Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0799610 | XP_039686389.1 | 88.199 | 161 | 19 | 0 | 88 | 248 | 1 | 161 | 1.07e-93 | 303 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0799610 | A0A396J7J0 | 87.692 | 130 | 16 | 0 | 119 | 248 | 1 | 130 | 2.50e-70 | 238 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0799610 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0799610 | MtrunA17_Chr2g0296781 | 87.692 | 130 | 16 | 0 | 119 | 248 | 1 | 130 | 4.82e-74 | 238 |
| Msa0799610 | MtrunA17_Chr6g0476431 | 88.636 | 88 | 10 | 0 | 119 | 206 | 1 | 88 | 1.69e-52 | 165 |
| Msa0799610 | MtrunA17_Chr1g0196541 | 53.846 | 130 | 60 | 0 | 119 | 248 | 1 | 130 | 1.98e-40 | 147 |
| Msa0799610 | MtrunA17_Chr6g0451441 | 31.447 | 159 | 99 | 5 | 96 | 248 | 65 | 219 | 1.63e-14 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 49 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTCTTGCCTTTGTGAATC+AGG | 0.181362 | 5_3:-12876878 | Msa0799610:CDS |
| TATGCTGAACGGGTGGGTTT+TGG | 0.261215 | 5_3:-12876495 | Msa0799610:CDS |
| TTTCTCGGATTAGGGTTTCT+TGG | 0.279781 | 5_3:-12878300 | Msa0799610:CDS |
| ATTTGAGTCTTGTGATGAAT+TGG | 0.359102 | 5_3:-12876622 | Msa0799610:CDS |
| CGAGGTGAACCTTGGGTAGA+AGG | 0.366254 | 5_3:-12878378 | Msa0799610:CDS |
| TGTCGTGGAAAGAGATCTTT+GGG | 0.378504 | 5_3:-12878261 | Msa0799610:CDS |
| TTGTCGTGGAAAGAGATCTT+TGG | 0.381076 | 5_3:-12878262 | Msa0799610:CDS |
| GTTGGAGGCTGCTGTGGGTC+AGG | 0.381379 | 5_3:-12878238 | Msa0799610:CDS |
| TTTAGATCAAACAAGAATAT+GGG | 0.383170 | 5_3:-12876237 | Msa0799610:CDS |
| TTTGGGGTTGGAGGCTGCTG+TGG | 0.396630 | 5_3:-12878244 | Msa0799610:CDS |
| TTCTCGGATTAGGGTTTCTT+GGG | 0.398631 | 5_3:-12878299 | Msa0799610:CDS |
| TTGGGGTTGGAGGCTGCTGT+GGG | 0.443374 | 5_3:-12878243 | Msa0799610:CDS |
| AAAGAGATCTTTGGGGTTGG+AGG | 0.446045 | 5_3:-12878253 | Msa0799610:CDS |
| TTACAAGAATTATGCTGAAC+GGG | 0.461474 | 5_3:-12876505 | Msa0799610:CDS |
| TGTAACTAAAACGCAGTGTA+AGG | 0.471164 | 5_3:-12876358 | Msa0799610:CDS |
| CGGATTAGGGTTTCTTGGGA+AGG | 0.473988 | 5_3:-12878295 | Msa0799610:CDS |
| TTCCATTCTCATGTTCGATA+CGG | 0.480221 | 5_3:-12878351 | Msa0799610:CDS |
| AATGATTGTTTAGAAGCAAA+TGG | 0.480295 | 5_3:-12876594 | Msa0799610:CDS |
| GATGTCATTCAAATCTGAAA+AGG | 0.489507 | 5_3:-12876541 | Msa0799610:CDS |
| GCATAATGATGATCTAAGTC+CGG | 0.496324 | 5_3:-12876274 | Msa0799610:CDS |
| CATAATGATGATCTAAGTCC+GGG | 0.497070 | 5_3:-12876273 | Msa0799610:CDS |
| AATGCGTGTATTTATTTAGA+CGG | 0.501759 | 5_3:-12876327 | Msa0799610:CDS |
| TTTATTGTATTAGTGCAAGA+AGG | 0.502467 | 5_3:-12876645 | Msa0799610:intron |
| TGATTGTTCGAGGTGAACCT+TGG | 0.508764 | 5_3:-12878386 | Msa0799610:CDS |
| TCTTTCCACGACAAACTCCT+TGG | 0.514173 | 5_3:+12878271 | None:intergenic |
| GTCCGTATCGAACATGAGAA+TGG | 0.515443 | 5_3:+12878349 | None:intergenic |
| GGGTTTCTTGGGAAGGGCCA+AGG | 0.523204 | 5_3:-12878288 | Msa0799610:CDS |
| GATTGTTCGAGGTGAACCTT+GGG | 0.531932 | 5_3:-12878385 | Msa0799610:CDS |
| TGGAAAGAGATCTTTGGGGT+TGG | 0.537521 | 5_3:-12878256 | Msa0799610:CDS |
| GGATTAGGGTTTCTTGGGAA+GGG | 0.538487 | 5_3:-12878294 | Msa0799610:CDS |
| GGAGGCTGCTGTGGGTCAGG+CGG | 0.540202 | 5_3:-12878235 | Msa0799610:intron |
| AAGAATTATGCTGAACGGGT+GGG | 0.547191 | 5_3:-12876501 | Msa0799610:CDS |
| GTTGAAAGACTGATTGTTCG+AGG | 0.549535 | 5_3:-12878396 | Msa0799610:CDS |
| CAAGAATTATGCTGAACGGG+TGG | 0.555569 | 5_3:-12876502 | Msa0799610:CDS |
| TTAGATCAAACAAGAATATG+GGG | 0.564161 | 5_3:-12876236 | Msa0799610:CDS |
| CTAAAATATAGTGTTTCCCC+CGG | 0.578798 | 5_3:+12876255 | None:intergenic |
| GAGTCGCTCAAAGAATCTGT+TGG | 0.598500 | 5_3:-12876391 | Msa0799610:CDS |
| ATTACAAGAATTATGCTGAA+CGG | 0.604383 | 5_3:-12876506 | Msa0799610:CDS |
