAATTTGTG+TGG + chr5_3:12756097-12756116 Msa0799520:intron 25.0%
!!! ATTTTTTGGTGAAATCTGAT+TGG + chr5_3:12756222-12756241 Msa0799520:intron 25.0%
!! CAATACTACTTCCAATTTTA+TGG + chr5_3:12756383-12756402 Msa0799520:intron 25.0%
! GAATTGAAGATCCATAAAAT+TGG - chr5_3:12756397-12756416 None:intergenic 25.0%
!!! TTTTGAGTAACTTGTAGAAA+GGG - chr5_3:12756457-12756476 None:intergenic 25.0%
! TTTGAAGATGTGACTTAATT+AGG + chr5_3:12756543-12756562 Msa0799520:intron 25.0%
!! TATATTGTCATGTTGTGTTT+TGG + chr5_3:12756994-12757013 Msa0799520:intron 25.0%
! ATGTGAATTTGATAAACCTA+TGG + chr5_3:12757126-12757145 Msa0799520:intron 25.0%
! AGAGACTGAAATAATAAAAG+TGG - chr5_3:12757350-12757369 None:intergenic 25.0%
! ATTATTTCAGTCTCTAATTG+CGG + chr5_3:12757355-12757374 Msa0799520:intron 25.0%
! TATTCCATTCACACAATAAA+AGG - chr5_3:12757482-12757501 None:intergenic 25.0%
! TGAATGGAATAACAATAAGA+AGG + chr5_3:12757491-12757510 Msa0799520:intron 25.0%
! AAGCAAATTTAACATGACAT+TGG - chr5_3:12757714-12757733 None:intergenic 25.0%
GTAGTGAAGATCATTGAAAA+TGG + chr5_3:12755672-12755691 Msa0799520:exon 30.0%
ACATACTCAAAGAGAAGAAA+TGG + chr5_3:12755748-12755767 Msa0799520:CDS 30.0%
!!! CTCATGCATCTTGTTATTTT+TGG - chr5_3:12755839-12755858 None:intergenic 30.0%
TGATCAATATCAGAAGACTT+TGG + chr5_3:12756003-12756022 Msa0799520:CDS 30.0%
GATCAATATCAGAAGACTTT+GGG + chr5_3:12756004-12756023 Msa0799520:CDS 30.0%
ATCAATATCAGAAGACTTTG+GGG + chr5_3:12756005-12756024 Msa0799520:CDS 30.0%
! TGATCTGTTTTCTAAGCTTA+TGG - chr5_3:12756167-12756186 None:intergenic 30.0%
ATAAGCTTAGAAAACAGATC+AGG + chr5_3:12756166-12756185 Msa0799520:CDS 30.0%
! TGAATTGAAAGGCATAGAAT+AGG + chr5_3:12756256-12756275 Msa0799520:intron 30.0%
GTAGAAAGGGTGAAAATAAA+GGG - chr5_3:12756444-12756463 None:intergenic 30.0%
TGTAGAAAGGGTGAAAATAA+AGG - chr5_3:12756445-12756464 None:intergenic 30.0%
!! CTTTTGAGTAACTTGTAGAA+AGG - chr5_3:12756458-12756477 None:intergenic 30.0%
TTTCTATCTATCAAGCTCTA+AGG + chr5_3:12756864-12756883 Msa0799520:intron 30.0%
ATATCAGCTTAAAGACTTCA+AGG - chr5_3:12756977-12756996 None:intergenic 30.0%
AGTTTCATGTGATCAAAACT+CGG + chr5_3:12757033-12757052 Msa0799520:intron 30.0%
TCACATGAGCAAGAAAAAAA+TGG - chr5_3:12757112-12757131 None:intergenic 30.0%
ATAAAAGTGGTCACCAAATT+TGG - chr5_3:12757337-12757356 None:intergenic 30.0%
! GTTTCCTTTTATTGTGTGAA+TGG + chr5_3:12757475-12757494 Msa0799520:intron 30.0%
!!! TGTTTTATTTGCAAGAAGTG+TGG + chr5_3:12757880-12757899 Msa0799520:three_prime_UTR 30.0%
GTAGTGAAGATCATTGAAAA+TGG + chr5_3:12755672-12755691 Msa0799520:exon 30.0%
ACATACTCAAAGAGAAGAAA+TGG + chr5_3:12755748-12755767 Msa0799520:CDS 30.0%
!!! CTCATGCATCTTGTTATTTT+TGG - chr5_3:12755839-12755858 None:intergenic 30.0%
TGATCAATATCAGAAGACTT+TGG + chr5_3:12756003-12756022 Msa0799520:CDS 30.0%
GATCAATATCAGAAGACTTT+GGG + chr5_3:12756004-12756023 Msa0799520:CDS 30.0%
ATCAATATCAGAAGACTTTG+GGG + chr5_3:12756005-12756024 Msa0799520:CDS 30.0%
! TGATCTGTTTTCTAAGCTTA+TGG - chr5_3:12756167-12756186 None:intergenic 30.0%
ATAAGCTTAGAAAACAGATC+AGG + chr5_3:12756166-12756185 Msa0799520:CDS 30.0%
! TGAATTGAAAGGCATAGAAT+AGG + chr5_3:12756256-12756275 Msa0799520:intron 30.0%
GTAGAAAGGGTGAAAATAAA+GGG - chr5_3:12756444-12756463 None:intergenic 30.0%
TGTAGAAAGGGTGAAAATAA+AGG - chr5_3:12756445-12756464 None:intergenic 30.0%
!! CTTTTGAGTAACTTGTAGAA+AGG - chr5_3:12756458-12756477 None:intergenic 30.0%
TTTCTATCTATCAAGCTCTA+AGG + chr5_3:12756864-12756883 Msa0799520:intron 30.0%
ATATCAGCTTAAAGACTTCA+AGG - chr5_3:12756977-12756996 None:intergenic 30.0%
AGTTTCATGTGATCAAAACT+CGG + chr5_3:12757033-12757052 Msa0799520:intron 30.0%
TCACATGAGCAAGAAAAAAA+TGG - chr5_3:12757112-12757131 None:intergenic 30.0%
ATAAAAGTGGTCACCAAATT+TGG - chr5_3:12757337-12757356 None:intergenic 30.0%
! GTTTCCTTTTATTGTGTGAA+TGG + chr5_3:12757475-12757494 Msa0799520:intron 30.0%
TGATTGAGAATCCTACTAAC+AGG + chr5_3:12755719-12755738 Msa0799520:CDS 35.0%
TAGTGTTCTTTGTGATGCTA+AGG + chr5_3:12755795-12755814 Msa0799520:CDS 35.0%
ATAGTACTTACGTTAGTCCA+GGG - chr5_3:12755870-12755889 None:intergenic 35.0%
TCAATATCAGAAGACTTTGG+GGG + chr5_3:12756006-12756025 Msa0799520:CDS 35.0%
! TTTTGGTGAAATCTGATTGG+TGG + chr5_3:12756225-12756244 Msa0799520:intron 35.0%
TGGAGTTGTGATGAATTGAA+AGG + chr5_3:12756245-12756264 Msa0799520:intron 35.0%
!! CCTTTCACGTATTTTTGCAA+TGG - chr5_3:12756353-12756372 None:intergenic 35.0%
CCATTGCAAAAATACGTGAA+AGG + chr5_3:12756350-12756369 Msa0799520:CDS 35.0%
TGCAAAAATACGTGAAAGGA+AGG + chr5_3:12756354-12756373 Msa0799520:CDS 35.0%
! TGCTCAATGTATAGAGCTTT+TGG - chr5_3:12756791-12756810 None:intergenic 35.0%
ATTCCATTGCTAAGTGATGA+AGG - chr5_3:12756912-12756931 None:intergenic 35.0%
TAATATGCAGGTTAGAAGCT+TGG + chr5_3:12757170-12757189 Msa0799520:intron 35.0%
! TTTTGTAACCTTCTTCTCCA+TGG - chr5_3:12757650-12757669 None:intergenic 35.0%
TTAATTCAGTTGCTCAACCA+AGG - chr5_3:12757686-12757705 None:intergenic 35.0%
TGGTTGAGCAACTGAATTAA+TGG + chr5_3:12757686-12757705 Msa0799520:exon 35.0%