| ATGAAGAAACACCTTGTGAT+GGG | 0.617823 | 5_3:-12876563 | Msa0799610:CDS |
| GGTGAACCTTGGGTAGAAGG+TGG | 0.638504 | 5_3:-12878375 | Msa0799610:CDS |
| GATGAAGAAACACCTTGTGA+TGG | 0.638705 | 5_3:-12876564 | Msa0799610:CDS |
| AAGGGCCAAGGAGTTTGTCG+TGG | 0.640766 | 5_3:-12878276 | Msa0799610:CDS |
| TGGAAACCACCTTCTACCCA+AGG | 0.651648 | 5_3:+12878369 | None:intergenic |
| TTGAATGACATCCCATCACA+AGG | 0.661065 | 5_3:+12876552 | None:intergenic |
| TAGATCAAACAAGAATATGG+GGG | 0.663543 | 5_3:-12876235 | Msa0799610:CDS |
| ATAATGATGATCTAAGTCCG+GGG | 0.693863 | 5_3:-12876272 | Msa0799610:CDS |
| TAATGATGATCTAAGTCCGG+GGG | 0.702611 | 5_3:-12876271 | Msa0799610:CDS |
| ATATGAGACCTGATTCACAA+AGG | 0.714881 | 5_3:+12876870 | None:intergenic |
| GTCGTGGAAAGAGATCTTTG+GGG | 0.811282 | 5_3:-12878260 | Msa0799610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+TGG | - | chr5_3:12876990-12877009 | Msa0799610:intron | 0.0% |
| !! | ATATATATATATATATATAT+GGG | - | chr5_3:12876991-12877010 | Msa0799610:intron | 0.0% |
| !! | TATATATATATATATATATA+TGG | - | chr5_3:12876990-12877009 | Msa0799610:intron | 0.0% |
| !! | ATATATATATATATATATAT+GGG | - | chr5_3:12876991-12877010 | Msa0799610:intron | 0.0% |
| !!! | ATTGTTTATTTTTTTTTTGA+AGG | + | chr5_3:12876591-12876610 | None:intergenic | 10.0% |
| !!! | TTTAGTTATTTTGTTTATTA+AGG | - | chr5_3:12876674-12876693 | Msa0799610:intron | 10.0% |
| !!! | ATTGTTTATTTTTTTTTTGA+AGG | + | chr5_3:12876591-12876610 | None:intergenic | 10.0% |
| !!! | TTTAGTTATTTTGTTTATTA+AGG | - | chr5_3:12876674-12876693 | Msa0799610:intron | 10.0% |
| !! | TGTTAATTGTTAATTTATAG+AGG | + | chr5_3:12876524-12876543 | None:intergenic | 15.0% |
| !! | ATAAAAATGAGTATATATTC+AGG | + | chr5_3:12877118-12877137 | None:intergenic | 15.0% |
| !!! | TTGTCTTTTTTGTTTTTTTA+AGG | - | chr5_3:12877254-12877273 | Msa0799610:intron | 15.0% |
| !! | TAAATGAAAAATCAATCAAT+CGG | + | chr5_3:12877879-12877898 | None:intergenic | 15.0% |
| !! | AAACAAATAAGTTCAAAAAA+AGG | - | chr5_3:12878113-12878132 | Msa0799610:intron | 15.0% |
| !! | TGTTAATTGTTAATTTATAG+AGG | + | chr5_3:12876524-12876543 | None:intergenic | 15.0% |
| !! | ATAAAAATGAGTATATATTC+AGG | + | chr5_3:12877118-12877137 | None:intergenic | 15.0% |
| !!! | TTGTCTTTTTTGTTTTTTTA+AGG | - | chr5_3:12877254-12877273 | Msa0799610:intron | 15.0% |
| !! | TAAATGAAAAATCAATCAAT+CGG | + | chr5_3:12877879-12877898 | None:intergenic | 15.0% |
| !! | AAACAAATAAGTTCAAAAAA+AGG | - | chr5_3:12878113-12878132 | Msa0799610:intron | 15.0% |
| !! | GAACAATAGATTATTAATCA+TGG | - | chr5_3:12876882-12876901 | Msa0799610:CDS | 20.0% |
| !! | ATGTATGTATGTATGTATAT+GGG | + | chr5_3:12877400-12877419 | None:intergenic | 20.0% |
| !! | TATGTATGTATGTATGTATA+TGG | + | chr5_3:12877401-12877420 | None:intergenic | 20.0% |
| !! | CATAGTTTCATTTCTATTAT+GGG | + | chr5_3:12877532-12877551 | None:intergenic | 20.0% |
| !! | TCATAGTTTCATTTCTATTA+TGG | + | chr5_3:12877533-12877552 | None:intergenic | 20.0% |
| !!! | TTTTAGATCAAACAAGAATA+TGG | - | chr5_3:12878343-12878362 | Msa0799610:CDS | 20.0% |
| !! | TTTAGATCAAACAAGAATAT+GGG | - | chr5_3:12878344-12878363 | Msa0799610:CDS | 20.0% |
| !! | GAACAATAGATTATTAATCA+TGG | - | chr5_3:12876882-12876901 | Msa0799610:CDS | 20.0% |
| !! | ATGTATGTATGTATGTATAT+GGG | + | chr5_3:12877400-12877419 | None:intergenic | 20.0% |
| !! | TATGTATGTATGTATGTATA+TGG | + | chr5_3:12877401-12877420 | None:intergenic | 20.0% |
| !! | CATAGTTTCATTTCTATTAT+GGG | + | chr5_3:12877532-12877551 | None:intergenic | 20.0% |
| !! | TCATAGTTTCATTTCTATTA+TGG | + | chr5_3:12877533-12877552 | None:intergenic | 20.0% |