TTGCTAATTCTCTACCTAGA+TGG - chr5_3:12757848-12757867 None:intergenic 35.0%
! TTTATTTGCAAGAAGTGTGG+TGG + chr5_3:12757883-12757902 Msa0799520:three_prime_UTR 35.0%
TGATTGAGAATCCTACTAAC+AGG + chr5_3:12755719-12755738 Msa0799520:CDS 35.0%
TAGTGTTCTTTGTGATGCTA+AGG + chr5_3:12755795-12755814 Msa0799520:CDS 35.0%
ATAGTACTTACGTTAGTCCA+GGG - chr5_3:12755870-12755889 None:intergenic 35.0%
TCAATATCAGAAGACTTTGG+GGG + chr5_3:12756006-12756025 Msa0799520:CDS 35.0%
! TTTTGGTGAAATCTGATTGG+TGG + chr5_3:12756225-12756244 Msa0799520:intron 35.0%
TGGAGTTGTGATGAATTGAA+AGG + chr5_3:12756245-12756264 Msa0799520:intron 35.0%
!! CCTTTCACGTATTTTTGCAA+TGG - chr5_3:12756353-12756372 None:intergenic 35.0%
CCATTGCAAAAATACGTGAA+AGG + chr5_3:12756350-12756369 Msa0799520:CDS 35.0%
TGCAAAAATACGTGAAAGGA+AGG + chr5_3:12756354-12756373 Msa0799520:CDS 35.0%
! TGCTCAATGTATAGAGCTTT+TGG - chr5_3:12756791-12756810 None:intergenic 35.0%
ATTCCATTGCTAAGTGATGA+AGG - chr5_3:12756912-12756931 None:intergenic 35.0%
TAATATGCAGGTTAGAAGCT+TGG + chr5_3:12757170-12757189 Msa0799520:intron 35.0%
! TTTTGTAACCTTCTTCTCCA+TGG - chr5_3:12757650-12757669 None:intergenic 35.0%
TTAATTCAGTTGCTCAACCA+AGG - chr5_3:12757686-12757705 None:intergenic 35.0%
TGGTTGAGCAACTGAATTAA+TGG + chr5_3:12757686-12757705 Msa0799520:exon 35.0%
TTGCTAATTCTCTACCTAGA+TGG - chr5_3:12757848-12757867 None:intergenic 35.0%
AGATCATTGAAAATGGGTCG+TGG + chr5_3:12755679-12755698 Msa0799520:exon 40.0%
GATCATTGAAAATGGGTCGT+GGG + chr5_3:12755680-12755699 Msa0799520:exon 40.0%
! TATGTCACTTGCCTGTTAGT+AGG - chr5_3:12755733-12755752 None:intergenic 40.0%
TAGTACTTACGTTAGTCCAG+GGG - chr5_3:12755869-12755888 None:intergenic 40.0%
GATAGTACTTACGTTAGTCC+AGG - chr5_3:12755871-12755890 None:intergenic 40.0%
! TGAAAGGCATAGAATAGGTG+AGG + chr5_3:12756261-12756280 Msa0799520:intron 40.0%
! GAAAGGCATAGAATAGGTGA+GGG + chr5_3:12756262-12756281 Msa0799520:intron 40.0%
GAACCTTCATCACTTAGCAA+TGG + chr5_3:12756906-12756925 Msa0799520:intron 40.0%
GACTGATACCTGTAGGAAAA+AGG + chr5_3:12757055-12757074 Msa0799520:CDS 40.0%
! ATTGCTGACCTTTTTCCTAC+AGG - chr5_3:12757066-12757085 None:intergenic 40.0%
CGTGGAAAAGAAATTGTGGA+TGG - chr5_3:12757530-12757549 None:intergenic 40.0%
TCGTCGTGGAAAAGAAATTG+TGG - chr5_3:12757534-12757553 None:intergenic 40.0%
! CAATTTCTTTTCCACGACGA+AGG + chr5_3:12757534-12757553 Msa0799520:CDS 40.0%
GAGGAAGATTCAGATGAGAA+TGG - chr5_3:12757623-12757642 None:intergenic 40.0%
AGATCATTGAAAATGGGTCG+TGG + chr5_3:12755679-12755698 Msa0799520:exon 40.0%
GATCATTGAAAATGGGTCGT+GGG + chr5_3:12755680-12755699 Msa0799520:exon 40.0%
! TATGTCACTTGCCTGTTAGT+AGG - chr5_3:12755733-12755752 None:intergenic 40.0%
TAGTACTTACGTTAGTCCAG+GGG - chr5_3:12755869-12755888 None:intergenic 40.0%
GATAGTACTTACGTTAGTCC+AGG - chr5_3:12755871-12755890 None:intergenic 40.0%
! TGAAAGGCATAGAATAGGTG+AGG + chr5_3:12756261-12756280 Msa0799520:intron 40.0%
! GAAAGGCATAGAATAGGTGA+GGG + chr5_3:12756262-12756281 Msa0799520:intron 40.0%
GAACCTTCATCACTTAGCAA+TGG + chr5_3:12756906-12756925 Msa0799520:intron 40.0%
GACTGATACCTGTAGGAAAA+AGG + chr5_3:12757055-12757074 Msa0799520:CDS 40.0%
! ATTGCTGACCTTTTTCCTAC+AGG - chr5_3:12757066-12757085 None:intergenic 40.0%
CGTGGAAAAGAAATTGTGGA+TGG - chr5_3:12757530-12757549 None:intergenic 40.0%
TCGTCGTGGAAAAGAAATTG+TGG - chr5_3:12757534-12757553 None:intergenic 40.0%
! CAATTTCTTTTCCACGACGA+AGG + chr5_3:12757534-12757553 Msa0799520:CDS 40.0%
GAGGAAGATTCAGATGAGAA+TGG - chr5_3:12757623-12757642 None:intergenic 40.0%
! CTTTGGGGGATATAGATCTG+TGG + chr5_3:12756020-12756039 Msa0799520:CDS 45.0%
TAGAATAGGTGAGGGTGGTA+TGG + chr5_3:12756270-12756289 Msa0799520:CDS 45.0%
AAACTCGGACTGATACCTGT+AGG + chr5_3:12757048-12757067 Msa0799520:CDS 45.0%
AGAAGCTTGGAGCAGATGAA+TGG + chr5_3:12757183-12757202 Msa0799520:CDS 45.0%
ATTTGGCGTCTCTAACACGA+CGG - chr5_3:12757320-12757339 None:intergenic 45.0%
CGTGTTAGAGACGCCAAATT+TGG + chr5_3:12757321-12757340 Msa0799520:intron 45.0%
!! ATACAGAGTGGAAGCACCAT+TGG - chr5_3:12757586-12757605 None:intergenic 45.0%
CTGACAGAATGCATACAGAG+TGG - chr5_3:12757598-12757617 None:intergenic 45.0%
CTGAATCTTCCTCATCACCA+TGG + chr5_3:12757630-12757649 Msa0799520:CDS 45.0%
AAAAACGACGATTTGCGCCT+TGG + chr5_3:12757666-12757685 Msa0799520:CDS 45.0%
TGGTTCCAAACTCTCCATCT+AGG + chr5_3:12757831-12757850 Msa0799520:three_prime_UTR 45.0%
CTCTACCTAGATGGAGAGTT+TGG - chr5_3:12757839-12757858 None:intergenic 45.0%
! CTTTGGGGGATATAGATCTG+TGG + chr5_3:12756020-12756039 Msa0799520:CDS 45.0%
TAGAATAGGTGAGGGTGGTA+TGG + chr5_3:12756270-12756289 Msa0799520:CDS 45.0%
AAACTCGGACTGATACCTGT+AGG + chr5_3:12757048-12757067 Msa0799520:CDS 45.0%
AGAAGCTTGGAGCAGATGAA+TGG + chr5_3:12757183-12757202 Msa0799520:CDS 45.0%
ATTTGGCGTCTCTAACACGA+CGG - chr5_3:12757320-12757339 None:intergenic 45.0%
CGTGTTAGAGACGCCAAATT+TGG + chr5_3:12757321-12757340 Msa0799520:intron 45.0%
!! ATACAGAGTGGAAGCACCAT+TGG - chr5_3:12757586-12757605 None:intergenic 45.0%
CTGACAGAATGCATACAGAG+TGG - chr5_3:12757598-12757617 None:intergenic 45.0%