| !!! | TTTTAGATCAAACAAGAATA+TGG | - | chr5_3:12878343-12878362 | Msa0799610:CDS | 20.0% |
| !! | TTTAGATCAAACAAGAATAT+GGG | - | chr5_3:12878344-12878363 | Msa0799610:CDS | 20.0% |
| !! | GTTTAACTTCAAATATGACA+TGG | + | chr5_3:12876498-12876517 | None:intergenic | 25.0% |
| !!! | ACTTTTAAGTTGTTTGTTAG+CGG | - | chr5_3:12876767-12876786 | Msa0799610:intron | 25.0% |
| ! | TAATCATGGTCTTCTTTAAT+TGG | - | chr5_3:12876896-12876915 | Msa0799610:CDS | 25.0% |
| ! | AAATGAGTATATATTCAGGT+GGG | + | chr5_3:12877114-12877133 | None:intergenic | 25.0% |
| ! | AAAATGAGTATATATTCAGG+TGG | + | chr5_3:12877115-12877134 | None:intergenic | 25.0% |
| ! | AAAAGACAATGACATGTTTA+AGG | + | chr5_3:12877243-12877262 | None:intergenic | 25.0% |
| !!! | TACACCTTAGTATTTTTAAG+TGG | - | chr5_3:12877359-12877378 | Msa0799610:intron | 25.0% |
| !!! | ACACCTTAGTATTTTTAAGT+GGG | - | chr5_3:12877360-12877379 | Msa0799610:intron | 25.0% |
| ! | TGTATGTATGTATGTATATG+GGG | + | chr5_3:12877399-12877418 | None:intergenic | 25.0% |
| ! | CTTACTACAAGAATATTTGA+AGG | + | chr5_3:12877459-12877478 | None:intergenic | 25.0% |
| !!! | TGTTTTTATAGATCATTAGC+AGG | - | chr5_3:12877844-12877863 | Msa0799610:intron | 25.0% |
| ! | TTTATTGTATTAGTGCAAGA+AGG | - | chr5_3:12877936-12877955 | Msa0799610:intron | 25.0% |
| ! | AATGATTGTTTAGAAGCAAA+TGG | - | chr5_3:12877987-12878006 | Msa0799610:intron | 25.0% |
| ! | ATTACAAGAATTATGCTGAA+CGG | - | chr5_3:12878075-12878094 | Msa0799610:intron | 25.0% |
| ! | AATGCGTGTATTTATTTAGA+CGG | - | chr5_3:12878254-12878273 | Msa0799610:CDS | 25.0% |
| ! | TTAGATCAAACAAGAATATG+GGG | - | chr5_3:12878345-12878364 | Msa0799610:CDS | 25.0% |
| !! | GTTTAACTTCAAATATGACA+TGG | + | chr5_3:12876498-12876517 | None:intergenic | 25.0% |
| !!! | ACTTTTAAGTTGTTTGTTAG+CGG | - | chr5_3:12876767-12876786 | Msa0799610:intron | 25.0% |
| ! | TAATCATGGTCTTCTTTAAT+TGG | - | chr5_3:12876896-12876915 | Msa0799610:CDS | 25.0% |
| ! | AAATGAGTATATATTCAGGT+GGG | + | chr5_3:12877114-12877133 | None:intergenic | 25.0% |
| ! | AAAATGAGTATATATTCAGG+TGG | + | chr5_3:12877115-12877134 | None:intergenic | 25.0% |
| ! | AAAAGACAATGACATGTTTA+AGG | + | chr5_3:12877243-12877262 | None:intergenic | 25.0% |
| !!! | TACACCTTAGTATTTTTAAG+TGG | - | chr5_3:12877359-12877378 | Msa0799610:intron | 25.0% |
| !!! | ACACCTTAGTATTTTTAAGT+GGG | - | chr5_3:12877360-12877379 | Msa0799610:intron | 25.0% |
| ! | TGTATGTATGTATGTATATG+GGG | + | chr5_3:12877399-12877418 | None:intergenic | 25.0% |
| ! | CTTACTACAAGAATATTTGA+AGG | + | chr5_3:12877459-12877478 | None:intergenic | 25.0% |
| !!! | TGTTTTTATAGATCATTAGC+AGG | - | chr5_3:12877844-12877863 | Msa0799610:intron | 25.0% |
| ! | TTTATTGTATTAGTGCAAGA+AGG | - | chr5_3:12877936-12877955 | Msa0799610:intron | 25.0% |
| ! | AATGATTGTTTAGAAGCAAA+TGG | - | chr5_3:12877987-12878006 | Msa0799610:intron | 25.0% |
| ! | ATTACAAGAATTATGCTGAA+CGG | - | chr5_3:12878075-12878094 | Msa0799610:intron | 25.0% |
| ! | AATGCGTGTATTTATTTAGA+CGG | - | chr5_3:12878254-12878273 | Msa0799610:CDS | 25.0% |
| ! | TTAGATCAAACAAGAATATG+GGG | - | chr5_3:12878345-12878364 | Msa0799610:CDS | 25.0% |
| ! | CGATTATATCCTCTTTTTCT+CGG | - | chr5_3:12876266-12876285 | Msa0799610:CDS | 30.0% |
| ! | AAGTTTTTCTTTGAGTGCAA+TGG | + | chr5_3:12876428-12876447 | None:intergenic | 30.0% |
| !! | CTCAAAGAAAAACTTGTTGT+CGG | - | chr5_3:12876433-12876452 | Msa0799610:CDS | 30.0% |
| ATTAAGGCATAAATGCAAGT+CGG | - | chr5_3:12876690-12876709 | Msa0799610:intron | 30.0% | |
| ! | ACTTACACCTTAGTGTTTTT+AGG | + | chr5_3:12877079-12877098 | None:intergenic | 30.0% |
| AAAGTGAGTGTAAATTAGTG+AGG | + | chr5_3:12877167-12877186 | None:intergenic | 30.0% | |
| !! | GCAGTTTTGTAACTATCTTA+AGG | + | chr5_3:12877285-12877304 | None:intergenic | 30.0% |
| ACACCCACTTAAAAATACTA+AGG | + | chr5_3:12877366-12877385 | None:intergenic | 30.0% | |
| !!! | TCTGTTTTTGTTTTGGTGAA+CGG | + | chr5_3:12877562-12877581 | None:intergenic | 30.0% |
| ACCAAAACAAAAACAGAGAA+AGG | - | chr5_3:12877565-12877584 | Msa0799610:intron | 30.0% | |
| !!! | TCCTTTCTCTGTTTTTGTTT+TGG | + | chr5_3:12877569-12877588 | None:intergenic | 30.0% |
| AATCAGATTCTATGATTAGC+GGG | + | chr5_3:12877631-12877650 | None:intergenic | 30.0% | |
| CAATCAGATTCTATGATTAG+CGG | + | chr5_3:12877632-12877651 | None:intergenic | 30.0% | |
| GCTTTAATGCTATGAATCAA+TGG | + | chr5_3:12877778-12877797 | None:intergenic | 30.0% | |
| ! | ATTTGAGTCTTGTGATGAAT+TGG | - | chr5_3:12877959-12877978 | Msa0799610:intron | 30.0% |
| GATGTCATTCAAATCTGAAA+AGG | - | chr5_3:12878040-12878059 | Msa0799610:intron | 30.0% | |
| TTACAAGAATTATGCTGAAC+GGG | - | chr5_3:12878076-12878095 | Msa0799610:intron | 30.0% | |
| AAGTTCAAAAAAAGGAGATG+AGG | - | chr5_3:12878121-12878140 | Msa0799610:intron | 30.0% | |
| AGTTCAAAAAAAGGAGATGA+GGG | - | chr5_3:12878122-12878141 | Msa0799610:intron | 30.0% | |
| TAGATCAAACAAGAATATGG+GGG | - | chr5_3:12878346-12878365 | Msa0799610:CDS | 30.0% | |
| ! | CGATTATATCCTCTTTTTCT+CGG | - | chr5_3:12876266-12876285 | Msa0799610:CDS | 30.0% |
| ! | AAGTTTTTCTTTGAGTGCAA+TGG | + | chr5_3:12876428-12876447 | None:intergenic | 30.0% |
| !! | CTCAAAGAAAAACTTGTTGT+CGG | - | chr5_3:12876433-12876452 | Msa0799610:CDS | 30.0% |
| ATTAAGGCATAAATGCAAGT+CGG | - | chr5_3:12876690-12876709 | Msa0799610:intron | 30.0% | |
| ! | ACTTACACCTTAGTGTTTTT+AGG | + | chr5_3:12877079-12877098 | None:intergenic | 30.0% |
| AAAGTGAGTGTAAATTAGTG+AGG | + | chr5_3:12877167-12877186 | None:intergenic | 30.0% | |
| !! | GCAGTTTTGTAACTATCTTA+AGG | + | chr5_3:12877285-12877304 | None:intergenic | 30.0% |
| ACACCCACTTAAAAATACTA+AGG | + | chr5_3:12877366-12877385 | None:intergenic | 30.0% | |
| !!! | TCTGTTTTTGTTTTGGTGAA+CGG | + | chr5_3:12877562-12877581 | None:intergenic | 30.0% |
| ACCAAAACAAAAACAGAGAA+AGG | - | chr5_3:12877565-12877584 | Msa0799610:intron | 30.0% | |
| !!! | TCCTTTCTCTGTTTTTGTTT+TGG | + | chr5_3:12877569-12877588 | None:intergenic | 30.0% |
| AATCAGATTCTATGATTAGC+GGG | + | chr5_3:12877631-12877650 | None:intergenic | 30.0% | |
| CAATCAGATTCTATGATTAG+CGG | + | chr5_3:12877632-12877651 | None:intergenic | 30.0% | |
| GCTTTAATGCTATGAATCAA+TGG | + | chr5_3:12877778-12877797 | None:intergenic | 30.0% | |
| ! | ATTTGAGTCTTGTGATGAAT+TGG | - | chr5_3:12877959-12877978 | Msa0799610:intron | 30.0% |
| GATGTCATTCAAATCTGAAA+AGG | - | chr5_3:12878040-12878059 | Msa0799610:intron | 30.0% | |
| TTACAAGAATTATGCTGAAC+GGG | - | chr5_3:12878076-12878095 | Msa0799610:intron | 30.0% | |
| AAGTTCAAAAAAAGGAGATG+AGG | - | chr5_3:12878121-12878140 | Msa0799610:intron | 30.0% | |
| AGTTCAAAAAAAGGAGATGA+GGG | - | chr5_3:12878122-12878141 | Msa0799610:intron | 30.0% | |
| TAGATCAAACAAGAATATGG+GGG | - | chr5_3:12878346-12878365 | Msa0799610:CDS | 30.0% | |
| TTCCATTCTCATGTTCGATA+CGG | - | chr5_3:12876230-12876249 | Msa0799610:CDS | 35.0% | |
| ! | TATCCTCTTTTTCTCGGATT+AGG | - | chr5_3:12876272-12876291 | Msa0799610:CDS | 35.0% |
| ! | ATCCTCTTTTTCTCGGATTA+GGG | - | chr5_3:12876273-12876292 | Msa0799610:CDS | 35.0% |
| ! | AAAATTTGCTCCCGAGAAAA+TGG | - | chr5_3:12876631-12876650 | Msa0799610:CDS | 35.0% |
| !!! | CGTGCTTTGTTTTTACAACA+TGG | - | chr5_3:12876740-12876759 | Msa0799610:intron | 35.0% |
| !!! | ACACCTTAGTGTTTTTAGGT+GGG | + | chr5_3:12877075-12877094 | None:intergenic | 35.0% |
| !!! | TACACCTTAGTGTTTTTAGG+TGG | + | chr5_3:12877076-12877095 | None:intergenic | 35.0% |