CTGAATCTTCCTCATCACCA+TGG + chr5_3:12757630-12757649 Msa0799520:CDS 45.0%
AAAAACGACGATTTGCGCCT+TGG + chr5_3:12757666-12757685 Msa0799520:CDS 45.0%
TGGTTCCAAACTCTCCATCT+AGG + chr5_3:12757831-12757850 Msa0799520:three_prime_UTR 45.0%
CTCTACCTAGATGGAGAGTT+TGG - chr5_3:12757839-12757858 None:intergenic 45.0%
ATGCATGAGTACATCACCCC+TGG + chr5_3:12755850-12755869 Msa0799520:CDS 50.0%
TCTGTGGCGTTCTCACTATG+AGG + chr5_3:12756036-12756055 Msa0799520:CDS 50.0%
AGGCATAGAATAGGTGAGGG+TGG + chr5_3:12756265-12756284 Msa0799520:intron 50.0%
AGGTGAGGGTGGTATGGAAT+TGG + chr5_3:12756276-12756295 Msa0799520:CDS 50.0%
TACGCAGTTGCTGGAAGCTA+AGG - chr5_3:12756306-12756325 None:intergenic 50.0%
CTTCAAGACTACGCAGTTGC+TGG - chr5_3:12756315-12756334 None:intergenic 50.0%
! GCAACTGCGTAGTCTTGAAG+AGG + chr5_3:12756315-12756334 Msa0799520:CDS 50.0%
CGAGGAATCAGCAGTTGCAT+TGG + chr5_3:12757560-12757579 Msa0799520:CDS 50.0%
! TCAGCAGTTGCATTGGCCAA+TGG + chr5_3:12757567-12757586 Msa0799520:CDS 50.0%
! CCTTCTTCTCCATGGTGATG+AGG - chr5_3:12757642-12757661 None:intergenic 50.0%
CCTCATCACCATGGAGAAGA+AGG + chr5_3:12757639-12757658 Msa0799520:CDS 50.0%
ATGCATGAGTACATCACCCC+TGG + chr5_3:12755850-12755869 Msa0799520:CDS 50.0%
TCTGTGGCGTTCTCACTATG+AGG + chr5_3:12756036-12756055 Msa0799520:CDS 50.0%
AGGCATAGAATAGGTGAGGG+TGG + chr5_3:12756265-12756284 Msa0799520:intron 50.0%
AGGTGAGGGTGGTATGGAAT+TGG + chr5_3:12756276-12756295 Msa0799520:CDS 50.0%
TACGCAGTTGCTGGAAGCTA+AGG - chr5_3:12756306-12756325 None:intergenic 50.0%
CTTCAAGACTACGCAGTTGC+TGG - chr5_3:12756315-12756334 None:intergenic 50.0%
! GCAACTGCGTAGTCTTGAAG+AGG + chr5_3:12756315-12756334 Msa0799520:CDS 50.0%
CGAGGAATCAGCAGTTGCAT+TGG + chr5_3:12757560-12757579 Msa0799520:CDS 50.0%
! TCAGCAGTTGCATTGGCCAA+TGG + chr5_3:12757567-12757586 Msa0799520:CDS 50.0%
! CCTTCTTCTCCATGGTGATG+AGG - chr5_3:12757642-12757661 None:intergenic 50.0%
CCTCATCACCATGGAGAAGA+AGG + chr5_3:12757639-12757658 Msa0799520:CDS 50.0%
TTTCCACGACGAAGGAGACG+AGG + chr5_3:12757542-12757561 Msa0799520:CDS 55.0%
ATTCCTCGTCTCCTTCGTCG+TGG - chr5_3:12757548-12757567 None:intergenic 55.0%
TTTCCACGACGAAGGAGACG+AGG + chr5_3:12757542-12757561 Msa0799520:CDS 55.0%
ATTCCTCGTCTCCTTCGTCG+TGG - chr5_3:12757548-12757567 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 12755608 12757902 12755608 ID=Msa0799520;Name=Msa0799520
chr5_3 mRNA 12755608 12757902 12755608 ID=Msa0799520-mRNA-1;Parent=Msa0799520;Name=Msa0799520-mRNA-1;_AED=0.02;_eAED=0.02;_QI=83|1|1|1|1|1|7|210|232