| ! | GTAGCAGAGACAAACTTTTA+AGG | + | chr5_3:12877210-12877229 | None:intergenic | 35.0% |
| !!! | TTTTTGTTTTGGTGAACGGT+GGG | + | chr5_3:12877558-12877577 | None:intergenic | 35.0% |
| AAAGATGAGATAATTGCGGT+GGG | + | chr5_3:12877608-12877627 | None:intergenic | 35.0% | |
| ATATGAGACCTGATTCACAA+AGG | + | chr5_3:12877714-12877733 | None:intergenic | 35.0% | |
| TGAATCAATGGAAGCTATGA+TGG | + | chr5_3:12877766-12877785 | None:intergenic | 35.0% | |
| ATGAAGAAACACCTTGTGAT+GGG | - | chr5_3:12878018-12878037 | Msa0799610:intron | 35.0% | |
| GTTCAAAAAAAGGAGATGAG+GGG | - | chr5_3:12878123-12878142 | Msa0799610:intron | 35.0% | |
| !!! | TGCGTTTTAGTTACAGGATT+TGG | + | chr5_3:12878218-12878237 | None:intergenic | 35.0% |
| !!! | TTACACTGCGTTTTAGTTAC+AGG | + | chr5_3:12878224-12878243 | None:intergenic | 35.0% |
| TGTAACTAAAACGCAGTGTA+AGG | - | chr5_3:12878223-12878242 | Msa0799610:intron | 35.0% | |
| GCATAATGATGATCTAAGTC+CGG | - | chr5_3:12878307-12878326 | Msa0799610:CDS | 35.0% | |
| CATAATGATGATCTAAGTCC+GGG | - | chr5_3:12878308-12878327 | Msa0799610:CDS | 35.0% | |
| ATAATGATGATCTAAGTCCG+GGG | - | chr5_3:12878309-12878328 | Msa0799610:CDS | 35.0% | |
| CTAAAATATAGTGTTTCCCC+CGG | + | chr5_3:12878329-12878348 | None:intergenic | 35.0% | |
| TTCCATTCTCATGTTCGATA+CGG | - | chr5_3:12876230-12876249 | Msa0799610:CDS | 35.0% | |
| ! | TATCCTCTTTTTCTCGGATT+AGG | - | chr5_3:12876272-12876291 | Msa0799610:CDS | 35.0% |
| ! | ATCCTCTTTTTCTCGGATTA+GGG | - | chr5_3:12876273-12876292 | Msa0799610:CDS | 35.0% |
| ! | AAAATTTGCTCCCGAGAAAA+TGG | - | chr5_3:12876631-12876650 | Msa0799610:CDS | 35.0% |
| !!! | CGTGCTTTGTTTTTACAACA+TGG | - | chr5_3:12876740-12876759 | Msa0799610:intron | 35.0% |
| !!! | ACACCTTAGTGTTTTTAGGT+GGG | + | chr5_3:12877075-12877094 | None:intergenic | 35.0% |
| !!! | TACACCTTAGTGTTTTTAGG+TGG | + | chr5_3:12877076-12877095 | None:intergenic | 35.0% |
| ! | GTAGCAGAGACAAACTTTTA+AGG | + | chr5_3:12877210-12877229 | None:intergenic | 35.0% |
| !!! | TTTTTGTTTTGGTGAACGGT+GGG | + | chr5_3:12877558-12877577 | None:intergenic | 35.0% |
| AAAGATGAGATAATTGCGGT+GGG | + | chr5_3:12877608-12877627 | None:intergenic | 35.0% | |
| ATATGAGACCTGATTCACAA+AGG | + | chr5_3:12877714-12877733 | None:intergenic | 35.0% | |
| TGAATCAATGGAAGCTATGA+TGG | + | chr5_3:12877766-12877785 | None:intergenic | 35.0% | |
| ATGAAGAAACACCTTGTGAT+GGG | - | chr5_3:12878018-12878037 | Msa0799610:intron | 35.0% | |
| GTTCAAAAAAAGGAGATGAG+GGG | - | chr5_3:12878123-12878142 | Msa0799610:intron | 35.0% | |
| !!! | TGCGTTTTAGTTACAGGATT+TGG | + | chr5_3:12878218-12878237 | None:intergenic | 35.0% |
| !!! | TTACACTGCGTTTTAGTTAC+AGG | + | chr5_3:12878224-12878243 | None:intergenic | 35.0% |
| TGTAACTAAAACGCAGTGTA+AGG | - | chr5_3:12878223-12878242 | Msa0799610:intron | 35.0% | |
| GCATAATGATGATCTAAGTC+CGG | - | chr5_3:12878307-12878326 | Msa0799610:CDS | 35.0% | |
| CATAATGATGATCTAAGTCC+GGG | - | chr5_3:12878308-12878327 | Msa0799610:CDS | 35.0% | |
| ATAATGATGATCTAAGTCCG+GGG | - | chr5_3:12878309-12878328 | Msa0799610:CDS | 35.0% | |
| CTAAAATATAGTGTTTCCCC+CGG | + | chr5_3:12878329-12878348 | None:intergenic | 35.0% | |
| GTTGAAAGACTGATTGTTCG+AGG | - | chr5_3:12876185-12876204 | Msa0799610:CDS | 40.0% | |
| AACCCTAATCCGAGAAAAAG+AGG | + | chr5_3:12876278-12876297 | None:intergenic | 40.0% | |
| ! | TTTCTCGGATTAGGGTTTCT+TGG | - | chr5_3:12876281-12876300 | Msa0799610:CDS | 40.0% |
| ! | TTCTCGGATTAGGGTTTCTT+GGG | - | chr5_3:12876282-12876301 | Msa0799610:CDS | 40.0% |
| TTGTCGTGGAAAGAGATCTT+TGG | - | chr5_3:12876319-12876338 | Msa0799610:CDS | 40.0% | |
| TGTCGTGGAAAGAGATCTTT+GGG | - | chr5_3:12876320-12876339 | Msa0799610:CDS | 40.0% | |
| !!! | GTTTTTTGGTGGTGACTTGA+AGG | - | chr5_3:12876368-12876387 | Msa0799610:CDS | 40.0% |
| ! | TTGTTTGTTAGCGGCAATCA+TGG | - | chr5_3:12876776-12876795 | Msa0799610:intron | 40.0% |
| GATAGCGAAACGTTTAGCAT+TGG | + | chr5_3:12876821-12876840 | None:intergenic | 40.0% | |
| ACACCCACCTAAAAACACTA+AGG | - | chr5_3:12877069-12877088 | Msa0799610:intron | 40.0% | |
| GTATATATTCAGGTGGGTGT+AGG | + | chr5_3:12877108-12877127 | None:intergenic | 40.0% | |
| !!! | GTTTTTGTTTTGGTGAACGG+TGG | + | chr5_3:12877559-12877578 | None:intergenic | 40.0% |
| GAAAGATGAGATAATTGCGG+TGG | + | chr5_3:12877609-12877628 | None:intergenic | 40.0% | |
| CGGGAAAGATGAGATAATTG+CGG | + | chr5_3:12877612-12877631 | None:intergenic | 40.0% | |
| GATGAAGAAACACCTTGTGA+TGG | - | chr5_3:12878017-12878036 | Msa0799610:intron | 40.0% | |
| TTGAATGACATCCCATCACA+AGG | + | chr5_3:12878032-12878051 | None:intergenic | 40.0% | |
| AAGAATTATGCTGAACGGGT+GGG | - | chr5_3:12878080-12878099 | Msa0799610:intron | 40.0% | |
| TAATGATGATCTAAGTCCGG+GGG | - | chr5_3:12878310-12878329 | Msa0799610:CDS | 40.0% | |
| GTTGAAAGACTGATTGTTCG+AGG | - | chr5_3:12876185-12876204 | Msa0799610:CDS | 40.0% | |
| AACCCTAATCCGAGAAAAAG+AGG | + | chr5_3:12876278-12876297 | None:intergenic | 40.0% | |
| ! | TTTCTCGGATTAGGGTTTCT+TGG | - | chr5_3:12876281-12876300 | Msa0799610:CDS | 40.0% |
| ! | TTCTCGGATTAGGGTTTCTT+GGG | - | chr5_3:12876282-12876301 | Msa0799610:CDS | 40.0% |
| TTGTCGTGGAAAGAGATCTT+TGG | - | chr5_3:12876319-12876338 | Msa0799610:CDS | 40.0% | |
| TGTCGTGGAAAGAGATCTTT+GGG | - | chr5_3:12876320-12876339 | Msa0799610:CDS | 40.0% | |
| !!! | GTTTTTTGGTGGTGACTTGA+AGG | - | chr5_3:12876368-12876387 | Msa0799610:CDS | 40.0% |
| ! | TTGTTTGTTAGCGGCAATCA+TGG | - | chr5_3:12876776-12876795 | Msa0799610:intron | 40.0% |
| GATAGCGAAACGTTTAGCAT+TGG | + | chr5_3:12876821-12876840 | None:intergenic | 40.0% | |
| ACACCCACCTAAAAACACTA+AGG | - | chr5_3:12877069-12877088 | Msa0799610:intron | 40.0% | |
| GTATATATTCAGGTGGGTGT+AGG | + | chr5_3:12877108-12877127 | None:intergenic | 40.0% | |
| !!! | GTTTTTGTTTTGGTGAACGG+TGG | + | chr5_3:12877559-12877578 | None:intergenic | 40.0% |
| GAAAGATGAGATAATTGCGG+TGG | + | chr5_3:12877609-12877628 | None:intergenic | 40.0% | |
| CGGGAAAGATGAGATAATTG+CGG | + | chr5_3:12877612-12877631 | None:intergenic | 40.0% | |
| GATGAAGAAACACCTTGTGA+TGG | - | chr5_3:12878017-12878036 | Msa0799610:intron | 40.0% | |
| TTGAATGACATCCCATCACA+AGG | + | chr5_3:12878032-12878051 | None:intergenic | 40.0% | |
| AAGAATTATGCTGAACGGGT+GGG | - | chr5_3:12878080-12878099 | Msa0799610:intron | 40.0% | |
| TAATGATGATCTAAGTCCGG+GGG | - | chr5_3:12878310-12878329 | Msa0799610:CDS | 40.0% | |
| TGATTGTTCGAGGTGAACCT+TGG | - | chr5_3:12876195-12876214 | Msa0799610:CDS | 45.0% | |
| GATTGTTCGAGGTGAACCTT+GGG | - | chr5_3:12876196-12876215 | Msa0799610:CDS | 45.0% | |
| GTCCGTATCGAACATGAGAA+TGG | + | chr5_3:12876235-12876254 | None:intergenic | 45.0% | |
| GGATTAGGGTTTCTTGGGAA+GGG | - | chr5_3:12876287-12876306 | Msa0799610:CDS | 45.0% | |
| TCTTTCCACGACAAACTCCT+TGG | + | chr5_3:12876313-12876332 | None:intergenic | 45.0% | |
| GTCGTGGAAAGAGATCTTTG+GGG | - | chr5_3:12876321-12876340 | Msa0799610:CDS | 45.0% | |
| !! | TGGAAAGAGATCTTTGGGGT+TGG | - | chr5_3:12876325-12876344 | Msa0799610:CDS | 45.0% |
| !! | AAAGAGATCTTTGGGGTTGG+AGG | - | chr5_3:12876328-12876347 | Msa0799610:CDS | 45.0% |
| !! | TCACGCTTTCGCCATTTTCT+CGG | + | chr5_3:12876645-12876664 | None:intergenic | 45.0% |
| ! | AATGGCGAAAGCGTGAATGT+TGG | - | chr5_3:12876649-12876668 | Msa0799610:intron | 45.0% |
| TTTGTTAGCGGCAATCATGG+AGG | - | chr5_3:12876779-12876798 | Msa0799610:intron | 45.0% | |