chr5_3 exon 12755608 12755878 12755608 ID=Msa0799520-mRNA-1:exon:5233;Parent=Msa0799520-mRNA-1
chr5_3 exon 12755988 12756057 12755988 ID=Msa0799520-mRNA-1:exon:5234;Parent=Msa0799520-mRNA-1
chr5_3 exon 12756126 12756187 12756126 ID=Msa0799520-mRNA-1:exon:5235;Parent=Msa0799520-mRNA-1
chr5_3 exon 12756267 12756375 12756267 ID=Msa0799520-mRNA-1:exon:5236;Parent=Msa0799520-mRNA-1
chr5_3 exon 12757035 12757076 12757035 ID=Msa0799520-mRNA-1:exon:5237;Parent=Msa0799520-mRNA-1
chr5_3 exon 12757180 12757224 12757180 ID=Msa0799520-mRNA-1:exon:5238;Parent=Msa0799520-mRNA-1
chr5_3 exon 12757510 12757902 12757510 ID=Msa0799520-mRNA-1:exon:5239;Parent=Msa0799520-mRNA-1
chr5_3 five_prime_UTR 12755608 12755690 12755608 ID=Msa0799520-mRNA-1:five_prime_utr;Parent=Msa0799520-mRNA-1
chr5_3 CDS 12755691 12755878 12755691 ID=Msa0799520-mRNA-1:cds;Parent=Msa0799520-mRNA-1
chr5_3 CDS 12755988 12756057 12755988 ID=Msa0799520-mRNA-1:cds;Parent=Msa0799520-mRNA-1
chr5_3 CDS 12756126 12756187 12756126 ID=Msa0799520-mRNA-1:cds;Parent=Msa0799520-mRNA-1
chr5_3 CDS 12756267 12756375 12756267 ID=Msa0799520-mRNA-1:cds;Parent=Msa0799520-mRNA-1
chr5_3 CDS 12757035 12757076 12757035 ID=Msa0799520-mRNA-1:cds;Parent=Msa0799520-mRNA-1
chr5_3 CDS 12757180 12757224 12757180 ID=Msa0799520-mRNA-1:cds;Parent=Msa0799520-mRNA-1
chr5_3 CDS 12757510 12757692 12757510 ID=Msa0799520-mRNA-1:cds;Parent=Msa0799520-mRNA-1
chr5_3 three_prime_UTR 12757693 12757902 12757693 ID=Msa0799520-mRNA-1:three_prime_utr;Parent=Msa0799520-mRNA-1
Gene Sequence

>Msa0799520

ATGGGTCGTGGGAAGATTGAGATAAAGTTGATTGAGAATCCTACTAACAGGCAAGTGACATACTCAAAGAGAAGAAATGGTATATTCAAGAAAGCACATGAACTTAGTGTTCTTTGTGATGCTAAGGTTTCACTCATCATGTTCTCCAAAAATAACAAGATGCATGAGTACATCACCCCTGGACTAACTACAAAGAAGATTATTGATCAATATCAGAAGACTTTGGGGGATATAGATCTGTGGCGTTCTCACTATGAGAAAATGCTTGAAAACTTGAAGAAACTGAAAGATATTAACCATAAGCTTAGAAAACAGATCAGGCATAGAATAGGTGAGGGTGGTATGGAATTGGATGACCTTAGCTTCCAGCAACTGCGTAGTCTTGAAGAGGATATGAATTCTTCCATTGCAAAAATACGTGAAAGGAAGTTTCATGTGATCAAAACTCGGACTGATACCTGTAGGAAAAAGGTTAGAAGCTTGGAGCAGATGAATGGAAATCTCTTGCTTGAACTTAAGGAAAAGTGTGTGATCCATCCACAATTTCTTTTCCACGACGAAGGAGACGAGGAATCAGCAGTTGCATTGGCCAATGGTGCTTCCACTCTGTATGCATTCTGTCAGCACCATTCTCATCTGAATCTTCCTCATCACCATGGAGAAGAAGGTTACAAAAACGACGATTTGCGCCTTGGTTGA
Protein sequence

>Msa0799520

MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYITPGLTTKKIIDQYQKTLGDIDLWRSHYEKMLENLKKLKDINHKLRKQIRHRIGEGGMELDDLSFQQLRSLEEDMNSSIAKIRERKFHVIKTRTDTCRKKVRSLEQMNGNLLLELKEKCVIHPQFLFHDEGDEESAVALANGASTLYAFCQHHSHLNLPHHHGEEGYKNDDLRLG*