| TTGTTAGCGGCAATCATGGA+GGG | - | chr5_3:12876780-12876799 | Msa0799610:intron | 45.0% | |
| CACTCTTGCCTTTGTGAATC+AGG | - | chr5_3:12877703-12877722 | Msa0799610:intron | 45.0% | |
| CAAGAATTATGCTGAACGGG+TGG | - | chr5_3:12878079-12878098 | Msa0799610:intron | 45.0% | |
| GAGTCGCTCAAAGAATCTGT+TGG | - | chr5_3:12878190-12878209 | Msa0799610:intron | 45.0% | |
| ATATGGGGGCTCAAATGAAG+AGG | - | chr5_3:12878360-12878379 | Msa0799610:CDS | 45.0% | |
| TGATTGTTCGAGGTGAACCT+TGG | - | chr5_3:12876195-12876214 | Msa0799610:CDS | 45.0% | |
| GATTGTTCGAGGTGAACCTT+GGG | - | chr5_3:12876196-12876215 | Msa0799610:CDS | 45.0% | |
| GTCCGTATCGAACATGAGAA+TGG | + | chr5_3:12876235-12876254 | None:intergenic | 45.0% | |
| GGATTAGGGTTTCTTGGGAA+GGG | - | chr5_3:12876287-12876306 | Msa0799610:CDS | 45.0% | |
| TCTTTCCACGACAAACTCCT+TGG | + | chr5_3:12876313-12876332 | None:intergenic | 45.0% | |
| GTCGTGGAAAGAGATCTTTG+GGG | - | chr5_3:12876321-12876340 | Msa0799610:CDS | 45.0% | |
| !! | TGGAAAGAGATCTTTGGGGT+TGG | - | chr5_3:12876325-12876344 | Msa0799610:CDS | 45.0% |
| !! | AAAGAGATCTTTGGGGTTGG+AGG | - | chr5_3:12876328-12876347 | Msa0799610:CDS | 45.0% |
| !! | TCACGCTTTCGCCATTTTCT+CGG | + | chr5_3:12876645-12876664 | None:intergenic | 45.0% |
| ! | AATGGCGAAAGCGTGAATGT+TGG | - | chr5_3:12876649-12876668 | Msa0799610:intron | 45.0% |
| TTTGTTAGCGGCAATCATGG+AGG | - | chr5_3:12876779-12876798 | Msa0799610:intron | 45.0% | |
| TTGTTAGCGGCAATCATGGA+GGG | - | chr5_3:12876780-12876799 | Msa0799610:intron | 45.0% | |
| CACTCTTGCCTTTGTGAATC+AGG | - | chr5_3:12877703-12877722 | Msa0799610:intron | 45.0% | |
| CAAGAATTATGCTGAACGGG+TGG | - | chr5_3:12878079-12878098 | Msa0799610:intron | 45.0% | |
| GAGTCGCTCAAAGAATCTGT+TGG | - | chr5_3:12878190-12878209 | Msa0799610:intron | 45.0% | |
| ATATGGGGGCTCAAATGAAG+AGG | - | chr5_3:12878360-12878379 | Msa0799610:CDS | 45.0% | |
| !! | TTAATTAAATTTAAATAGAA+GGG | + | chr5_3:12877307-12877326 | None:intergenic | 5.0% |
| !! | TTTAATTAAATTTAAATAGA+AGG | + | chr5_3:12877308-12877327 | None:intergenic | 5.0% |
| !! | TAATTAAAATAGAAATAAAA+TGG | - | chr5_3:12877320-12877339 | Msa0799610:intron | 5.0% |
| !! | AATTAAAATAGAAATAAAAT+GGG | - | chr5_3:12877321-12877340 | Msa0799610:intron | 5.0% |
| !! | TTAATTAAATTTAAATAGAA+GGG | + | chr5_3:12877307-12877326 | None:intergenic | 5.0% |
| !! | TTTAATTAAATTTAAATAGA+AGG | + | chr5_3:12877308-12877327 | None:intergenic | 5.0% |
| !! | TAATTAAAATAGAAATAAAA+TGG | - | chr5_3:12877320-12877339 | Msa0799610:intron | 5.0% |
| !! | AATTAAAATAGAAATAAAAT+GGG | - | chr5_3:12877321-12877340 | Msa0799610:intron | 5.0% |
| TGGAAACCACCTTCTACCCA+AGG | + | chr5_3:12876215-12876234 | None:intergenic | 50.0% | |
| ! | CGGATTAGGGTTTCTTGGGA+AGG | - | chr5_3:12876286-12876305 | Msa0799610:CDS | 50.0% |
| !! | CACGCTTTCGCCATTTTCTC+GGG | + | chr5_3:12876644-12876663 | None:intergenic | 50.0% |
| TGTTAGCGGCAATCATGGAG+GGG | - | chr5_3:12876781-12876800 | Msa0799610:intron | 50.0% | |
| TGAGATAATTGCGGTGGGAG+CGG | + | chr5_3:12877603-12877622 | None:intergenic | 50.0% | |
| !! | TATGCTGAACGGGTGGGTTT+TGG | - | chr5_3:12878086-12878105 | Msa0799610:intron | 50.0% |
| TGGAAACCACCTTCTACCCA+AGG | + | chr5_3:12876215-12876234 | None:intergenic | 50.0% | |
| ! | CGGATTAGGGTTTCTTGGGA+AGG | - | chr5_3:12876286-12876305 | Msa0799610:CDS | 50.0% |
| !! | CACGCTTTCGCCATTTTCTC+GGG | + | chr5_3:12876644-12876663 | None:intergenic | 50.0% |
| TGTTAGCGGCAATCATGGAG+GGG | - | chr5_3:12876781-12876800 | Msa0799610:intron | 50.0% | |
| TGAGATAATTGCGGTGGGAG+CGG | + | chr5_3:12877603-12877622 | None:intergenic | 50.0% | |
| !! | TATGCTGAACGGGTGGGTTT+TGG | - | chr5_3:12878086-12878105 | Msa0799610:intron | 50.0% |
| CGAGGTGAACCTTGGGTAGA+AGG | - | chr5_3:12876203-12876222 | Msa0799610:CDS | 55.0% | |
| GGTGAACCTTGGGTAGAAGG+TGG | - | chr5_3:12876206-12876225 | Msa0799610:CDS | 55.0% | |
| AAGGGCCAAGGAGTTTGTCG+TGG | - | chr5_3:12876305-12876324 | Msa0799610:CDS | 55.0% | |
| !!! | CTGTGGGTCAGGCGGTTTTT+TGG | - | chr5_3:12876354-12876373 | Msa0799610:CDS | 55.0% |
| !!! | TGGGTCAGGCGGTTTTTTGG+TGG | - | chr5_3:12876357-12876376 | Msa0799610:CDS | 55.0% |
| ! | TCATGGAGGGGTGGTGTCAA+AGG | - | chr5_3:12876793-12876812 | Msa0799610:intron | 55.0% |
| TGGGGGCTCAAATGAAGAGG+AGG | - | chr5_3:12878363-12878382 | Msa0799610:CDS | 55.0% | |
| CGAGGTGAACCTTGGGTAGA+AGG | - | chr5_3:12876203-12876222 | Msa0799610:CDS | 55.0% | |
| GGTGAACCTTGGGTAGAAGG+TGG | - | chr5_3:12876206-12876225 | Msa0799610:CDS | 55.0% | |
| AAGGGCCAAGGAGTTTGTCG+TGG | - | chr5_3:12876305-12876324 | Msa0799610:CDS | 55.0% | |
| !!! | CTGTGGGTCAGGCGGTTTTT+TGG | - | chr5_3:12876354-12876373 | Msa0799610:CDS | 55.0% |
| !!! | TGGGTCAGGCGGTTTTTTGG+TGG | - | chr5_3:12876357-12876376 | Msa0799610:CDS | 55.0% |
| ! | TCATGGAGGGGTGGTGTCAA+AGG | - | chr5_3:12876793-12876812 | Msa0799610:intron | 55.0% |
| TGGGGGCTCAAATGAAGAGG+AGG | - | chr5_3:12878363-12878382 | Msa0799610:CDS | 55.0% | |
| GGGTTTCTTGGGAAGGGCCA+AGG | - | chr5_3:12876293-12876312 | Msa0799610:CDS | 60.0% | |
| ! | TTTGGGGTTGGAGGCTGCTG+TGG | - | chr5_3:12876337-12876356 | Msa0799610:CDS | 60.0% |
| TTGGGGTTGGAGGCTGCTGT+GGG | - | chr5_3:12876338-12876357 | Msa0799610:CDS | 60.0% | |
| TAGCGGCAATCATGGAGGGG+TGG | - | chr5_3:12876784-12876803 | Msa0799610:intron | 60.0% | |
| GGGTTTCTTGGGAAGGGCCA+AGG | - | chr5_3:12876293-12876312 | Msa0799610:CDS | 60.0% | |
| ! | TTTGGGGTTGGAGGCTGCTG+TGG | - | chr5_3:12876337-12876356 | Msa0799610:CDS | 60.0% |
| TTGGGGTTGGAGGCTGCTGT+GGG | - | chr5_3:12876338-12876357 | Msa0799610:CDS | 60.0% | |
| TAGCGGCAATCATGGAGGGG+TGG | - | chr5_3:12876784-12876803 | Msa0799610:intron | 60.0% | |
| GTTGGAGGCTGCTGTGGGTC+AGG | - | chr5_3:12876343-12876362 | Msa0799610:CDS | 65.0% | |
| GTTGGAGGCTGCTGTGGGTC+AGG | - | chr5_3:12876343-12876362 | Msa0799610:CDS | 65.0% | |
| GGAGGCTGCTGTGGGTCAGG+CGG | - | chr5_3:12876346-12876365 | Msa0799610:CDS | 70.0% | |
| GCGGTGGGAGCGGTGTACGT+GGG | + | chr5_3:12877593-12877612 | None:intergenic | 70.0% | |
| TGCGGTGGGAGCGGTGTACG+TGG | + | chr5_3:12877594-12877613 | None:intergenic | 70.0% | |
| GGAGGCTGCTGTGGGTCAGG+CGG | - | chr5_3:12876346-12876365 | Msa0799610:CDS | 70.0% | |
| GCGGTGGGAGCGGTGTACGT+GGG | + | chr5_3:12877593-12877612 | None:intergenic | 70.0% | |
| TGCGGTGGGAGCGGTGTACG+TGG | + | chr5_3:12877594-12877613 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 12876170 | 12878433 | 12876170 | ID=Msa0799610;Name=Msa0799610 |
| chr5_3 | mRNA | 12876170 | 12878433 | 12876170 | ID=Msa0799610-mRNA-1;Parent=Msa0799610;Name=Msa0799610-mRNA-1;_AED=0.49;_eAED=0.49;_QI=0|0|0|0.33|1|1|3|0|248 |
| chr5_3 | exon | 12878236 | 12878433 | 12878236 | ID=Msa0799610-mRNA-1:exon:5318;Parent=Msa0799610-mRNA-1 |
| chr5_3 | exon | 12876860 | 12876923 | 12876860 | ID=Msa0799610-mRNA-1:exon:5317;Parent=Msa0799610-mRNA-1 |
| chr5_3 | exon | 12876170 | 12876654 | 12876170 | ID=Msa0799610-mRNA-1:exon:5316;Parent=Msa0799610-mRNA-1 |
| chr5_3 | CDS | 12878236 | 12878433 | 12878236 | ID=Msa0799610-mRNA-1:cds;Parent=Msa0799610-mRNA-1 |
| chr5_3 | CDS | 12876860 | 12876923 | 12876860 | ID=Msa0799610-mRNA-1:cds;Parent=Msa0799610-mRNA-1 |
| chr5_3 | CDS | 12876170 | 12876654 | 12876170 | ID=Msa0799610-mRNA-1:cds;Parent=Msa0799610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
